<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:37:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307621" ref_strand="+" ref_description="SGN-E307621 [cLEY-16-B5]">
      <seq>taaattagaaattgcaaaggaaatcgctgtagtagcacagagtgaatccaaatggaagcagttgggtgaactggcaatgtctgctggaatgctggagatggcagaggattgtttgaaatacgctaatgacttgagtggtttgctgatgctttattcctcgttaggagatgctgaaggaatggctgaattagcatctcttgcaaaagagcatggaagaaacaatgttgcattcctttgcctgttcctcctgggtaaagtggaagattgtgttcagctgttggttgacagcaaccggatacctgaggctgcatttatggcaagatcttaccttccaagtaaggtttctgaaatagttgcaatgtggaggaaggatcttaataaggttaaccagaaagcagcagaagctttggctgatcctgaagaatatcccaacatgtttgagcactggcaaattgcacatgcagttgaagctagagtcgcagaggaaaggggtgtatacccaccagcagcagattatggaaattatgctgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="5021" stop="2366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4721" g_stop="4703" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4702" i_stop="4583" i_length="120">
            <donor d_prob="0.860" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4582" g_stop="4511" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="91" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4510" i_stop="4014" i_length="497">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4013" g_stop="3817" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="288" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3816" i_stop="3724" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3723" g_stop="3630" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="382" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3629" i_stop="3070" i_length="560">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3069" g_stop="2963" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="489" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2962" i_stop="2711" i_length="252">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2710" g_stop="2666" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="534" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E307621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4721" e_stop="4703"/>
          <exon e_start="4582" e_stop="4511"/>
          <exon e_start="4013" e_stop="3817"/>
          <exon e_start="3723" e_stop="3630"/>
          <exon e_start="3069" e_stop="2963"/>
          <exon e_start="2710" e_stop="2666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAGAAATTGCAAAGGTAAGGGCTACTAACTCGTGGAAGTGTGTGGTTTGACTTCAGCCTCTCTTCCTTATACTTGTCTCTGTCAGAAGAACCATATGTCGTTAAGTATGGCCATGTGCCCCTTCTTGTTTGCAGGAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATGGTAATTGATACTTACAGCCGCTTGAGCCCCTTTTTTTTTGAAAACAAATTCTTACAAGGGGGAACATAAACCACTTGAATTTTCGAAAAAAAAAGTAAATTGATGAGTTTTACAAATGGTCAGTGTTTGAGCTCCTTAATTTATATCAGAAATTCCAAGTCAGCTGTCCGAAAGTTTCTTAGCAGAAAACTCCTGACCCATACCATTTTTGCTGCTGGAAAAATTTATGGTTAAGGTTCTGAACGCTGTTGGTTGTCCTTTTGCCTGTGAAAGTTTACCGAATGTTTCTGTTTGTAGTTCAGTGTAAAGGTTGTTTGTAGTTGATTTCTGCAGCCTCCTGGTCATCCTTTTTAGTACTCTTCACTTGGATTATAACAACAAGCCCAGTGTGATCCCACAAATGGGGTCTGGGGATGGTGGGGTGTACACAAACCTTATCCCTACCAACTGTTCTTTACTTGAATTCTCTATCAATATTGCTGTTCTGTATTTTGCAGCTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAGGTACTTTTTCATTTGTGTTCCTCTTCAGTTTGTTGCCACTTGTCAGATTGTTTCAACTCTGGAATGATATTCTCTATTGCAATTACTTTGCAGCAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAGGTTAGTGATATTCATTTTTGTGATTGCTATTAGATTTTCATGGTCCACTATTTAAAGAGCTGTTTCTCTTGGTCAGTTTTTTAAAAAAGTATGCTACTTTCGTTTTAATCTTTTTTAAAATAAATAAAGAAATAAAGTACAATGCTTCAGCCTCATGCTGTGGGGATCATGCTTTTTGACCTTTAAGTTAACAGTGCAAAGGACTTAGAGCTCTTTGATGGTACTGTTATGCCTGTGATAAGACATAAAAATTTGCTGTTGTTGACGTGTGTGTTCTCTTTTCTAACTTTTGCTTGCATTTGCATGTGCCTGAAAATAGCCTTGAAATATTTCTGTCGATTTCTCTCAGCGGCCAATGTGGCCCGAGAACACTCTATATGCGATAGACATCCATTTAACTTCACGATTAGAATTTGAGTGTCTTTGTAAAAGAATGATTTGAACTTGAGCGCAAGTAGTAAGAGAACTGCAGAAAAGGTTGTCTTTTATGGGTAAGAAACAGTCTGCAGAATTATCTGTCAGATTTTGAACCTAGTTTTCTGCATGATTTCTGCCTGTAGGTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAGGTGTATATAGACCACTATTCCCCTTTCTGTGCATCTTTTGTAGCTTGTACACTGGTGGCTCTTTGAAAAAAATTTACATCTCTTTTTCTATTTGTACTCCTTTCCTCTTATTGCTGGAGTATGAGTTCAACAGGGTTTAATGGATGGGCATATTTAACACCATTGTGGACTGGTAGCCAGTTATGAGACCAAGTGTTGCACAATTTCATTGTGAAAATTTTTCATCAAGGTTATTTTCTAATTTTTATGTAGGGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</genome_strand>
        <mrna_strand>TAAATTAGAAATTGCAAAG........................................................................................................................GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAG.............................................................................................CAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAG............................................................................................................................................................................................................................................................GGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701703" ref_strand="+" ref_description="SGN-E701703 [FA16CH02]">
      <seq>gcctcgttcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaacaattcttcttcgagactgaattactgtgtaggcggcgaggtgaccacaatgtttcacttagaccgacccatgtacctgctgggatatctcgctaatcaaagtagagttttcctgattgacaaagagttcaatgtcgtgggatatactcttctgctcagcttgatagagtacaagacacttgtgatgcgtggtgactgggacagagctaatgcagtcttaccatcaattcctaaggatcaccataacagtgttgctcgtttcttggaatcacggggtatgattgaggaagcattggaagttgcaacagacgctgactacagatttgaacttgccatacagttgggtaaattagaaattgcaaaggaaatcgctgtagtagcacagagtgaatccaaatggaagcagttgggtgaactggcaatgtctgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="7095" stop="4214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6798" g_stop="6723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6722" i_stop="6383" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6382" g_stop="6242" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6241" i_stop="6145" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6070" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="292" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6069" i_stop="5980" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5979" g_stop="5803" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="469" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5802" i_stop="5710" i_length="93">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5709" g_stop="5618" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5617" i_stop="5525" i_length="93">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5524" g_stop="5408" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="678" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5407" i_stop="4818" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4817" g_stop="4703" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="793" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4702" i_stop="4583" i_length="120">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4582" g_stop="4514" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="862" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E701703" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6798" e_stop="6723"/>
          <exon e_start="6382" e_stop="6242"/>
          <exon e_start="6144" e_stop="6070"/>
          <exon e_start="5979" e_stop="5803"/>
          <exon e_start="5709" e_stop="5618"/>
          <exon e_start="5524" e_stop="5408"/>
          <exon e_start="4817" e_stop="4703"/>
          <exon e_start="4582" e_stop="4514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAGGTATGAAAAGTCATTCATACAGTTTTATGGACCTCTTTGTTTTCAGAATTTCTCATCTCATAGGTGATTAACAGTGTTTCTTATGATCTTTAGGTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAAGTAAGTAGGCTCATGACAGCTTCTCACACAGGAACTAGAAAAATTGTTTCAAGTATGACTCTTCTACGATGACCCATATTCTTTTCATTACAGTGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAGGTACATCTCTATTCTTCTTGTAATATGTTTTTTTCTGTGAATATGATTAACGAATTGTGCTTGATTGCGATTTTCCTTCATCTTCGAACGCAGTTGCAAAATGTGACAAACTGGCAGTTGAAAAAATGCAAACTATCATTTTATTGTAGTCTATGATGTAGATTGTTTTCTTAAGACACATTATTGAGTATTGGAGTGAAATGTGTCCAAATGGTATGAAATGGATTTTGAGGTTTCATATAGCCCATCCCATCTAGTTTGTGAACACAGTTGTATTGATGTAATATTGTTTATTATCCTGGGTTGTGGCACACACTACTAAAGTTACTCTGATAGCCGTTGTAATTTTAGTGCTAATACGTGCTACAAGCCCTGACTTTCGGAAGGGATGCGTATATTAGATAAGAGGATATTCTTACTGCTATGCTATGTGATTGGATGCAGTCACTCATGTTCTTATTTTTCCTATGATCTATTGGGATCTGCATTAATATATTGTATTTAGTAGTTGAGCCTTGGGGGGGGGGGGTTCTGTCTTATATGATGGGATTATCAAGTTCTCTAAGTTCTGATGAAATGATTCCCTGTAGTGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAGGTAAGGGCTACTAACTCGTGGAAGTGTGTGGTTTGACTTCAGCCTCTCTTCCTTATACTTGTCTCTGTCAGAAGAACCATATGTCGTTAAGTATGGCCATGTGCCCCTTCTTGTTTGCAGGAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGA</genome_strand>
        <mrna_strand>GCCTCGTTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG.............................................................................................GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAA.............................................................................................TGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAG........................................................................................................................GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250426" ref_strand="+" ref_description="SGN-E250426 [cLEG-6-B12]">
      <seq>tttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtgagtttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaacaattcttcttcgagactgaattactgtgtaggcggcgaggtgaccacaatgtttcacttagaccgacccatgtacctgctgggatatctcgctaatcaaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="7174" stop="5345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6874" g_stop="6723" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6722" i_stop="6383" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6382" g_stop="6242" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6241" i_stop="6145" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6070" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6069" i_stop="5980" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5979" g_stop="5803" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="546" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5802" i_stop="5710" i_length="93">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5709" g_stop="5645" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="611" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E250426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6874" e_stop="6723"/>
          <exon e_start="6382" e_stop="6242"/>
          <exon e_start="6144" e_stop="6070"/>
          <exon e_start="5979" e_stop="5803"/>
          <exon e_start="5709" e_stop="5645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCA-TTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAGGTATGAAAAGTCATTCATACAGTTTTATGGACCTCTTTGTTTTCAGAATTTCTCATCTCATAGGTGATTAACAGTGTTTCTTATGATCTTTAGGTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAG</genome_strand>
        <mrna_strand>TTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTGAGTTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG.............................................................................................GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266706" ref_strand="+" ref_description="SGN-E266706 [cLEI-5-H6]">
      <seq>tgatggagaaagattgcctttggcggtcaaggaattgggaacttgtgacctatacccacaaagcttaaagcataaccccaatggaaggtttgttgttgtttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtcatttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="7780" stop="5541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7480" g_stop="7420" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7419" i_stop="6912" i_length="508">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6911" g_stop="6723" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="250" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6722" i_stop="6383" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6382" g_stop="6242" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="391" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6241" i_stop="6145" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6144" g_stop="6070" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="466" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6069" i_stop="5980" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5979" g_stop="5841" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="605" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E266706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7480" e_stop="7420"/>
          <exon e_start="6911" e_stop="6723"/>
          <exon e_start="6382" e_stop="6242"/>
          <exon e_start="6144" e_stop="6070"/>
          <exon e_start="5979" e_stop="5841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAAGTGAGTCAGATTTACAGCTAATACCTGGCATTTTGTATAATCTTTTACAACCTGCTTTGCAACTGTGAATTGGATCTGGTTCCATAGTTCAAATACTTCAATTGTTATTCATGTAAGGTTATCCTGTTTGGTTTGCATAAACTGTATCCTCTTTCTAGTAAAAGACTTGTTATTTTCGTTAAAAAAGCAACGCATAGATTTGAAACCAATCCTCCCTTAATCTGATTTCTGGTTTTCGTTTTGTACAGTTTCTCTCTTCAGACTTCCATTGTGGGAAGCCATTTTGTTGTAGTTATGCTTATCCCAGAAGATATGACTTATGTACCTGTTTCTTTGCTTTCTTTATGTCCTTAAAAATGTGTCGTTTTATTGGTTCTTTAGTCATCTCCTCATGGTTTGAGGTTGTGCTTGCCATTTGGAATATACTAGTTTCCCTCTTAGGGTTAAAGGATGTAATTACTTAGATGTCACTTACTGTTGATCTCATTCTTTTTCTCCTCCTTCACAGAGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACA</genome_strand>
        <mrna_strand>TGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537619" ref_strand="+" ref_description="SGN-E537619 [TUS-56-F1]">
      <seq>ctgatggagaaagattgcctttggcggtcaaggaattgggaacttgtgacctatacccacaaagcttaaagcataaccccaatggaaggtttgttgttgtttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtcatttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="7781" stop="5589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7481" g_stop="7420" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7419" i_stop="6912" i_length="508">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6911" g_stop="6723" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="251" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6722" i_stop="6383" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6382" g_stop="6242" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="392" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6241" i_stop="6145" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6144" g_stop="6070" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="467" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6069" i_stop="5980" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5979" g_stop="5889" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="558" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E537619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7481" e_stop="7420"/>
          <exon e_start="6911" e_stop="6723"/>
          <exon e_start="6382" e_stop="6242"/>
          <exon e_start="6144" e_stop="6070"/>
          <exon e_start="5979" e_stop="5889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAAGTGAGTCAGATTTACAGCTAATACCTGGCATTTTGTATAATCTTTTACAACCTGCTTTGCAACTGTGAATTGGATCTGGTTCCATAGTTCAAATACTTCAATTGTTATTCATGTAAGGTTATCCTGTTTGGTTTGCATAAACTGTATCCTCTTTCTAGTAAAAGACTTGTTATTTTCGTTAAAAAAGCAACGCATAGATTTGAAACCAATCCTCCCTTAATCTGATTTCTGGTTTTCGTTTTGTACAGTTTCTCTCTTCAGACTTCCATTGTGGGAAGCCATTTTGTTGTAGTTATGCTTATCCCAGAAGATATGACTTATGTACCTGTTTCTTTGCTTTCTTTATGTCCTTAAAAATGTGTCGTTTTATTGGTTCTTTAGTCATCTCCTCATGGTTTGAGGTTGTGCTTGCCATTTGGAATATACTAGTTTCCCTCTTAGGGTTAAAGGATGTAATTACTTAGATGTCACTTACTGTTGATCTCATTCTTTTTCTCCTCCTTCACAGAGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATG</genome_strand>
        <mrna_strand>CTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734903" ref_strand="+" ref_description="SGN-E734903 [LB13DF05]">
      <seq>ccaatgtgttacccgagagaacgtcctggacgattcgttcctcctgatgaagggcagagaagggaacaagtggagatacaagttgtaagcagagaagtatcaaatggaaatggatcatcagctgaagctggaacaatgaaacaatgtgtttgttcccctacacatcatccaggctcattcaggtgtaggcatcatcatgctgattacaaatgggctgctcaacagggaactattaagactgctgatcattagttccctacgtgaactcacatgtaaaaattcatgacattcatctgtcctgtatttactttattttctacgcttcttcatctatatgtgtgttttctttaccctggttatattaagacttgtaatatcattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="21465" stop="75705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21765" g_stop="22166" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E734903" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21765" e_stop="22166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAA</genome_strand>
        <mrna_strand>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735140" ref_strand="+" ref_description="SGN-E735140 [LB14CB11]">
      <seq>gttacccgagagaacgtcctggacgattcgttcctcctgatgaagggcagagaagggaacaagtggagatacaagttgtaagcagagaagtatcaaatggaaatggatcatcagctgaagctggaacaatgaaacaatgtgtttgttcccctacacatcatccaggctcattcaggtgtaggcatcatcatgctgattacaaatgggctgctcaacagggaactattaagactgctgatcattagttccctacgtgaactcacatgtaaaaattcatgacattcatctgtcctgtatttactttattttctacgcttcttcatctatatgtgtgttttctttaccctggttatattaagacttgtaatatcattacgaaactgagtcactttcaagaaatagcctataaaatttcaaatagagttgatttctcggatggtcacttgttttagaaagtcactttctttgttgaagaaaatttgaatcagaagaaatgtgattttctaagataataactattagttgagtgaccatctgagaaatcaaccctcacacatgtgtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="21472" stop="22638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21772" g_stop="22346" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E735140" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21772" e_stop="22346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAATTTTCAAT</genome_strand>
        <mrna_strand>GTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250709" ref_strand="+" ref_description="SGN-E250709 [cLEG-7-A14]">
      <seq>ggttctgctttcaacatcctccggggtgtttccgccactgaaggacctctggctctatacagaggcatggctgctcctctcgcttccgtcacatttcagaacgccatggtatttcagatttatgcagtgctatctcgagcattggacaggaatgttccagccagtgatccaccctcctacaaaggagtggccttaggtggatttggaacaggagcattacaaagcctaatgctcactcctgtcgaacttgtgaaaattcgacttcagttgcaacagagaaacatcctggataacaaaaatcaaatgactagttgtaagggtccaactgatgtggcaagaaacatattcagacaagaaggatggaggggaatttatcgcggattaacaattacagtcctcagagatgcaccagctcacggcctatatttctggacatacgagtatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="32545" stop="35710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32845" g_stop="32943" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32944" i_stop="35060" i_length="2117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35061" g_stop="35410" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="449" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E250709" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32845" e_stop="32943"/>
          <exon e_start="35061" e_stop="35410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTGCTTTCAACATCCTCCGCCGTGTTGCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAGGTCATTCCTTGTTTTTATCCAGCAGTAATTACGGTTTTTACTAATTGTATATATATAAAATTGAAGTTGTCAAAATTTTGAATTCGCATCTGAATCACACGCGTAAAATGAATGTTTATTCATGTATATAAATCAGACTTCTCCCCTGAGTTTCTCCTAGCTAAGCTTATTAGAGCAGGTGGATTCCATCAAACTCATTATATTCAAATAAATATGTTTTATGTTTAAAATTCATAAAAATAAAATTTTAATTTCACTGCGTATTACTTTGCCCTGTTTCTCGCCGAAGATGAGGAGTCCAAAATTTCACAGTTACAAAAAGCAAACATCGTAAAAGATTGAGATGGGTATTACGTGGAGATAAGTGAAGAGGTCTAATAACACGTAATAGTTATATTTTGTAACTACCAAACAAAGAGAGATAGAGACTGTTGGGTCCTCAATTGGATTTTTTACGTTCACGGAACTAATACCAAATTAAGCTTGCTTAACAATAATAATAATAATAAAAGTAATAAATATTAGAATTTAGAGACCACGAGTCTCCATCATAAATAAATAAATAAATAAATAAATAAATGGAGTCTTAGTCATCAAATCTTCATTCATTGGTGATTCATATCCGTTTGTGGAAGAAAAAAAAGGGAATTAAGTCATTAACTAGTAACTAGTATTCTAGCAGGAAAAGAATGGACATTCTCAAATGACATGAGCACTTAAACATCCTTTATTTTATTATATGAACTATTTTCCCACACCACCAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATGTATGTTTAACAGAGTAAAGTTAGAAAAAGTAGGATAAAAGGTAAAATAGGACCTACAAGCTCTACGATAAAAGGTAAAATAGGATGTACAAGCTCTAGGGTTTCAAGAAGCAAACCTGAAAAATATGCAACAATATTCTATCAACAACAGGGAGCAGCTAAATGGATATTCATTACAAGATTAGCTATACTGAACATGCTATATATCAACGATAGGCTAATGAATTGGGGTGTCACAAATAACCAACAGTATGTCTTATGTAGTGAGGGTATTGAGTCAAGTGAACATCTCTTTTTTACTTGTGATTACTCTAAAAACATATGGACACAGCTGTTATATTGACAAGGAATAACTAGAGACCAGCTAGCACTTGACAAGATGAGCTTGAGTGGGCCAACAGAAATGCACAAGGAAACGGAGCAGCACACCACTATCTTTCGAATGAGCATTGCAGCTGCAGTTAACTATATCTGGACGGAAAGGAATAATCAGGTCTTCCAGGCTAAGTCCAGCAAACCACACATGGTAACCAAAAGAATAGTGCAAGAGAGATGTTCGAAGCATAAGCTTACAAACAAACTAGTAGGACTAGATCACTATGCCTAGACCTTTTGTAGATATGTAGTCTTTGAAGAAATGATTGTTAGTTCATTGTTTGGTTGCCACACCAATACATATTTGTACTGAATGTTAATAAAATAGGACTACTAAACAAAAAATAAGAGCAAGATGAGGGGAGAAATAGGTAACATTCGATTGCACCAAAATTAAAGTTATAATTTAAACAAGGAAAAAGGGTCTGATATACCTCACAACTTTGCCATTTGGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATGACCTTGCCATAATACAAACGGCTCACATATTTAAGTCAAAAAAATAATATATAAGTGAAGATGGGCTATCAACTGGAGTATTATTCACTTCTCATGAGAACATACACTATAGGTTTAAATTGTATTTCATGCATAATTTGATATGTTAATTTTTTGCAACTTTAGCTAATTTGCTGCCACAGTTTACAGATTGGTACAAGTTTGCTACATATGAACCTTGAGCAAATCTTCAACTTGATACATGTAACTCATTGTTGTTCTTATTTGTAAGACTAATCGATATAGGGTCTAATAATCCCTGAACTTAATTAATTTCTACAATGTGTAAAATAGTTTCTTTGCTATTGCAGAACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAG</genome_strand>
        <mrna_strand>GGTTCTGCTTTCAACATCCTCCGGGGTGTTTCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214011" ref_strand="+" ref_description="SGN-E214011 [cLEC-80-J20]">
      <seq>cgccactgaaggacctctggctctatacagaggcatggctgctcctctcgcttccgtcacatttcagaacgccatggtatttcagatttatgcagtgctatctcgagcattggacaggaatgttccagccagtgatccaccctcctacaaaggagtggccttaggtggatttggaacaggagcattacaaagcctaatgctcactcctgtcgaacttgtgaaaattcgacttcagttgcaacagagaaacatcctggataacaaaaatcaaatgactagttgtaagggtccaactgatgtggcaagaaacatattcagacaagaaggatggaggggaatttatcgcggattaacaattacagtcctcagagatgcaccagctcacggcctatatttctggacatacgagtatgtaagagagcaacttcatccaggatgtcgtaagaatggtcaagagagctttagaacaatgcttatagcaggtggtcttgcaggagtagctagctggatatgctgctatcccttagatgttattaaaacccgattccaggctcagtcacaatctacaccattgagatatactggcattgttgattgtttcaggagaagtgtgaaacaagagggatataatgtgctctggagaggtttgggaactgcagttgccagagcatttgtagtgaatggggctatattcactgccctatgaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="32577" stop="36004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32877" g_stop="32943" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32944" i_stop="35060" i_length="2117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35061" g_stop="35704" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="711" r_length="644" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E214011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32877" e_stop="32943"/>
          <exon e_start="35061" e_stop="35704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAGGTCATTCCTTGTTTTTATCCAGCAGTAATTACGGTTTTTACTAATTGTATATATATAAAATTGAAGTTGTCAAAATTTTGAATTCGCATCTGAATCACACGCGTAAAATGAATGTTTATTCATGTATATAAATCAGACTTCTCCCCTGAGTTTCTCCTAGCTAAGCTTATTAGAGCAGGTGGATTCCATCAAACTCATTATATTCAAATAAATATGTTTTATGTTTAAAATTCATAAAAATAAAATTTTAATTTCACTGCGTATTACTTTGCCCTGTTTCTCGCCGAAGATGAGGAGTCCAAAATTTCACAGTTACAAAAAGCAAACATCGTAAAAGATTGAGATGGGTATTACGTGGAGATAAGTGAAGAGGTCTAATAACACGTAATAGTTATATTTTGTAACTACCAAACAAAGAGAGATAGAGACTGTTGGGTCCTCAATTGGATTTTTTACGTTCACGGAACTAATACCAAATTAAGCTTGCTTAACAATAATAATAATAATAAAAGTAATAAATATTAGAATTTAGAGACCACGAGTCTCCATCATAAATAAATAAATAAATAAATAAATAAATGGAGTCTTAGTCATCAAATCTTCATTCATTGGTGATTCATATCCGTTTGTGGAAGAAAAAAAAGGGAATTAAGTCATTAACTAGTAACTAGTATTCTAGCAGGAAAAGAATGGACATTCTCAAATGACATGAGCACTTAAACATCCTTTATTTTATTATATGAACTATTTTCCCACACCACCAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATGTATGTTTAACAGAGTAAAGTTAGAAAAAGTAGGATAAAAGGTAAAATAGGACCTACAAGCTCTACGATAAAAGGTAAAATAGGATGTACAAGCTCTAGGGTTTCAAGAAGCAAACCTGAAAAATATGCAACAATATTCTATCAACAACAGGGAGCAGCTAAATGGATATTCATTACAAGATTAGCTATACTGAACATGCTATATATCAACGATAGGCTAATGAATTGGGGTGTCACAAATAACCAACAGTATGTCTTATGTAGTGAGGGTATTGAGTCAAGTGAACATCTCTTTTTTACTTGTGATTACTCTAAAAACATATGGACACAGCTGTTATATTGACAAGGAATAACTAGAGACCAGCTAGCACTTGACAAGATGAGCTTGAGTGGGCCAACAGAAATGCACAAGGAAACGGAGCAGCACACCACTATCTTTCGAATGAGCATTGCAGCTGCAGTTAACTATATCTGGACGGAAAGGAATAATCAGGTCTTCCAGGCTAAGTCCAGCAAACCACACATGGTAACCAAAAGAATAGTGCAAGAGAGATGTTCGAAGCATAAGCTTACAAACAAACTAGTAGGACTAGATCACTATGCCTAGACCTTTTGTAGATATGTAGTCTTTGAAGAAATGATTGTTAGTTCATTGTTTGGTTGCCACACCAATACATATTTGTACTGAATGTTAATAAAATAGGACTACTAAACAAAAAATAAGAGCAAGATGAGGGGAGAAATAGGTAACATTCGATTGCACCAAAATTAAAGTTATAATTTAAACAAGGAAAAAGGGTCTGATATACCTCACAACTTTGCCATTTGGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATGACCTTGCCATAATACAAACGGCTCACATATTTAAGTCAAAAAAATAATATATAAGTGAAGATGGGCTATCAACTGGAGTATTATTCACTTCTCATGAGAACATACACTATAGGTTTAAATTGTATTTCATGCATAATTTGATATGTTAATTTTTTGCAACTTTAGCTAATTTGCTGCCACAGTTTACAGATTGGTACAAGTTTGCTACATATGAACCTTGAGCAAATCTTCAACTTGATACATGTAACTCATTGTTGTTCTTATTTGTAAGACTAATCGATATAGGGTCTAATAATCCCTGAACTTAATTAATTTCTACAATGTGTAAAATAGTTTCTTTGCTATTGCAGAACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTG-CCTATGAAACTGC</genome_strand>
        <mrna_strand>CGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCCTATG-AACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369861" ref_strand="+" ref_description="SGN-E369861 [TUS-26-D13](-)">
      <seq>gaactgcagttgccagagcatttgtagtgaatggggctatattcactgcctatgaaactgccttaaggtgccttttcatcaacaacaacaaagaagttcacgcgaatattcaaactgaaaatgcattctaatataggagtaagtagtcattgagctgtgttgtctcattttatattattcattataccaattgtatggtttatacctcaagctgaaatgtaatatcagtcttttcgtatcaactgcacttcctgtggacatggtttaacatccaagattaaaatagtgtaatgtaactttcatttatgtagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="35344" stop="36258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35644" g_stop="35964" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E369861" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35644" e_stop="35964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCTATGAAACTGCCTTAAGGTGCCTTTTCATCAACAACAACAAAGAAGTTCACGCGAATATTCAAACTGAAAATGCATTCTAATATAGGAGTAAGTAGTCATTGAGCTGTGTTGTCTCATTTTATATTATTCATTATACCAATTGTATGGTTTATACCTCAAGCTGAAATGTAATATCAGTCTTTTCGTATCAACTGCACTTCCTGTGGACATGGTTTAACATCCAAGATTAAAATAGTGTAATGTAACTTTCATTTATGTAGTATACTCCAA</genome_strand>
        <mrna_strand>GAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCTATGAAACTGCCTTAAGGTGCCTTTTCATCAACAACAACAAAGAAGTTCACGCGAATATTCAAACTGAAAATGCATTCTAATATAGGAGTAAGTAGTCATTGAGCTGTGTTGTCTCATTTTATATTATTCATTATACCAATTGTATGGTTTATACCTCAAGCTGAAATGTAATATCAGTCTTTTCGTATCAACTGCACTTCCTGTGGACATGGTTTAACATCCAAGATTAAAATAGTGTAATGTAACTTTCATTTATGTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342775" ref_strand="+" ref_description="SGN-E342775 [cTOF-7-K8]">
      <seq>aagaatcagtaaacaacacgaggaaagtacagaaagaaaaaatggaagatgcattgcttcgaaacacaagtaaaggtgaggtattagtacagaagatgaaggaactagagatgatggatgaggaagatttggatcaaatgatggacataaaagaagttctctactactactcttacctaaaatgtccagtttaccttgacattgttgacaggtatttcatggacatgtataatgagttatcacttccacagacattcatcaatgtcaacagttaaatgttaagtcttggtcacattaagctctagaaactacagagaaaatgtttttgcttactaatgaaagttttcgagcttagctaacttcttttgtctgttaattgccatgccatgtacttctatattgaaaaatttcagaaaacctcattagatctgagttaatttctcagacgatcattcaactagtagttattacctcagaaaattggaatcaagaagtaaagtgactttcagagttgacatttattaattgaatgaccatatgaggaatcaaccctattcgatttgtatttcttgagcatgtttctttacaatgtcaaataagttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="37142" stop="35936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36842" g_stop="36236" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E342775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36842" e_stop="36236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</genome_strand>
        <mrna_strand>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722892" ref_strand="+" ref_description="SGN-E722892 [FC18CF11]">
      <seq>cccatggggatccgatgataagcactgcctagatcgccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcaaaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccccaaaaggggcccccttgaatttttttagggccccccaaaaaattgggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43832" stop="75707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44139" g_stop="44223" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="101" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="237" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="339" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46200" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="577" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46201" i_stop="47441" i_length="1241">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47442" g_stop="47463" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="599" r_length="22" r_score="0.591"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47464" i_stop="47562" i_length="99">
            <donor d_prob="0.508" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47563" g_stop="47659" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="695" r_length="96" r_score="0.495"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E722892" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44139" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46200"/>
          <exon e_start="47442" e_stop="47463"/>
          <exon e_start="47563" e_stop="47659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAA</genome_strand>
        <mrna_strand>GATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAAAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAAAAAAA...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCAAAAGGGGCCCCCTTGAATTTTTTTAGGGCCCCCCA-AAAAATTGGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344986" ref_strand="+" ref_description="SGN-E344986 [cTOF-22-B1]">
      <seq>ccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43859" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44159" g_stop="44223" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="201" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="303" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="542" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="554"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E344986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44159" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716281" ref_strand="+" ref_description="SGN-E716281 [FB16CE02]">
      <seq>cgcaattctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacgagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaaaaccaatttcagagaatgtactgaagcaactccaaggaagaagggagtatcttctgcttgaggccttcgagacagttacttgagaggctattagtggaagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattagtgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanntttggggggggggggggccgggaccccctttccccttagggggggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43860" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44160" g_stop="44223" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="302" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="537" r_length="235" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46198" i_stop="47866" i_length="1669">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47867" g_stop="47880" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="551" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47881" i_stop="48208" i_length="328">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48209" g_stop="48261" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="602" r_length="51" r_score="0.604"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48262" i_stop="48389" i_length="128">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.209" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48390" g_stop="48417" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="630" r_length="28" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E716281" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44160" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
          <exon e_start="47867" e_stop="47880"/>
          <exon e_start="48209" e_stop="48261"/>
          <exon e_start="48390" e_stop="48417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATACATTTTGTGTGTGTGGGGATGGTTCTTGATTTTGTTCATTCTCCATGAAACACAAAAACTTTAGTCAATTGTTTAAAGCCCTGATGTCTCTGATAATACTAATTTTCATAAAGATCTATATTTTCAATATATCCTTTCTGTCACCGTGTGACAATCTCAAGATTTTCACTAAGGGTATTCAAAATACAA</genome_strand>
        <mrna_strand>CGCAATTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACGAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAAACCAATTTCAGAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAACTCCAAGGAAGAAGGGAGTATCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGAAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAGTGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAANNTT-TG-GGGGGGGGGGGGGCCGGGACCCC................................................................................................................................CTTTCCCCTTAGGGGGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336937" ref_strand="+" ref_description="SGN-E336937 [cTOE-5-K3]">
      <seq>gcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttncataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43861" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44161" g_stop="44223" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="199" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="301" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="540" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="552"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E336937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44161" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTNCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339454" ref_strand="+" ref_description="SGN-E339454 [cTOF-4-B14]">
      <seq>gcagttctcagttgagatagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43861" stop="46495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44161" g_stop="44223" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="199" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="301" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46195" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="534" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E339454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44161" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTT</genome_strand>
        <mrna_strand>GCAGTTCTCAGTTGAGATAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284743" ref_strand="+" ref_description="SGN-E284743 [cLES-3-M3]">
      <seq>gttctcatttgagaaatctcaggaggaggtcgctagggtttgtgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatcttcagaagagccgttgctctgcttgtgcttaccctgctgcccgttaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgttcctcgctggttcaagaccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43864" stop="45114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44164" g_stop="44223" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="196" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44814" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="289" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E284743" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44164" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATT</genome_strand>
        <mrna_strand>GTTCTCATTTGAGAAATCTCAGGAGGAGGTCGCTAGGGTTTGTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTTCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTTAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTTCCTCGCTGGTTCAAGACCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718949" ref_strand="+" ref_description="SGN-E718949 [FC06BC07]">
      <seq>aatcggccgaattggagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43870" stop="116994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44172" g_stop="44223" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="64" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="302" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46200" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="540" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46201" i_stop="47418" i_length="1218">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47419" g_stop="47463" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="585" r_length="45" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47464" i_stop="47562" i_length="99">
            <donor d_prob="0.508" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47563" g_stop="47592" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="615" r_length="30" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E718949" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44172" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46200"/>
          <exon e_start="47419" e_stop="47463"/>
          <exon e_start="47563" e_stop="47592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACA</genome_strand>
        <mrna_strand>TGGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277586" ref_strand="+" ref_description="SGN-E277586 [cLER-6-K20]">
      <seq>ttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaattggagtgtgaaggctatccggagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43872" stop="46453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44172" g_stop="44223" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="188" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="290" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46153" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="481" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E277586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44172" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGT</genome_strand>
        <mrna_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAATTGGAGTGTGAAGGCTATCCGGAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295222" ref_strand="+" ref_description="SGN-E295222 [cLET-20-P16]">
      <seq>ctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43881" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44181" g_stop="44223" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="179" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="281" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="520" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E295222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44181" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>CTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340870" ref_strand="+" ref_description="SGN-E340870 [cTOF-5-L22]">
      <seq>tcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43882" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44182" g_stop="44223" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="178" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46205" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="523" r_length="243" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E340870" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44182" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTG</genome_strand>
        <mrna_strand>TCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716785" ref_strand="+" ref_description="SGN-E716785 [FB18AB02]">
      <seq>ggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43885" stop="75702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44223" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="175" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46204" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="519" r_length="242" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46205" i_stop="46654" i_length="450">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46655" g_stop="46664" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="529" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E716785" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46204"/>
          <exon e_start="46655" e_stop="46664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAG</genome_strand>
        <mrna_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345327" ref_strand="+" ref_description="SGN-E345327 [cTOF-13-P6]">
      <seq>ggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccntnnnnaaaaaaaaaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43885" stop="46499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44223" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="175" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="512" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E345327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715003" ref_strand="+" ref_description="SGN-E715003 [FB13AC03]">
      <seq>caggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccaaaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcggagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataggtcttgttctcgctctctgaattccgccaggaatgtacctttggggggggcgatttgcccgttttccccgcattgggttgattttaaaatctgcaattttaatttgggaccatgaggaatgggatatccttgtactggttatggtgttttaatatattatgtgatacgcgatgtatttggtttgcaataaaagcacttgttggtttttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43887" stop="75702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44223" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46214" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="526" r_length="250" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46215" i_stop="46605" i_length="391">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46606" g_stop="46618" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="539" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46619" i_stop="46696" i_length="78">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.688" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46697" g_stop="46724" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="567" r_length="28" r_score="0.393"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46725" i_stop="46888" i_length="164">
            <donor d_prob="0.561" d_score="0.00"/>
            <acceptor a_prob="0.798" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46889" g_stop="46943" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="620" r_length="53" r_score="0.545"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46944" i_stop="47100" i_length="157">
            <donor d_prob="0.000" d_score="0.56"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47101" g_stop="47120" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="640" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47121" i_stop="47391" i_length="271">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47392" g_stop="47404" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="653" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47405" i_stop="47475" i_length="71">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47476" g_stop="47486" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="663" r_length="10" r_score="0.636"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47487" i_stop="47832" i_length="346">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.594" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="47833" g_stop="47880" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="711" r_length="48" r_score="0.438"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47881" i_stop="48193" i_length="313">
            <donor d_prob="0.997" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="48194" g_stop="48224" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="742" r_length="31" r_score="0.742"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E715003" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46214"/>
          <exon e_start="46606" e_stop="46618"/>
          <exon e_start="46697" e_stop="46724"/>
          <exon e_start="46889" e_stop="46943"/>
          <exon e_start="47101" e_stop="47120"/>
          <exon e_start="47392" e_stop="47404"/>
          <exon e_start="47476" e_stop="47486"/>
          <exon e_start="47833" e_stop="47880"/>
          <exon e_start="48194" e_stop="48224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAA</genome_strand>
        <mrna_strand>CAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAAAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCGGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCAT-AGGTCTT-GTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGAATTC..............................................................................CGCCAGGAATGTACCTTTGGGGGGGGCG....................................................................................................................................................................ATTTGCCCGTTTTCCCCGCATTGGGTTGATTTTAA--AATCTGCAATTTTAATTT.............................................................................................................................................................GGGACCATGAGGAATGGGAT...............................................................................................................................................................................................................................................................................ATCCTTGTACTGG.......................................................................TTATGGTG-TT..........................................................................................................................................................................................................................................................................................................................................................TTAATATATTATGTGATACGCGATGTATTTGGTTTGCAATAAAAGCAC.........................................................................................................................................................................................................................................................................................................................TTGTTGGTTTTTTTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733757" ref_strand="+" ref_description="SGN-E733757 [LB10DD12]">
      <seq>cggtaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43888" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44223" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="511" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="521"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E733757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>CGGTAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298630" ref_strand="+" ref_description="SGN-E298630 [cLET-44-M19]">
      <seq>gaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacaggtacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcacgtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43886" stop="46493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44223" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46193" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="507" r_length="231" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E298630" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGAC</genome_strand>
        <mrna_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGGTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCACGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349413" ref_strand="+" ref_description="SGN-E349413 [cTOS-1-L5]">
      <seq>gaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataacttgttggatctgatctacctgtctagtttttatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43889" stop="46539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44189" g_stop="44223" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46239" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="550" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E349413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44189" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTA</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353038" ref_strand="+" ref_description="SGN-E353038 [cTOS-14-D3]">
      <seq>gaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcagggtcaagaccaatttcagagaaagtactgaagcagctcccaggaagaagggagtagcttctgcttgaggccttccagacagttacttgagaaggtattagtggtagcttccttttgatatttccagtggtagaagcagtaaaattttgggaccctctatcttagtttttattgccctttgaaagaataatgtgcttaaaatttttaaagtatgtgttcccacttggcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43889" stop="46471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44189" g_stop="44223" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46171" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="482" r_length="209" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E353038" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44189" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTT</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGGTCAAGACCAATTTCAGAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCCAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCCAGACAGTTACTTGAGAAGGTATTAGTGGTAGCTTCCTTTTGATATTTCCAGTGGTAGAAGCAGTAAAATTTTGGGACCCTCTATCTTAGTTTTTATTGCCCTTTGAAAGAATAATGTGCTTAAAATTTTTAAAGTATGTGTTCCCACTTGGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317699" ref_strand="+" ref_description="SGN-E317699 [cTOB-8-I18]">
      <seq>gaggtcgctagggtttctgcaactgtatcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgctggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacaggtacttgagaggctattagtggtagcttcatttcgatatttcaagtgctagagcaagttaaagtttgggaccttctatcttagttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43889" stop="46409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44189" g_stop="44223" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46109" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="420" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E317699" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44189" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTA</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTATCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCTGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGGTACTTGAGAGGCTATTAGTGGTAGCTTCATTTCGATATTTCAAGTGCTAGAGCAAGTTAAAGTTTGGGACCTTCTATCTTAGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690184" ref_strand="+" ref_description="SGN-E690184 [LH_Ea02N14]">
      <seq>ccgttgctagggtttctgcaactgtagcgtaatgggtaaggcaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccataagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttatagcaagtaaaattttgggaccttctatcttaggttttactgccctttgaaagattaatgtgcttaaaattttcaaagtatgtgttccaacttggcatttttataaagaagggatcttgagacttccataacttgttggatctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43892" stop="46515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44190" g_stop="44223" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="170" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="272" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46214" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="524" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="536"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E690184" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44190" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTG</genome_strand>
        <mrna_strand>CCGTTGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGCAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCATAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTATAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTACTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACTTGTTGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286831" ref_strand="-" ref_description="SGN-E286831 [cLES-14-D13]">
      <seq>catgggttgctgggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataacttgttggatctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43891" stop="46515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44192" g_stop="44223" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="45" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="181" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46221" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="542" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E286831" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286831" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44192" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACC</genome_strand>
        <mrna_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694024" ref_strand="+" ref_description="SGN-E694024 [LH_Ea02N14](-)">
      <seq>cgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttttgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttaggttttactgccctttgaaagattaatgtgcttaaaattttcaaagtatgtgttccaacttggcatttttataaagaagggatgcttgagacttccataacttgttggatctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43894" stop="75705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44194" g_stop="44223" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="268" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46214" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="521" r_length="253" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46215" i_stop="48208" i_length="1994">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48209" g_stop="48226" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="539" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E694024" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44194" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46214"/>
          <exon e_start="48209" e_stop="48226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGAT-CTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAA</genome_strand>
        <mrna_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTTTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTACTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAAGGGATGCTTGAGACTTCCATAACTTGTTGGATCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309048" ref_strand="+" ref_description="SGN-E309048 [cLEZ-1-G7](-)">
      <seq>cgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43894" stop="75712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44194" g_stop="44223" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="268" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46202" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="508" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46203" i_stop="46654" i_length="452">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46655" g_stop="46676" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="530" r_length="22" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E309048" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44194" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46202"/>
          <exon e_start="46655" e_stop="46676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGT</genome_strand>
        <mrna_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309047" ref_strand="+" ref_description="SGN-E309047 [cLEZ-1-G7]">
      <seq>gctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43895" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44195" g_stop="44223" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="165" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="267" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="502" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="513"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E309047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44195" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712734" ref_strand="+" ref_description="SGN-E712734 [FB05CG01]">
      <seq>ggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43900" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44200" g_stop="44223" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="160" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="497" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="507"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E712734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44200" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712843" ref_strand="+" ref_description="SGN-E712843 [FB05DH10]">
      <seq>ggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="43900" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44200" g_stop="44223" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="160" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46197" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="497" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="507"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E712843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44200" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286923" ref_strand="+" ref_description="SGN-E286923 [cLES-6-C9]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacagctggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagttgtttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggttgtgttggagttggagaaattagagggggagatttctctgtctctgatggtcttgtttgccccaaacctcgccggaatgggcttttcaacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44160" stop="75715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44211" g_stop="44223" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="251" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="491" r_length="240" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46202" i_stop="46506" i_length="305">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46507" g_stop="46525" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="510" r_length="19" r_score="0.684"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46526" i_stop="46654" i_length="129">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.745" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46655" g_stop="46724" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="574" r_length="64" r_score="0.500"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46725" i_stop="46888" i_length="164">
            <donor d_prob="0.561" d_score="0.48"/>
            <acceptor a_prob="0.798" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46889" g_stop="46912" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="598" r_length="24" r_score="0.542"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46913" i_stop="47100" i_length="188">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47101" g_stop="47123" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="621" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E286923" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44211" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
          <exon e_start="46507" e_stop="46525"/>
          <exon e_start="46655" e_stop="46724"/>
          <exon e_start="46889" e_stop="46912"/>
          <exon e_start="47101" e_stop="47123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTT-TTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTA</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAGCTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTGTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAA.................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAAAAAAAAA.................................................................................................................................AAAAAAAAAACTCGAG-GTTGTG-TTGGAGTTGGAGAAATTAG-AGGGGGAGATTTCTCT-GTCT-C-TG....................................................................................................................................................................ATGGTCTTGTTTGCCCCAAACCTC............................................................................................................................................................................................GCCGGAATGGGCTTTTCAACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372262" ref_strand="+" ref_description="SGN-E372262 [TUS-30-L5]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctcgaggttgtgttggagttggagaaattagagggggagatttctctgtctctgatggtcttgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44160" stop="116997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44211" g_stop="44223" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="251" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="490" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46202" i_stop="46557" i_length="356">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46558" g_stop="46569" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="502" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46570" i_stop="46654" i_length="85">
            <donor d_prob="0.543" d_score="0.00"/>
            <acceptor a_prob="0.745" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46655" g_stop="46696" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="543" r_length="41" r_score="0.595"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46697" i_stop="46855" i_length="159">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46856" g_stop="46902" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="587" r_length="44" r_score="0.574"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E372262" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44211" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
          <exon e_start="46558" e_stop="46569"/>
          <exon e_start="46655" e_stop="46696"/>
          <exon e_start="46856" e_stop="46902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGC</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA.....................................................................................AAAAAAAAAAAAAAAACCTCGAG-GTTGTGTTGGAGTTGGAG...............................................................................................................................................................AAATTAGAGGGGGA-GATTTCTCT-GTCTCT-GATGGTCTTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264687" ref_strand="+" ref_description="SGN-E264687 [cLEG-72-I9]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttaggattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagacaaatattagatattgttttcaaccttcattgctaatatgactactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44160" stop="45384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44211" g_stop="44223" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44472" g_stop="44607" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44722" g_stop="45084" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="511" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E264687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44211" e_stop="44223"/>
          <exon e_start="44472" e_stop="44607"/>
          <exon e_start="44722" e_stop="45084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCT</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATA-TTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552423" ref_strand="+" ref_description="SGN-E552423 [cTSB-3-N5]">
      <seq>gggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44171" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44471" g_stop="44607" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="239" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="478" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46202" i_stop="48208" i_length="2007">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48209" g_stop="48228" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="498" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E552423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44471" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
          <exon e_start="48209" e_stop="48228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATA</genome_strand>
        <mrna_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552736" ref_strand="+" ref_description="SGN-E552736 [cTSB-4-N5]">
      <seq>gggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44171" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44471" g_stop="44607" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="239" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="478" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46202" i_stop="48208" i_length="2007">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48209" g_stop="48228" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="498" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E552736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44471" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
          <exon e_start="48209" e_stop="48228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATA</genome_strand>
        <mrna_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551231" ref_strand="+" ref_description="SGN-E551231 [TUS-55-O20]">
      <seq>aagcttccgtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttangattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagaccaatatttagatattgttttcaaccttcattgctaatatgactactacctctttctcatctgttaagttgttcaactgggcacaatgtttaagaagtttaaaaaataatgtgtttttaaagatagaaagttgtcgattcctttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44186" stop="45482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44486" g_stop="44607" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="45182" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="583" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E551231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44486" e_stop="44607"/>
          <exon e_start="44722" e_stop="45182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</genome_strand>
        <mrna_strand>AAGCTTCCGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTANGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACCAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689061" ref_strand="+" ref_description="SGN-E689061 [t3_tus_55_O20]">
      <seq>aagcttccgtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttangattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagaccaatatttagatattgttttcaaccttcattgctaatatgactactacctctttctcatctgttaagttgttcaactgggcacaatgtttaagaagtttaaaaaataatgtgtttttaaagatagaaagttgtcgattcctttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44186" stop="45482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44486" g_stop="44607" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="45182" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="583" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E689061" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44486" e_stop="44607"/>
          <exon e_start="44722" e_stop="45182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</genome_strand>
        <mrna_strand>AAGCTTCCGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTANGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACCAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341393" ref_strand="+" ref_description="SGN-E341393 [cTOE-23-B5]">
      <seq>ccacacactatgggtgcggtgtcgaagactgagcttacatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcatctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagagttagagcaaggaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44213" stop="46487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44513" g_stop="44607" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46187" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="422" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E341393" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44513" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCT</genome_strand>
        <mrna_strand>CCACACACTATGGGTGCGGTGTCGAAGACTGAGCTTACATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCATCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGAGTTAGAGCAAGGAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277480" ref_strand="-" ref_description="SGN-E277480 [cLER-3-I12]">
      <seq>actatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccggagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggtatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44219" stop="75702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44519" g_stop="44607" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="191" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46204" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="433" r_length="242" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46205" i_stop="46654" i_length="450">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46655" g_stop="46665" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="444" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E277480" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44519" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46204"/>
          <exon e_start="46655" e_stop="46665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGT</genome_strand>
        <mrna_strand>ACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGGAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGTATTTTTATAAAGAACGGATCTTGAGACTTCCATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289255" ref_strand="+" ref_description="SGN-E289255 [cLES-18-E18]">
      <seq>ggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44242" stop="46314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44542" g_stop="44607" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="168" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46014" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="220" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E289255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44542" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCG</genome_strand>
        <mrna_strand>GGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234896" ref_strand="+" ref_description="SGN-E234896 [cLEL-6-E2](-)">
      <seq>cgttgctctgcttgtgcttacccttctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagtccaatttcagagaaggtactgaaccagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44265" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44565" g_stop="44607" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44722" g_stop="44823" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="145" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45963" g_stop="46204" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="387" r_length="242" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46205" i_stop="46654" i_length="450">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46655" g_stop="46667" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="400" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E234896" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44565" e_stop="44607"/>
          <exon e_start="44722" e_stop="44823"/>
          <exon e_start="45963" e_stop="46204"/>
          <exon e_start="46655" e_stop="46667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTA</genome_strand>
        <mrna_strand>CGTTGCTCTGCTTGTGCTTACCCTTCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGTCCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAACCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234207" ref_strand="+" ref_description="SGN-E234207 [cLEL-8-J1](-)">
      <seq>caactggaactggccgcataaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaaaaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagtcttcaaaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44455" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44755" g_stop="44823" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45963" g_stop="46200" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="307" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46201" i_stop="46654" i_length="454">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46655" g_stop="46673" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="326" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E234207" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44755" e_stop="44823"/>
          <exon e_start="45963" e_stop="46200"/>
          <exon e_start="46655" e_stop="46673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGA</genome_strand>
        <mrna_strand>CAACTGGAACTGGCCGCATAAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAAAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGTCTTCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349599" ref_strand="+" ref_description="SGN-E349599 [cTOS-1-D2]">
      <seq>tggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44459" stop="46501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44759" g_stop="44823" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45963" g_stop="46206" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="309" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E349599" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44759" e_stop="44823"/>
          <exon e_start="45963" e_stop="46206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGT</genome_strand>
        <mrna_strand>TGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340143" ref_strand="+" ref_description="SGN-E340143 [cTOF-2-G1]">
      <seq>gccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44467" stop="116994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44767" g_stop="44823" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45963" g_stop="46201" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="296" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46202" i_stop="46654" i_length="453">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46655" g_stop="46663" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="305" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46664" i_stop="47562" i_length="899">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47563" g_stop="47592" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="335" r_length="30" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E340143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44767" e_stop="44823"/>
          <exon e_start="45963" e_stop="46201"/>
          <exon e_start="46655" e_stop="46663"/>
          <exon e_start="47563" e_stop="47592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACA</genome_strand>
        <mrna_strand>GCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229343" ref_strand="+" ref_description="SGN-E229343 [cLEL-4-F1](-)">
      <seq>acgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44488" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44788" g_stop="44823" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45963" g_stop="46204" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="278" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46205" i_stop="46654" i_length="450">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46655" g_stop="46667" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="291" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E229343" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44788" e_stop="44823"/>
          <exon e_start="45963" e_stop="46204"/>
          <exon e_start="46655" e_stop="46667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTA</genome_strand>
        <mrna_strand>ACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280689" ref_strand="+" ref_description="SGN-E280689 [cLEL-6-K6](-)">
      <seq>gttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagttagtattgccctttgaaagattaatgtgctctaaaattttaaaagtatgtgttccaacttggcatttttataaagaacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="44501" stop="46481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44801" g_stop="44823" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45963" g_stop="46190" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="250" r_length="227" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E280689" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44801" e_stop="44823"/>
          <exon e_start="45963" e_stop="46190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCT-TAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGA</genome_strand>
        <mrna_strand>GTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTAGTATTGCCCTTTGAAAGATTAATGTGCTCTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAAC--CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229712" ref_strand="-" ref_description="SGN-E229712 [cLEL-4-F1](-)">
      <seq>ttttttttttttttttttatggaagtctcaagatccgttctttataaaaatgccaagttggaacacatacttttaaaattttaagcacattaatctttcaaagggcaataaaaactaagatagaaggtcccaaaattttactttgttctaacacttgaaatatcaaaatgaagctaccactaatagcctcttaagtaactgtctcgaaggcctcaagcagaagctactcccttttttcttggagctgcttcagtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="116987" stop="45661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47462" g_stop="47447" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47446" i_stop="46202" i_length="1245">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46201" g_stop="45961" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="258" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E229712" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47462" e_stop="47447"/>
          <exon e_start="46201" e_stop="45961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATTTTTCTTAATTTCCTTAGAGGTTATTTCTTTATTTTCGAGGTAATGATATCCAGTAATAGTATTCGGAAGTTTTGCTATAATGTGAATCAGTACAGTCATGATTTATATATTTATTTGTTAATCAATTAATTGTGTGTGATCCTAAACTAGTTGAGATTGATTATGAGTTATGACTTTTTACGAGGATCATCTATTTTCATTTAGAGGATTTGTACTCACATAAACATTTTTATAAGATTAAAATTATTCTATTTTTTTTTAAAAAAAAAATTATAAATTACATAGAAGCAAGAAGAGTTATTTATCATTAAATTTACGCGGTTCAGTTGGTACGTTGCATCGCTCAAGGCGGCCTGAGGAATATTTCATTTTTACAGGAAGAGTTAAATGTCATGGCCTGGTTGTTACCCCTTTGCTACTGCGACTTCTTTCATTTAACAATTTTACAAGACTATTGAGATTTTAAACGCCTTACAGTAAAGACTTCTTTCATTAAAAATTTTACAAGACTATTTGAAATTTTAGACGCCTTACCTTCAACCCAATTCGATGCCCTCAACACCATCTAGCAACTAGCAACATTGTGTATTTCTAACATCAGATGTAGAAATTATTTATTAGCACCATGACGGAAATATAAACATTGCACTGAAAGATTCCATTATAGGAGTCGACTCATTTGAGAAAAAAAAATGTCATGGGAGATAATTGGTGAATAACTCAAATCACCTTGTAGCCTAAAGTTAGTTCAGTTAACCTACAACTCCAAAAAAAAACACATCGCTATAACTTCATTTTCCTGAAAACAAGAGAACTTCAAAGAAAAAAAGGAGACAAGATCAGAGAGAAATTTCTTTTATCATGAGAATAATTTCCAGTACTACTTTGTATTTAATGGTGATCCCAGCCGCGCAATATGCCACACTGTTTTTCTTTGCATTGTTTCAGTAACCAAGAAAGAAACGCAAGACTTCAGAGACATACATTTGAATTCATACTGCAAGCTAAACTAATCATCTATGCTAACATTTAACAGGTAACATCACCATACTAAGAACCGGATCAGGCAAATCAGAATAAAAGAACAGCACATTGGGCGTCGTTTATTCATACAGCACCAGATTTGAAATAAGCAAGTTGAACAACCTCAAGGTAACAATAAAATAAATGGAATCATTTCAACATCAACAGATTCAAAAAGGGCAACCACAAGGTAAGATAAAAACTAGACAGGTAGATCAGATCCAACAAGTTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTAC-TTGCTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTCAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTCTTCCTTGGAGCTGCTTCAGTACCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTACTTTGTTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTTAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTTTTTCTTGGAGCTGCTTCAGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372486" ref_strand="+" ref_description="SGN-E372486 [TUS-32-E24](-)">
      <seq>gtaatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatttaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52849" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52549" g_stop="52388" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="289" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="615" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E372486" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52549" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>GTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATTTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294093" ref_strand="+" ref_description="SGN-E294093 [cLET-13-G16]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcanacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52848" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52548" g_stop="52388" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="624"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E294093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52548" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCANACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372487" ref_strand="+" ref_description="SGN-E372487 [TUS-32-E24]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcanagcattgctttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52848" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52548" g_stop="52388" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E372487" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52548" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCANAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292881" ref_strand="+" ref_description="SGN-E292881 [cLET-11-F19]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52848" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52548" g_stop="52388" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="624"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E292881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52548" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734959" ref_strand="+" ref_description="SGN-E734959 [LB14AC01]">
      <seq>actttctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52847" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52546" g_stop="52388" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="286" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="612" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="636"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E734959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52546" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>ACTTTCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739408" ref_strand="+" ref_description="SGN-E739408 [LC17BD04]">
      <seq>ctctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52837" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52538" g_stop="52388" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="278" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="604" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="614"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E739408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52538" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>CTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739031" ref_strand="+" ref_description="SGN-E739031 [LC15DE06]">
      <seq>gtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52838" stop="50970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52538" g_stop="52388" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="278" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51270" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="604" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="614"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E739031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52538" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734274" ref_strand="+" ref_description="SGN-E734274 [LB12BA01]">
      <seq>ggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52807" stop="50984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52507" g_stop="52388" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="247" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51277" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="566" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E734274" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52507" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGC</genome_strand>
        <mrna_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734465" ref_strand="+" ref_description="SGN-E734465 [LB12DA02]">
      <seq>ggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52807" stop="50984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52507" g_stop="52388" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="247" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51277" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="566" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E734465" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52507" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGC</genome_strand>
        <mrna_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734456" ref_strand="+" ref_description="SGN-E734456 [LB12CH05]">
      <seq>ctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52836" stop="50991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52536" g_stop="52388" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="276" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51280" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="592" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E734456" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52536" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCAT</genome_strand>
        <mrna_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346566" ref_strand="+" ref_description="SGN-E346566 [cTOF-28-B9]">
      <seq>tagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgntacaacaagataaatcttctggaaaggtcaaagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52840" stop="50981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52540" g_stop="52388" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51282" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="594" r_length="314" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E346566" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52540" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGC</genome_strand>
        <mrna_strand>TAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGNTACAACAAGATAAATCTTCTGGAAAGGTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339920" ref_strand="+" ref_description="SGN-E339920 [cTOF-3-N19]">
      <seq>tttcctagtctgaagcacagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaatcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcatatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaagagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattctggtattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctgagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52845" stop="50984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52545" g_stop="52388" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="285" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51284" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="597" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E339920" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52545" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAA</genome_strand>
        <mrna_strand>TTTCCTAGTCTGAAGCACAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAATCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCATATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAAGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTCTGGTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTGAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296229" ref_strand="+" ref_description="SGN-E296229 [cLET-24-D11]">
      <seq>ttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52844" stop="50994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52544" g_stop="52388" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="284" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51285" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="595" r_length="311" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E296229" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52544" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAA</genome_strand>
        <mrna_strand>TTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343905" ref_strand="+" ref_description="SGN-E343905 [cTOF-12-F22]">
      <seq>tctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52837" stop="50991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52537" g_stop="52388" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51285" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="588" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E343905" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52537" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAA</genome_strand>
        <mrna_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346614" ref_strand="+" ref_description="SGN-E346614 [cTOF-28-F12]">
      <seq>tctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagantaatcttctgggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52837" stop="50991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52537" g_stop="52388" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51291" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="582" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="596"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E346614" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52537" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</genome_strand>
        <mrna_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGANTAATCTTCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284401" ref_strand="+" ref_description="SGN-E284401 [cLER-16-K10]">
      <seq>gcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttggtattgatggatcatctatataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52815" stop="51055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52515" g_stop="52388" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="255" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51355" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="496" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E284401" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52515" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACA</genome_strand>
        <mrna_strand>GCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGGTATTGATGGATCATCTATATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292672" ref_strand="+" ref_description="SGN-E292672 [cLET-11-I4]">
      <seq>aaaaccataacatattcacaatcacatcattttctgagccacaggtaatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaattctttaccttcattttgttattgatgtatcatctatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52893" stop="51057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52593" g_stop="52388" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51357" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="571" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E292672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52593" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAA</genome_strand>
        <mrna_strand>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAA-TTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283004" ref_strand="+" ref_description="SGN-E283004 [cLER-17-O4]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatactttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgcaccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttgcaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52848" stop="51061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52548" g_stop="52388" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51361" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="523" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E283004" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52548" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTAT</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATACTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCACCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTGCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287884" ref_strand="+" ref_description="SGN-E287884 [cLES-19-D9]">
      <seq>tgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52835" stop="51112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52535" g_stop="52388" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="275" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51412" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="459" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E287884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52535" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGC</genome_strand>
        <mrna_strand>TGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298478" ref_strand="+" ref_description="SGN-E298478 [cLET-41-M19]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgctgctcaagttcttgatattgggaggaggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52848" stop="51167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52548" g_stop="52388" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51467" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="417" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E298478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52548" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATC</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGCTGCTCAAGTTCTTGATATTGGGAGGAGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290601" ref_strand="+" ref_description="SGN-E290601 [cLES-20-P5]">
      <seq>ctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="52836" stop="51476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52536" g_stop="52388" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51902" g_stop="51776" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="276" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51595" g_stop="51581" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="291" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E290601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52536" e_stop="52388"/>
          <exon e_start="51902" e_stop="51776"/>
          <exon e_start="51595" e_stop="51581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAG</genome_strand>
        <mrna_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207264" ref_strand="+" ref_description="SGN-E207264 [cLEC-30-C19]">
      <seq>gccggtcttctgattcccacattcggcttttgctcttattattgttgtggcgtatgtggctgcgtgttcttcactgcccaatctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61152" stop="62290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61452" g_stop="61990" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E207264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61452" e_stop="61990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTAT</genome_strand>
        <mrna_strand>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319553" ref_strand="+" ref_description="SGN-E319553 [cTOB-15-H11]">
      <seq>tggctgcgtgttcttcactgcccaatctgctcccaatagctccaactttctatatcctccatcactgcttaattgctgtttccatttgacaaaatacaaagttcaaattctcacatggcttccatcctattagctaatctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggcactgtcaacacttctacactttcctggcccaccacaagacaaggtcacctggccatcacagcaaaggctactattgaaaggtctgaatccttatcctccccaagtgttgttaaatcactaaagaatatttgggacaaccctgaataccggattgctgtaattgggttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61208" stop="63249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61508" g_stop="61727" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="315" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62949" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="358" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E319553" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61508" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAA</genome_strand>
        <mrna_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTCCAACTTTCTATATCCTCCATCACTGCTTAATTGCTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCACATGGCTTCCATCCTATTAGCTAATCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGCACTGTCAACACTTCTACACTTTCCTGGCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTATTGAAAGGTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCACTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAATACCGGATTGCTGTAATTGGGTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339479" ref_strand="+" ref_description="SGN-E339479 [cTOF-4-L16]">
      <seq>cccaatctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttcaccatccctctctcaatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61228" stop="64491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61528" g_stop="61727" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="295" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="382" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="445" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="483" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64191" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="747" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E339479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61528" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</genome_strand>
        <mrna_strand>CCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245463" ref_strand="+" ref_description="SGN-E245463 [cLEF-43-I21]">
      <seq>gcaggaattcggcacgagtctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccctttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61225" stop="62363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61533" g_stop="62063" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="549" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E245463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61533" e_stop="62063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACT</genome_strand>
        <mrna_strand>TCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCCTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319449" ref_strand="+" ref_description="SGN-E319449 [cTOB-15-J10]">
      <seq>ccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61240" stop="64263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61540" g_stop="61727" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="283" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="63963" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="507" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E319449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61540" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="63963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATC</genome_strand>
        <mrna_strand>CCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548361" ref_strand="+" ref_description="SGN-E548361 [TUS-60-H23](-)">
      <seq>tttccattggacaaaatacaaagttcaaattctcagagggcttcaatggtagtagttaagctgcatcttcttccgcccgccatcaggggcagacaaacccttttgggaactgttaacacttctacacttttggtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttcggggctgcttcaaattttgggggggcaatggacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttggtatacagataccttttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatccagttcatgttgtacttcggtatccaagcatcaccaaaatgctgaatcattttccagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61286" stop="116990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61586" g_stop="61727" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="237" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="324" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="387" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="425" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64173" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="671" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64174" i_stop="65681" i_length="1508">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65682" g_stop="65721" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="711" r_length="40" r_score="0.675"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E548361" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61586" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64173"/>
          <exon e_start="65682" e_stop="65721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAA</genome_strand>
        <mrna_strand>TTTCCATTGGACAAAATACAAAGTTCAAATTCTCAGAGGGCTTCAATGGTAGTAGTTAAGCTGCATCTTCTTCCGCCCGCCATCAGGGGCAGACAAACCCTTTTGGGAACTGTTAACACTTCTACACTTTTGGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCGGGGCTGCTTCAAATTTTGGGGGG........................................................................................................................................................................................................................................................................................................................................................................GCAATGGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTGGTATACAGATACCTTTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATCCAGTTCATGTTGTACTTCGGTATCCAAGCATCACCAAAATGCTGAATCATTTTCCAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718421" ref_strand="+" ref_description="SGN-E718421 [FC04CE01]">
      <seq>gggcgaatggcggccaatcggccgaattgatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61291" stop="116989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61591" g_stop="61727" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="166" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="449" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64105" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="627" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64106" i_stop="65685" i_length="1580">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65686" g_stop="65705" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="647" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E718421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61591" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64105"/>
          <exon e_start="65686" e_stop="65705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACC</genome_strand>
        <mrna_strand>ATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720801" ref_strand="+" ref_description="SGN-E720801 [FC11DE12]">
      <seq>aatcggccgaattccatggggatccgatggacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61288" stop="116994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61598" g_stop="61727" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="162" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="257" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="407" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="445" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64138" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="656" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64139" i_stop="65666" i_length="1528">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65667" g_stop="65722" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="712" r_length="56" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E720801" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61598" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64138"/>
          <exon e_start="65667" e_stop="65722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAAA</genome_strand>
        <mrna_strand>AAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260617" ref_strand="+" ref_description="SGN-E260617 [cLEG-54-C7]">
      <seq>aaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaannnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61305" stop="116994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61605" g_stop="61727" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="305" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="406" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64090" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="569" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64091" i_stop="64937" i_length="847">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64938" g_stop="64991" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="623" r_length="54" r_score="0.574"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E260617" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61605" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64090"/>
          <exon e_start="64938" e_stop="64991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATT</genome_strand>
        <mrna_strand>AAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397325" ref_strand="+" ref_description="SGN-E397325 [TUS-45-B19]">
      <seq>gttcaaattctcagatgtcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcttttttctgcctctcattccaggtgtgtttgaatttatcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61308" stop="63701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61608" g_stop="61727" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="215" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="302" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63401" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="350" r_length="48" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E397325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61608" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGG</genome_strand>
        <mrna_strand>GTTCAAATTCTCAGATGTCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCTTTTTTCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291874" ref_strand="+" ref_description="SGN-E291874 [cLET-7-N19]">
      <seq>ttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggctgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61309" stop="64383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61609" g_stop="61727" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="214" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="301" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="364" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="402" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64083" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="556" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E291874" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61609" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATG</genome_strand>
        <mrna_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGC--TGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328456" ref_strand="+" ref_description="SGN-E328456 [cTOC-21-J2]">
      <seq>tcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttactagcaaaagaaatgtttctattccgtatttgttactatagatagaaagtaaatgagcctgtgagcgaggctatcctgaatttgttattgacttttggctactatggaatggaggtggatgaacctgtaaatagaacattcatgaaagttcgtttgatatgcggttacagaaacattaatactgctaaaccaggtaaaattgactttgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61354" stop="62574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61654" g_stop="62274" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E328456" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61654" e_stop="62274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</genome_strand>
        <mrna_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAAGTTCGTTTGATATGCGGTTACAGAAACATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327264" ref_strand="+" ref_description="SGN-E327264 [cTOC-19-K12]">
      <seq>tcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctccattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61354" stop="62364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61654" g_stop="62064" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E327264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61654" e_stop="62064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTA</genome_strand>
        <mrna_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCCATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397324" ref_strand="+" ref_description="SGN-E397324 [TUS-45-B19](-)">
      <seq>catcacgggcagacaaacccttttcggaactgttaacacttgtacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggctgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="61366" stop="75705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61666" g_stop="61727" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62449" g_stop="62543" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="157" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="244" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="345" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63928" g_stop="64090" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="506" r_length="161" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64091" i_stop="65687" i_length="1597">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65688" g_stop="65703" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="522" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E397324" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61666" e_stop="61727"/>
          <exon e_start="62449" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64090"/>
          <exon e_start="65688" e_stop="65703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAA</genome_strand>
        <mrna_strand>CATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTGTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGC--TGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284845" ref_strand="+" ref_description="SGN-E284845 [cLER-19-E8]">
      <seq>aagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccacctnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="62150" stop="64390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62450" g_stop="62543" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62907" g_stop="62993" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="181" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63354" g_stop="63416" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="244" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="282" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63928" g_stop="64090" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="445" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="458"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E284845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62450" e_stop="62543"/>
          <exon e_start="62907" e_stop="62993"/>
          <exon e_start="63354" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC</genome_strand>
        <mrna_strand>AAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287330" ref_strand="+" ref_description="SGN-E287330 [cLES-15-J11]">
      <seq>aaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttcaccatccctctctcaatttcctatggttttctactgtctgccatagtcagactgatccaacgaaaactctttagcaagtttgagttcacgtatataaaccaaaagtgggtaccctaatttgtttatgatttgatatttagtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="63053" stop="64615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63341" g_stop="63416" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63584" g_stop="63621" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="114" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63928" g_stop="64325" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="512" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E287330" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63341" e_stop="63416"/>
          <exon e_start="63584" e_stop="63621"/>
          <exon e_start="63928" e_stop="64325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</genome_strand>
        <mrna_strand>AAATTTTGTGGCGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736160" ref_strand="+" ref_description="SGN-E736160 [LC04CD01]">
      <seq>catatggtgacggtggacgctgaagttcaccgttcctgcagatcgatttctttttcgcccttcccaaaatcttttcatttttattgctccgcttccaagttccaagtgtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaaaaagtgttactgggccaaatgaaagaaaagctgaaattaattcactggcagaagcatcgaaagtcaatgagcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="65521" stop="68896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65820" g_stop="65929" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66111" g_stop="66306" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="306" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68135" g_stop="68596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="768" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E736160" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65820" e_stop="65929"/>
          <exon e_start="66111" e_stop="66306"/>
          <exon e_start="68135" e_stop="68596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATC</genome_strand>
        <mrna_strand>CATATGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAAAAGTGTTACTGGGCCAAATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAAGTCAATGAGCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544365" ref_strand="+" ref_description="SGN-E544365 [TUS-66-K14]">
      <seq>tgtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaagaagtgttactgggccagatgaaagaaaagctgaaattattcactggcagaagcatcgaaagtcaatgagcttgatcaggaaacatctccaggaatcctcaaaagaatattccagagcgangatcatctgaaaacctcgagttggttgttttcccatcatcaaatgctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="65805" stop="68992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65926" g_stop="65929" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66111" g_stop="66306" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="200" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68135" g_stop="68692" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="756" r_length="556" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E544365" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65926" e_stop="65929"/>
          <exon e_start="66111" e_stop="66306"/>
          <exon e_start="68135" e_stop="68692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTAT</genome_strand>
        <mrna_strand>TGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATT-ATTCACTGGCAGAAGCATCGAAAGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCT-CAAAAGAATATTCCAGAGCGANGATCATCTGAAAACCTCGAGTTGGTTGTTTTCCCATCATCAAATGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544372" ref_strand="+" ref_description="SGN-E544372 [TUS-66-K18]">
      <seq>tgtggatgaaggagctttccatgtaatttgagctttggatcgagtgaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataatctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcctgtcttttatggggcaacaaagtgaggggactgctgaagaatctgtagagaaagctgattcgtcaaagcccaccttgcccgcaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaatgatgttgatgcaaaaccaaatcaaatgatatctgctgaagaagaaactgacgaggcaagagctgttgatgtccaactgaattcttctgcggaaccaagttttgatcatgaggaacaaagaagtgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="65805" stop="68830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65926" g_stop="65929" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66111" g_stop="66306" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="200" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68135" g_stop="68530" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="596" r_length="396" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E544372" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65926" e_stop="65929"/>
          <exon e_start="66111" e_stop="66306"/>
          <exon e_start="68135" e_stop="68530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTG</genome_strand>
        <mrna_strand>TGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTGAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAATCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCCTGTCTTTTATGGGGCAACAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGATTCGTCAAAGCCCACCTTGCCCGCAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAATGATGTTGATGCAAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGACGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTGCGGAACCAAGTTTTGATCATGAGGAACAAAGAAGTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306222" ref_strand="+" ref_description="SGN-E306222 [cLEY-13-N3]">
      <seq>gtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="65810" stop="68677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65927" g_stop="65929" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66111" g_stop="66306" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="199" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68135" g_stop="68377" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="442" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E306222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65927" e_stop="65929"/>
          <exon e_start="66111" e_stop="66306"/>
          <exon e_start="68135" e_stop="68377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTC</genome_strand>
        <mrna_strand>GTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740102" ref_strand="+" ref_description="SGN-E740102 [LC20AD11]">
      <seq>cttttatcttgtgggcaatgcttcgattgcatgccagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaagaagtgttactgggccagatgaaagaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcttgatcaggaaacatctccaggaatcctccaaaagaatattccagagcgagaatcatctgaaaacctcgagttggttgtttcccaatcatcaaatgctttatctcaaactgaagttggtatcccgctgcttgttgattcaaaggaaaatactggtaatgatggggaacagaagaaagaagtcactgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="67798" stop="69184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68098" g_stop="68884" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E740102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68098" e_stop="68884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCAT</genome_strand>
        <mrna_strand>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289371" ref_strand="+" ref_description="SGN-E289371 [cLET-3-A9]">
      <seq>gatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcacgaggaacaaagaagcgtgtactgggccagatgaaagaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcttgatcaggaaacatctccaggaatcctccaaaagaatattccagagcgagaatcatctgaaaacctcgagttggttgtttcccaatcatcaaatgctttatctcaaactgaagttggtatcccgctgcttgttgattcaaaggaaaatactggtaatgatggggaacagaagaaagaagtcactgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagattggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="68127" stop="69360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68427" g_stop="69060" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E289371" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68427" e_stop="69060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGT-TACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCT</genome_strand>
        <mrna_strand>GATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCACGAGGAACAAAGAAGCGTGTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGAT--TGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232136" ref_strand="+" ref_description="SGN-E232136 [cLEL-5-B15](-)">
      <seq>atggggaacagaagaaagaagtcactgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacctgtggaggctacccagcgaggaaatgatcaggagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="68450" stop="69487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68750" g_stop="69188" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E232136" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68750" e_stop="69188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAAT</genome_strand>
        <mrna_strand>ATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232636" ref_strand="+" ref_description="SGN-E232636 [cLEL-5-B15](-)">
      <seq>tgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacctgtggaggctacccagcgaggaaatgatcaggagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaatccagtggttgaactggagaagccgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="68475" stop="69487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68775" g_stop="69188" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E232636" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68775" e_stop="69188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAAT</genome_strand>
        <mrna_strand>TGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATCCAGTGGTTGAACTGGAGAAGCCGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544364" ref_strand="+" ref_description="SGN-E544364 [TUS-66-K14](-)">
      <seq>aagaagtcaccatggaatctccttcaggtgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacctgtggaggctacccagcgaggaaatgatcaggagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaggctaaagctgatgaaatagcgaagttgatgaatgagaacgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagcaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="68540" stop="74192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68840" g_stop="69228" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69229" i_stop="70128" i_length="900">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70129" g_stop="70200" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70201" i_stop="71365" i_length="1165">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71366" g_stop="71440" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="536" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72550" g_stop="72664" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="651" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73719" g_stop="73780" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="713" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73866" g_stop="73891" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="739" r_length="26" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E544364" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68840" e_stop="69228"/>
          <exon e_start="70129" e_stop="70200"/>
          <exon e_start="71366" e_stop="71440"/>
          <exon e_start="72550" e_stop="72664"/>
          <exon e_start="73719" e_stop="73780"/>
          <exon e_start="73866" e_stop="73891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAA</genome_strand>
        <mrna_strand>AAGAAGTCACCATGGAATCTCCTTCAGGTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544371" ref_strand="+" ref_description="SGN-E544371 [TUS-66-K18](-)">
      <seq>acggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattccaaggaggtgttagacaagctcaggctaaagctgatgaaatagcgaagttgatgaatgagaacgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagcaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctacagatgagaaagttaagggcacagatcagagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="68808" stop="74090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69108" g_stop="69228" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69229" i_stop="70128" i_length="900">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70129" g_stop="70200" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="193" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70201" i_stop="71365" i_length="1165">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71366" g_stop="71440" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="268" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72550" g_stop="72664" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="383" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73719" g_stop="73780" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="446" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73866" g_stop="73875" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="456" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E544371" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69108" e_stop="69228"/>
          <exon e_start="70129" e_stop="70200"/>
          <exon e_start="71366" e_stop="71440"/>
          <exon e_start="72550" e_stop="72664"/>
          <exon e_start="73719" e_stop="73780"/>
          <exon e_start="73866" e_stop="73875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCT-CAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGC</genome_strand>
        <mrna_strand>ACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTCCAAGGAGGTGTTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTACAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313199" ref_strand="+" ref_description="SGN-E313199 [cTOA-18-N9]">
      <seq>gcatttcatccaacattggaatggctctttattggagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgggcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="71105" stop="76405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71406" g_stop="71440" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="70" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72550" g_stop="72664" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="185" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73719" g_stop="73780" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="247" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73866" g_stop="73913" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="295" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75902" g_stop="76105" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="499" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E313199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71406" e_stop="71440"/>
          <exon e_start="72550" e_stop="72664"/>
          <exon e_start="73719" e_stop="73780"/>
          <exon e_start="73866" e_stop="73913"/>
          <exon e_start="75902" e_stop="76105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTC</genome_strand>
        <mrna_strand>AGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212013" ref_strand="+" ref_description="SGN-E212013 [cLEC-66-P21]">
      <seq>agggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctcagagaggctgaagaccgtgaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctccgcagagaaattgaagatctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="72271" stop="76754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72571" g_stop="72664" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73719" g_stop="73780" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73866" g_stop="73913" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="204" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75902" g_stop="76186" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="489" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76264" g_stop="76323" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="549" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76406" g_stop="76454" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="598" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E212013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72571" e_stop="72664"/>
          <exon e_start="73719" e_stop="73780"/>
          <exon e_start="73866" e_stop="73913"/>
          <exon e_start="75902" e_stop="76186"/>
          <exon e_start="76264" e_stop="76323"/>
          <exon e_start="76406" e_stop="76454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</genome_strand>
        <mrna_strand>AGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307873" ref_strand="+" ref_description="SGN-E307873 [cLEY-20-O19]">
      <seq>aacataatatgaagagtgatgctgcagctctgctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacagagtagagagtataaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="72290" stop="76234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72590" g_stop="72664" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73719" g_stop="73780" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="137" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73866" g_stop="73913" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="185" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75902" g_stop="75934" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="218" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E307873" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72590" e_stop="72664"/>
          <exon e_start="73719" e_stop="73780"/>
          <exon e_start="73866" e_stop="73913"/>
          <exon e_start="75902" e_stop="75934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGG</genome_strand>
        <mrna_strand>AACATAATATGAAGAGTGATGCTGCAGCTCTGCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAGAGTAGAGAGTATAAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331851" ref_strand="+" ref_description="SGN-E331851 [cTOD-7-H9]">
      <seq>gtcaaccccaacctcacgcccaggactggaaatctggatactggacaatttaataaggggtcgaatatcaggaaacaagaattgggatggtctgataccatgtaagaaactcaaccccaaaaaggctagctcaagtggggagggttgcacaagaccagataaggagagattcttcaagagagatgttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctcagagaggctgaagaccgtgaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctccgcagagaaattgaagatctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="75186" stop="76756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75486" g_stop="75669" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75670" i_stop="75901" i_length="232">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75902" g_stop="76186" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="469" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76264" g_stop="76323" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="529" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76406" g_stop="76456" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="580" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E331851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75486" e_stop="75669"/>
          <exon e_start="75902" e_stop="76186"/>
          <exon e_start="76264" e_stop="76323"/>
          <exon e_start="76406" e_stop="76456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACC</genome_strand>
        <mrna_strand>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGAT........................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268961" ref_strand="+" ref_description="SGN-E268961 [cLEI-16-I13]">
      <seq>ttaaagaagatatgctttgtaaagaaatagaagatctccagaaaagatgcgcggccagtgaacgtcgatgtgaggagtggataacacacgttcccgaatttaccagacctcttcttacgcacatagaagtcatgcaggaaacaaactccaaaaaggctgaagcttgggctgctgctgagagaaccttgaattcacgtcttcaggaagccgaggcaaaagctgcggcttcagaagaaaaggagcgatctattaatgaacgcctatctcaaaccctatcccgaatcaatgatcttgaggctcagatatctcgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgtagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcgggaaatacacgaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagacagggccgctcgttctactaattatgtgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="75971" stop="78214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76271" g_stop="76323" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76406" g_stop="76489" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="137" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76490" i_stop="76592" i_length="103">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76593" g_stop="76658" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="203" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76730" g_stop="76828" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="302" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76">
            <donor d_prob="0.378" d_score="0.96"/>
            <acceptor a_prob="0.254" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76905" g_stop="77123" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="521" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77843" g_stop="77914" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E268961" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76271" e_stop="76323"/>
          <exon e_start="76406" e_stop="76489"/>
          <exon e_start="76593" e_stop="76658"/>
          <exon e_start="76730" e_stop="76828"/>
          <exon e_start="76905" e_stop="77123"/>
          <exon e_start="77843" e_stop="77914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAGGTTTCACTGCAGCTGAGATATTATTTTTCATATCCTATATATGGTCATGGTATATGGACCGCTCATTTAGTGTCTATGTTTTATGCCTCTTCATTGATTACAGGAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGAT</genome_strand>
        <mrna_strand>TTAAAGAAGATATGCTTTGTAAAGAAATAGAAGATCTCCAGAAAAGATGCGCG..................................................................................GCCAGTGAACGTCGATGTGAGGAGTGGATAACACACGTTCCCGAATTTACCAGACCTCTTCTTACGCACATAGAAGTCATGCAG.......................................................................................................GAAACAAACTCCAAAAAGGCTGAAGCTTGGGCTGCTGCTGAGAGAACCTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCGGCTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTATCTCAAACCCTATCCCGAATCAATGATCTTGAGGCTCAG............................................................................ATATCTCGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGTAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCGGGAAATACACGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGACAGGGCCGCTCGTTCTACTAATTATGTGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250820" ref_strand="+" ref_description="SGN-E250820 [cLEG-13-M9]">
      <seq>ccagaaaggctgaatcttgggctgttgttgagagaaccttgaattcacgtcttgaggaagccgaggcaaaagctgcgacttcagaagaaaaggagcgatctattaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaaatacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcagaaatctgggatagaaaatgttgcaggaagtttgacacgtagactttcgagtgctaacagcttgagtaggatggaggaaagctattttctgcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="76303" stop="78645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76603" g_stop="76658" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71">
            <donor d_prob="0.933" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76730" g_stop="76828" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76">
            <donor d_prob="0.378" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76905" g_stop="77123" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="374" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77843" g_stop="77954" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="486" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77955" i_stop="78268" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.298" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78269" g_stop="78345" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="563" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E250820" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76603" e_stop="76658"/>
          <exon e_start="76730" e_stop="76828"/>
          <exon e_start="76905" e_stop="77123"/>
          <exon e_start="77843" e_stop="77954"/>
          <exon e_start="78269" e_stop="78345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTACTTGAACCGAGGGACTATCGGAAACAACCTCTCTCTACCTTAACAAGGTAAGGTAGGGGTAGGCTGCGTACCGCCCTCCCCATACCCCACCTGTGGGATTACACTGAGTATTATGTTGTTGCTGCTGCTGCTGACGTTGTTGTTTAACAATCACCTAGTTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCA</genome_strand>
        <mrna_strand>CCAGAAAGGCTGAATCTTGGGCTGTTGTTGAGAGAACCTTGAATTCACGTCTTGAG.......................................................................GAAGCCGAGGCAAAAGCTGCGACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG..........................................................................................................................................................................................................................................................................................................................TTGCAGGAAGTTTGACACGTAGACTTTCGAGTGCTAACAGCTTGAGTAGGATGGAGGAAAGCTATTTTCTGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271782" ref_strand="+" ref_description="SGN-E271782 [cLEM-8-K5]">
      <seq>gctgctgttgagagaaccttgaattcacgtcttcaggaagccgaggcaaaagctgcaactggagaagaaaaggagcgatctattaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaaatacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcagaaatctgggatagaaaatgttgcaggaagtttgacacgcagactttcgagtgctagcagcttgagtagtatggaggaaagctattttctgcaagcatctttggactcgtctgacaatttatctgagcgtagaaatgcattagagggtaatataagtccatactttatgaagagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="76323" stop="78778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76623" g_stop="76658" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76730" g_stop="76828" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="135" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76">
            <donor d_prob="0.378" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76905" g_stop="77123" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="354" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77843" g_stop="77954" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="466" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77955" i_stop="78268" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.298" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78269" g_stop="78478" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="676" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E271782" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76623" e_stop="76658"/>
          <exon e_start="76730" e_stop="76828"/>
          <exon e_start="76905" e_stop="77123"/>
          <exon e_start="77843" e_stop="77954"/>
          <exon e_start="78269" e_stop="78478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTACTTGAACCGAGGGACTATCGGAAACAACCTCTCTCTACCTTAACAAGGTAAGGTAGGGGTAGGCTGCGTACCGCCCTCCCCATACCCCACCTGTGGGATTACACTGAGTATTATGTTGTTGCTGCTGCTGCTGACGTTGTTGTTTAACAATCACCTAGTTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGAC</genome_strand>
        <mrna_strand>GCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCAACTGGAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG..........................................................................................................................................................................................................................................................................................................................TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357256" ref_strand="+" ref_description="SGN-E357256 [cLHT-17-J18]">
      <seq>ttaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacgcagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaattacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcagaaatctgggatagaaaatggtagttaataccaaatttagttttcaatatgatgcttcatacatttatgttattgctactgttctcttctccatcatgtttaacattctctattatgtttaacatggttgcttcacttctgtattccccttcccgtacttgatttttcttatgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="76476" stop="78411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76776" g_stop="76828" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76">
            <donor d_prob="0.378" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76905" g_stop="77123" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="272" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77843" g_stop="78111" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E357256" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76776" e_stop="76828"/>
          <exon e_start="76905" e_stop="77123"/>
          <exon e_start="77843" e_stop="78111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTA-T-TGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTAC</genome_strand>
        <mrna_strand>TTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACGCAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAATTACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTATGTTTAACATGGTTGCTTCACTTCTGTATTCCCCTTCCCGTACTTGATTTTTCTTATGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357159" ref_strand="+" ref_description="SGN-E357159 [cLHT-17-J17]">
      <seq>ttaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcacatatcttgtcttagagctgagcaaacgcagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcaggttgaagaggaaattaaagaactcagaaggaaacacaagcaggaattacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcacaaatctgggatagaaaatggtagttaataccaaatttagttttcaatatgatgcttcatacatttatgttattgctactgttctcttctccatcatgtttaacattctctattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="76476" stop="78350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76776" g_stop="76828" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76">
            <donor d_prob="0.378" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76905" g_stop="77123" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="272" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77843" g_stop="78051" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="481" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E357159" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76776" e_stop="76828"/>
          <exon e_start="76905" e_stop="77123"/>
          <exon e_start="77843" e_stop="78051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTT</genome_strand>
        <mrna_strand>TTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAC............................................................................ATATCTTGTCTTAGAGCTGAGCAAACGCAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGGTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAATTACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCACAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236394" ref_strand="-" ref_description="SGN-E236394 [cLED-13-I22]">
      <seq>gagcgtagaaatgcattagagggtaatataagtccatactttatgaagagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaagctttgtttccaagtgcaattaaagttactgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="78073" stop="81334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78373" g_stop="78480" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78481" i_stop="78717" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78718" g_stop="78777" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="168" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78900" g_stop="79013" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="282" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="357" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80737" g_stop="81038" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="659" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E236394" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236394" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78373" e_stop="78480"/>
          <exon e_start="78718" e_stop="78777"/>
          <exon e_start="78900" e_stop="79013"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</genome_strand>
        <mrna_strand>GAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265183" ref_strand="-" ref_description="SGN-E265183 [cLEI-2-D3]">
      <seq>gagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttacagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="78120" stop="81300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78420" g_stop="78480" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78481" i_stop="78717" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78718" g_stop="78777" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="121" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78900" g_stop="79013" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="235" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="310" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="574" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E265183" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265183" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78420" e_stop="78480"/>
          <exon e_start="78718" e_stop="78777"/>
          <exon e_start="78900" e_stop="79013"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>GAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTACAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298340" ref_strand="-" ref_description="SGN-E298340 [cLET-41-M16]">
      <seq>atccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaccagtgacgtattattggctttaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="78433" stop="116995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78733" g_stop="78777" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78900" g_stop="79013" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="498" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81001" i_stop="81613" i_length="613">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81614" g_stop="81642" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="527" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E298340" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78733" e_stop="78777"/>
          <exon e_start="78900" e_stop="79013"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
          <exon e_start="81614" e_stop="81642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGTTGGCTGTGCCTTGCTGGTTGCAGCTGACATGTTTTGCTTATGTGCTAGGAATTTACACACCCTGACTAATAATATCCAGATTAATTTTGAATCATATTACGTATATGTTTTATTCAAATTTTACAGAGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGATACAAGAAATTCCACTGTTTCACGCCCAGAACAATAAGGCGATACATCATTGATAATTTCTTAAATTTGTCAATAAATTTTATTTGAACACTTAAATAATATATTCTTATTCAATCACAAACTTCAGTCCAAATTTGAAAACACTCGTGTGTGTTTCGAGAGTTCATATCAACCTTTTTAATTATATCCATTCACTGAAACAAACTTGAGTTTTCGCGGCTTATTGAAATCAATGTTTTAAGTATGTAACTTATTCATGCAATGAATTTTTAAAAGTACACGTTAATCAAAAAATGTTTCGATGGTCAAGAACATAGGTGTACAAATTTACGCTGATTTGAAAATTATGTGACACAAAGTAGAAGAGAGGAGGGATGACGCGTCACGTCATCATAGGATGAGAGCCGAAGAAAAGGAAAAAGCAACAAGATTGGAGC</genome_strand>
        <mrna_strand>ATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTACCAGTGACGTATTATTGGCTTTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273226" ref_strand="-" ref_description="SGN-E273226 [cLEM-24-G19]">
      <seq>aaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="78598" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78763" g_stop="78777" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78900" g_stop="79013" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="129" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="204" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="468" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81001" i_stop="81615" i_length="615">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81616" g_stop="81633" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="486" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E273226" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78763" e_stop="78777"/>
          <exon e_start="78900" e_stop="79013"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
          <exon e_start="81616" e_stop="81633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGTTGGCTGTGCCTTGCTGGTTGCAGCTGACATGTTTTGCTTATGTGCTAGGAATTTACACACCCTGACTAATAATATCCAGATTAATTTTGAATCATATTACGTATATGTTTTATTCAAATTTTACAGAGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGATACAAGAAATTCCACTGTTTCACGCCCAGAACAATAAGGCGATACATCATTGATAATTTCTTAAATTTGTCAATAAATTTTATTTGAACACTTAAATAATATATTCTTATTCAATCACAAACTTCAGTCCAAATTTGAAAACACTCGTGTGTGTTTCGAGAGTTCATATCAACCTTTTTAATTATATCCATTCACTGAAACAAACTTGAGTTTTCGCGGCTTATTGAAATCAATGTTTTAAGTATGTAACTTATTCATGCAATGAATTTTTAAAAGTACACGTTAATCAAAAAATGTTTCGATGGTCAAGAACATAGGTGTACAAATTTACGCTGATTTGAAAATTATGTGACACAAAGTAGAAGAGAGGAGGGATGACGCGTCACGTCATCATAGGATGAGAGCCGAAGAAAAGGAAAAAGCAACAA</genome_strand>
        <mrna_strand>AAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241301" ref_strand="-" ref_description="SGN-E241301 [cLED-26-D20]">
      <seq>agtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaagctttgtttccaagtgcaattaaagttactgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="78598" stop="81334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78898" g_stop="79013" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="191" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80737" g_stop="81038" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="493" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E241301" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78898" e_stop="79013"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</genome_strand>
        <mrna_strand>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343118" ref_strand="+" ref_description="SGN-E343118 [cTOF-17-C22]">
      <seq>ggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="80276" stop="81300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80431" g_stop="80434" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80435" i_stop="80577" i_length="143">
            <donor d_prob="0.722" d_score="0.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80578" g_stop="80652" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="79" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="343" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E343118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80431" e_stop="80434"/>
          <exon e_start="80578" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>GGAG...............................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229991" ref_strand="+" ref_description="SGN-E229991 [cLEL-33-P11](-)">
      <seq>tgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggaggaagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="80295" stop="81300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80595" g_stop="80652" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="322" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="336"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E229991" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80595" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>TGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGAAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230213" ref_strand="+" ref_description="SGN-E230213 [cLEL-33-P11](-)">
      <seq>aaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="80334" stop="81300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80634" g_stop="80652" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84">
            <donor d_prob="0.654" d_score="0.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80737" g_stop="81000" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="283" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="298"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E230213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80634" e_stop="80652"/>
          <exon e_start="80737" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>AAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745656" ref_strand="+" ref_description="SGN-E745656 [GI|47105214]">
      <seq>ttttccttttttaattaatttctttctaaaacttcactaccaatatgcaatagctagtgcctcacaaaacgtttcaggaggttggcgtatatgattgggatttttgttacagtaccatagatcagatcacacaatatgagaggtggtggtcttgcagatgcttactccatgtacaagcgtgcatcaactaaagaccagttcactgattatgaagatagagaagaaaatctagatcgtgccgaaaatggtgtgtggaaagaaattggaaacccctcatggaagcggccgttgccacatatactggtggcaattatttcatcactcttgtttggctaccatcttggggtggttaatgacactctagaaagcatgtctttggaccttgacttcagtggcagcaccttggcggaaggtctagttgtgagtacatgtttgggaggtgctcttttgggctctatattcagtggttggatagcagatggggttggtcgtcggagaggctttcaactgtgtgctctaccaatgattataggtgcttctatgagtgccgcaaccagtactcttggagttatgcttcttggaaggttatttgttggaatagggatgggccttggccctgctgttgctgctctctatgttgcagaggtttcaccagcttttgttggaggcacttatgggagtttcactcagatcgccacatgccttgggctcctgggatctcttctcattggaattcctgccaaggatactgctggttggtggcgagtttgcttttggatatccaccattcctgctgcaatacttgctgttttgatggaattctgtgccgagagtcctcactggcttgttaagagaggaagaattgatttagctgaagaagagcttgaaaagcttatgggagcaccacatgttaaatatgccattgcagaaatgtcaaagacagacaaaggagatgaggtggataatgttaggtttggagagctattgtatggtcgccattttaaagtggttttcattggatctgccttatttgctttgcaacaactatctggaataaatgctgtattttatttctcttcaactgtgtttaagaaggctggagtacctacggacactgcaaatacatgtgttgggattgtaaacttaacagggtctattattgcaatgatgttgatggataggcttgggaggaaggtgcttctaattgggagttttttgggcatggcagtcgcaacaggtcttcaagtagcagctgcgagttcatttgtaccaagctttgcagtattatacctatcagttggcgggaccctactgtatgtgttagcattttctttgggtgctggtccagtccccagcctcctgctgtcagagatatttcctggccggattagagcaaaggcaatggctttatgcatggctgcacattgggtcataaattttctggtcggccttctgtttctgccgatgcttgagcatcttggaccacaaatagtttatgcgatctttgcaggattttgcttgtttgcactggcctttgtgaaaaagaatgtggtggaaacgaaagggaaaacattacaggagattgagtttgcccttcttccatctcattagttggtgactagatcacactctatactaaagttcagattggaaaatgttaaggtcctagtgattgaacatccaaattctttgctatagctatttcttgatttgtacaatttcggagtgtgttcataggcaggaaaggcagcaacaatgaacaatcaagataaagattgtcacaaagcgagttttcatagggcaattgtcactctgcttatttttgctgcttttttgctcactccactggtcggtgactattgcctgagggagcatgaaactgcatctgcctcggccagtagtagatcacatatgtactacagagtacctattgttgttatctttgtatacctttcttttaatttttaccttgatctgatttttgtaattagcatgacacggaaaggctactctaaacattccttacagaaataatgttacagattttgaattagcaagatactggtagctgctctgctgtaacaagaaatattggtagtattgtagtatacaattgattaatgttagctgagatttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="81505" stop="99176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81805" g_stop="81884" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81885" i_stop="82015" i_length="131">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82016" g_stop="82167" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="232" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82168" i_stop="82606" i_length="439">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82607" g_stop="82718" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="344" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82719" i_stop="82841" i_length="123">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82842" g_stop="82909" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="412" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82910" i_stop="83243" i_length="334">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.179" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83244" g_stop="83376" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="545" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83377" i_stop="83781" i_length="405">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83782" g_stop="83881" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="645" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83882" i_stop="83945" i_length="64">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83946" g_stop="84058" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="758" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84059" i_stop="84315" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84316" g_stop="84409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="852" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84410" i_stop="85765" i_length="1356">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="85766" g_stop="85919" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="1006" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="85920" i_stop="86007" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="86008" g_stop="86151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1007" r_stop="1150" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="86152" i_stop="86242" i_length="91">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="86243" g_stop="86316" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1224" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="86317" i_stop="86427" i_length="111">
            <donor d_prob="0.048" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="86428" g_stop="86516" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1225" r_stop="1313" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="86517" i_stop="86914" i_length="398">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="86915" g_stop="87029" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1314" r_stop="1428" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="87030" i_stop="88305" i_length="1276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="88306" g_stop="89032" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1429" r_stop="2155" r_length="727" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E745656" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81805" e_stop="81884"/>
          <exon e_start="82016" e_stop="82167"/>
          <exon e_start="82607" e_stop="82718"/>
          <exon e_start="82842" e_stop="82909"/>
          <exon e_start="83244" e_stop="83376"/>
          <exon e_start="83782" e_stop="83881"/>
          <exon e_start="83946" e_stop="84058"/>
          <exon e_start="84316" e_stop="84409"/>
          <exon e_start="85766" e_stop="85919"/>
          <exon e_start="86008" e_stop="86151"/>
          <exon e_start="86243" e_stop="86316"/>
          <exon e_start="86428" e_stop="86516"/>
          <exon e_start="86915" e_stop="87029"/>
          <exon e_start="88306" e_stop="89032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAGGTAATTAACAAGTGTATTATATGTTAATGGCACATAATTAAAGAATGAAATGCAAAAGATTAGATTTTTTATTTATTTTTTTGATTGAAGTATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAGGTACCCCTTACACTGTTTTCTTCCGGATGGATCTAAGATTTAGAAGCATTGTCTACCAATGCAGTATATTCTAGTACAATTTTTTAAGATATTGTACGAGCAGAAAGGAACATGTTAATTTTGCTGCAAATTCATCTGGGGTTAAAGGGGTGTGCATGAGAATGGTTTTTTTTCTTTCTAATTTTAAATAATGCCTAGATCTATAATCTATTTCTCTATGTTGTTCCAAATTATGAAATCATCAAGTTTCAATTTTTATATCTTTTTGCCAAGAAATAAAAATTTGCCAACTTGGTTGAATGATGTCATCCATTTTCCAATTAATAGTATAATACTCTTCTAGTGTACCATTAGCTTAGAGACAACAATAGGACATAACATAAAAGGATATAATTTTGTGTAAATTGACTTTTGATTCTTCTTCCTTGTGTCTATTTAGATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGGGTATGACTGAACTTTCAAATTTGGTTTCTTGCATAAAGCCTACCTTTTTAGTTGGTTAAACATTGACCTTGTTGACCATTTTCTATTTTTATTTTTAAAACTACTTTGGTTTGGTTTATTCAGGGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAGGTATTTTACGCCATTTACCTTAAAGATTCCCCTGCGCCCCAGCTCCTGCCACCTGAACTTCTGTGTGTCCGCCTCTCTAGGAGGATTCTTAATTTTTAGTTGGTGGGGGGAATCCACTACTCATTTGTGACAGAGCATGCTACATTTCAATAACTATAGATGTTATTTTTTATTTTATTTTGTTATATTAATATATACAGTGATCGAGTCCAAGGCAGTGATGTCAATCAAACCTATTGTCTAATACTTGCTTATTCAAAGAAGATTCTCTTCATCTAGTTGCTTAGTTCAATGCCTACAGGGTCCTTCTGATATGATAATTCTATTTTCAAAGGTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAGGTAAAACCTTAATAAACTTTTTACTAGCTATATTACGGCCTTTTCAACTTTGAATGCGACCATGAACATTTACTTTGTAATACCGTCTAAATATTGTGTAGTCTTGAATCCTCTTCTGTTCATTGTATAACCTGCCTTGGATGAATGGATGGTTTAAAAGAAAGTGTATAATCCCTTAGGGGATGCTTAGTCTTGCTATATTTTGCATTGGCAAACTCTCCTGCAGACTTATTCTTAAGAGTCTTGTAAAGGTCATTTATATAGCCAGGGGTGTTTGAGTTTTCTTTTCATGTTTAAGTTATTGAATTATATAACCTGGAGCGAATACGGAAATTTTTAATTCAAATCTATTTCTGTACGAGTTTCCGGAAATTAGCTGAAGGTTCTTCAACTTCATAAATGTAGTGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAGGTATATGATATTATCTTTTGCTCCTAATTCTATCTTTTTAGTTACATTTAATTTGTTTGACCAGGTTTCACCAGCTTTTGTTAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTGGTAAGGATTGTGTGACCTTAATCTTCCTTTTTATTATTAGTAAAATCAATTGATAAGCCTGGCTGATAGGAATGAAGAAAATGTACTATTCCATTTTATCCAGTCACTGTTTGGAATAAACTTTCTTCAGTTTGAGACTGCTAAACTGCTTTTTATGGGAGAATATTAAGAATAAGTCAATTATCCTACATGTTTATAGCATTCCGTTAATTAATTGAGTGATGTGAACTATAACTACTTCTAAAATGATGTCACAGGTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAGGTTGGTTATTAAGCTCATAAGTCATTGAGTGTCTTGCAGTGGATAGAGAAGTGGCATTTGTAAATTCAATTTTTTTGTGAATCTTGCAAATAGTAAAATCTGTTGACAATTCACTAGGTCATCAATTGGAAGAAGCTCTTCTTTATTTCAGTTGACAAGTGAATACCTGAAATGCATATGTGGGCAGTCTGTTTATAAACTACTGCTTGGCTCCTATCTTGAATATATGTTTACAAATCTGTTCTATGTACTCATACTCTAAATTTTAGTACAATCCATTGAATGTTGGGCATTTTAGTGTCTTTTTAACCACGTTCTCTTACAAGGCAACATAATGAAATAACTGAAGGCGATAGAATCTTTACTAATTCCAACAACATTATCCTGATTGCTATCTCTATACATTGATGGGCTTGTGAGCTTCCTGTGCACAATAACTTAGCAGGTTTTAAGTGCAACTCTACTATTGAGAGAAACATTATTGGTTCACTCCTGCCACATTTTGTCTTTGGTCCCTGATACTTGATGTAATACTAGATGTAAGAACAATTAATTGAACCACAATTAAACAAACAAGAAAAGATGCAAGGATATGATTGATAAATAAAAATGAAGGGAATAGACTTCAGAAGAAAAGAAGGGATAATCTAACAATTAAAATACATTAATCATCAGATTCAATCCAAGAGGAAGAGAAATGAACTCATACATGGAAATCCTTACTTAGAGTATTCAAGAAAGGTTCAGTGAAGAGATACCAAGGAAATCTCCTATAAACTCACACAAAGAGTATTTCTCTATCTTCAAAACTTAACTATCCCTAATATGAAGACTAAAAACTATTTATACTAGTCTTGCAAAAATGCCTAGATTAAAAGAATAACCAAATAATTAAAATAGCCACTTGAGCATGTTAGTTGCCTTGAAGTCTTCCTTGCATGCTTCCTTTTATCCTTTAAACTCATGATGGTTGAAAGAATGCTCAAAAGTCCTTGATGACCTATATGGTTGTCGTCATTTCCCTCATGAATATATTTGAGCATGTTACGAACTTTAAAAGCTCTTTTAATGAATCTTCCATGACACTTTGCTCCTCGTGGATGATTGAAAGATTCCAAATCCAAGATAGCCCACACCCTCGTTGTTGATATCAATCCTGCTACCTCAATTTGCATCAATACTAAAGTCAAGACTACACCGTATTTATACCATAATATAGTTAGCGTGTTGTACTTATCAAAATAAAAGCGGGTATATTATTATGGTGCTTCTATGCAGGATATTCTTGATTTACAAACACTCAGCAGCTCATGGTTCTCTAATATAACTCACATTTTATTTCTGGACTTCTCTCAGAGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAGGTAAACATATCCCCTCACCACACAAAACAGGTATAACACTCTTGAATCTGTTAGTCATTTCTCATTTCGCTGTTGCCTATAACATCTACAGGGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATGGTAACCTAATCTTGTTTGCTCAATCCTTTGTGCTTACCATGGCCGGTCTTAGAATCGTGTCACTATATTTTGCTTTCTCATTCTTAAACTTCTGAGTTGTTTTTGGTGCAGGCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACTGTGAGTAATCCACTTCAAGATTGTTGTTGTAGTAGTTGATGCATTAAATATATTGATAGAAAGGACTGGAAATGCTCGTTATGCTTTAATGATTAGATAACTATCAGAGGCTTATAATTCCTTCCTTCTGGGAAAGTTAATTCTTTGTCCAACAAAGAGAAGTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGGGTACTTTCATCCTGCCCTTGATATTTTATTTTATTTTTGCAAATTATTCTCTTTGCTTTGACCTTGGATGAAGAATAGAAGATCCTTTGGAACTTTGTGTCTGACAACTATGATCTATATGACACTACATATTGTTCTTATACGAACCATTCAAGTCTTAATAACTTTTCACATCAGATTCTTCTTTTAATCATTCTTTTGTTTCATCTTTTTTTTTTTTTTGTGGGTGGGTTGGGGTGGAGTGTGTGTGCTGTGGTCCAAACAGATCAAGATGGATGTCGAGGATTCATATGGCCAACTCTTAACTAGTTTGCAGGTTGATGCACAATACTAGTTGTTGAGGGAGGAGAGGAGATGTATTCCCTTATTATTTCCGGTAGTATCTCGGAATTTACACATTTAATCGAAACACATCTCCCATTGGGTACTATATGTTCTAGATTCCCAGTCATTTGAAACGAGTCGCTGCTGAAATGAAAGCATCAGCCACATCCTGCTATTAGGTGTAAGTCAAATAAGATGGGTAGATTCATCCATCACCGTGCGATATTGACTGTCGGATATATATTAAAAAAAAAGAACATTATCCATCACGAGGAAGAGAGCTGTTCTGTCTGCACAATGACACAGTCTACTTAAGTGTTAGTAATAATTAAATCTTGCCCCCTCCACCTCTAACCCCCCCCCCCCCCCCCCTTTTTTTTTTTAACTGCCAAGAACCAGAAAATGAACCATTTAATGTGATGGGGAAATCTAGGGGTATCCTAGTTCATCCCAAAATTTCTAATGCAGTATTCATTTTGTATTCTTAACTTCAAATAAGAATCTAATCTTTGCACATGACCAACCCTTTGACTCTCTGACCCAGTGTTGGATGATCAAAGAGTTTTGTGCTTAAAATAAAATTCTTCCCGGAAGACTTTTGAGTTTTGACATCATTTAAGAGAGATCTAAACCTAGCTGGTAAACTCTATATACTGTTCTAAATACAAATTGATATGAGATAATCTTTTACATCTCAAAATGAAAAAAAAAAATGAGATCAGGCATACTACTTATGTCCTTTCACATTCTGGTTTATGTGTGGTTCAGCTACAGCAGTAATTTAAAATTATTTAAGTGTTCTCAGCACTTTGCTTTTTATTTTAATTGTTGTTGTCATAGCTTTTGTTTTATCCGAAATCTCAAGAAAACATCATAGATTTTGTTAGACTGATGCTTTCATTTCATCTTTCTTTCCCAATGTATTCTTATCGTATATTTTGCTCTTTAACAGGTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAATATTTGTCTTCAGT</genome_strand>
        <mrna_strand>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG...................................................................................................................................GTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG...........................................................................................................................GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG..............................................................................................................................................................................................................................................................................................................................................GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAG................................................................GTTTCACCAGCTTTTGTTGGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG.................................................................................................................................................................................................................................................................GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAG........................................................................................TGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAG...........................................................................................GGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATG...............................................................................................................GCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACT..............................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAAATTTTCTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245688" ref_strand="+" ref_description="SGN-E245688 [cLEF-48-K15]">
      <seq>tagaggcacttatgggagtttcactcagatcgccacatgccttgggctcctgggatctcttctcattggaattcctgccaaggatactgctggttggtggcgagtttgcttttggatatccaccattcctgctgcaatacttgctgttttgatggaattctgtgccgagagtcctcactggcttgttaagagaggaagaattgatttagctgaagaagagcttgaaaagcttatgggagcaccacatgttaaatatgccattgcagaaatgtcaaagacagacaaaggagatgaggtggataatgttaggtttggagagctattgtatggtcgccattttaaaggtataattattgatgatgtgttcccattctgtcaatatttttctgtgtgaataagttgatgaatttataacttttgctgtttgtacagtggttttcattggatctgccttatttgctttgcaacaactatctggaataaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="83663" stop="86363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83963" g_stop="84058" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84059" i_stop="84315" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84316" g_stop="84409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84410" i_stop="85765" i_length="1356">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85766" g_stop="86063" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="488" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E245688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83963" e_stop="84058"/>
          <exon e_start="84316" e_stop="84409"/>
          <exon e_start="85766" e_stop="86063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTGGTAAGGATTGTGTGACCTTAATCTTCCTTTTTATTATTAGTAAAATCAATTGATAAGCCTGGCTGATAGGAATGAAGAAAATGTACTATTCCATTTTATCCAGTCACTGTTTGGAATAAACTTTCTTCAGTTTGAGACTGCTAAACTGCTTTTTATGGGAGAATATTAAGAATAAGTCAATTATCCTACATGTTTATAGCATTCCGTTAATTAATTGAGTGATGTGAACTATAACTACTTCTAAAATGATGTCACAGGTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAGGTTGGTTATTAAGCTCATAAGTCATTGAGTGTCTTGCAGTGGATAGAGAAGTGGCATTTGTAAATTCAATTTTTTTGTGAATCTTGCAAATAGTAAAATCTGTTGACAATTCACTAGGTCATCAATTGGAAGAAGCTCTTCTTTATTTCAGTTGACAAGTGAATACCTGAAATGCATATGTGGGCAGTCTGTTTATAAACTACTGCTTGGCTCCTATCTTGAATATATGTTTACAAATCTGTTCTATGTACTCATACTCTAAATTTTAGTACAATCCATTGAATGTTGGGCATTTTAGTGTCTTTTTAACCACGTTCTCTTACAAGGCAACATAATGAAATAACTGAAGGCGATAGAATCTTTACTAATTCCAACAACATTATCCTGATTGCTATCTCTATACATTGATGGGCTTGTGAGCTTCCTGTGCACAATAACTTAGCAGGTTTTAAGTGCAACTCTACTATTGAGAGAAACATTATTGGTTCACTCCTGCCACATTTTGTCTTTGGTCCCTGATACTTGATGTAATACTAGATGTAAGAACAATTAATTGAACCACAATTAAACAAACAAGAAAAGATGCAAGGATATGATTGATAAATAAAAATGAAGGGAATAGACTTCAGAAGAAAAGAAGGGATAATCTAACAATTAAAATACATTAATCATCAGATTCAATCCAAGAGGAAGAGAAATGAACTCATACATGGAAATCCTTACTTAGAGTATTCAAGAAAGGTTCAGTGAAGAGATACCAAGGAAATCTCCTATAAACTCACACAAAGAGTATTTCTCTATCTTCAAAACTTAACTATCCCTAATATGAAGACTAAAAACTATTTATACTAGTCTTGCAAAAATGCCTAGATTAAAAGAATAACCAAATAATTAAAATAGCCACTTGAGCATGTTAGTTGCCTTGAAGTCTTCCTTGCATGCTTCCTTTTATCCTTTAAACTCATGATGGTTGAAAGAATGCTCAAAAGTCCTTGATGACCTATATGGTTGTCGTCATTTCCCTCATGAATATATTTGAGCATGTTACGAACTTTAAAAGCTCTTTTAATGAATCTTCCATGACACTTTGCTCCTCGTGGATGATTGAAAGATTCCAAATCCAAGATAGCCCACACCCTCGTTGTTGATATCAATCCTGCTACCTCAATTTGCATCAATACTAAAGTCAAGACTACACCGTATTTATACCATAATATAGTTAGCGTGTTGTACTTATCAAAATAAAAGCGGGTATATTATTATGGTGCTTCTATGCAGGATATTCTTGATTTACAAACACTCAGCAGCTCATGGTTCTCTAATATAACTCACATTTTATTTCTGGACTTCTCTCAGAGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</genome_strand>
        <mrna_strand>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG.................................................................................................................................................................................................................................................................GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707810" ref_strand="+" ref_description="SGN-E707810 [FA34AB08]">
      <seq>gtctgtaaagcagctaagagatgaagataagtagtttcggtactgcttctgtggataacagttttcaattgcattctagtcattatgtacttggtaactgttgactctggttaaatcaatgaaagatgagacaattttatgctataggtagctttcttgactattaaggagatactacaaatgcacagatgcaatggccagttgttttcttcaataatgggaaattatttatgttaggtatgtgttagcattttctttgggtgctggtccagtccccagcctcctgctgtcagagatatttcctggccggattagagcaaaggcaatggctttatgcatggctgcacattgggtcataaattttttggtcggccttctgtttctgccgatgcttgagcatcttggaccacaaatagtttatgcgatctttgcaggattttgcttgtttgcactggcttttgtgaaaaagaatgtggtggaaacgaaagggaaaacattacaggagattgagtttgcccttcttccatctcattagttggtgactagatcacactctatactaaagttcagattggaaaatgttaaggtcctagtgattgaacatccaaattctttgctatagctatttcttgatttgtacaatttcggagtgtgttcataggcaggaaaggcagcaacaatgaacaatcaagataaagattgtcacaaagcgagttttcatagggcaattgtcactctgcttatttttgctgcttttttgctcactccactggtcggtgactattgcctgagggagcatgaaactgcatctgcctcggccagtagtagatcacatatgtactacagagtacctattgttgttatctttgtataccttttctttattttttacctgatctgatttttgtaatagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="86378" stop="89173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86678" g_stop="87029" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87030" i_stop="88305" i_length="1276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88306" g_stop="88873" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="918" r_length="566" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E707810" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86678" e_stop="87029"/>
          <exon e_start="88306" e_stop="88873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGGGTACTTTCATCCTGCCCTTGATATTTTATTTTATTTTTGCAAATTATTCTCTTTGCTTTGACCTTGGATGAAGAATAGAAGATCCTTTGGAACTTTGTGTCTGACAACTATGATCTATATGACACTACATATTGTTCTTATACGAACCATTCAAGTCTTAATAACTTTTCACATCAGATTCTTCTTTTAATCATTCTTTTGTTTCATCTTTTTTTTTTTTTTGTGGGTGGGTTGGGGTGGAGTGTGTGTGCTGTGGTCCAAACAGATCAAGATGGATGTCGAGGATTCATATGGCCAACTCTTAACTAGTTTGCAGGTTGATGCACAATACTAGTTGTTGAGGGAGGAGAGGAGATGTATTCCCTTATTATTTCCGGTAGTATCTCGGAATTTACACATTTAATCGAAACACATCTCCCATTGGGTACTATATGTTCTAGATTCCCAGTCATTTGAAACGAGTCGCTGCTGAAATGAAAGCATCAGCCACATCCTGCTATTAGGTGTAAGTCAAATAAGATGGGTAGATTCATCCATCACCGTGCGATATTGACTGTCGGATATATATTAAAAAAAAAGAACATTATCCATCACGAGGAAGAGAGCTGTTCTGTCTGCACAATGACACAGTCTACTTAAGTGTTAGTAATAATTAAATCTTGCCCCCTCCACCTCTAACCCCCCCCCCCCCCCCCCTTTTTTTTTTTAACTGCCAAGAACCAGAAAATGAACCATTTAATGTGATGGGGAAATCTAGGGGTATCCTAGTTCATCCCAAAATTTCTAATGCAGTATTCATTTTGTATTCTTAACTTCAAATAAGAATCTAATCTTTGCACATGACCAACCCTTTGACTCTCTGACCCAGTGTTGGATGATCAAAGAGTTTTGTGCTTAAAATAAAATTCTTCCCGGAAGACTTTTGAGTTTTGACATCATTTAAGAGAGATCTAAACCTAGCTGGTAAACTCTATATACTGTTCTAAATACAAATTGATATGAGATAATCTTTTACATCTCAAAATGAAAAAAAAAAATGAGATCAGGCATACTACTTATGTCCTTTCACATTCTGGTTTATGTGTGGTTCAGCTACAGCAGTAATTTAAAATTATTTAAGTGTTCTCAGCACTTTGCTTTTTATTTTAATTGTTGTTGTCATAGCTTTTGTTTTATCCGAAATCTCAAGAAAACATCATAGATTTTGTTAGACTGATGCTTTCATTTCATCTTTCTTTCCCAATGTATTCTTATCGTATATTTTGCTCTTTAACAGGTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGA</genome_strand>
        <mrna_strand>GTCTGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCTTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTTCTTTATTTTTTACC-TGATCTGATTTTTGTAA-TAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540050" ref_strand="+" ref_description="SGN-E540050 [TUS-60-B24]">
      <seq>ctcgagtttttttttttttttttttgaaaaatctcagctaacattaatcaattgtatactacaatactaccaatatttcttgttacagcagagcagctaccagtatcttgctaattcaaaatctgtaacattatttctgtaaggaatgtttagagtagcctttccgtgtcatgctaattacaaaaatcagatcaaggtaaaaattaaaagaaaggtatacaaagataacaacaataggtactctgtagtacatatgtgatctactactggccgaggcagatgcagtttcatgctccctcaggcaatagtcaccgaccagtggagtgagcaaaaaagcagcaaaaataagcagagtgacaattgccctatgaaaactcgctttgtgacaatctttatcttgattgttcattgttgctgcctttcctgcctatgaacacactccgaaattgtacaaatcaagaaatagctatagcaaagaatttggatgttcaatcactaggaccttaacattttccaatctgaactttagtatagagtgtgatctagtcaccaactaatgagatggaagaagggcaaactcaatctcctgtaatgttttccctttcgtttccaccacattctttttcacaaaggccagtgcaaacaagcaaaatcctgcaaagatcgcataaactatttgtggtccaagatgctcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="116995" stop="88042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89667" g_stop="89645" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89644" i_stop="89019" i_length="626">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89018" g_stop="88342" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="700" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E540050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89667" e_stop="89645"/>
          <exon e_start="89018" e_stop="88342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTTTTGTTTGTTTGATTTGCATTTTAATTATACTATTCTCTTTTTGATTTTGAATCGATGCATCTTTCGAAAACAATCTCTCTAATTGTGAGATTGGCATTGATCAAGTAATATTATTTAGACTATCCTCGTATTATATTTCGCTCTTCAAAGTATTCTCTTCAGAGTCAATCTTTTATCTCTGTGCTAGGAAAATGCCCAAGGTCATATGTAAGACTTGCTGTTAACTTAGAAAATGAACAAAAAAATAATGATATTCAGAAAGGTAGTTATTCAAAGTCAACTTGCAATAGTAGAGACGTGTAGTGCATTAAAACAGAAGATTGAATATCTAATTTTTCAGACTAATTAGCCACTATTTTTCATATAATAAAACAAGACACGTTTATATCATCATTAGATAACCCTAAAGTCAACACATGACTAGATTGTACATATTTTTCATTATGGAATAATCATCTAACATTCAAACTATATCTTGTATGCATAATGATACAAGTCTACAACCAAGACTCACTTTTTTAAATTTCTAAGACATTTCCTGTGAACTTCTAGCAAGAAGCCCACTTGTTTTCAAGAAAACATTTTCCTTCGTACCAAACACACCCAACTGGAAAAATCAATGCAGAAACTGAAGACAAATATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</genome_strand>
        <mrna_strand>CTCGAGTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287627" ref_strand="+" ref_description="SGN-E287627 [cLES-9-I9]">
      <seq>tcgagtttttttttttttttttttgaaaaatctcagctaacattaatcaattgtatactacaatactaccaatatttcttgttacagcagagcagctaccagtatcttgctaattcaaaatctgtaacattatttctgtaaggaatgtttagagtagcctttccgtgtcatgctaattacaaaaatcagatcaaggtaaaaattaaaagaaaggtatacaaagataacaacaataggtactctgtagtacatatgtgatctactactggccgaggcagatgcagtttcatgctccctcaggcaatagtcaccgaccagtggagtgagcaaaaaagcagcaaaaataagcagagtgacaattgccctatgaaaactcgctttgtgacaatctttatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="116994" stop="88341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89668" g_stop="89649" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89648" i_stop="89021" i_length="628">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89020" g_stop="88641" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="400" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E287627" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89668" e_stop="89649"/>
          <exon e_start="89020" e_stop="88641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTTTTTGTTTGTTTGATTTGCATTTTAATTATACTATTCTCTTTTTGATTTTGAATCGATGCATCTTTCGAAAACAATCTCTCTAATTGTGAGATTGGCATTGATCAAGTAATATTATTTAGACTATCCTCGTATTATATTTCGCTCTTCAAAGTATTCTCTTCAGAGTCAATCTTTTATCTCTGTGCTAGGAAAATGCCCAAGGTCATATGTAAGACTTGCTGTTAACTTAGAAAATGAACAAAAAAATAATGATATTCAGAAAGGTAGTTATTCAAAGTCAACTTGCAATAGTAGAGACGTGTAGTGCATTAAAACAGAAGATTGAATATCTAATTTTTCAGACTAATTAGCCACTATTTTTCATATAATAAAACAAGACACGTTTATATCATCATTAGATAACCCTAAAGTCAACACATGACTAGATTGTACATATTTTTCATTATGGAATAATCATCTAACATTCAAACTATATCTTGTATGCATAATGATACAAGTCTACAACCAAGACTCACTTTTTTAAATTTCTAAGACATTTCCTGTGAACTTCTAGCAAGAAGCCCACTTGTTTTCAAGAAAACATTTTCCTTCGTACCAAACACACCCAACTGGAAAAATCAATGCAGAAACTGAAGACAAATATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGA</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284841" ref_strand="+" ref_description="SGN-E284841 [cLER-19-C22]">
      <seq>atactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgagtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgtggctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="89747" stop="97004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90047" g_stop="90247" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90676" g_stop="90747" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="273" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90858" g_stop="91070" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="486" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96666" g_stop="96704" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="525" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E284841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90047" e_stop="90247"/>
          <exon e_start="90676" e_stop="90747"/>
          <exon e_start="90858" e_stop="91070"/>
          <exon e_start="96666" e_stop="96704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACC</genome_strand>
        <mrna_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGAGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTGGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373227" ref_strand="+" ref_description="SGN-E373227 [TUS-31-D3]">
      <seq>tactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgtttgaagttgtatccttaaaactcaaccatattgttggctgtgttagttgtttgaactatgtttttacaaccccaattcgagttagattatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="89748" stop="97220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90048" g_stop="90247" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90676" g_stop="90747" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="272" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90858" g_stop="91070" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="485" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96666" g_stop="96925" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="745" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E373227" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90048" e_stop="90247"/>
          <exon e_start="90676" e_stop="90747"/>
          <exon e_start="90858" e_stop="91070"/>
          <exon e_start="96666" e_stop="96925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCT</genome_strand>
        <mrna_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289118" ref_strand="+" ref_description="SGN-E289118 [cLES-18-O8]">
      <seq>tactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="89748" stop="91012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90048" g_stop="90247" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90676" g_stop="90712" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="237" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E289118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90048" e_stop="90247"/>
          <exon e_start="90676" e_stop="90712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGG</genome_strand>
        <mrna_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373226" ref_strand="+" ref_description="SGN-E373226 [TUS-31-D3](-)">
      <seq>atttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgtttgaagttgtatccttaaaactcaaccatattgttggctgtgttagttgtttgaactatgtttttacaaccccaattcgagttagattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="89752" stop="97220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90052" g_stop="90247" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90676" g_stop="90747" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="268" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90858" g_stop="91070" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="481" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96666" g_stop="96924" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="740" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E373226" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90052" e_stop="90247"/>
          <exon e_start="90676" e_stop="90747"/>
          <exon e_start="90858" e_stop="91070"/>
          <exon e_start="96666" e_stop="96924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCC</genome_strand>
        <mrna_strand>ATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307886" ref_strand="+" ref_description="SGN-E307886 [cLEY-20-G22]">
      <seq>tttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatcttaggcagagagtggtactgaaccagctgcctcacaacctcaacagttccaaggagtacaaagtgtgtatcattcaccatcacacttaacaattggagctccttgtagtactggcttatttgattgacatctggaccaaactaatgctgacatgactgcgtgcttaccttgtgtcacattcggacaaatagctgaagtccttgatgcaagacacatgacatgcccttcggggactttcatatacatactgatgatgcctgctgtctgctctcagtggatcagagggctctacatatgacacccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="89753" stop="91245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90053" g_stop="90247" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90676" g_stop="90747" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="267" r_length="72" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110">
            <donor d_prob="0.610" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90858" g_stop="90945" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="356" r_length="89" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E307886" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90053" e_stop="90247"/>
          <exon e_start="90676" e_stop="90747"/>
          <exon e_start="90858" e_stop="90945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCA-TGGGCTCAAAATATAGAACCCAATT</genome_strand>
        <mrna_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTTAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAACCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCATTCACCATCACACTTAACAATTGGAGCTCCTTGTAGTACTGGCTTATTTGATTGACATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACATGACTGCGTGCTTACCTTGTGTCACATTCGGACAAATAGCTGAAGTCCTTGATGCAAGACACATGA..............................................................................................................CATGCCCTTCGGGGACTTTCATATACATACTGATGATGCCTGCTGTCTGCTCTCAGTGGATCAGAGGGCTCTACATATGACACCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372470" ref_strand="+" ref_description="SGN-E372470 [TUS-32-C4](-)">
      <seq>acccaattgagacaaaaatataatctagtggaagctcattagtcagacatgatttcccatatgttctgtccatgttgctgtttttgtcaagaattcagagagcttggaaacaggggacttgatcccgctctagggtggaatggtatagttggtcagcgacactatgggaaccgacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgttggaagttgtatccttaaaactcagccatattgttggttgtgttatttgtttgaactatgtttttacaacccctattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="90638" stop="116987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90938" g_stop="91070" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96666" g_stop="96904" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="372" r_length="239" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96905" i_stop="97077" i_length="173">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97078" g_stop="97105" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="400" r_length="28" r_score="0.536"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E372470" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90938" e_stop="91070"/>
          <exon e_start="96666" e_stop="96904"/>
          <exon e_start="97078" e_stop="97105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCTCTTGTCTATGTGCTTGCTACAAATAACACCATCAATCAACTATTTATCAATAAATTCGATAATAAGAATCCTCTATGATCATTATGCTCGATGTGAACACATTTTATTCCAAATAATATGTATGATTTAACGAAACAAAAATTGTTCACTAGGAAGCATTAAAACCAAACCATCAAGAAC</genome_strand>
        <mrna_strand>ACCCAATTGAGACAAAAATATAATCTAGTGGAAGCTCATTAGTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTGTTTTTGTCAAGAATTCAGAGAGCTTGGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGGTCAGCGACACTATGGGAACCGACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTGGAAGTTGTATCCTTAAAACTCAGCCATATTGTTGGTTGTGTTATTTGTTTGAACTATGTTTTTACAACCCCTATTCAA.............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398712" ref_strand="+" ref_description="SGN-E398712 [TUS-45-D13](-)">
      <seq>tggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaatgattctcagcacaaaccgatggatttaaggagtagagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgataccggcgccgattattgggctccagctctcggaggaggattttgatgttacgagctgattggattttaagttatatacactgacagtgtaaaaatactgagacgacaacaaactgatgataagacgtatcggagcctctgtgtcctcatggaatgaatgatataacatcacaaagcagtcattctcagtatgaaagtcagagctgactgtttgtgatgctattttgcatttgaaatcgggtcaatgataaagtggtattttccaatgtacaatatggtcctattttcttgaatttcatgaataatcttactaccttacaaggtagttcataactgttgtatatgtaacttggaaatccataggtacaatcaacatatcgtttcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="103122" stop="100433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102820" g_stop="102755" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="73" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102754" i_stop="102261" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102260" g_stop="102192" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="142" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102191" i_stop="101205" i_length="987">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101204" g_stop="100727" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="620" r_length="478" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E398712" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102820" e_stop="102755"/>
          <exon e_start="102260" e_stop="102192"/>
          <exon e_start="101204" e_stop="100727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAATTTTAT</genome_strand>
        <mrna_strand>ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326308" ref_strand="+" ref_description="SGN-E326308 [cTOC-14-I4]">
      <seq>agagatacaggagaagaaagattgcaaaatttgtgttgagagaagagggtgaagaataatcattagtcgagtagcaaatgatggctggaaaccctactaattggtggagcatgatcatgaatggaaacatgcatccacaattatctcatgatcatgatcaacataattcttcttcttctaattctaattctaattcttcacatttttatggagctcataatccaaatcaagattttcctcgttcattgagccaacttcttatgaatggattttgtggtgatgaagaaaagtttggtattagtccttttcatgccgccgggaattcggaagaccaaagtttgaattccgtccatccaacatcatcaacagctaattttagggttcctgttgctgatgtaaagccagaattgtatcatcatcatcatggccacaacgaatttcaaacatcttcatcgctacaagaaaaactcgaattagatactgatcattttaccaggcctttaattgcttctaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="105507" stop="104021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105207" g_stop="104946" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104945" i_stop="104576" i_length="370">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104575" g_stop="104321" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="517" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E326308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105207" e_stop="104946"/>
          <exon e_start="104575" e_stop="104321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTATGTAAATATACAAAACCTTACCCTCTTTCTCTCTCTTTAATTTATTCGTCATGTTTAATCACCTAGCTTGGTTCTAAAGATAATTCAGAATTCGAACTTTATTATATACACATATTATAGGGTATGTAGCTCCTTACCTAGAAAATTTTGATAACTTTCCCTTTGGTTTGAGCTAATAATTGTCATCTTCTTGCTATGAGAAAAAGAAGGATACAAGATCTAGATTAATTAGTGTGATTTTACCAAAGATATATATATATATATTTGATTTGTTTTTTTACTTTTACATAATAGTTCGAGCAGAAAGTAATAAGTTCAATCAGATTTGTATTTTTTTTTCCTTTGTAATTCTCAAATATGTTACTCTACAGGAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTG</genome_strand>
        <mrna_strand>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTAT..................................................................................................................................................................................................................................................................................................................................................................................GAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538001" ref_strand="+" ref_description="SGN-E538001 [TUS-56-O9](-)">
      <seq>ctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaaaagggaagctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactaggtatctagattccttaataaagcttattgttctgctttattgagtgctttaattttttaatagtgtggttgtcccttttcctgtattttacatctcatttgtttatttaattgaaagataattttctcaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="111351" stop="9199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111051" g_stop="111034" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110234" g_stop="110117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="136" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109845" g_stop="109679" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="303" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109124" g_stop="108769" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="659" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108768" i_stop="108441" i_length="328">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.361" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108440" g_stop="108423" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="677" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E538001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111051" e_stop="111034"/>
          <exon e_start="110234" e_stop="110117"/>
          <exon e_start="109845" e_stop="109679"/>
          <exon e_start="109124" e_stop="108769"/>
          <exon e_start="108440" e_stop="108423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAATTGTTGGATCAGTCTACACGCGATTGATTCAATTTTTGATGAAATGACTCTAAAAGTTCTACTTTTAACTTTGATTACGGCAACTTTTGAGAGGAAATCATAAACATAATTTTCATTTCCTTAAGGTTGTCAATTTGCAAATTAGCTAAGGTGAGAAAAAGTGTGTCAGTTAACTTTTGAAATGGGAAATAACAAGGACCTGAAAGATTGAAAACTTACACCCAAATGTATTAAAATACCCTTTTATCACGTGGTTTTAAACATATCACGTGGAAAATTAAAGATAAAGTATTTTAAAAAAAGAAAGGGATTATTCTTTTTGAAACAGACTAAAAAAAATAGGATC</genome_strand>
        <mrna_strand>CTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257786" ref_strand="+" ref_description="SGN-E257786 [cLEG-39-A11]">
      <seq>taagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaaaagggaagctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactaggtatctagattccttaataaagcttattgttctgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="110508" stop="108560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110208" g_stop="110117" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109845" g_stop="109679" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="259" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109124" g_stop="108861" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="523" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="535"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E257786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110208" e_stop="110117"/>
          <exon e_start="109845" e_stop="109679"/>
          <exon e_start="109124" e_stop="108861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTT</genome_strand>
        <mrna_strand>TAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292597" ref_strand="+" ref_description="SGN-E292597 [cLET-16-J16]">
      <seq>ctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="113260" stop="108663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112960" g_stop="112916" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112915" i_stop="111135" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111134" g_stop="111034" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="146" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110234" g_stop="110117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="264" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109845" g_stop="109679" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="431" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109124" g_stop="108963" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="593" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E292597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112960" e_stop="112916"/>
          <exon e_start="111134" e_stop="111034"/>
          <exon e_start="110234" e_stop="110117"/>
          <exon e_start="109845" e_stop="109679"/>
          <exon e_start="109124" e_stop="108963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAA</genome_strand>
        <mrna_strand>CTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247442" ref_strand="+" ref_description="SGN-E247442 [cLEG-3-G19]">
      <seq>gactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="111437" stop="108710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111134" g_stop="111034" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="113" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110234" g_stop="110117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="231" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109845" g_stop="109679" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="398" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109124" g_stop="109010" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="513" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E247442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111134" e_stop="111034"/>
          <exon e_start="110234" e_stop="110117"/>
          <exon e_start="109845" e_stop="109679"/>
          <exon e_start="109124" e_stop="109010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATT</genome_strand>
        <mrna_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251933" ref_strand="+" ref_description="SGN-E251933 [cLEG-14-O23]">
      <seq>gactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="111437" stop="108775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111134" g_stop="111034" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="113" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110234" g_stop="110117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="231" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109845" g_stop="109679" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="398" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109124" g_stop="109075" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="448" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E251933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111134" e_stop="111034"/>
          <exon e_start="110234" e_stop="110117"/>
          <exon e_start="109845" e_stop="109679"/>
          <exon e_start="109124" e_stop="109075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTC</genome_strand>
        <mrna_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274839" ref_strand="+" ref_description="SGN-E274839 [cLEN-13-D4]">
      <seq>attagcaagggtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="113530" stop="109817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113230" g_stop="112916" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112915" i_stop="111135" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111134" g_stop="111034" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="416" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110234" g_stop="110117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="534" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E274839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113230" e_stop="112916"/>
          <exon e_start="111134" e_stop="111034"/>
          <exon e_start="110234" e_stop="110117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276730" ref_strand="+" ref_description="SGN-E276730 [cLEN-14-D2]">
      <seq>attagcaagggtgtattatcaatctgatttggaaggattgacttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgcgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttcatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="113530" stop="110739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113230" g_stop="112916" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112915" i_stop="111135" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111134" g_stop="111039" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="411" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E276730" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113230" e_stop="112916"/>
          <exon e_start="111134" e_stop="111039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACA</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATTATCAATCTGATTTGGAAGGATTGACTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGCGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTCATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344558" ref_strand="+" ref_description="SGN-E344558 [cTOF-14-E5]">
      <seq>ttgtgtctcaaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggnctcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115670" stop="112621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115370" g_stop="115073" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="412" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113898" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="566" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113052" g_stop="112921" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="699" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E344558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115370" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113898"/>
          <exon e_start="113052" e_stop="112921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGG-CTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGNCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274504" ref_strand="+" ref_description="SGN-E274504 [cLEN-11-F21]">
      <seq>attagcaagggtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggatgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtggttctgcttccttttccatgttttttatagtgaggactgcattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatggactcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="113530" stop="112621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113230" g_stop="112921" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E274504" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113230" e_stop="112921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGATGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTGGTTCTGCTTCCTTTTCCATGTTTTTTATAGTGAGGACTGCATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGACTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276731" ref_strand="+" ref_description="SGN-E276731 [cLEN-14-D4]">
      <seq>gtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaagttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="113520" stop="112621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113220" g_stop="112921" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E276731" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113220" e_stop="112921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>GTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAAGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538004" ref_strand="+" ref_description="SGN-E538004 [TUS-56-O9]">
      <seq>gaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115627" stop="112664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115327" g_stop="115073" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="369" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113898" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="523" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113052" g_stop="112964" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="612" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E538004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115327" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113898"/>
          <exon e_start="113052" e_stop="112964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCT</genome_strand>
        <mrna_strand>GAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266391" ref_strand="+" ref_description="SGN-E266391 [cLEI-3-K12]">
      <seq>tgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaagtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115633" stop="112709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115333" g_stop="115073" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="375" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113898" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="529" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113052" g_stop="113009" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="573" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E266391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115333" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113898"/>
          <exon e_start="113052" e_stop="113009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAG</genome_strand>
        <mrna_strand>TGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAAGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307806" ref_strand="+" ref_description="SGN-E307806 [cLEY-20-C5]">
      <seq>gtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="114535" stop="112711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114235" g_stop="114158" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114051" g_stop="113898" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="232" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113052" g_stop="113011" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="274" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E307806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114235" e_stop="114158"/>
          <exon e_start="114051" e_stop="113898"/>
          <exon e_start="113052" e_stop="113011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</genome_strand>
        <mrna_strand>GTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274503" ref_strand="+" ref_description="SGN-E274503 [cLEN-11-F7]">
      <seq>aaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115661" stop="113621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115361" g_stop="115073" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="403" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113921" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="534" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E274503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115361" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACG</genome_strand>
        <mrna_strand>AAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267780" ref_strand="+" ref_description="SGN-E267780 [cLEI-12-F18]">
      <seq>aaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115626" stop="113627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115326" g_stop="115073" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="368" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113927" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="493" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E267780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115326" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGA</genome_strand>
        <mrna_strand>AAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249415" ref_strand="+" ref_description="SGN-E249415 [cLEF-50-N7]">
      <seq>aatgctcaccggggttcccgtacccaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggcccagaaatggacagaaaaaacctagcttcatcctcccctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagaacagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115621" stop="113633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115321" g_stop="115073" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114271" g_stop="114158" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="363" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113933" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="482" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E249415" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115321" e_stop="115073"/>
          <exon e_start="114271" e_stop="114158"/>
          <exon e_start="114051" e_stop="113933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATA</genome_strand>
        <mrna_strand>AATGCTCACCGGGGTTCCCGTACCCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCCAGAAATGGACAGAAAAAACCTAGCTTCATCCTCCCCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAACAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273568" ref_strand="+" ref_description="SGN-E273568 [cLEN-6-D18]">
      <seq>tcaaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttgttcatcgcatatcccactatagttaaaattcattggattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagccattccaatatcaatatccagagttaatcacgtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagatggttaaggtctgttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="115663" stop="113679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115363" g_stop="115073" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115072" i_stop="114268" i_length="805">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114267" g_stop="114158" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="401" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114051" g_stop="113979" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E273568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115363" e_stop="115073"/>
          <exon e_start="114267" e_stop="114158"/>
          <exon e_start="114051" e_stop="113979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCT</genome_strand>
        <mrna_strand>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTGTTCATCGCATATCCCACTATAGTTAAAATTCATTGGATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTCCAATATCAATATCCAGAGTTAATCACGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGATGGTTAAGGTCTGTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545679" ref_strand="+" ref_description="SGN-E545679 [TUS-68-K11]">
      <seq>gtttattgcagcgtttaattaattttagtctcaaaatgccttgtatagcttaggacgttttgacgattcgctcaattgtgggtctattaaggcctatcttgctgaatttatctccaccttgcttttcgtcttcgccggtgttggttctgccattgcctacaataagttgacagcagatgctgctcttgatcctgccggactagttgcggtagcagtttgccatggatttgctctcttcgtggccgtttctattggtgctaacatctccggtggtcacgttaatcccgctgttacttttggtttagctcttggaggccaaattacccttctcaccggcctgttttactgggtggctcagcttttgggcgccatagttgcttgctgcctcctcaagtttgttaccggaggattgactgttccaatccacggtgtggcagctggtgtaggagctactgaaggagttgtaatggaaattatcatcacattcgcgttggtgtacactgtgtacgccacagcagctgaccccaagaagggatcattgggtacaattgcacctattgccattggtttcattgttggtgctaacattttggctgcgggcccattctccggaggttcaatgaatccagcccgttcttttggggcctgcagttgttagtggcaacttcgctggtaactggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="118867" stop="120633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119167" g_stop="119327" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119328" i_stop="119673" i_length="346">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119674" g_stop="119924" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="412" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119925" i_stop="120061" i_length="137">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120062" g_stop="120333" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="685" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E545679" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119167" e_stop="119327"/>
          <exon e_start="119674" e_stop="119924"/>
          <exon e_start="120062" e_stop="120333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACAGTTAATAACTACTCCTTCTTTTTTATATTTTTTCGTCCACTTTTGTTATTTGCCATGTTGCGTTTTCAATACTCAATTTGATTAATTTTTACAGATAAATTAAATTTTATTAGTTTGATATTCAAAAATTATTCGAAAAGTATTATAAATTGTAATTTTTTGCATATCAATATCATGAAAAAAATATATTCTGAGCTGTTGGACAAATTTTTTTTTTATAGTTTCGCACTGGAAAAGGAAACTATAACAATTAAAGTAGACGAAGATAGTAATTTTCGGCACCAATTTCCATGCAACGTAACGCTATTGAACCAAAGTAGCTGATAGATGATTAATTATTCTGCAGATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTGGTAATTAGTTTTCAAATTATGACTTAGTTAGAATTGTGATAACCGATTCCAACTTGTTTGAAACTGAAGCCGTAATTATATATTAAAATTGAATTCAAAAATATCTAAATTTTTTTTATGGTTTTATTTCTACGCAGACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTT-GGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</genome_strand>
        <mrna_strand>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA..........................................................................................................................................................................................................................................................................................................................................................ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTG.........................................................................................................................................ACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTTGGGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310525" ref_strand="+" ref_description="SGN-E310525 [cLEZ-19-I13]">
      <seq>tttattgcagcgtttaattaattttagtctcaaaatgccttgtatagcttaggacgttttgacgattcgctcaattgtgggtctattaaggcctatcttgctgaatttatctccaccttgcttttcgtcttcgccggtgttggttctgccattgcctacaataagttgacagcagatgctgctcttgatcctgccggactagttgcggtagcagtttgccatggatttgctctcttcgtggccgtttctattggtgctaacatctccggtggtcacgttaatcccgctgttacttttggtttagctcttggaggccaaattacccttctcaccggcctgttttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="+" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="118868" stop="120161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119168" g_stop="119327" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119328" i_stop="119673" i_length="346">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119674" g_stop="119861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="348" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="+" ref_id="SGN-E310525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119168" e_stop="119327"/>
          <exon e_start="119674" e_stop="119861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACAGTTAATAACTACTCCTTCTTTTTTATATTTTTTCGTCCACTTTTGTTATTTGCCATGTTGCGTTTTCAATACTCAATTTGATTAATTTTTACAGATAAATTAAATTTTATTAGTTTGATATTCAAAAATTATTCGAAAAGTATTATAAATTGTAATTTTTTGCATATCAATATCATGAAAAAAATATATTCTGAGCTGTTGGACAAATTTTTTTTTTATAGTTTCGCACTGGAAAAGGAAACTATAACAATTAAAGTAGACGAAGATAGTAATTTTCGGCACCAATTTCCATGCAACGTAACGCTATTGAACCAAAGTAGCTGATAGATGATTAATTATTCTGCAGATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGG</genome_strand>
        <mrna_strand>TTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA..........................................................................................................................................................................................................................................................................................................................................................ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377454" ref_strand="+" ref_description="SGN-E377454 [TUS-20-B13](-)">
      <seq>ggtgatatagctacccctgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaaaaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagcttaacttctgtagagtggcaaaaggcgttgcacatataccttataatagccaatgcaagaaactatcagtaagaggaaacagaaacaacgctttttcacaagcacatgtacacacagatcctgctaaatttagttctaaagaaagcaactttgtttttgatcaactgtattttctttaggcgtcatctgacaattgttcatatttatccatggtttaaaacgaagctttcgagttcctaaatttctaattcttgcaatcatctgactatttttcatatttgtacagtgtatacttatgagctcttagtagcattttctttttactgaggagcaggtggatgtttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="123160" stop="121489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122860" g_stop="122813" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122450" g_stop="122391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="108" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122314" g_stop="121800" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="623" r_length="515" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="642"/>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E377454" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122860" e_stop="122813"/>
          <exon e_start="122450" e_stop="122391"/>
          <exon e_start="122314" e_stop="121800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAGAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTCTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</genome_strand>
        <mrna_strand>GGTGATATAGCTACCCCTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAAAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAAAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAAAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTTTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270908" ref_strand="+" ref_description="SGN-E270908 [cLEM-6-P7]">
      <seq>gccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagcttaacttctgtagagtggcaagaggcgttgcacatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="123486" stop="121810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123186" g_stop="123064" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123063" i_stop="122984" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122983" g_stop="122813" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="294" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122450" g_stop="122391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122314" g_stop="122110" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="559" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E270908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123186" e_stop="123064"/>
          <exon e_start="122983" e_stop="122813"/>
          <exon e_start="122450" e_stop="122391"/>
          <exon e_start="122314" e_stop="122110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATAC</genome_strand>
        <mrna_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270909" ref_strand="+" ref_description="SGN-E270909 [cLEM-6-P9]">
      <seq>gccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="123486" stop="121847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123186" g_stop="123064" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123063" i_stop="122984" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122983" g_stop="122813" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="294" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122450" g_stop="122391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122314" g_stop="122147" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="522" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E270909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123186" e_stop="123064"/>
          <exon e_start="122983" e_stop="122813"/>
          <exon e_start="122450" e_stop="122391"/>
          <exon e_start="122314" e_stop="122147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTT</genome_strand>
        <mrna_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377455" ref_strand="+" ref_description="SGN-E377455 [TUS-20-B13]">
      <seq>ggactactgggcagcttatgatagaactggagaagtgcaaaaatttgctgatagaagtgcatctgatcaggcagcatctttgtttagtaaaggtggaatgggttcatccatcatattggacgtgaaagagaagccaatatatcaatatagatccagattgaatcaggccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacacccttattatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="123972" stop="121862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123672" g_stop="123643" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123642" i_stop="123565" i_length="78">
            <donor d_prob="0.452" d_score="0.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123564" g_stop="123429" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123428" i_stop="123187" i_length="242">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123186" g_stop="123064" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123063" i_stop="122984" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122983" g_stop="122813" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="460" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122450" g_stop="122391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122314" g_stop="122162" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="673" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E377455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123672" e_stop="123643"/>
          <exon e_start="123564" e_stop="123429"/>
          <exon e_start="123186" e_stop="123064"/>
          <exon e_start="122983" e_stop="122813"/>
          <exon e_start="122450" e_stop="122391"/>
          <exon e_start="122314" e_stop="122162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTACTGGGCAGCTTATGATAGAACTGGGTATGTTGGATTTAATGACAAAATTTAATCTTCTGTTGCTGAACATTCCAATGATGAGTTGCCTATTCTCTTAAACAGAGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAGGTACAAGCACCAGATTTAATAAATAGGGACTGCTATACTGAGTTTATTCTTTAGTGAATCACTCTTGGTTCAAAATGTCTCGATATCGACTGTCTGTCAAGAAAATGCATCTCTAGGCATAGTTGAAAGTTCTTACTTCATTGATAAAAAATGATCATCTAATATTTGTGTACAACCTCTTAACTCGGCACTCAGTTTCTGAAACCCTTTATAGAGTGGTAATTTCTTTTATCAAATCACAGGCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATG</genome_strand>
        <mrna_strand>GGACTACTGGGCAGCTTATGATAGAACTGG..............................................................................AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG..................................................................................................................................................................................................................................................GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACACCCTTATTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233177" ref_strand="+" ref_description="SGN-E233177 [cLED-6-F7]">
      <seq>ggactactgggcagcttatgatagaactggagaagtgcaaaaatttgctgatagaagtgcatctgatcaggcagcatctttgtttagtaaaggtggaatgggttcatccatcatattggacgtgaaagagaagccaatatatcaatatagatccagattgaatcaggccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0081D06-tFCPV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0081D06.1" temp_strand="-" temp_description="C00HBa0081D06.1  AC218144.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0081D06">
        <position start="123972" stop="122089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123672" g_stop="123643" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123642" i_stop="123565" i_length="78">
            <donor d_prob="0.452" d_score="0.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123564" g_stop="123429" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123428" i_stop="123187" i_length="242">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123186" g_stop="123064" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123063" i_stop="122984" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122983" g_stop="122813" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="460" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122450" g_stop="122391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122314" g_stop="122307" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="528" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0081D06.1" gen_strand="-" ref_id="SGN-E233177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123672" e_stop="123643"/>
          <exon e_start="123564" e_stop="123429"/>
          <exon e_start="123186" e_stop="123064"/>
          <exon e_start="122983" e_stop="122813"/>
          <exon e_start="122450" e_stop="122391"/>
          <exon e_start="122314" e_stop="122307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTACTGGGCAGCTTATGATAGAACTGGGTATGTTGGATTTAATGACAAAATTTAATCTTCTGTTGCTGAACATTCCAATGATGAGTTGCCTATTCTCTTAAACAGAGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAGGTACAAGCACCAGATTTAATAAATAGGGACTGCTATACTGAGTTTATTCTTTAGTGAATCACTCTTGGTTCAAAATGTCTCGATATCGACTGTCTGTCAAGAAAATGCATCTCTAGGCATAGTTGAAAGTTCTTACTTCATTGATAAAAAATGATCATCTAATATTTGTGTACAACCTCTTAACTCGGCACTCAGTTTCTGAAACCCTTTATAGAGTGGTAATTTCTTTTATCAAATCACAGGCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTC</genome_strand>
        <mrna_strand>GGACTACTGGGCAGCTTATGATAGAACTGG..............................................................................AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG..................................................................................................................................................................................................................................................GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>154</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7481" PGL_stop="2666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7481" e_stop="7420"/>
            <exon e_start="6911" e_stop="6723"/>
            <exon e_start="6382" e_stop="6242"/>
            <exon e_start="6144" e_stop="6070"/>
            <exon e_start="5979" e_stop="5803"/>
            <exon e_start="5709" e_stop="5618"/>
            <exon e_start="5524" e_stop="5408"/>
            <exon e_start="4817" e_stop="4703"/>
            <exon e_start="4582" e_stop="4511"/>
            <exon e_start="4013" e_stop="3817"/>
            <exon e_start="3723" e_stop="3630"/>
            <exon e_start="3069" e_stop="2963"/>
            <exon e_start="2710" e_stop="2666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.643" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7481" e_stop="7420" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.980">
            <gDNA_intron_boundary i_start="7419" i_stop="6912" i_length="508"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6911" e_stop="6723" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.643" acc_prob="0.901">
            <gDNA_intron_boundary i_start="6722" i_stop="6383" i_length="340"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6382" e_stop="6242" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.991">
            <gDNA_intron_boundary i_start="6241" i_stop="6145" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6144" e_stop="6070" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6069" i_stop="5980" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5979" e_stop="5803" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.991">
            <gDNA_intron_boundary i_start="5802" i_stop="5710" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5709" e_stop="5618" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5617" i_stop="5525" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5524" e_stop="5408" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.724">
            <gDNA_intron_boundary i_start="5407" i_stop="4818" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4817" e_stop="4703" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.860" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4702" i_stop="4583" i_length="120"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4582" e_stop="4511" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4510" i_stop="4014" i_length="497"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="4013" e_stop="3817" e_length="197"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3816" i_stop="3724" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="3723" e_stop="3630" e_length="94"/>
          </exon>
          <intron i_serial="11" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3629" i_stop="3070" i_length="560"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="3069" e_stop="2963" e_length="107"/>
          </exon>
          <intron i_serial="12" don_prob="0.898" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2962" i_stop="2711" i_length="252"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="2710" e_stop="2666" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7481" stop="7420"/>
              <exon start="6911" stop="6723"/>
              <exon start="6382" stop="6242"/>
              <exon start="6144" stop="6070"/>
              <exon start="5979" stop="5889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7480" stop="7420"/>
              <exon start="6911" stop="6723"/>
              <exon start="6382" stop="6242"/>
              <exon start="6144" stop="6070"/>
              <exon start="5979" stop="5841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6874" stop="6723"/>
              <exon start="6382" stop="6242"/>
              <exon start="6144" stop="6070"/>
              <exon start="5979" stop="5803"/>
              <exon start="5709" stop="5645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6798" stop="6723"/>
              <exon start="6382" stop="6242"/>
              <exon start="6144" stop="6070"/>
              <exon start="5979" stop="5803"/>
              <exon start="5709" stop="5618"/>
              <exon start="5524" stop="5408"/>
              <exon start="4817" stop="4703"/>
              <exon start="4582" stop="4514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4721" stop="4703"/>
              <exon start="4582" stop="4511"/>
              <exon start="4013" stop="3817"/>
              <exon start="3723" stop="3630"/>
              <exon start="3069" stop="2963"/>
              <exon start="2710" stop="2666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA : AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG : GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA : AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT : CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG : GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAA : TGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAG : TGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAG : GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATG : CTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAG : CAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAG : GTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAG : GGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</gDNA_template>
            <first_frame> L  M  E  K  D  C  L  W  R  S  R  N  W  E  L  V  T  Y  T  H  K :   A  *  S  I  T  P  M  E  G  L  L  L  F  V  E  T  V  S  I  S  Y  I  L  L  W  P  G  E  I  G  H  L  A  Q  L  W  N  L  F  G  R  L  M  E  S  M  L  S  E  K  V  L  Q  G  L  R  F  S  A  K  I  S  R :   K  K  R  V  S  A  R  L  S  L  L  S  T  S  M  G  V  P  Y  W  Q  C  A  Q  M  I  S  F  A  F  T  I  G  L  S  A  G  *  Y  D  V  L  M  L  M  S  K :   T  S  T  G  L  T  V  V  I  W  W  L  L  L  V  I  L  H  S  T  Y  *  S  I  I :   V  M  L  S  L  H  I  *  I  V  E  D  L  *  M  N  K  V  L  K  M  L  L  N  F  F  M  R  *  M  N  V  S  E  L  E  F  G  *  E  I  V  S  F  T  T  I  L  L  R  D  *  I  T  V  *  A  A  R :   *  P  Q  C  F  T  *  T  D  P  C  T  C  W  D  I  S  L  I  K  V  E  F  S  *  L  T  K  S  S   : M  S  W  D  I  L  F  C  S  A  *  *  S  T  R  H  L  *  C  V  V  T  G  T  E  L  M  Q  S  Y  H  Q  F  L  R  I  T  I  T   : V  L  L  V  S  W  N  H  G  V  *  L  R  K  H  W  K  L  Q  Q  T  L  T  T  D  L  N  L  P  Y  S  W  V  N  *  K  L  Q  R :   K  S  L  *  *  H  R  V  N  P  N  G  S  S  W  V  N  W  Q  C  L  L  E  C :   W  R  W  Q  R  I  V  *  N  T  L  M  T  *  V  V  C  *  C  F  I  P  R  *  E  M  L  K  E  W  L  N  *  H  L  L  Q  K  S  M  E  E  T  M  L  H  S  F  A  C  S  S  W  V  K  W  K  I  V  F  S  C  W  L  T   : A  T  G  Y  L  R  L  H  L  W  Q  D  L  T  F  Q  V  R  F  L  K  *  L  Q  C  G  G  R  I  L  I  R :   L  T  R  K  Q  Q  K  L  W  L  I  L  K  N  I  P  T  C  L  S  T  G  K  L  H  M  Q  L  K  L  E  S  Q  R  K   : G  V  Y  T  H  Q  Q  Q  I  M  E  I  M  L  I  </first_frame>
            <second_frame>  *  W  R  K  I  A  F  G  G  Q  G  I  G  N  L  *  P  I  P  T   : K  L  K  A  *  P  Q  W  K  V  C  C  C  L  W  R  R  *  V  Y  H  I  Y  C  S  G  L  E  K  *  V  I  W  L  S  S  G  I  C  L  V  V  *  W  R  V  C  Y  P  R  K  Y  F  K  D  *  D  F  Q  Q  K  F  P   : G  K  K  E  Y  P  P  D  F  L  C  *  A  H  L  W  G  Y  L  I  G  N  V  L  K  *  F  H  L  L  L  R  L  D  *  V  Q  V  D  T  T  Y  *  C  *  C  Q   : K  P  L  L  G  *  Q  W  *  S  G  G  Y  C  *  *  Y  F  I  L  H  T  E  V  *   : S  *  C  C  L  C  T  F  R  *  W  K  I  C  R  *  T  R  C  *  R  C  F  *  T  S  L  *  D  K  *  T  C  Q  N  W  N  L  G  R  R  L  F  H  L  Q  Q  F  F  F  E  T  E  L  L  C  R  R  R   : G  D  H  N  V  S  L  R  P  T  H  V  P  A  G  I  S  R  *  S  K  *  S  F  P  D  *  Q  R  V  Q  :  C  R  G  I  Y  S  S  A  Q  L  D  R  V  Q  D  T  C  D  A  W  *  L  G  Q  S  *  C  S  L  T  I  N  S  *  G  S  P  *  Q  :  C  C  S  F  L  G  I  T  G  Y  D  *  G  S  I  G  S  C  N  R  R  *  L  Q  I  *  T  C  H  T  V  G  *  I  R  N  C  K   : G  N  R  C  S  S  T  E  *  I  Q  M  E  A  V  G  *  T  G  N  V  C  W  N   : A  G  D  G  R  G  L  F  E  I  R  *  *  L  E  W  F  A  D  A  L  F  L  V  R  R  C  *  R  N  G  *  I  S  I  S  C  K  R  A  W  K  K  Q  C  C  I  P  L  P  V  P  P  G  *  S  G  R  L  C  S  A  V  G  *  Q  :  Q  P  D  T  *  G  C  I  Y  G  K  I  L  P  S  K  *  G  F  *  N  S  C  N  V  E  E  G  S  *  *   : G  *  P  E  S  S  R  S  F  G  *  S  *  R  I  S  Q  H  V  *  A  L  A  N  C  T  C  S  *  S  *  S  R  R  G  K  :  G  C  I  P  T  S  S  R  L  W  K  L  C  *  * </second_frame>
            <third_frame>   D  G  E  R  L  P  L  A  V  K  E  L  G  T  C  D  L  Y  P  Q  :  S  L  K  H  N  P  N  G  R  F  V  V  V  C  G  D  G  E  Y  I  I  Y  T  A  L  A  W  R  N  R  S  F  G  S  A  L  E  F  V  W  S  S  D  G  E  Y  A  I  R  E  S  T  S  R  I  K  I  F  S  K  N  F  Q  :  E  K  K  S  I  R  P  T  F  S  A  E  H  I  Y  G  G  T  L  L  A  M  C  S  N  D  F  I  C  F  Y  D  W  I  E  C  R  L  I  R  R  I  D  V  N  V  K  :  N  L  Y  W  A  D  S  G  D  L  V  A  I  A  S  D  T  S  F  Y  I  L  K  Y  N  :  R  D  V  V  S  A  H  L  D  S  G  R  S  V  D  E  Q  G  V  E  D  A  F  E  L  L  Y  E  I  N  E  R  V  R  T  G  I  W  V  G  D  C  F  I  Y  N  N  S  S  S  R  L  N  Y  C  V  G  G  E  :  V  T  T  M  F  H  L  D  R  P  M  Y  L  L  G  Y  L  A  N  Q  S  R  V  F  L  I  D  K  E  F  N :   V  V  G  Y  T  L  L  L  S  L  I  E  Y  K  T  L  V  M  R  G  D  W  D  R  A  N  A  V  L  P  S  I  P  K  D  H  H  N  S :   V  A  R  F  L  E  S  R  G  M  I  E  E  A  L  E  V  A  T  D  A  D  Y  R  F  E  L  A  I  Q  L  G  K  L  E  I  A  K  :  E  I  A  V  V  A  Q  S  E  S  K  W  K  Q  L  G  E  L  A  M  S  A  G  M  :  L  E  M  A  E  D  C  L  K  Y  A  N  D  L  S  G  L  L  M  L  Y  S  S  L  G  D  A  E  G  M  A  E  L  A  S  L  A  K  E  H  G  R  N  N  V  A  F  L  C  L  F  L  L  G  K  V  E  D  C  V  Q  L  L  V  D  S :   N  R  I  P  E  A  A  F  M  A  R  S  Y  L  P  S  K  V  S  E  I  V  A  M  W  R  K  D  L  N  K  :  V  N  Q  K  A  A  E  A  L  A  D  P  E  E  Y  P  N  M  F  E  H  W  Q  I  A  H  A  V  E  A  R  V  A  E  E  R :   G  V  Y  P  P  A  A  D  Y  G  N  Y  A  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7479" stop="7420"/>
                    <exon start="6911" stop="6723"/>
                    <exon start="6382" stop="6242"/>
                    <exon start="6144" stop="6070"/>
                    <exon start="5979" stop="5803"/>
                    <exon start="5709" stop="5618"/>
                    <exon start="5524" stop="5408"/>
                    <exon start="4817" stop="4703"/>
                    <exon start="4582" stop="4511"/>
                    <exon start="4013" stop="3817"/>
                    <exon start="3723" stop="3630"/>
                    <exon start="3069" stop="2963"/>
                    <exon start="2710" stop="2668"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1479</number_coding_nucleotides>
                  <number_encoded_amino_acids>493</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAIRESTSRIKIFSKNFQEKKSIRPTFSAEHIYGGTLLAMCSNDFICFYDWIECRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAHLDSGRSVDEQGVEDAFELLYEINERVRTGIWVGDCFIYNNSSSRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDWDRANAVLPSIPKDHHNSVARFLESRGMIEEALEVATDADYRFELAIQLGKLEIAKEIAVVAQSESKWKQLGELAMSAGMLEMAEDCLKYANDLSGLLMLYSSLGDAEGMAELASLAKEHGRNNVAFLCLFLLGKVEDCVQLLVDSNRIPEAAFMARSYLPSKVSEIVAMWRKDLNKVNQKAAEALADPEEYPNMFEHWQIAHAVEARVAEERGVYPPAADYGNYAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21765" PGL_stop="22346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21765" e_stop="22346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="21765" e_stop="22346" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21765" stop="22166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21772" stop="22346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAATTTTCAAT</gDNA_template>
            <first_frame> P  M  C  Y  P  R  E  R  P  G  R  F  V  P  P  D  E  G  Q  R  R  E  Q  V  E  I  Q  V  V  S  R  E  V  S  N  G  N  G  S  S  A  E  A  G  T  M  K  Q  C  V  C  S  P  T  H  H  P  G  S  F  R  C  R  H  H  H  A  D  Y  K  W  A  A  Q  Q  G  T  I  K  T  A  D  H  *  F  P  T  *  T  H  M  *  K  F  M  T  F  I  C  P  V  F  T  L  F  S  T  L  L  H  L  Y  V  C  F  L  Y  P  G  Y  I  K  T  C  N  I  I  T  K  L  S  H  F  Q  E  I  A  Y  K  I  S  N  R  V  D  F  S  D  G  H  L  F  *  K  V  T  F  F  V  E  E  N  L  N  Q  K  K  C  D  F  L  R  *  *  L  L  V  E  *  P  S  E  K  S  T  L  T  H  V  F  Q  I  F  N </first_frame>
            <second_frame>  Q  C  V  T  R  E  N  V  L  D  D  S  F  L  L  M  K  G  R  E  G  N  K  W  R  Y  K  L  *  A  E  K  Y  Q  M  E  M  D  H  Q  L  K  L  E  Q  *  N  N  V  F  V  P  L  H  I  I  Q  A  H  S  G  V  G  I  I  M  L  I  T  N  G  L  L  N  R  E  L  L  R  L  L  I  I  S  S  L  R  E  L  T  C  K  N  S  *  H  S  S  V  L  Y  L  L  Y  F  L  R  F  F  I  Y  M  C  V  F  F  T  L  V  I  L  R  L  V  I  S  L  R  N  *  V  T  F  K  K  *  P  I  K  F  Q  I  E  L  I  S  R  M  V  T  C  F  R  K  S  L  S  L  L  K  K  I  *  I  R  R  N  V  I  F  *  D  N  N  Y  *  L  S  D  H  L  R  N  Q  P  S  H  M  C  F  K  F  S   </second_frame>
            <third_frame>   N  V  L  P  E  R  T  S  W  T  I  R  S  S  *  *  R  A  E  K  G  T  S  G  D  T  S  C  K  Q  R  S  I  K  W  K  W  I  I  S  *  S  W  N  N  E  T  M  C  L  F  P  Y  T  S  S  R  L  I  Q  V  *  A  S  S  C  *  L  Q  M  G  C  S  T  G  N  Y  *  D  C  *  S  L  V  P  Y  V  N  S  H  V  K  I  H  D  I  H  L  S  C  I  Y  F  I  F  Y  A  S  S  S  I  C  V  F  S  L  P  W  L  Y  *  D  L  *  Y  H  Y  E  T  E  S  L  S  R  N  S  L  *  N  F  K  *  S  *  F  L  G  W  S  L  V  L  E  S  H  F  L  C  *  R  K  F  E  S  E  E  M  *  F  S  K  I  I  T  I  S  *  V  T  I  *  E  I  N  P  H  T  C  V  S  N  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21765" stop="22016"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMCYPRERPGRFVPPDEGQRREQVEIQVVSREVSNGNGSSAEAGTMKQCVCSPTHHPGSFRCRHHHADYKWAAQQGTIKTADH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32845" PGL_stop="35964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32845" e_stop="32943"/>
            <exon e_start="35061" e_stop="35964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.970"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="32845" e_stop="32943" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32944" i_stop="35060" i_length="2117"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="35061" e_stop="35964" e_length="904"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32845" stop="32943"/>
              <exon start="35061" stop="35410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32877" stop="32943"/>
              <exon start="35061" stop="35704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35644" stop="35964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCTGCTTTCAACATCCTCCGCCGTGTTGCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG : AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCTATGAAACTGCCTTAAGGTGCCTTTTCATCAACAACAACAAAGAAGTTCACGCGAATATTCAAACTGAAAATGCATTCTAATATAGGAGTAAGTAGTCATTGAGCTGTGTTGTCTCATTTTATATTATTCATTATACCAATTGTATGGTTTATACCTCAAGCTGAAATGTAATATCAGTCTTTTCGTATCAACTGCACTTCCTGTGGACATGGTTTAACATCCAAGATTAAAATAGTGTAATGTAACTTTCATTTATGTAGTATACTCCAA</gDNA_template>
            <first_frame> G  S  A  F  N  I  L  R  R  V  A  A  T  E  G  P  L  A  L  Y  R  G  M  A  A  P  L  A  S  V  T  F  Q  :  N  A  M  V  F  Q  I  Y  A  V  L  S  R  A  L  D  R  N  V  P  A  S  D  P  P  S  Y  K  G  V  A  L  G  G  F  G  T  G  A  L  Q  S  L  M  L  T  P  V  E  L  V  K  I  R  L  Q  L  Q  Q  R  N  I  L  D  N  K  N  Q  M  T  S  C  K  G  P  T  D  V  A  R  N  I  F  R  Q  E  G  W  R  G  I  Y  R  G  L  T  I  T  V  L  R  D  A  P  A  H  G  L  Y  F  W  T  Y  E  Y  V  R  E  Q  L  H  P  G  C  R  K  N  G  Q  E  S  F  R  T  M  L  I  A  G  G  L  A  G  V  A  S  W  I  C  C  Y  P  L  D  V  I  K  T  R  F  Q  A  Q  S  Q  S  T  P  L  R  Y  T  G  I  V  D  C  F  R  R  S  V  K  Q  E  G  Y  N  V  L  W  R  G  L  G  T  A  V  A  R  A  F  V  V  N  G  A  I  F  T  A  Y  E  T  A  L  R  C  L  F  I  N  N  N  K  E  V  H  A  N  I  Q  T  E  N  A  F  *  Y  R  S  K  *  S  L  S  C  V  V  S  F  Y  I  I  H  Y  T  N  C  M  V  Y  T  S  S  *  N  V  I  S  V  F  S  Y  Q  L  H  F  L  W  T  W  F  N  I  Q  D  *  N  S  V  M  *  L  S  F  M  *  Y  T  P  </first_frame>
            <second_frame>  V  L  L  S  T  S  S  A  V  L  P  P  L  K  D  L  W  L  Y  T  E  A  W  L  L  L  S  L  P  S  H  F  R :   T  P  W  Y  F  R  F  M  Q  C  Y  L  E  H  W  T  G  M  F  Q  P  V  I  H  P  P  T  K  E  W  P  *  V  D  L  E  Q  E  H  Y  K  A  *  C  S  L  L  S  N  L  *  K  F  D  F  S  C  N  R  E  T  S  W  I  T  K  I  K  *  L  V  V  R  V  Q  L  M  W  Q  E  T  Y  S  D  K  K  D  G  G  E  F  I  A  D  *  Q  L  Q  S  S  E  M  H  Q  L  T  A  Y  I  S  G  H  T  S  M  *  E  S  N  F  I  Q  D  V  V  R  M  V  K  R  A  L  E  Q  C  L  *  Q  V  V  L  Q  E  *  L  A  G  Y  A  A  I  P  *  M  L  L  K  P  D  S  R  L  S  H  N  L  H  H  *  D  I  L  A  L  L  I  V  S  G  E  V  *  N  K  R  D  I  M  C  S  G  E  V  W  E  L  Q  L  P  E  H  L  *  *  M  G  L  Y  S  L  P  M  K  L  P  *  G  A  F  S  S  T  T  T  K  K  F  T  R  I  F  K  L  K  M  H  S  N  I  G  V  S  S  H  *  A  V  L  S  H  F  I  L  F  I  I  P  I  V  W  F  I  P  Q  A  E  M  *  Y  Q  S  F  R  I  N  C  T  S  C  G  H  G  L  T  S  K  I  K  I  V  *  C  N  F  H  L  C  S  I  L  Q </second_frame>
            <third_frame>   F  C  F  Q  H  P  P  P  C  C  R  H  *  R  T  S  G  S  I  Q  R  H  G  C  S  S  R  F  R  H  I  S   : E  R  H  G  I  S  D  L  C  S  A  I  S  S  I  G  Q  E  C  S  S  Q  *  S  T  L  L  Q  R  S  G  L  R  W  I  W  N  R  S  I  T  K  P  N  A  H  S  C  R  T  C  E  N  S  T  S  V  A  T  E  K  H  P  G  *  Q  K  S  N  D  *  L  *  G  S  N  *  C  G  K  K  H  I  Q  T  R  R  M  E  G  N  L  S  R  I  N  N  Y  S  P  Q  R  C  T  S  S  R  P  I  F  L  D  I  R  V  C  K  R  A  T  S  S  R  M  S  *  E  W  S  R  E  L  *  N  N  A  Y  S  R  W  S  C  R  S  S  *  L  D  M  L  L  S  L  R  C  Y  *  N  P  I  P  G  S  V  T  I  Y  T  I  E  I  Y  W  H  C  *  L  F  Q  E  K  C  E  T  R  G  I  *  C  A  L  E  R  F  G  N  C  S  C  Q  S  I  C  S  E  W  G  Y  I  H  C  L  *  N  C  L  K  V  P  F  H  Q  Q  Q  Q  R  S  S  R  E  Y  S  N  *  K  C  I  L  I  *  E  *  V  V  I  E  L  C  C  L  I  L  Y  Y  S  L  Y  Q  L  Y  G  L  Y  L  K  L  K  C  N  I  S  L  F  V  S  T  A  L  P  V  D  M  V  *  H  P  R  L  K  *  C  N  V  T  F  I  Y  V  V  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32845" stop="32943"/>
                    <exon start="35061" stop="35774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSAFNILRRVAATEGPLALYRGMAAPLASVTFQNAMVFQIYAVLSRALDRNVPASDPPSYKGVALGGFGTGALQSLMLTPVELVKIRLQLQQRNILDNKNQMTSCKGPTDVARNIFRQEGWRGIYRGLTITVLRDAPAHGLYFWTYEYVREQLHPGCRKNGQESFRTMLIAGGLAGVASWICCYPLDVIKTRFQAQSQSTPLRYTGIVDCFRRSVKQEGYNVLWRGLGTAVARAFVVNGAIFTAYETALRCLFINNNKEVHANIQTENAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="36842" PGL_stop="36236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36842" e_stop="36236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36842" e_stop="36236" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36842" stop="36236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</gDNA_template>
            <first_frame> K  N  Q  *  T  T  R  G  K  Y  R  K  K  K  W  K  M  H  C  F  E  T  Q  V  K  V  R  Y  *  Y  R  R  *  R  N  *  R  *  W  M  R  K  I  W  I  K  *  W  T  *  K  K  F  S  T  T  T  L  T  *  N  V  Q  F  T  L  T  L  L  T  G  I  S  W  T  C  I  M  S  Y  H  F  H  R  H  S  S  M  S  T  V  K  C  *  V  L  V  T  L  S  S  R  N  Y  R  E  N  V  F  A  Y  *  *  K  F  S  S  L  A  N  F  F  C  L  L  I  A  M  P  C  T  S  I  L  K  N  F  R  K  P  H  *  I  *  V  N  F  S  D  D  H  S  T  S  S  Y  Y  L  R  K  L  E  S  R  S  K  V  T  F  R  V  D  I  Y  *  L  N  D  H  M  R  N  Q  P  Y  S  I  C  I  S  *  A  C  F  F  T  M  S  N  K  L  F  </first_frame>
            <second_frame>  R  I  S  K  Q  H  E  E  S  T  E  R  K  N  G  R  C  I  A  S  K  H  K  *  R  *  G  I  S  T  E  D  E  G  T  R  D  D  G  *  G  R  F  G  S  N  D  G  H  K  R  S  S  L  L  L  L  L  P  K  M  S  S  L  P  *  H  C  *  Q  V  F  H  G  H  V  *  *  V  I  T  S  T  D  I  H  Q  C  Q  Q  L  N  V  K  S  W  S  H  *  A  L  E  T  T  E  K  M  F  L  L  T  N  E  S  F  R  A  *  L  T  S  F  V  C  *  L  P  C  H  V  L  L  Y  *  K  I  S  E  N  L  I  R  S  E  L  I  S  Q  T  I  I  Q  L  V  V  I  T  S  E  N  W  N  Q  E  V  K  *  L  S  E  L  T  F  I  N  *  M  T  I  *  G  I  N  P  I  R  F  V  F  L  E  H  V  S  L  Q  C  Q  I  S  Y  L </second_frame>
            <third_frame>   E  S  V  N  N  T  R  K  V  Q  K  E  K  M  E  D  A  L  L  R  N  T  S  K  G  E  V  L  V  Q  K  M  K  E  L  E  M  M  D  E  E  D  L  D  Q  M  M  D  I  K  E  V  L  Y  Y  Y  S  Y  L  K  C  P  V  Y  L  D  I  V  D  R  Y  F  M  D  M  Y  N  E  L  S  L  P  Q  T  F  I  N  V  N  S  *  M  L  S  L  G  H  I  K  L  *  K  L  Q  R  K  C  F  C  L  L  M  K  V  F  E  L  S  *  L  L  L  S  V  N  C  H  A  M  Y  F  Y  I  E  K  F  Q  K  T  S  L  D  L  S  *  F  L  R  R  S  F  N  *  *  L  L  P  Q  K  I  G  I  K  K  *  S  D  F  Q  S  *  H  L  L  I  E  *  P  Y  E  E  S  T  L  F  D  L  Y  F  L  S  M  F  L  Y  N  V  K  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36840" stop="36568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESVNNTRKVQKEKMEDALLRNTSKGEVLVQKMKELEMMDEEDLDQMMDIKEVLYYYSYLKCPVYLDIVDRYFMDMYNELSLPQTFINVNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="44139" PGL_stop="48417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46239" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44192" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286831" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44759" stop="44823"/>
              <exon start="45963" stop="46206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  I  Y  L  S  S  F  Y  L  </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  *  S  T  C  L  V  F  I  L </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S  D  L  P  V  *  F  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46204"/>
            <exon e_start="46655" e_stop="46667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46204" e_length="242"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46205" i_stop="46654" i_length="450"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="46655" e_stop="46667" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46204"/>
              <exon start="46655" stop="46664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44519" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46204"/>
              <exon start="46655" stop="46665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44565" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46204"/>
              <exon start="46655" stop="46667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44788" stop="44823"/>
              <exon start="45963" stop="46204"/>
              <exon start="46655" stop="46667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTT : GAAAATGAAGTTA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L :   K  M  K  L </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T   : *  K  *  S   </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  :  E  N  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46214"/>
            <exon e_start="48209" e_stop="48226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46214" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46215" i_stop="48208" i_length="1994"/>
          </intron>
          <exon e_serial="5" e_score="0.833">
            <gDNA_exon_boundary e_start="48209" e_stop="48226" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46214"/>
              <exon start="48209" stop="48226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44759" stop="44823"/>
              <exon start="45963" stop="46206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTG : AAAAATCACAAAAAAAAA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  :  K  N  H  K  K  K </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  * :   K  I  T  K  K   </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S   : E  K  S  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46214"/>
            <exon e_start="46606" e_stop="46618"/>
            <exon e_start="46697" e_stop="46724"/>
            <exon e_start="46889" e_stop="46943"/>
            <exon e_start="47101" e_stop="47120"/>
            <exon e_start="47392" e_stop="47404"/>
            <exon e_start="47476" e_stop="47486"/>
            <exon e_start="47833" e_stop="47880"/>
            <exon e_start="48194" e_stop="48224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.688" e_score="0.692"/>
          <exon-intron don_prob="0.561" acc_prob="0.798" e_score="0.393"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.545"/>
          <exon-intron don_prob="0.535" acc_prob="0.000" e_score="0.550"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.769"/>
          <exon-intron don_prob="0.900" acc_prob="0.594" e_score="0.636"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.438"/>
          <exon-only e_score="0.742"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46214" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46215" i_stop="46605" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="0.692">
            <gDNA_exon_boundary e_start="46606" e_stop="46618" e_length="13"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.688">
            <gDNA_intron_boundary i_start="46619" i_stop="46696" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.393">
            <gDNA_exon_boundary e_start="46697" e_stop="46724" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.561" acc_prob="0.798">
            <gDNA_intron_boundary i_start="46725" i_stop="46888" i_length="164"/>
          </intron>
          <exon e_serial="7" e_score="0.545">
            <gDNA_exon_boundary e_start="46889" e_stop="46943" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="46944" i_stop="47100" i_length="157"/>
          </intron>
          <exon e_serial="8" e_score="0.550">
            <gDNA_exon_boundary e_start="47101" e_stop="47120" e_length="20"/>
          </exon>
          <intron i_serial="8" don_prob="0.535" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47121" i_stop="47391" i_length="271"/>
          </intron>
          <exon e_serial="9" e_score="0.769">
            <gDNA_exon_boundary e_start="47392" e_stop="47404" e_length="13"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47405" i_stop="47475" i_length="71"/>
          </intron>
          <exon e_serial="10" e_score="0.636">
            <gDNA_exon_boundary e_start="47476" e_stop="47486" e_length="11"/>
          </exon>
          <intron i_serial="10" don_prob="0.900" acc_prob="0.594">
            <gDNA_intron_boundary i_start="47487" i_stop="47832" i_length="346"/>
          </intron>
          <exon e_serial="11" e_score="0.438">
            <gDNA_exon_boundary e_start="47833" e_stop="47880" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47881" i_stop="48193" i_length="313"/>
          </intron>
          <exon e_serial="12" e_score="0.742">
            <gDNA_exon_boundary e_start="48194" e_stop="48224" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46214"/>
              <exon start="46606" stop="46618"/>
              <exon start="46697" stop="46724"/>
              <exon start="46889" stop="46943"/>
              <exon start="47101" stop="47120"/>
              <exon start="47392" stop="47404"/>
              <exon start="47476" stop="47486"/>
              <exon start="47833" stop="47880"/>
              <exon start="48194" stop="48224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44759" stop="44823"/>
              <exon start="45963" stop="46206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTG : TCTCTCTGATCTT : GTTAACTGAACTAACTTTAGGCTACAAG : ATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATA : GCCGCCTTGAGCGATGCAAC : ATACTATTACTGG : TTATACTGATC : TCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACAT : TTCTTCCCTTTTTAGAAAAATCACAAAAAAA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  :  S  L  *  S   : C  *  L  N  *  L  *  A  T  R :   W  C  *  G  H  R  I  G  L  K  V  R  R  L  K  F  Q  I  :  A  A  L  S  D  A  T :   Y  Y  Y  W  :  L  Y  *  S :   Q  S  K  R  P  V  L  F  L  S  F  F  K  T  N  I :   S  S  L  F  R  K  I  T  K  K </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  C :   L  S  D  L  :  V  N  *  T  N  F  R  L  Q   : D  G  V  E  G  I  E  L  G  *  R  *  G  V  *  N  F  K  * :   P  P  *  A  M  Q   : H  T  I  T  G :   Y  T  D   : L  K  A  R  G  Q  S  C  F  Y  H  S  S  K  Q  T   : F  L  P  F  L  E  K  S  Q  K   </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S   : V  S  L  I  L :   L  T  E  L  T  L  G  Y  K  :  M  V  L  R  A  S  N  W  V  E  G  K  A  S  K  I  S  N   : S  R  L  E  R  C  N  :  I  L  L  L   : V  I  L  I  :  S  K  Q  E  A  S  P  V  S  I  I  L  Q  N  K  H  :  F  F  P  F  *  K  N  H  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46202" stop="46214"/>
                    <exon start="46606" stop="46618"/>
                    <exon start="46697" stop="46724"/>
                    <exon start="46889" stop="46943"/>
                    <exon start="47101" stop="47120"/>
                    <exon start="47392" stop="47404"/>
                    <exon start="47476" stop="47486"/>
                    <exon start="47833" stop="47880"/>
                    <exon start="48194" stop="48208"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGSVSLILLTELTLGYKMVLRASNWVEGKASKISNSRLERCNILLLVILISKQEASPVSIILQNKHFFPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46201"/>
            <exon e_start="46655" e_stop="46663"/>
            <exon e_start="47563" e_stop="47592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46201" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46202" i_stop="46654" i_length="453"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="46655" e_stop="46663" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46664" i_stop="47562" i_length="899"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="47563" e_stop="47592" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44767" stop="44823"/>
              <exon start="45963" stop="46201"/>
              <exon start="46655" stop="46663"/>
              <exon start="47563" stop="47592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : GAAAATGAA : CAAACATAAATAAATAAATACCAAAAAACA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   K  M  N :   K  H  K  *  I  N  T  K  K   </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : R  K  *   : T  N  I  N  K  *  I  P  K  N  </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  E  N  E  :  Q  T  *  I  N  K  Y  Q  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46201"/>
            <exon e_start="46558" e_stop="46569"/>
            <exon e_start="46655" e_stop="46696"/>
            <exon e_start="46856" e_stop="46902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.543" acc_prob="0.745" e_score="0.667"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.595"/>
          <exon-only e_score="0.574"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46201" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46202" i_stop="46557" i_length="356"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="46558" e_stop="46569" e_length="12"/>
          </exon>
          <intron i_serial="5" don_prob="0.543" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46570" i_stop="46654" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.595">
            <gDNA_exon_boundary e_start="46655" e_stop="46696" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46697" i_stop="46855" i_length="159"/>
          </intron>
          <exon e_serial="7" e_score="0.574">
            <gDNA_exon_boundary e_start="46856" e_stop="46902" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44211" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
              <exon start="46558" stop="46569"/>
              <exon start="46655" stop="46696"/>
              <exon start="46856" stop="46902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : ATTAAATACAAA : GAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAG : ATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGC</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   L  N  T  K :   K  M  K  L  *  R  C  V  F  F  W  S  C  R :   C  *  K  Y  T  M  L  L  V  A  R  W  C  *  G  </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : N  *  I  Q   : R  K  *  S  Y  S  D  V  F  F  F  G  V  V   : D  V  R  N  T  Q  C  C  *  L  L  D  G  V  E  G </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  I  K  Y  K  :  E  N  E  V  I  A  M  C  F  F  L  E  L  *  :  M  L  E  I  H  N  V  A  S  C  *  M  V  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46201"/>
            <exon e_start="46507" e_stop="46525"/>
            <exon e_start="46655" e_stop="46724"/>
            <exon e_start="46889" e_stop="46912"/>
            <exon e_start="47101" e_stop="47123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="0.684"/>
          <exon-intron don_prob="0.561" acc_prob="0.798" e_score="0.500"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.542"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46201" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46202" i_stop="46506" i_length="305"/>
          </intron>
          <exon e_serial="5" e_score="0.684">
            <gDNA_exon_boundary e_start="46507" e_stop="46525" e_length="19"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46526" i_stop="46654" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="46655" e_stop="46724" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.561" acc_prob="0.798">
            <gDNA_intron_boundary i_start="46725" i_stop="46888" i_length="164"/>
          </intron>
          <exon e_serial="7" e_score="0.542">
            <gDNA_exon_boundary e_start="46889" e_stop="46912" e_length="24"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="46913" i_stop="47100" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="0.652">
            <gDNA_exon_boundary e_start="47101" e_stop="47123" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44211" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
              <exon start="46507" stop="46525"/>
              <exon start="46655" stop="46724"/>
              <exon start="46889" stop="46912"/>
              <exon start="47101" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : TGAAACAATGCAAAGAAAA : GAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAG : ATGGTGTTGAGGGCATCGAATTGG : GCCGCCTTGAGCGATGCAACGTA</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N :   E  T  M  Q  R  K  :  E  N  E  V  I  A  M  C  F  F  L  E  L  *  V  N  *  T  N  F  R  L  Q   : D  G  V  E  G  I  E  L   : G  R  L  E  R  C  N  V </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : M  K  Q  C  K  E  K :   K  M  K  L  *  R  C  V  F  F  W  S  C  R  L  T  E  L  T  L  G  Y  K  :  M  V  L  R  A  S  N  W  :  A  A  L  S  D  A  T   </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  *  N  N  A  K  K   : R  K  *  S  Y  S  D  V  F  F  F  G  V  V  G  *  L  N  *  L  *  A  T  R :   W  C  *  G  H  R  I  G :   P  P  *  A  M  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="44159" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46202"/>
            <exon e_start="46655" e_stop="46676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44159" e_stop="44223" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46202" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46203" i_stop="46654" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="46655" e_stop="46676" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46202"/>
              <exon start="46655" stop="46676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC : GAAAATGAAGTTATAGCGATGT</gDNA_template>
            <first_frame> P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  :  E  N  E  V  I  A  M  </first_frame>
            <second_frame>  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T :   K  M  K  L  *  R  C </second_frame>
            <third_frame>   A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *   : R  K  *  S  Y  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="44161" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46200"/>
            <exon e_start="46655" e_stop="46673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44161" e_stop="44223" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46200" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="46201" i_stop="46654" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="0.526">
            <gDNA_exon_boundary e_start="46655" e_stop="46673" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44755" stop="44823"/>
              <exon start="45963" stop="46200"/>
              <exon start="46655" stop="46673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : GAAAATGAAGTTATAGCGA</gDNA_template>
            <first_frame> A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  M  K  L  *  R </first_frame>
            <second_frame>  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : R  K  *  S  Y  S   </second_frame>
            <third_frame>   S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  E  N  E  V  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="44161" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46200"/>
            <exon e_start="47419" e_stop="47463"/>
            <exon e_start="47563" e_stop="47592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.508" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44161" e_stop="44223" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46200" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46201" i_stop="47418" i_length="1218"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="47419" e_stop="47463" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.508" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47464" i_stop="47562" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="47563" e_stop="47592" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46200"/>
              <exon start="47419" stop="47463"/>
              <exon start="47563" stop="47592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="10" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : AAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTT : CAAACATAAATAAATAAATACCAAAAAACA</gDNA_template>
            <first_frame> A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  *  R  N  N  L  *  G  N  *  E  K  *  I  F :   K  H  K  *  I  N  T  K  K   </first_frame>
            <second_frame>  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : K  N  K  E  I  T  S  K  E  I  K  K  N  K  F   : S  N  I  N  K  *  I  P  K  N  </second_frame>
            <third_frame>   S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  K  I  K  K  *  P  L  R  K  L  R  K  I  N  F  :  Q  T  *  I  N  K  Y  Q  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="44160" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46197"/>
            <exon e_start="47867" e_stop="47880"/>
            <exon e_start="48209" e_stop="48261"/>
            <exon e_start="48390" e_stop="48417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.643"/>
          <exon-intron don_prob="0.000" acc_prob="0.209" e_score="0.604"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44160" e_stop="44223" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46197" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46198" i_stop="47866" i_length="1669"/>
          </intron>
          <exon e_serial="5" e_score="0.643">
            <gDNA_exon_boundary e_start="47867" e_stop="47880" e_length="14"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47881" i_stop="48208" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="0.604">
            <gDNA_exon_boundary e_start="48209" e_stop="48261" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.209">
            <gDNA_intron_boundary i_start="48262" i_stop="48389" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="0.607">
            <gDNA_exon_boundary e_start="48390" e_stop="48417" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44160" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
              <exon start="47867" stop="47880"/>
              <exon start="48209" stop="48261"/>
              <exon start="48390" stop="48417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="11" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC : TTCAAAACAAACAT : AAAAATCACAAAAAAAAATACATTTTGTGTGTGTGGGGATGGTTCTTGATTTT : ATTTTCACTAAGGGTATTCAAAATACAA</gDNA_template>
            <first_frame> R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  :  F  K  T  N  I :   K  I  T  K  K  N  T  F  C  V  C  G  D  G  S  *  F   : Y  F  H  *  G  Y  S  K  Y   </first_frame>
            <second_frame>  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P :   S  K  Q  T   : *  K  S  Q  K  K  I  H  F  V  C  V  G  M  V  L  D  F  :  I  F  T  K  G  I  Q  N  T  </second_frame>
            <third_frame>   Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F   : L  Q  N  K  H  :  K  N  H  K  K  K  Y  I  L  C  V  W  G  W  F  L  I  L :   F  S  L  R  V  F  K  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="44139" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46200"/>
            <exon e_start="47442" e_stop="47463"/>
            <exon e_start="47563" e_stop="47659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.508" acc_prob="0.000" e_score="0.591"/>
          <exon-only e_score="0.495"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="44139" e_stop="44223" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46200" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46201" i_stop="47441" i_length="1241"/>
          </intron>
          <exon e_serial="5" e_score="0.591">
            <gDNA_exon_boundary e_start="47442" e_stop="47463" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.508" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47464" i_stop="47562" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.495">
            <gDNA_exon_boundary e_start="47563" e_stop="47659" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44139" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46200"/>
              <exon start="47442" stop="47463"/>
              <exon start="47563" stop="47659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44189" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44200" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="12" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : GAAATTAAGAAAAATAAATTTT : CAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAA</gDNA_template>
            <first_frame> Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  E  I  K  K  N  K  F   : S  N  I  N  K  *  I  P  K  N  I  Y  F  S  K  K  H  F  Y  *  S  L  L  L  A  T  K  E  H  F  R  R   </first_frame>
            <second_frame>  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  L  R  K  I  N  F  :  Q  T  *  I  N  K  Y  Q  K  T  F  I  F  R  K  N  I  F  T  K  V  F  S  *  R  L  R  N  I  L  G  G  </second_frame>
            <third_frame>   *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : R  N  *  E  K  *  I  F :   K  H  K  *  I  N  T  K  K  H  L  F  F  E  K  T  F  L  L  K  S  S  P  S  D  *  G  T  F  *  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="44471" e_stop="44607"/>
            <exon e_start="44722" e_stop="44823"/>
            <exon e_start="45963" e_stop="46201"/>
            <exon e_start="48209" e_stop="48228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44471" e_stop="44607" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44722" e_stop="44823" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44824" i_stop="45962" i_length="1139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45963" e_stop="46201" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46202" i_stop="48208" i_length="2007"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="48209" e_stop="48228" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44471" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
              <exon start="48209" stop="48228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44471" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46201"/>
              <exon start="48209" stop="48228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44513" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44607"/>
              <exon start="44722" stop="44823"/>
              <exon start="45963" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44823"/>
              <exon start="45963" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="13" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : AAAAATCACAAAAAAAAATA</gDNA_template>
            <first_frame> G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : K  K  S  Q  K  K  I </first_frame>
            <second_frame>  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  K  N  H  K  K  K   </second_frame>
            <third_frame>   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   K  I  T  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44823"/>
                    <exon start="45963" stop="46006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="14">
          <exon_coordinates>
            <exon e_start="44164" e_stop="44223"/>
            <exon e_start="44472" e_stop="44607"/>
            <exon e_start="44722" e_stop="45182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.950"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="44164" e_stop="44223" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44224" i_stop="44471" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44472" e_stop="44607" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44608" i_stop="44721" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="44722" e_stop="45182" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="44814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44211" stop="44223"/>
              <exon start="44472" stop="44607"/>
              <exon start="44722" stop="45084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44486" stop="44607"/>
              <exon start="44722" stop="45182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44486" stop="44607"/>
              <exon start="44722" stop="45182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="14" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</gDNA_template>
            <first_frame> V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E  G  T  H  I  I  V  F  L  H  F  K  I  C  *  F  T  F  Y  L  G  L  S  V  P  L  V  W  I  T  L  F  I  E  F  M  K  S  F  S  S  D  C  L  L  L  K  W  E  T  L  F  P  L  V  I  D  K  S  H  F  T  L  Q  I  S  H  I  L  A  *  T  N  I  *  I  L  F  S  T  F  I  A  N  M  T  T  T  S  F  S  S  V  K  L  F  N  W  A  Q  C  L  R  S  L  K  N  N  V  F  L  K  I  E  S  C  R  F  L  S  F </first_frame>
            <second_frame>  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  V  H  I  L  *  C  F  C  I  L  R  F  A  N  L  L  F  I  *  D  *  V  C  L  W  Y  G  *  H  C  L  *  N  L  *  N  H  F  R  V  I  A  Y  F  *  N  G  K  P  Y  F  L  *  L  *  T  K  V  I  L  L  Y  R  Y  P  I  Y  L  P  R  Q  I  F  R  Y  C  F  Q  P  S  L  L  I  *  L  L  P  L  S  H  L  L  S  C  S  T  G  H  N  V  *  E  V  *  K  I  M  C  F  *  R  *  K  V  V  D  S  F  P   </second_frame>
            <third_frame>   S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R  Y  T  Y  Y  S  V  S  A  F  *  D  L  L  I  Y  F  L  F  R  I  E  C  A  F  G  M  D  N  I  V  Y  R  I  Y  E  I  I  F  E  *  L  L  T  S  K  M  G  N  L  I  S  S  S  Y  R  Q  K  S  F  Y  F  T  D  I  P  Y  T  C  L  D  K  Y  L  D  I  V  F  N  L  H  C  *  Y  D  Y  Y  L  F  L  I  C  *  V  V  Q  L  G  T  M  F  K  K  F  K  K  *  C  V  F  K  D  R  K  L  S  I  P  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="14" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44200" stop="44223"/>
                    <exon start="44472" stop="44607"/>
                    <exon start="44722" stop="44864"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTHIIVFLHFKIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47462" PGL_stop="45961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47462" e_stop="47447"/>
            <exon e_start="46201" e_stop="45961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="47462" e_stop="47447" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47446" i_stop="46202" i_length="1245"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="46201" e_stop="45961" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47462" stop="47447"/>
              <exon start="46201" stop="45961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229712" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTATTTTTCTTA : TTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTACTTGCTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTCAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTCTTCCTTGGAGCTGCTTCAGTACCT</gDNA_template>
            <first_frame> K  F  I  F  L   : I  M  E  V  S  R  S  V  L  Y  K  N  A  K  L  E  H  I  L  L  K  F  *  A  H  *  S  F  K  G  Q  *  K  L  R  *  K  V  P  K  F  Y  L  L  *  H  L  K  Y  Q  N  E  A  T  T  N  S  L  S  S  N  C  L  E  G  L  K  Q  K  L  L  P  S  S  L  E  L  L  Q  Y   </first_frame>
            <second_frame>  N  L  F  F  L  :  L  W  K  S  Q  D  P  F  F  I  K  M  P  S  W  N  T  Y  F  *  N  F  K  H  I  N  L  S  K  G  N  K  N  *  D  R  R  S  Q  N  F  T  C  S  N  T  *  N  I  K  M  K  L  P  L  I  A  S  Q  V  T  V  S  K  A  S  S  R  S  Y  S  L  L  P  W  S  C  F  S  T  </second_frame>
            <third_frame>   I  Y  F  S  Y :   Y  G  S  L  K  I  R  S  L  *  K  C  Q  V  G  T  H  T  F  K  I  L  S  T  L  I  F  Q  R  A  I  K  T  K  I  E  G  P  K  I  L  L  A  L  T  L  E  I  S  K  *  S  Y  H  *  *  P  L  K  *  L  S  R  R  P  Q  A  E  A  T  P  F  F  L  G  A  A  S  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52593" PGL_stop="51270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52593" e_stop="52388"/>
            <exon e_start="51902" e_stop="51776"/>
            <exon e_start="51595" e_stop="51270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52593" e_stop="52388" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52387" i_stop="51903" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51902" e_stop="51776" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.956">
            <gDNA_intron_boundary i_start="51775" i_stop="51596" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51595" e_stop="51270" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52593" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52549" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52548" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52548" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52548" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52548" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52548" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52546" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52545" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52544" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52540" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52537" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52537" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52536" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52536" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52535" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52515" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52507" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52507" stop="52388"/>
              <exon start="51902" stop="51776"/>
              <exon start="51595" stop="51277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG : GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG : AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</gDNA_template>
            <first_frame> K  T  I  T  Y  S  Q  S  H  H  F  L  S  H  R  *  F  P  S  L  K  Q  S  P  I  M  A  S  M  A  T  L  T  A  V  K  P  T  S  S  V  K  G  L  A  G  S  S  I  A  G  T  K  L  N  V  K  S  S  R  L  N  V  K  Q  S  K  S  R :   A  G  A  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  L  L  P  N  Q  N  F  F  T  F  I  L  L  L  M  Y  H  L  Y  N  S  L  *  V  Y  I  K  A  Y  L  R  P  L  L  Q  Q  D  K  S  S  G  K  F  K  A  L  L  S   </first_frame>
            <second_frame>  K  P  *  H  I  H  N  H  I  I  F  *  A  T  G  N  F  L  V  *  S  R  A  Q  *  W  R  L  W  Q  L  L  L  Q  *  S  P  P  V  V  S  R  A  *  L  E  A  P  L  L  E  L  S  *  M  L  N  H  L  A  S  M  *  S  N  L  N  P   : G  L  V  L  W  L  Q  N  M  V  T  R  V  Y  I  L  T  W  R  I  W  A  T  Q  L  V  S  G  T  C  M  D  Q  M  L  L  H  L  T  T  P  F  R :   A  S  S  L  R  H  L  L  L  L  S  Q  R  E  V  C  C  S  S  S  *  Y  W  E  V  A  Q  L  L  L  T  S  V  Q  L  H  Q  E  I  S  Y  Q  S  R  K  A  P  N  F  H  Q  S  S  V  H  V  A  R  S  N  C  F  P  I  K  I  S  L  P  S  F  C  Y  *  C  I  I  Y  I  T  A  C  K  C  T  L  K  L  T  S  D  L  C  Y  N  K  I  N  L  L  E  S  S  K  H  C  F  R  </second_frame>
            <third_frame>   N  H  N  I  F  T  I  T  S  F  S  E  P  Q  V  I  S  *  S  E  A  E  P  N  N  G  V  Y  G  N  S  Y  C  S  K  A  H  Q  *  C  Q  G  P  S  W  K  L  H  C  W  N  *  A  E  C  *  I  I  S  P  Q  C  E  A  I  *  I  Q  :  G  W  C  C  G  C  K  I  W  *  Q  E  C  I  F  *  L  G  G  F  G  Q  H  N  W  S  V  G  L  V  W  I  R  C  S  F  T  L  Q  L  P  S   : E  Q  V  L  *  D  I  C  C  S  F  H  K  E  R  S  V  A  Q  V  L  D  I  G  R  W  L  N  S  C  L  L  Q  F  N  C  I  R  R  Y  P  T  N  Q  E  R  P  P  T  S  T  K  A  R  S  T  W  Q  D  L  I  A  S  Q  S  K  F  L  Y  L  H  F  V  I  D  V  S  S  I  *  Q  L  V  S  V  H  *  S  L  P  Q  T  S  V  T  T  R  *  I  F  W  K  V  Q  S  I  A  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52545" stop="52388"/>
                    <exon start="51902" stop="51776"/>
                    <exon start="51595" stop="51416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPSLKQSPIMASMATLTAVKPTSSVKGLAGSSIAGTKLNVKSSRLNVKQSKSRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="61452" PGL_stop="65722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63928" e_stop="64191" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61528" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  H  P  S  L  N  F   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T  I  P  L  S  I  S  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  S  L  S  Q  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63997" stop="64191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPSLSQFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64090"/>
            <exon e_start="65688" e_stop="65703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="63928" e_stop="64090" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64091" i_stop="65687" i_length="1597"/>
          </intron>
          <exon e_serial="7" e_score="0.938">
            <gDNA_exon_boundary e_start="65688" e_stop="65703" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61666" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
              <exon start="65688" stop="65703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC : AAAAAAAAAAAAATAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  :  K  K  K  K  I  </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T :   K  K  K  K  * </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q   : Q  K  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64090"/>
            <exon e_start="64938" e_stop="64991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.574"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63928" e_stop="64090" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64091" i_stop="64937" i_length="847"/>
          </intron>
          <exon e_serial="7" e_score="0.574">
            <gDNA_exon_boundary e_start="64938" e_stop="64991" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61605" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
              <exon start="64938" stop="64991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC : AAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATT</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  :  K  K  S  K  R  I  I  I  Q  I  N  S  I  K  K  I  D  I </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T :   K  N  Q  N  E  *  *  F  K  S  T  R  L  K  K  L  I   </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q   : Q  K  I  K  T  N  N  N  S  N  Q  L  D  *  K  N  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64138"/>
            <exon e_start="65667" e_stop="65722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="63928" e_stop="64138" e_length="211"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64139" i_stop="65666" i_length="1528"/>
          </intron>
          <exon e_serial="7" e_score="0.607">
            <gDNA_exon_boundary e_start="65667" e_stop="65722" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61598" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64138"/>
              <exon start="65667" stop="65722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATAT : TAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  :  *  *  *  L  I  N  H  K  K  K  K  I  T  M  Y  E  Y  K   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  I :   N  N  S  *  L  I  I  K  K  K  K  *  P  C  T  N  T  K  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I   : L  I  I  V  D  *  S  *  K  K  K  N  N  H  V  R  I  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64105"/>
            <exon e_start="65686" e_stop="65705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="63928" e_stop="64105" e_length="178"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64106" i_stop="65685" i_length="1580"/>
          </intron>
          <exon e_serial="7" e_score="0.900">
            <gDNA_exon_boundary e_start="65686" e_stop="65705" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61591" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64105"/>
              <exon start="65686" stop="65705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCAT : ATAAAAAAAAAAAAATAACC</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  :  I  K  K  K  K  *   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I :   *  K  K  K  N  N  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S   : Y  K  K  K  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="61508" e_stop="61727"/>
            <exon e_start="62449" e_stop="62543"/>
            <exon e_start="62907" e_stop="62993"/>
            <exon e_start="63354" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64173"/>
            <exon e_start="65682" e_stop="65721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.675"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="61508" e_stop="61727" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61728" i_stop="62448" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62449" e_stop="62543" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62544" i_stop="62906" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62907" e_stop="62993" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62994" i_stop="63353" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63354" e_stop="63416" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="63928" e_stop="64173" e_length="246"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64174" i_stop="65681" i_length="1508"/>
          </intron>
          <exon e_serial="7" e_score="0.675">
            <gDNA_exon_boundary e_start="65682" e_stop="65721" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61508" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61540" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="63963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61586" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64173"/>
              <exon start="65682" stop="65721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61608" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61609" stop="61727"/>
              <exon start="62449" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62543"/>
              <exon start="62907" stop="62993"/>
              <exon start="63354" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCA : AATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  Q :   I  I  K  K  K  K  *  P  C  T  N  T  K </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T   : K  S  *  K  K  K  N  N  H  V  R  I  Q   </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  :  N  H  K  K  K  K  I  T  M  Y  E  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61727"/>
                    <exon start="62449" stop="62543"/>
                    <exon start="62907" stop="62993"/>
                    <exon start="63354" stop="63416"/>
                    <exon start="63584" stop="63621"/>
                    <exon start="63928" stop="63982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63997" stop="64173"/>
                    <exon start="65682" stop="65720"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPNHKKKKITMYEYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="61452" e_stop="62274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="61452" e_stop="62274" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61452" stop="61990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61533" stop="62063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61654" stop="62274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61654" stop="62064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</gDNA_template>
            <first_frame> A  G  L  L  I  P  T  F  G  F  C  S  Y  Y  C  C  G  V  C  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  V  S  F  L  L  Q  H  S  Q  *  Q  F  Q  S  A  I  S  L  I  E  V  *  F  *  G  I  V  L  Q  F  H  R  *  K  S  D  Q  *  *  Y  R  A  C  N  I  D  D  A  T  F  H  *  F  F  F  L  N  D  C  S  V  W  A  S  I  K  L  P  V  V  F  A  T  F  H  *  I  V  *  R  L  V  W  M  F  L  V  M  *  C  V  *  S  I  E  R  T  *  Q  E  E  L  E  I  L  N  E  H  S  S  F  T  S  K  R  N  V  S  I  P  Y  L  L  L  *  I  E  S  K  *  A  C  E  R  G  Y  P  E  F  V  I  D  F  W  L  L  W  N  G  G  G  *  T  C  K  *  N  I  H  E  G  S  F  D  M  R  L  Q  N  N  *  Y  C  *  T  R  *  N  *  L  *  K  </first_frame>
            <second_frame>  P  V  F  *  F  P  H  S  A  F  A  L  I  I  V  V  A  Y  V  A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  Q  *  V  F  F  C  N  I  H  N  N  S  F  S  L  Q  L  V  L  L  R  Y  N  F  E  V  L  C  C  N  F  I  G  E  N  P  I  S  S  N  T  G  L  V  T  S  M  M  L  L  F  T  S  F  F  F  *  M  T  V  V  S  G  P  R  L  N  Y  L  L  F  L  L  H  F  T  R  *  F  K  D  *  Y  G  C  F  S  L  C  S  V  F  S  P  *  R  G  L  N  K  K  S  W  R  Y  S  M  N  I  H  H  L  L  A  K  E  M  F  L  F  R  I  C  Y  Y  R  *  K  V  N  E  P  V  S  E  A  I  L  N  L  L  L  T  F  G  Y  Y  G  M  E  V  D  E  P  V  N  R  T  F  M  K  V  R  L  I  C  G  Y  R  T  I  N  T  A  K  P  G  K  I  D  F  E  S </second_frame>
            <third_frame>   R  S  S  D  S  H  I  R  L  L  L  L  L  L  L  W  R  M  W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T  S  K  F  S  S  A  T  F  T  I  T  V  S  V  C  N  *  S  Y  *  G  I  I  L  R  Y  C  V  A  I  S  *  V  K  I  R  S  V  V  I  P  G  L  *  H  R  *  C  Y  F  S  L  V  F  F  F  K  *  L  *  C  L  G  L  D  *  I  T  C  C  F  C  Y  I  S  L  D  S  L  K  T  S  M  D  V  S  R  Y  V  V  C  L  V  H  R  E  D  L  T  R  R  V  G  D  T  Q  *  T  F  I  I  Y  *  Q  K  K  C  F  Y  S  V  F  V  T  I  D  R  K  *  M  S  L  *  A  R  L  S  *  I  C  Y  *  L  L  A  T  M  E  W  R  W  M  N  L  *  I  E  H  S  *  R  F  V  *  Y  A  V  T  E  Q  L  I  L  L  N  Q  V  K  L  T  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61580" stop="61777"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTSKFSSATFTITVSVCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="63341" e_stop="63416"/>
            <exon e_start="63584" e_stop="63621"/>
            <exon e_start="63928" e_stop="64325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="0.934"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="63341" e_stop="63416" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="63417" i_stop="63583" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63621" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="63622" i_stop="63927" i_length="306"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="63928" e_stop="64325" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63341" stop="63416"/>
              <exon start="63584" stop="63621"/>
              <exon start="63928" stop="64325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</gDNA_template>
            <first_frame> K  F  *  I  G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  S  L  S  Q  F  P  M  V  F  Y  C  L  P  *  S  D  *  S  N  E  N  S  L  A  S  L  S  S  R  I  *  T  K  S  G  Y  P  N  L  F  M  I  *  Y  L  V  F  I  *  N   </first_frame>
            <second_frame>  S  F  E  *  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  H  P  S  L  N  F  L  W  F  S  T  V  C  H  S  Q  T  D  P  T  K  T  L  *  Q  V  *  V  H  V  Y  K  P  K  V  G  T  L  I  C  L  *  F  D  I  *  Y  L  F  K  I  </second_frame>
            <third_frame>   V  L  N  R  Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T  I  P  L  S  I  S  Y  G  F  L  L  S  A  I  V  R  L  I  Q  R  K  L  F  S  K  F  E  F  T  Y  I  N  Q  K  W  V  P  *  F  V  Y  D  L  I  F  S  I  Y  L  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63997" stop="64215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPSLSQFPMVFYCLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="65820" PGL_stop="81642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65820" e_stop="65929"/>
            <exon e_start="66111" e_stop="66306"/>
            <exon e_start="68135" e_stop="69228"/>
            <exon e_start="70129" e_stop="70200"/>
            <exon e_start="71366" e_stop="71440"/>
            <exon e_start="72550" e_stop="72664"/>
            <exon e_start="73719" e_stop="73780"/>
            <exon e_start="73866" e_stop="73913"/>
            <exon e_start="75902" e_stop="76186"/>
            <exon e_start="76264" e_stop="76323"/>
            <exon e_start="76406" e_stop="76489"/>
            <exon e_start="76593" e_stop="76658"/>
            <exon e_start="76730" e_stop="76828"/>
            <exon e_start="76905" e_stop="77123"/>
            <exon e_start="77843" e_stop="77954"/>
            <exon e_start="78269" e_stop="78480"/>
            <exon e_start="78718" e_stop="78777"/>
            <exon e_start="78900" e_stop="79013"/>
            <exon e_start="80578" e_stop="80652"/>
            <exon e_start="80737" e_stop="81038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.654" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.917"/>
          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.378" acc_prob="0.254" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.298" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="65820" e_stop="65929" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66111" e_stop="66306" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.617">
            <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="68135" e_stop="69228" e_length="1094"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69229" i_stop="70128" i_length="900"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70129" e_stop="70200" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.654" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70201" i_stop="71365" i_length="1165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71366" e_stop="71440" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72550" e_stop="72664" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.710">
            <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73719" e_stop="73780" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73866" e_stop="73913" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75902" e_stop="76186" e_length="285"/>
          </exon>
          <intron i_serial="9" don_prob="0.683" acc_prob="0.862">
            <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76264" e_stop="76323" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="0.917">
            <gDNA_exon_boundary e_start="76406" e_stop="76489" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76490" i_stop="76592" i_length="103"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="76593" e_stop="76658" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.933" acc_prob="0.947">
            <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71"/>
          </intron>
          <exon e_serial="13" e_score="0.990">
            <gDNA_exon_boundary e_start="76730" e_stop="76828" e_length="99"/>
          </exon>
          <intron i_serial="13" don_prob="0.378" acc_prob="0.254">
            <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="76905" e_stop="77123" e_length="219"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="77843" e_stop="77954" e_length="112"/>
          </exon>
          <intron i_serial="15" don_prob="0.975" acc_prob="0.298">
            <gDNA_intron_boundary i_start="77955" i_stop="78268" i_length="314"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="78269" e_stop="78480" e_length="212"/>
          </exon>
          <intron i_serial="16" don_prob="0.871" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78481" i_stop="78717" i_length="237"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="78718" e_stop="78777" e_length="60"/>
          </exon>
          <intron i_serial="17" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="78900" e_stop="79013" e_length="114"/>
          </exon>
          <intron i_serial="18" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="80578" e_stop="80652" e_length="75"/>
          </exon>
          <intron i_serial="19" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84"/>
          </intron>
          <exon e_serial="20" e_score="0.987">
            <gDNA_exon_boundary e_start="80737" e_stop="81038" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65820" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65926" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65926" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65927" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="69060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68750" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68775" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68840" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69108" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71406" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72571" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76186"/>
              <exon start="76264" stop="76323"/>
              <exon start="76406" stop="76454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72590" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="75934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76271" stop="76323"/>
              <exon start="76406" stop="76489"/>
              <exon start="76593" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76603" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76623" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78373" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78420" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265183" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80595" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66138" stop="66306"/>
                    <exon start="68135" stop="69228"/>
                    <exon start="70129" stop="70200"/>
                    <exon start="71366" stop="71440"/>
                    <exon start="72550" stop="72664"/>
                    <exon start="73719" stop="73780"/>
                    <exon start="73866" stop="73913"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77954"/>
                    <exon start="78269" stop="78480"/>
                    <exon start="78718" stop="78777"/>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="81023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
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        </AGS_line>
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          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
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          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
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          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
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        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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        </exon-intron_info>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA : AAAAGGAAAAAGCAACAA</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K :   K  G  K  S  N   </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L   : K  K  E  K  A  T  </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  :  K  R  K  K  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66138" stop="66306"/>
                    <exon start="68135" stop="69228"/>
                    <exon start="70129" stop="70200"/>
                    <exon start="71366" stop="71440"/>
                    <exon start="72550" stop="72664"/>
                    <exon start="73719" stop="73780"/>
                    <exon start="73866" stop="73913"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77954"/>
                    <exon start="78269" stop="78480"/>
                    <exon start="78718" stop="78777"/>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
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                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALKKEKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
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          <PGS_line>
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          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA : AGAAAAGGAAAAAGCAACAAGATTGGAGC</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K :   E  K  E  K  A  T  R  L  E  </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L   : K  K  R  K  K  Q  Q  D  W  S </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  :  R  K  G  K  S  N  K  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66138" stop="66306"/>
                    <exon start="68135" stop="69228"/>
                    <exon start="70129" stop="70200"/>
                    <exon start="71366" stop="71440"/>
                    <exon start="72550" stop="72664"/>
                    <exon start="73719" stop="73780"/>
                    <exon start="73866" stop="73913"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77954"/>
                    <exon start="78269" stop="78480"/>
                    <exon start="78718" stop="78777"/>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="81000"/>
                    <exon start="81614" stop="81642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALKKRKKQQDWS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68098" e_stop="69228"/>
            <exon e_start="70129" e_stop="70200"/>
            <exon e_start="71366" e_stop="71440"/>
            <exon e_start="72550" e_stop="72664"/>
            <exon e_start="73719" e_stop="73780"/>
            <exon e_start="73866" e_stop="73913"/>
            <exon e_start="75902" e_stop="76186"/>
            <exon e_start="76264" e_stop="76323"/>
            <exon e_start="76406" e_stop="76489"/>
            <exon e_start="76593" e_stop="76658"/>
            <exon e_start="76730" e_stop="76828"/>
            <exon e_start="76905" e_stop="77123"/>
            <exon e_start="77843" e_stop="77954"/>
            <exon e_start="78269" e_stop="78480"/>
            <exon e_start="78718" e_stop="78777"/>
            <exon e_start="78900" e_stop="79013"/>
            <exon e_start="80578" e_stop="80652"/>
            <exon e_start="80737" e_stop="81038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.917"/>
          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.378" acc_prob="0.254" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.298" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68098" e_stop="69228" e_length="1131"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69229" i_stop="70128" i_length="900"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70129" e_stop="70200" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.654" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70201" i_stop="71365" i_length="1165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71366" e_stop="71440" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72550" e_stop="72664" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.710">
            <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73719" e_stop="73780" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73866" e_stop="73913" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75902" e_stop="76186" e_length="285"/>
          </exon>
          <intron i_serial="7" don_prob="0.683" acc_prob="0.862">
            <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76264" e_stop="76323" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="0.917">
            <gDNA_exon_boundary e_start="76406" e_stop="76489" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76490" i_stop="76592" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76593" e_stop="76658" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.933" acc_prob="0.947">
            <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71"/>
          </intron>
          <exon e_serial="11" e_score="0.990">
            <gDNA_exon_boundary e_start="76730" e_stop="76828" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.378" acc_prob="0.254">
            <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="76905" e_stop="77123" e_length="219"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="77843" e_stop="77954" e_length="112"/>
          </exon>
          <intron i_serial="13" don_prob="0.975" acc_prob="0.298">
            <gDNA_intron_boundary i_start="77955" i_stop="78268" i_length="314"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="78269" e_stop="78480" e_length="212"/>
          </exon>
          <intron i_serial="14" don_prob="0.871" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78481" i_stop="78717" i_length="237"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="78718" e_stop="78777" e_length="60"/>
          </exon>
          <intron i_serial="15" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="78900" e_stop="79013" e_length="114"/>
          </exon>
          <intron i_serial="16" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="80578" e_stop="80652" e_length="75"/>
          </exon>
          <intron i_serial="17" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84"/>
          </intron>
          <exon e_serial="18" e_score="0.987">
            <gDNA_exon_boundary e_start="80737" e_stop="81038" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68098" stop="68884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="69060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68750" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68775" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68840" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69108" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71406" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72571" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76186"/>
              <exon start="76264" stop="76323"/>
              <exon start="76406" stop="76454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72590" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="75934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76271" stop="76323"/>
              <exon start="76406" stop="76489"/>
              <exon start="76593" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76603" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76623" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78373" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78420" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265183" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80595" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> L  L  S  C  G  Q  C  F  D  C  M  P  A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </first_frame>
            <second_frame>  F  Y  L  V  G  N  A  S  I  A  C  Q  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </second_frame>
            <third_frame>   F  I  L  W  A  M  L  R  L  H  A  S  F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68098" stop="69228"/>
                    <exon start="70129" stop="70200"/>
                    <exon start="71366" stop="71440"/>
                    <exon start="72550" stop="72664"/>
                    <exon start="73719" stop="73780"/>
                    <exon start="73866" stop="73913"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77954"/>
                    <exon start="78269" stop="78480"/>
                    <exon start="78718" stop="78777"/>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2922</number_coding_nucleotides>
                  <number_encoded_amino_acids>974</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSCGQCFDCMPASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="81023"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="65820" e_stop="65929"/>
            <exon e_start="66111" e_stop="66306"/>
            <exon e_start="68135" e_stop="69228"/>
            <exon e_start="70129" e_stop="70200"/>
            <exon e_start="71366" e_stop="71440"/>
            <exon e_start="72550" e_stop="72664"/>
            <exon e_start="73719" e_stop="73780"/>
            <exon e_start="73866" e_stop="73913"/>
            <exon e_start="75902" e_stop="76186"/>
            <exon e_start="76264" e_stop="76323"/>
            <exon e_start="76406" e_stop="76489"/>
            <exon e_start="76593" e_stop="76658"/>
            <exon e_start="76730" e_stop="76828"/>
            <exon e_start="76905" e_stop="77123"/>
            <exon e_start="77843" e_stop="78111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.654" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.917"/>
          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="0.970"/>
          <exon-intron don_prob="0.378" acc_prob="0.254" e_score="0.960"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="0.991"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="65820" e_stop="65929" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65930" i_stop="66110" i_length="181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66111" e_stop="66306" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.617">
            <gDNA_intron_boundary i_start="66307" i_stop="68134" i_length="1828"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="68135" e_stop="69228" e_length="1094"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69229" i_stop="70128" i_length="900"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70129" e_stop="70200" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.654" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70201" i_stop="71365" i_length="1165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71366" e_stop="71440" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71441" i_stop="72549" i_length="1109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72550" e_stop="72664" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.710">
            <gDNA_intron_boundary i_start="72665" i_stop="73718" i_length="1054"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73719" e_stop="73780" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73781" i_stop="73865" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73866" e_stop="73913" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73914" i_stop="75901" i_length="1988"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75902" e_stop="76186" e_length="285"/>
          </exon>
          <intron i_serial="9" don_prob="0.683" acc_prob="0.862">
            <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76264" e_stop="76323" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="0.917">
            <gDNA_exon_boundary e_start="76406" e_stop="76489" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76490" i_stop="76592" i_length="103"/>
          </intron>
          <exon e_serial="12" e_score="0.970">
            <gDNA_exon_boundary e_start="76593" e_stop="76658" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.933" acc_prob="0.947">
            <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71"/>
          </intron>
          <exon e_serial="13" e_score="0.960">
            <gDNA_exon_boundary e_start="76730" e_stop="76828" e_length="99"/>
          </exon>
          <intron i_serial="13" don_prob="0.378" acc_prob="0.254">
            <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76"/>
          </intron>
          <exon e_serial="14" e_score="0.991">
            <gDNA_exon_boundary e_start="76905" e_stop="77123" e_length="219"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719"/>
          </intron>
          <exon e_serial="15" e_score="0.978">
            <gDNA_exon_boundary e_start="77843" e_stop="78111" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65820" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65926" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65926" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65927" stop="65929"/>
              <exon start="66111" stop="66306"/>
              <exon start="68135" stop="68377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="69060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68750" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68775" stop="69188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68840" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69108" stop="69228"/>
              <exon start="70129" stop="70200"/>
              <exon start="71366" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71406" stop="71440"/>
              <exon start="72550" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72571" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="76186"/>
              <exon start="76264" stop="76323"/>
              <exon start="76406" stop="76454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72590" stop="72664"/>
              <exon start="73719" stop="73780"/>
              <exon start="73866" stop="73913"/>
              <exon start="75902" stop="75934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76271" stop="76323"/>
              <exon start="76406" stop="76489"/>
              <exon start="76593" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76776" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="78111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76776" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="78051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTAC</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  V  V  N  T  K  F  S  F  Q  Y  D  A  S  Y  I  Y  V  I  A  T  V  L  F  S  I  M  F  N  I  L  Y  C  L  T  W  L  L  H  F  C  I  S  L  P  V  L  D  F  S  C  A  L  </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  W  *  L  I  P  N  L  V  F  N  M  M  L  H  T  F  M  L  L  L  L  F  S  S  P  S  C  L  T  F  S  I  V  *  H  G  C  F  T  S  V  F  P  F  P  Y  L  I  F  L  V  L  Y </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N  G  S  *  Y  Q  I  *  F  S  I  *  C  F  I  H  L  C  Y  C  Y  C  S  L  L  H  H  V  *  H  S  L  L  F  N  M  V  A  S  L  L  Y  F  P  S  R  T  *  F  F  L  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66138" stop="66306"/>
                    <exon start="68135" stop="69228"/>
                    <exon start="70129" stop="70200"/>
                    <exon start="71366" stop="71440"/>
                    <exon start="72550" stop="72664"/>
                    <exon start="73719" stop="73780"/>
                    <exon start="73866" stop="73913"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77962"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2565</number_coding_nucleotides>
                  <number_encoded_amino_acids>855</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="75486" e_stop="75669"/>
            <exon e_start="75902" e_stop="76186"/>
            <exon e_start="76264" e_stop="76323"/>
            <exon e_start="76406" e_stop="76489"/>
            <exon e_start="76593" e_stop="76658"/>
            <exon e_start="76730" e_stop="76828"/>
            <exon e_start="76905" e_stop="77123"/>
            <exon e_start="77843" e_stop="77954"/>
            <exon e_start="78269" e_stop="78480"/>
            <exon e_start="78718" e_stop="78777"/>
            <exon e_start="78900" e_stop="79013"/>
            <exon e_start="80578" e_stop="80652"/>
            <exon e_start="80737" e_stop="81038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.917"/>
          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.378" acc_prob="0.254" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.298" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75486" e_stop="75669" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75670" i_stop="75901" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75902" e_stop="76186" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.683" acc_prob="0.862">
            <gDNA_intron_boundary i_start="76187" i_stop="76263" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76264" e_stop="76323" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76324" i_stop="76405" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="76406" e_stop="76489" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76490" i_stop="76592" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76593" e_stop="76658" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.947">
            <gDNA_intron_boundary i_start="76659" i_stop="76729" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="76730" e_stop="76828" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.378" acc_prob="0.254">
            <gDNA_intron_boundary i_start="76829" i_stop="76904" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76905" e_stop="77123" e_length="219"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="77124" i_stop="77842" i_length="719"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77843" e_stop="77954" e_length="112"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.298">
            <gDNA_intron_boundary i_start="77955" i_stop="78268" i_length="314"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78269" e_stop="78480" e_length="212"/>
          </exon>
          <intron i_serial="9" don_prob="0.871" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78481" i_stop="78717" i_length="237"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="78718" e_stop="78777" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78778" i_stop="78899" i_length="122"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="78900" e_stop="79013" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="80578" e_stop="80652" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84"/>
          </intron>
          <exon e_serial="13" e_score="0.987">
            <gDNA_exon_boundary e_start="80737" e_stop="81038" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75486" stop="75669"/>
              <exon start="75902" stop="76186"/>
              <exon start="76264" stop="76323"/>
              <exon start="76406" stop="76456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76271" stop="76323"/>
              <exon start="76406" stop="76489"/>
              <exon start="76593" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76603" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76623" stop="76658"/>
              <exon start="76730" stop="76828"/>
              <exon start="76905" stop="77123"/>
              <exon start="77843" stop="77954"/>
              <exon start="78269" stop="78478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78373" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78420" stop="78480"/>
              <exon start="78718" stop="78777"/>
              <exon start="78900" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265183" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80595" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGAT : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> V  N  P  N  L  T  P  R  T  G  N  L  D  T  G  Q  F  N  K  G  S  N  I  R  K  Q  E  L  G  W  S  D  T  M  *  E  T  Q  P  Q  K  G  *  L  K  W  G  G  L  H  K  T  R  *  G  E  I  L  Q  E  R   : C  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </first_frame>
            <second_frame>  S  T  P  T  S  R  P  G  L  E  I  W  I  L  D  N  L  I  R  G  R  I  S  G  N  K  N  W  D  G  L  I  P  C  K  K  L  N  P  K  K  A  S  S  S  G  E  G  C  T  R  P  D  K  E  R  F  F  K  R  D  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </second_frame>
            <third_frame>   Q  P  Q  P  H  A  Q  D  W  K  S  G  Y  W  T  I  *  *  G  V  E  Y  Q  E  T  R  I  G  M  V  *  Y  H  V  R  N  S  T  P  K  R  L  A  Q  V  G  R  V  A  Q  D  Q  I  R  R  D  S  S  R  E  M :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75487" stop="75669"/>
                    <exon start="75902" stop="76186"/>
                    <exon start="76264" stop="76323"/>
                    <exon start="76406" stop="76489"/>
                    <exon start="76593" stop="76658"/>
                    <exon start="76730" stop="76828"/>
                    <exon start="76905" stop="77123"/>
                    <exon start="77843" stop="77954"/>
                    <exon start="78269" stop="78480"/>
                    <exon start="78718" stop="78777"/>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STPTSRPGLEIWILDNLIRGRISGNKNWDGLIPCKKLNPKKASSSGEGCTRPDKERFFKRDVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="81023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="80431" e_stop="80434"/>
            <exon e_start="80578" e_stop="80652"/>
            <exon e_start="80737" e_stop="81000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.722" acc_prob="0.921" e_score="0.750"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="80431" e_stop="80434" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.722" acc_prob="0.921">
            <gDNA_intron_boundary i_start="80435" i_stop="80577" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80578" e_stop="80652" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80737" e_stop="81000" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80431" stop="80434"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80595" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAT : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</gDNA_template>
            <first_frame> G   : F  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  </first_frame>
            <second_frame>  D  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  * </second_frame>
            <third_frame>   I :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="80999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="78898" e_stop="79013"/>
            <exon e_start="80578" e_stop="80652"/>
            <exon e_start="80737" e_stop="81038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78898" e_stop="79013" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="79014" i_stop="80577" i_length="1564"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80578" e_stop="80652" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="80653" i_stop="80736" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="80737" e_stop="81038" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78898" stop="79013"/>
              <exon start="80578" stop="80652"/>
              <exon start="80737" stop="81038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80595" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="80652"/>
              <exon start="80737" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> S  V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </first_frame>
            <second_frame>  V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </second_frame>
            <third_frame>   C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80751" stop="81023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78900" stop="79013"/>
                    <exon start="80578" stop="80652"/>
                    <exon start="80737" stop="80772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81805" PGL_stop="89032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81805" e_stop="81884"/>
            <exon e_start="82016" e_stop="82167"/>
            <exon e_start="82607" e_stop="82718"/>
            <exon e_start="82842" e_stop="82909"/>
            <exon e_start="83244" e_stop="83376"/>
            <exon e_start="83782" e_stop="83881"/>
            <exon e_start="83946" e_stop="84058"/>
            <exon e_start="84316" e_stop="84409"/>
            <exon e_start="85766" e_stop="85919"/>
            <exon e_start="86008" e_stop="86151"/>
            <exon e_start="86243" e_stop="86316"/>
            <exon e_start="86428" e_stop="86516"/>
            <exon e_start="86915" e_stop="87029"/>
            <exon e_start="88306" e_stop="89032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.179" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.881" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.048" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81805" e_stop="81884" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="81885" i_stop="82015" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82016" e_stop="82167" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82168" i_stop="82606" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82607" e_stop="82718" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82719" i_stop="82841" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82842" e_stop="82909" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.179">
            <gDNA_intron_boundary i_start="82910" i_stop="83243" i_length="334"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83244" e_stop="83376" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83377" i_stop="83781" i_length="405"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83782" e_stop="83881" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83882" i_stop="83945" i_length="64"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="83946" e_stop="84058" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84059" i_stop="84315" i_length="257"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84316" e_stop="84409" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.881" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84410" i_stop="85765" i_length="1356"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="85766" e_stop="85919" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.977">
            <gDNA_intron_boundary i_start="85920" i_stop="86007" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="86008" e_stop="86151" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="86152" i_stop="86242" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="86243" e_stop="86316" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.048" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86317" i_stop="86427" i_length="111"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="86428" e_stop="86516" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="0.831" acc_prob="0.942">
            <gDNA_intron_boundary i_start="86517" i_stop="86914" i_length="398"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="86915" e_stop="87029" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87030" i_stop="88305" i_length="1276"/>
          </intron>
          <exon e_serial="14" e_score="0.982">
            <gDNA_exon_boundary e_start="88306" e_stop="89032" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81805" stop="81884"/>
              <exon start="82016" stop="82167"/>
              <exon start="82607" stop="82718"/>
              <exon start="82842" stop="82909"/>
              <exon start="83244" stop="83376"/>
              <exon start="83782" stop="83881"/>
              <exon start="83946" stop="84058"/>
              <exon start="84316" stop="84409"/>
              <exon start="85766" stop="85919"/>
              <exon start="86008" stop="86151"/>
              <exon start="86243" stop="86316"/>
              <exon start="86428" stop="86516"/>
              <exon start="86915" stop="87029"/>
              <exon start="88306" stop="89032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG : GTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG : ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG : GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG : GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAG : TGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAG : GTTTCACCAGCTTTTGTTAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG : GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG : AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAG : TGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAG : GGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATG : GCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACT : GTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG : GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAATATTTGTCTTCAGT</gDNA_template>
            <first_frame> F  S  F  F  N  *  F  L  S  K  T  S  L  P  I  C  N  S  *  C  L  T  K  R  F  R  R :   L  A  Y  M  I  G  I  F  V  T  V  P  *  I  R  S  H  N  M  R  G  G  G  L  A  D  A  Y  S  M  Y  K  R  A  S  T  K  D  Q  F  T  D  Y  E  D  R  E  E  N  L   : D  R  A  E  N  G  V  W  K  E  I  G  N  P  S  W  K  R  P  L  P  H  I  L  V  A  I  I  S  S  L  L  F  G  Y  H  L  G :   V  V  N  D  T  L  E  S  M  S  L  D  L  D  F  S  G  S  T  L  A  E   : G  L  V  V  S  T  C  L  G  G  A  L  L  G  S  I  F  S  G  W  I  A  D  G  V  G  R  R  R  G  F  Q  L  C  A  L  P  M  I  I  G  A  S  M  S :   A  A  T  S  T  L  G  V  M  L  L  G  R  L  F  V  G  I  G  M  G  L  G  P  A  V  A  A  L  Y  V  A  E  :  V  S  P  A  F  V  R  G  T  Y  G  S  F  T  Q  I  A  T  C  L  G  L  L  G  S  L  L  I  G  I  P  A  K  D  T  A  G  W :   W  R  V  C  F  W  I  S  T  I  P  A  A  I  L  A  V  L  M  E  F  C  A  E  S  P  H  W  L  V  K  :  R  G  R  I  D  L  A  E  E  E  L  E  K  L  M  G  A  P  H  V  K  Y  A  I  A  E  M  S  K  T  D  K  G  D  E  V  D  N  V  R  F  G  E  L  L  Y  G  R  H  F  K   : V  V  F  I  G  S  A  L  F  A  L  Q  Q  L  S  G  I  N  A  V  F  Y  F  S  S  T  V  F  K  K  A  G  V  P  T  D  T  A  N  T  C  V  G  I  V  N  L  T   : G  S  I  I  A  M  M  L  M  D  R  L  G  R  K  V  L  L  I  G  S  F  L  G  M  :  A  V  A  T  G  L  Q  V  A  A  A  S  S  F  V  P  S  F  A  V  L  Y  L  S  V  G  G  T  L  L :   Y  V  L  A  F  S  L  G  A  G  P  V  P  S  L  L  L  S  E  I  F  P  G  R  I  R  A  K  A  M  A  L  C  M  A  A  H  W  :  V  I  N  F  L  V  G  L  L  F  L  P  M  L  E  H  L  G  P  Q  I  V  Y  A  I  F  A  G  F  C  L  F  A  L  A  F  V  K  K  N  V  V  E  T  K  G  K  T  L  Q  E  I  E  F  A  L  L  P  S  H  *  L  V  T  R  S  H  S  I  L  K  F  R  L  E  N  V  K  V  L  V  I  E  H  P  N  S  L  L  *  L  F  L  D  L  Y  N  F  G  V  C  S  *  A  G  K  A  A  T  M  N  N  Q  D  K  D  C  H  K  A  S  F  H  R  A  I  V  T  L  L  I  F  A  A  F  L  L  T  P  L  V  G  D  Y  C  L  R  E  H  E  T  A  S  A  S  A  S  S  R  S  H  M  Y  Y  R  V  P  I  V  V  I  F  V  Y  L  S  F  N  F  Y  L  D  L  I  F  V  I  S  M  T  R  K  G  Y  S  K  H  S  L  Q  K  *  C  Y  R  F  *  I  S  K  I  L  V  A  A  L  L  *  Q  E  I  L  V  V  L  *  Y  T  I  D  *  C  *  L  R  F  F  N  I  C  L  Q  </first_frame>
            <second_frame>  F  P  F  L  I  N  F  F  L  K  L  H  Y  Q  Y  A  I  A  S  A  S  Q  N  V  S  G   : G  W  R  I  *  L  G  F  L  L  Q  Y  H  R  S  D  H  T  I  *  E  V  V  V  L  Q  M  L  T  P  C  T  S  V  H  Q  L  K  T  S  S  L  I  M  K  I  E  K  K  I  *  :  I  V  P  K  M  V  C  G  K  K  L  E  T  P  H  G  S  G  R  C  H  I  Y  W  W  Q  L  F  H  H  S  C  L  A  T  I  L   : G  W  L  M  T  L  *  K  A  C  L  W  T  L  T  S  V  A  A  P  W  R  K  :  V  *  L  *  V  H  V  W  E  V  L  F  W  A  L  Y  S  V  V  G  *  Q  M  G  L  V  V  G  E  A  F  N  C  V  L  Y  Q  *  L  *  V  L  L  *   : V  P  Q  P  V  L  L  E  L  C  F  L  E  G  Y  L  L  E  *  G  W  A  L  A  L  L  L  L  L  S  M  L  Q  R :   F  H  Q  L  L  L  E  A  L  M  G  V  S  L  R  S  P  H  A  L  G  S  W  D  L  F  S  L  E  F  L  P  R  I  L  L  V   : G  G  E  F  A  F  G  Y  P  P  F  L  L  Q  Y  L  L  F  *  W  N  S  V  P  R  V  L  T  G  L  L  R :   E  E  E  L  I  *  L  K  K  S  L  K  S  L  W  E  H  H  M  L  N  M  P  L  Q  K  C  Q  R  Q  T  K  E  M  R  W  I  M  L  G  L  E  S  Y  C  M  V  A  I  L  K  :  W  F  S  L  D  L  P  Y  L  L  C  N  N  Y  L  E  *  M  L  Y  F  I  S  L  Q  L  C  L  R  R  L  E  Y  L  R  T  L  Q  I  H  V  L  G  L  *  T  *  Q  :  G  L  L  L  Q  *  C  *  W  I  G  L  G  G  R  C  F  *  L  G  V  F  W  A  W :   Q  S  Q  Q  V  F  K  *  Q  L  R  V  H  L  Y  Q  A  L  Q  Y  Y  T  Y  Q  L  A  G  P  Y   : C  M  C  *  H  F  L  W  V  L  V  Q  S  P  A  S  C  C  Q  R  Y  F  L  A  G  L  E  Q  R  Q  W  L  Y  A  W  L  H  I  G :   S  *  I  F  W  S  A  F  C  F  C  R  C  L  S  I  L  D  H  K  *  F  M  R  S  L  Q  D  F  A  C  L  H  W  P  L  *  K  R  M  W  W  K  R  K  G  K  H  Y  R  R  L  S  L  P  F  F  H  L  I  S  W  *  L  D  H  T  L  Y  *  S  S  D  W  K  M  L  R  S  *  *  L  N  I  Q  I  L  C  Y  S  Y  F  L  I  C  T  I  S  E  C  V  H  R  Q  E  R  Q  Q  Q  *  T  I  K  I  K  I  V  T  K  R  V  F  I  G  Q  L  S  L  C  L  F  L  L  L  F  C  S  L  H  W  S  V  T  I  A  *  G  S  M  K  L  H  L  P  R  P  V  V  D  H  I  C  T  T  E  Y  L  L  L  L  S  L  Y  T  F  L  L  I  F  T  L  I  *  F  L  *  L  A  *  H  G  K  A  T  L  N  I  P  Y  R  N  N  V  T  D  F  E  L  A  R  Y  W  *  L  L  C  C  N  K  K  Y  W  *  Y  C  S  I  Q  L  I  N  V  S  *  D  F  S  I  F  V  F  S </second_frame>
            <third_frame>   F  L  F  *  L  I  S  F  *  N  F  T  T  N  M  Q  *  L  V  P  H  K  T  F  Q  E  :  V  G  V  Y  D  W  D  F  C  Y  S  T  I  D  Q  I  T  Q  Y  E  R  W  W  S  C  R  C  L  L  H  V  Q  A  C  I  N  *  R  P  V  H  *  L  *  R  *  R  R  K  S  R :   S  C  R  K  W  C  V  E  R  N  W  K  P  L  M  E  A  A  V  A  T  Y  T  G  G  N  Y  F  I  T  L  V  W  L  P  S  W  :  G  G  *  *  H  S  R  K  H  V  F  G  P  *  L  Q  W  Q  H  L  G  G  R :   S  S  C  E  Y  M  F  G  R  C  S  F  G  L  Y  I  Q  W  L  D  S  R  W  G  W  S  S  E  R  L  S  T  V  C  S  T  N  D  Y  R  C  F  Y  E  :  C  R  N  Q  Y  S  W  S  Y  A  S  W  K  V  I  C  W  N  R  D  G  P  W  P  C  C  C  C  S  L  C  C  R   : G  F  T  S  F  C  *  R  H  L  W  E  F  H  S  D  R  H  M  P  W  A  P  G  I  S  S  H  W  N  S  C  Q  G  Y  C  W  L  :  V  A  S  L  L  L  D  I  H  H  S  C  C  N  T  C  C  F  D  G  I  L  C  R  E  S  S  L  A  C  *   : E  R  K  N  *  F  S  *  R  R  A  *  K  A  Y  G  S  T  T  C  *  I  C  H  C  R  N  V  K  D  R  Q  R  R  *  G  G  *  C  *  V  W  R  A  I  V  W  S  P  F  *  S :   G  F  H  W  I  C  L  I  C  F  A  T  T  I  W  N  K  C  C  I  L  F  L  F  N  C  V  *  E  G  W  S  T  Y  G  H  C  K  Y  M  C  W  D  C  K  L  N  R :   V  Y  Y  C  N  D  V  D  G  *  A  W  E  E  G  A  S  N  W  E  F  F  G  H   : G  S  R  N  R  S  S  S  S  S  C  E  F  I  C  T  K  L  C  S  I  I  P  I  S  W  R  D  P  T  :  V  C  V  S  I  F  F  G  C  W  S  S  P  Q  P  P  A  V  R  D  I  S  W  P  D  *  S  K  G  N  G  F  M  H  G  C  T  L   : G  H  K  F  F  G  R  P  S  V  S  A  D  A  *  A  S  W  T  T  N  S  L  C  D  L  C  R  I  L  L  V  C  T  G  L  C  E  K  E  C  G  G  N  E  R  E  N  I  T  G  D  *  V  C  P  S  S  I  S  L  V  G  D  *  I  T  L  Y  T  K  V  Q  I  G  K  C  *  G  P  S  D  *  T  S  K  F  F  A  I  A  I  S  *  F  V  Q  F  R  S  V  F  I  G  R  K  G  S  N  N  E  Q  S  R  *  R  L  S  Q  S  E  F  S  *  G  N  C  H  S  A  Y  F  C  C  F  F  A  H  S  T  G  R  *  L  L  P  E  G  A  *  N  C  I  C  L  G  Q  *  *  I  T  Y  V  L  Q  S  T  Y  C  C  Y  L  C  I  P  F  F  *  F  L  P  *  S  D  F  C  N  *  H  D  T  E  R  L  L  *  T  F  L  T  E  I  M  L  Q  I  L  N  *  Q  D  T  G  S  C  S  A  V  T  R  N  I  G  S  I  V  V  Y  N  *  L  M  L  A  E  I  F  Q  Y  L  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82056" stop="82167"/>
                    <exon start="82607" stop="82718"/>
                    <exon start="82842" stop="82909"/>
                    <exon start="83244" stop="83376"/>
                    <exon start="83782" stop="83881"/>
                    <exon start="83946" stop="84058"/>
                    <exon start="84316" stop="84409"/>
                    <exon start="85766" stop="85919"/>
                    <exon start="86008" stop="86151"/>
                    <exon start="86243" stop="86316"/>
                    <exon start="86428" stop="86516"/>
                    <exon start="86915" stop="87029"/>
                    <exon start="88306" stop="88488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSHNMRGGGLADAYSMYKRASTKDQFTDYEDREENLDRAENGVWKEIGNPSWKRPLPHILVAIISSLLFGYHLGVVNDTLESMSLDLDFSGSTLAEGLVVSTCLGGALLGSIFSGWIADGVGRRRGFQLCALPMIIGASMSAATSTLGVMLLGRLFVGIGMGLGPAVAALYVAEVSPAFVRGTYGSFTQIATCLGLLGSLLIGIPAKDTAGWWRVCFWISTIPAAILAVLMEFCAESPHWLVKRGRIDLAEEELEKLMGAPHVKYAIAEMSKTDKGDEVDNVRFGELLYGRHFKVVFIGSALFALQQLSGINAVFYFSSTVFKKAGVPTDTANTCVGIVNLTGSIIAMMLMDRLGRKVLLIGSFLGMAVATGLQVAAASSFVPSFAVLYLSVGGTLLYVLAFSLGAGPVPSLLLSEIFPGRIRAKAMALCMAAHWVINFLVGLLFLPMLEHLGPQIVYAIFAGFCLFALAFVKKNVVETKGKTLQEIEFALLPSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88615" stop="88911"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGKAATMNNQDKDCHKASFHRAIVTLLIFAAFLLTPLVGDYCLREHETASASASSRSHMYYRVPIVVIFVYLSFNFYLDLIFVISMTRKGYSKHSLQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86678" e_stop="87029"/>
            <exon e_start="88306" e_stop="88873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86678" e_stop="87029" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87030" i_stop="88305" i_length="1276"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="88306" e_stop="88873" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86678" stop="87029"/>
              <exon start="88306" stop="88873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG : GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGA</gDNA_template>
            <first_frame> V  S  K  A  A  K  R  *  R  *  V  V  S  V  L  L  L  W  I  T  V  F  N  C  I  L  V  I  M  Y  L  V  T  V  D  S  G  *  I  N  E  R  *  D  N  F  M  L  *  V  A  F  L  T  I  K  E  I  L  Q  M  H  R  C  N  G  Q  L  F  S  S  I  M  G  N  Y  L  C  *  V  C  V  S  I  F  F  G  C  W  S  S  P  Q  P  P  A  V  R  D  I  S  W  P  D  *  S  K  G  N  G  F  M  H  G  C  T  L   : G  H  K  F  F  G  R  P  S  V  S  A  D  A  *  A  S  W  T  T  N  S  L  C  D  L  C  R  I  L  L  V  C  T  G  L  C  E  K  E  C  G  G  N  E  R  E  N  I  T  G  D  *  V  C  P  S  S  I  S  L  V  G  D  *  I  T  L  Y  T  K  V  Q  I  G  K  C  *  G  P  S  D  *  T  S  K  F  F  A  I  A  I  S  *  F  V  Q  F  R  S  V  F  I  G  R  K  G  S  N  N  E  Q  S  R  *  R  L  S  Q  S  E  F  S  *  G  N  C  H  S  A  Y  F  C  C  F  F  A  H  S  T  G  R  *  L  L  P  E  G  A  *  N  C  I  C  L  G  Q  *  *  I  T  Y  V  L  Q  S  T  Y  C  C  Y  L  C  I  P  F  F  *  F  L  P  *  S  D  F  C  N  *  H   </first_frame>
            <second_frame>  S  V  K  Q  L  R  D  E  D  K  *  F  R  Y  C  F  C  G  *  Q  F  S  I  A  F  *  S  L  C  T  W  *  L  L  T  L  V  K  S  M  K  D  E  T  I  L  C  Y  R  *  L  S  *  L  L  R  R  Y  Y  K  C  T  D  A  M  A  S  C  F  L  Q  *  W  E  I  I  Y  V  R  Y  V  L  A  F  S  L  G  A  G  P  V  P  S  L  L  L  S  E  I  F  P  G  R  I  R  A  K  A  M  A  L  C  M  A  A  H  W  :  V  I  N  F  L  V  G  L  L  F  L  P  M  L  E  H  L  G  P  Q  I  V  Y  A  I  F  A  G  F  C  L  F  A  L  A  F  V  K  K  N  V  V  E  T  K  G  K  T  L  Q  E  I  E  F  A  L  L  P  S  H  *  L  V  T  R  S  H  S  I  L  K  F  R  L  E  N  V  K  V  L  V  I  E  H  P  N  S  L  L  *  L  F  L  D  L  Y  N  F  G  V  C  S  *  A  G  K  A  A  T  M  N  N  Q  D  K  D  C  H  K  A  S  F  H  R  A  I  V  T  L  L  I  F  A  A  F  L  L  T  P  L  V  G  D  Y  C  L  R  E  H  E  T  A  S  A  S  A  S  S  R  S  H  M  Y  Y  R  V  P  I  V  V  I  F  V  Y  L  S  F  N  F  Y  L  D  L  I  F  V  I  S  M  </second_frame>
            <third_frame>   Q  *  S  S  *  E  M  K  I  S  S  F  G  T  A  S  V  D  N  S  F  Q  L  H  S  S  H  Y  V  L  G  N  C  *  L  W  L  N  Q  *  K  M  R  Q  F  Y  A  I  G  S  F  L  D  Y  *  G  D  T  T  N  A  Q  M  Q  W  P  V  V  F  F  N  N  G  K  L  F  M  L  G  M  C  *  H  F  L  W  V  L  V  Q  S  P  A  S  C  C  Q  R  Y  F  L  A  G  L  E  Q  R  Q  W  L  Y  A  W  L  H  I  G :   S  *  I  F  W  S  A  F  C  F  C  R  C  L  S  I  L  D  H  K  *  F  M  R  S  L  Q  D  F  A  C  L  H  W  P  L  *  K  R  M  W  W  K  R  K  G  K  H  Y  R  R  L  S  L  P  F  F  H  L  I  S  W  *  L  D  H  T  L  Y  *  S  S  D  W  K  M  L  R  S  *  *  L  N  I  Q  I  L  C  Y  S  Y  F  L  I  C  T  I  S  E  C  V  H  R  Q  E  R  Q  Q  Q  *  T  I  K  I  K  I  V  T  K  R  V  F  I  G  Q  L  S  L  C  L  F  L  L  L  F  C  S  L  H  W  S  V  T  I  A  *  G  S  M  K  L  H  L  P  R  P  V  V  D  H  I  C  T  T  E  Y  L  L  L  L  S  L  Y  T  F  L  L  I  F  T  L  I  *  F  L  *  L  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86895" stop="87029"/>
                    <exon start="88306" stop="88488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEIIYVRYVLAFSLGAGPVPSLLLSEIFPGRIRAKAMALCMAAHWVINFLVGLLFLPMLEHLGPQIVYAIFAGFCLFALAFVKKNVVETKGKTLQEIEFALLPSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88615" stop="88872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGKAATMNNQDKDCHKASFHRAIVTLLIFAAFLLTPLVGDYCLREHETASASASSRSHMYYRVPIVVIFVYLSFNFYLDLIFVISM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83963" e_stop="84058"/>
            <exon e_start="84316" e_stop="84409"/>
            <exon e_start="85766" e_stop="86063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83963" e_stop="84058" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84059" i_stop="84315" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84316" e_stop="84409" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84410" i_stop="85765" i_length="1356"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85766" e_stop="86063" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="84058"/>
              <exon start="84316" stop="84409"/>
              <exon start="85766" stop="86063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG : GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG : AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</gDNA_template>
            <first_frame> *  R  H  L  W  E  F  H  S  D  R  H  M  P  W  A  P  G  I  S  S  H  W  N  S  C  Q  G  Y  C  W  L  :  V  A  S  L  L  L  D  I  H  H  S  C  C  N  T  C  C  F  D  G  I  L  C  R  E  S  S  L  A  C  *   : E  R  K  N  *  F  S  *  R  R  A  *  K  A  Y  G  S  T  T  C  *  I  C  H  C  R  N  V  K  D  R  Q  R  R  *  G  G  *  C  *  V  W  R  A  I  V  W  S  P  F  *  R  Y  N  Y  *  *  C  V  P  I  L  S  I  F  F  C  V  N  K  L  M  N  L  *  L  L  L  F  V  Q  W  F  S  L  D  L  P  Y  L  L  C  N  N  Y  L  E  *  M   </first_frame>
            <second_frame>  R  G  T  Y  G  S  F  T  Q  I  A  T  C  L  G  L  L  G  S  L  L  I  G  I  P  A  K  D  T  A  G  W :   W  R  V  C  F  W  I  S  T  I  P  A  A  I  L  A  V  L  M  E  F  C  A  E  S  P  H  W  L  V  K  :  R  G  R  I  D  L  A  E  E  E  L  E  K  L  M  G  A  P  H  V  K  Y  A  I  A  E  M  S  K  T  D  K  G  D  E  V  D  N  V  R  F  G  E  L  L  Y  G  R  H  F  K  G  I  I  I  D  D  V  F  P  F  C  Q  Y  F  S  V  *  I  S  *  *  I  Y  N  F  C  C  L  Y  S  G  F  H  W  I  C  L  I  C  F  A  T  T  I  W  N  K  C  </second_frame>
            <third_frame>   E  A  L  M  G  V  S  L  R  S  P  H  A  L  G  S  W  D  L  F  S  L  E  F  L  P  R  I  L  L  V   : G  G  E  F  A  F  G  Y  P  P  F  L  L  Q  Y  L  L  F  *  W  N  S  V  P  R  V  L  T  G  L  L  R :   E  E  E  L  I  *  L  K  K  S  L  K  S  L  W  E  H  H  M  L  N  M  P  L  Q  K  C  Q  R  Q  T  K  E  M  R  W  I  M  L  G  L  E  S  Y  C  M  V  A  I  L  K  V  *  L  L  M  M  C  S  H  S  V  N  I  F  L  C  E  *  V  D  E  F  I  T  F  A  V  C  T  V  V  F  I  G  S  A  L  F  A  L  Q  Q  L  S  G  I  N  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83964" stop="84058"/>
                    <exon start="84316" stop="84409"/>
                    <exon start="85766" stop="85969"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGTYGSFTQIATCLGLLGSLLIGIPAKDTAGWWRVCFWISTIPAAILAVLMEFCAESPHWLVKRGRIDLAEEELEKLMGAPHVKYAIAEMSKTDKGDEVDNVRFGELLYGRHFKGIIIDDVFPFCQYFSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="89668" PGL_stop="88342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89668" e_stop="89649"/>
            <exon e_start="89020" e_stop="88641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="89668" e_stop="89649" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89648" i_stop="89021" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="89020" e_stop="88641" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89668" stop="89649"/>
              <exon start="89020" stop="88641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTTTTTTTGTTTGTTTG : TATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGA</gDNA_template>
            <first_frame> S  L  F  L  F  V  C :   I  E  K  S  Q  L  T  L  I  N  C  I  L  Q  Y  Y  Q  Y  F  L  L  Q  Q  S  S  Y  Q  Y  L  A  N  S  K  S  V  T  L  F  L  *  G  M  F  R  V  A  F  P  C  H  A  N  Y  K  N  Q  I  K  V  K  I  K  R  K  V  Y  K  D  N  N  N  R  Y  S  V  V  H  M  *  S  T  T  G  R  G  R  C  S  F  M  L  P  Q  A  I  V  T  D  Q  W  S  E  Q  K  S  S  K  N  K  Q  S  D  N  C  P  M  K  T  R  F  V  T  I  F  I  L  </first_frame>
            <second_frame>  P  F  F  C  L  F   : V  L  K  N  L  S  *  H  *  S  I  V  Y  Y  N  T  T  N  I  S  C  Y  S  R  A  A  T  S  I  L  L  I  Q  N  L  *  H  Y  F  C  K  E  C  L  E  *  P  F  R  V  M  L  I  T  K  I  R  S  R  *  K  L  K  E  R  Y  T  K  I  T  T  I  G  T  L  *  Y  I  C  D  L  L  L  A  E  A  D  A  V  S  C  S  L  R  Q  *  S  P  T  S  G  V  S  K  K  A  A  K  I  S  R  V  T  I  A  L  *  K  L  A  L  *  Q  S  L  S  * </second_frame>
            <third_frame>   P  F  F  V  C  L  :  Y  *  K  I  S  A  N  I  N  Q  L  Y  T  T  I  L  P  I  F  L  V  T  A  E  Q  L  P  V  S  C  *  F  K  I  C  N  I  I  S  V  R  N  V  *  S  S  L  S  V  S  C  *  L  Q  K  S  D  Q  G  K  N  *  K  K  G  I  Q  R  *  Q  Q  *  V  L  C  S  T  Y  V  I  Y  Y  W  P  R  Q  M  Q  F  H  A  P  S  G  N  S  H  R  P  V  E  *  A  K  K  Q  Q  K  *  A  E  *  Q  L  P  Y  E  N  S  L  C  D  N  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89667" e_stop="89645"/>
            <exon e_start="89018" e_stop="88342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.652">
            <gDNA_exon_boundary e_start="89667" e_stop="89645" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89644" i_stop="89019" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89018" e_stop="88342" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89667" stop="89645"/>
              <exon start="89018" stop="88342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTTTTTTGTTTGTTTGATTT : TTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</gDNA_template>
            <first_frame> P  F  F  C  L  F  D  F :   *  K  I  S  A  N  I  N  Q  L  Y  T  T  I  L  P  I  F  L  V  T  A  E  Q  L  P  V  S  C  *  F  K  I  C  N  I  I  S  V  R  N  V  *  S  S  L  S  V  S  C  *  L  Q  K  S  D  Q  G  K  N  *  K  K  G  I  Q  R  *  Q  Q  *  V  L  C  S  T  Y  V  I  Y  Y  W  P  R  Q  M  Q  F  H  A  P  S  G  N  S  H  R  P  V  E  *  A  K  K  Q  Q  K  *  A  E  *  Q  L  P  Y  E  N  S  L  C  D  N  L  Y  L  D  C  S  L  L  L  P  F  L  P  M  N  T  L  R  N  C  T  N  Q  E  I  A  I  A  K  N  L  D  V  Q  S  L  G  P  *  H  F  P  I  *  T  L  V  *  S  V  I  *  S  P  T  N  E  M  E  E  G  Q  T  Q  S  P  V  M  F  S  L  S  F  P  P  H  S  F  S  Q  R  P  V  Q  T  S  K  I  L  Q  R  S  H  K  L  F  V  V  Q  D  A  Q  A  </first_frame>
            <second_frame>  P  F  F  V  C  L  I   : F  E  K  S  Q  L  T  L  I  N  C  I  L  Q  Y  Y  Q  Y  F  L  L  Q  Q  S  S  Y  Q  Y  L  A  N  S  K  S  V  T  L  F  L  *  G  M  F  R  V  A  F  P  C  H  A  N  Y  K  N  Q  I  K  V  K  I  K  R  K  V  Y  K  D  N  N  N  R  Y  S  V  V  H  M  *  S  T  T  G  R  G  R  C  S  F  M  L  P  Q  A  I  V  T  D  Q  W  S  E  Q  K  S  S  K  N  K  Q  S  D  N  C  P  M  K  T  R  F  V  T  I  F  I  L  I  V  H  C  C  C  L  S  C  L  *  T  H  S  E  I  V  Q  I  K  K  *  L  *  Q  R  I  W  M  F  N  H  *  D  L  N  I  F  Q  S  E  L  *  Y  R  V  *  S  S  H  Q  L  M  R  W  K  K  G  K  L  N  L  L  *  C  F  P  F  R  F  H  H  I  L  F  H  K  G  Q  C  K  Q  A  K  S  C  K  D  R  I  N  Y  L  W  S  K  M  L  K  H </second_frame>
            <third_frame>   L  F  L  F  V  *  F  :  L  K  N  L  S  *  H  *  S  I  V  Y  Y  N  T  T  N  I  S  C  Y  S  R  A  A  T  S  I  L  L  I  Q  N  L  *  H  Y  F  C  K  E  C  L  E  *  P  F  R  V  M  L  I  T  K  I  R  S  R  *  K  L  K  E  R  Y  T  K  I  T  T  I  G  T  L  *  Y  I  C  D  L  L  L  A  E  A  D  A  V  S  C  S  L  R  Q  *  S  P  T  S  G  V  S  K  K  A  A  K  I  S  R  V  T  I  A  L  *  K  L  A  L  *  Q  S  L  S  *  L  F  I  V  A  A  F  P  A  Y  E  H  T  P  K  L  Y  K  S  R  N  S  Y  S  K  E  F  G  C  S  I  T  R  T  L  T  F  S  N  L  N  F  S  I  E  C  D  L  V  T  N  *  *  D  G  R  R  A  N  S  I  S  C  N  V  F  P  F  V  S  T  T  F  F  F  T  K  A  S  A  N  K  Q  N  P  A  K  I  A  *  T  I  C  G  P  R  C  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="90047" PGL_stop="97105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90047" e_stop="90247"/>
            <exon e_start="90676" e_stop="90747"/>
            <exon e_start="90858" e_stop="91070"/>
            <exon e_start="96666" e_stop="96925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90047" e_stop="90247" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90676" e_stop="90747" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.610" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90858" e_stop="91070" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="96666" e_stop="96925" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90047" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="91070"/>
              <exon start="96666" stop="96704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90048" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="91070"/>
              <exon start="96666" stop="96925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90048" stop="90247"/>
              <exon start="90676" stop="90712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90052" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="91070"/>
              <exon start="96666" stop="96924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90053" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="90945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG : CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA : CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG : GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCT</gDNA_template>
            <first_frame> I  L  F  G  *  Q  W  E  E  L  K  Q  T  M  K  E  K  H  L  R  Q  R  V  V  L  N  Q  L  P  H  S  L  N  S  S  K  E  Y  K  V  C  I  S  H  H  H  T  *  Q  L  E  L  L  G  V  L  A  Y  L  I  V  I  W  T  K  L  M  :  L  S  *  R  R  S  Y  L  V  *  H  L  D  K  *  Q  K  S  L  M  Q  D  K  *  :  H  A  L  W  G  L  S  Y  T  C  *  *  C  L  L  S  A  L  S  G  S  W  A  Q  N  I  E  P  N  *  D  K  D  I  I  *  W  K  L  L  I  Q  T  *  F  P  I  C  S  V  H  V  A  L  F  V  K  N  S  E  S  F  E  T  G  D  L  I  P  L  *  :  G  G  M  V  *  L  L  S  D  T  M  G  T  N  K  *  I  K  L  L  K  Y  N  P  C  Q  C  K  N  S  R  L  *  F  F  I  C  L  I  *  G  C  G  V  L  V  K  T  R  F  C  S  C  L  K  L  Y  P  *  N  S  T  I  L  L  A  V  L  V  V  *  T  M  F  L  Q  P  Q  F  E  L  D  Y  K  Q  C   </first_frame>
            <second_frame>  Y  Y  L  D  N  N  G  K  S  *  S  K  Q  *  R  R  N  I  S  G  R  E  W  Y  *  T  S  C  L  T  A  S  T  V  P  R  S  T  K  C  V  S  V  T  I  T  L  N  N  W  S  S  L  E  Y  W  L  I  *  L  S  S  G  P  N  *  C :   C  H  D  G  V  L  T  L  C  N  I  W  T  N  S  R  S  P  *  C  R  T  N  D :   M  P  F  G  D  F  H  I  H  A  D  D  A  C  C  L  L  S  V  D  H  G  L  K  I  *  N  P  I  E  T  K  I  *  S  S  G  S  S  L  F  R  H  D  F  P  Y  V  L  S  M  L  L  S  L  S  R  I  Q  R  A  S  K  Q  G  T  *  S  R  S  R :   V  E  W  Y  S  C  S  A  T  L  W  E  P  T  S  E  S  S  S  S  S  T  I  H  V  N  V  K  I  Q  D  C  D  S  L  F  V  *  F  E  V  V  V  C  *  *  K  P  D  S  V  H  V  *  S  C  I  L  K  T  Q  P  Y  C  W  L  C  *  L  F  E  L  C  F  Y  N  P  N  S  S  *  I  I  N  N  A  </second_frame>
            <third_frame>   T  I  W  I  T  M  G  R  V  E  A  N  N  E  G  E  T  S  Q  A  E  S  G  T  E  P  A  A  S  Q  P  Q  Q  F  Q  G  V  Q  S  V  Y  Q  S  P  S  H  L  T  I  G  A  P  W  S  T  G  L  F  D  C  H  L  D  Q  T  N   : A  V  M  T  A  F  L  P  C  V  T  F  G  Q  I  A  E  V  L  D  A  G  Q  M   : T  C  P  L  G  T  F  I  Y  M  L  M  M  P  A  V  C  S  Q  W  I  M  G  S  K  Y  R  T  Q  L  R  Q  R  Y  N  L  V  E  A  P  Y  S  D  M  I  S  H  M  F  C  P  C  C  S  L  C  Q  E  F  R  E  L  R  N  R  G  L  D  P  A  L   : G  W  N  G  I  V  A  Q  R  H  Y  G  N  Q  Q  V  N  Q  A  P  Q  V  Q  S  M  S  M  *  K  F  K  I  V  I  L  Y  L  F  D  L  R  L  W  C  V  S  K  N  Q  I  L  F  M  F  E  V  V  S  L  K  L  N  H  I  V  G  C  V  S  C  L  N  Y  V  F  T  T  P  I  R  V  R  L  *  T  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90049" stop="90247"/>
                    <exon start="90676" stop="90747"/>
                    <exon start="90858" stop="91070"/>
                    <exon start="96666" stop="96748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWITMGRVEANNEGETSQAESGTEPAASQPQQFQGVQSVYQSPSHLTIGAPWSTGLFDCHLDQTNAVMTAFLPCVTFGQIAEVLDAGQMTCPLGTFIYMLMMPAVCSQWIMGSKYRTQLRQRYNLVEAPYSDMISHMFCPCCSLCQEFRELRNRGLDPALGWNGIVAQRHYGNQQVNQAPQVQSMSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90047" e_stop="90247"/>
            <exon e_start="90676" e_stop="90747"/>
            <exon e_start="90858" e_stop="91070"/>
            <exon e_start="96666" e_stop="96904"/>
            <exon e_start="97078" e_stop="97105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="0.967"/>
          <exon-only e_score="0.536"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90047" e_stop="90247" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90248" i_stop="90675" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="90676" e_stop="90747" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.610" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90748" i_stop="90857" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="90858" e_stop="91070" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91071" i_stop="96665" i_length="5595"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="96666" e_stop="96904" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="96905" i_stop="97077" i_length="173"/>
          </intron>
          <exon e_serial="5" e_score="0.536">
            <gDNA_exon_boundary e_start="97078" e_stop="97105" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90047" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="91070"/>
              <exon start="96666" stop="96704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90048" stop="90247"/>
              <exon start="90676" stop="90712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90053" stop="90247"/>
              <exon start="90676" stop="90747"/>
              <exon start="90858" stop="90945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90938" stop="91070"/>
              <exon start="96666" stop="96904"/>
              <exon start="97078" stop="97105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG : CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA : CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG : GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGA : GAAGCATTAAAACCAAACCATCAAGAAC</gDNA_template>
            <first_frame> I  L  F  G  *  Q  W  E  E  L  K  Q  T  M  K  E  K  H  L  R  Q  R  V  V  L  N  Q  L  P  H  S  L  N  S  S  K  E  Y  K  V  C  I  S  H  H  H  T  *  Q  L  E  L  L  G  V  L  A  Y  L  I  V  I  W  T  K  L  M  :  L  S  *  R  R  S  Y  L  V  *  H  L  D  K  *  Q  K  S  L  M  Q  D  K  *  :  H  A  L  W  G  L  S  Y  T  C  *  *  C  L  L  S  A  L  S  G  S  W  A  Q  N  I  E  P  N  *  D  K  D  I  I  *  W  K  L  L  I  Q  T  *  F  P  I  C  S  V  H  V  A  L  F  V  K  N  S  E  S  F  E  T  G  D  L  I  P  L  *  :  G  G  M  V  *  L  L  S  D  T  M  G  T  N  K  *  I  K  L  L  K  Y  N  P  C  Q  C  K  N  S  R  L  *  F  F  I  C  L  I  *  G  C  G  V  L  V  K  T  R  F  C  S  C  L  K  L  Y  P  *  N  S  T  I  L  L  A  V  L  V  V  *  T  M  F  L  Q  P  Q  F  E :   K  H  *  N  Q  T  I  K  N </first_frame>
            <second_frame>  Y  Y  L  D  N  N  G  K  S  *  S  K  Q  *  R  R  N  I  S  G  R  E  W  Y  *  T  S  C  L  T  A  S  T  V  P  R  S  T  K  C  V  S  V  T  I  T  L  N  N  W  S  S  L  E  Y  W  L  I  *  L  S  S  G  P  N  *  C :   C  H  D  G  V  L  T  L  C  N  I  W  T  N  S  R  S  P  *  C  R  T  N  D :   M  P  F  G  D  F  H  I  H  A  D  D  A  C  C  L  L  S  V  D  H  G  L  K  I  *  N  P  I  E  T  K  I  *  S  S  G  S  S  L  F  R  H  D  F  P  Y  V  L  S  M  L  L  S  L  S  R  I  Q  R  A  S  K  Q  G  T  *  S  R  S  R :   V  E  W  Y  S  C  S  A  T  L  W  E  P  T  S  E  S  S  S  S  S  T  I  H  V  N  V  K  I  Q  D  C  D  S  L  F  V  *  F  E  V  V  V  C  *  *  K  P  D  S  V  H  V  *  S  C  I  L  K  T  Q  P  Y  C  W  L  C  *  L  F  E  L  C  F  Y  N  P  N  S   : R  S  I  K  T  K  P  S  R   </second_frame>
            <third_frame>   T  I  W  I  T  M  G  R  V  E  A  N  N  E  G  E  T  S  Q  A  E  S  G  T  E  P  A  A  S  Q  P  Q  Q  F  Q  G  V  Q  S  V  Y  Q  S  P  S  H  L  T  I  G  A  P  W  S  T  G  L  F  D  C  H  L  D  Q  T  N   : A  V  M  T  A  F  L  P  C  V  T  F  G  Q  I  A  E  V  L  D  A  G  Q  M   : T  C  P  L  G  T  F  I  Y  M  L  M  M  P  A  V  C  S  Q  W  I  M  G  S  K  Y  R  T  Q  L  R  Q  R  Y  N  L  V  E  A  P  Y  S  D  M  I  S  H  M  F  C  P  C  C  S  L  C  Q  E  F  R  E  L  R  N  R  G  L  D  P  A  L   : G  W  N  G  I  V  A  Q  R  H  Y  G  N  Q  Q  V  N  Q  A  P  Q  V  Q  S  M  S  M  *  K  F  K  I  V  I  L  Y  L  F  D  L  R  L  W  C  V  S  K  N  Q  I  L  F  M  F  E  V  V  S  L  K  L  N  H  I  V  G  C  V  S  C  L  N  Y  V  F  T  T  P  I  R  :  E  A  L  K  P  N  H  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90049" stop="90247"/>
                    <exon start="90676" stop="90747"/>
                    <exon start="90858" stop="91070"/>
                    <exon start="96666" stop="96748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWITMGRVEANNEGETSQAESGTEPAASQPQQFQGVQSVYQSPSHLTIGAPWSTGLFDCHLDQTNAVMTAFLPCVTFGQIAEVLDAGQMTCPLGTFIYMLMMPAVCSQWIMGSKYRTQLRQRYNLVEAPYSDMISHMFCPCCSLCQEFRELRNRGLDPALGWNGIVAQRHYGNQQVNQAPQVQSMSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="102820" PGL_stop="100727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102820" e_stop="102755"/>
            <exon e_start="102260" e_stop="102192"/>
            <exon e_start="101204" e_stop="100727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102820" e_stop="102755" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102754" i_stop="102261" i_length="494"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102260" e_stop="102192" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.937">
            <gDNA_intron_boundary i_start="102191" i_stop="101205" i_length="987"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="101204" e_stop="100727" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102820" stop="102755"/>
              <exon start="102260" stop="102192"/>
              <exon start="101204" stop="100727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG : GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT : GATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAATTTTAT</gDNA_template>
            <first_frame> T  D  T  A  S  V  L  S  E  A  I  G  Y  I  R  F  L  Q  A  Q  I  Q  :  A  L  S  S  P  Y  L  G  N  A  S  G  S  M  G  H  I  P  Q  Q  S  L  N  :  D  S  Q  H  K  P  M  D  L  R  S  R  G  L  C  L  V  P  I  S  C  M  A  N  I  G  S  D  T  G  A  D  Y  W  A  P  A  L  G  G  G  F  *  C  Y  E  L  I  G  F  *  V  I  Y  T  D  S  V  K  I  L  R  R  Q  Q  T  D  D  K  T  Y  R  S  L  C  V  L  M  E  *  M  I  *  H  H  K  A  V  I  L  S  M  K  V  R  A  D  C  L  *  C  Y  F  A  F  E  I  G  S  M  I  K  W  Y  F  P  M  Y  N  M  V  L  F  S  *  I  S  *  I  I  L  L  P  Y  K  V  V  H  N  C  C  I  C  N  L  E  I  H  R  Y  N  Q  H  I  V  S  K  I  L  </first_frame>
            <second_frame>  L  I  Q  P  P  S  Y  Q  K  L  L  A  T  S  D  S  F  R  L  K  F  R :   H  *  A  H  H  T  W  A  M  H  Q  E  A  W  V  T  F  P  N  N  H  *  M :   I  L  S  T  N  R  W  I  *  G  V  E  G  C  A  W  F  L  F  L  A  W  Q  I  *  E  V  I  P  A  P  I  I  G  L  Q  L  S  E  E  D  F  D  V  T  S  *  L  D  F  K  L  Y  T  L  T  V  *  K  Y  *  D  D  N  K  L  M  I  R  R  I  G  A  S  V  S  S  W  N  E  *  Y  N  I  T  K  Q  S  F  S  V  *  K  S  E  L  T  V  C  D  A  I  L  H  L  K  S  G  Q  *  *  S  G  I  F  Q  C  T  I  W  S  Y  F  L  E  F  H  E  *  S  Y  Y  L  T  R  *  F  I  T  V  V  Y  V  T  W  K  S  I  G  T  I  N  I  S  F  R  K  F  Y </second_frame>
            <third_frame>   *  Y  S  L  R  P  I  R  S  Y  W  L  H  Q  I  P  S  G  S  N  S   : G  I  K  L  T  I  L  G  Q  C  I  R  K  H  G  S  H  S  P  T  I  T  E   : *  F  S  A  Q  T  D  G  F  K  E  *  R  V  V  L  G  S  Y  F  L  H  G  K  Y  R  K  *  Y  R  R  R  L  L  G  S  S  S  R  R  R  I  L  M  L  R  A  D  W  I  L  S  Y  I  H  *  Q  C  K  N  T  E  T  T  T  N  *  *  *  D  V  S  E  P  L  C  P  H  G  M  N  D  I  T  S  Q  S  S  H  S  Q  Y  E  S  Q  S  *  L  F  V  M  L  F  C  I  *  N  R  V  N  D  K  V  V  F  S  N  V  Q  Y  G  P  I  F  L  N  F  M  N  N  L  T  T  L  Q  G  S  S  *  L  L  Y  M  *  L  G  N  P  *  V  Q  S  T  Y  R  F  E  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102820" stop="102755"/>
                    <exon start="102260" stop="102192"/>
                    <exon start="101204" stop="101076"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDTASVLSEAIGYIRFLQAQIQALSSPYLGNASGSMGHIPQQSLNDSQHKPMDLRSRGLCLVPISCMANIGSDTGADYWAPALGGGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="105207" PGL_stop="104321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105207" e_stop="104946"/>
            <exon e_start="104575" e_stop="104321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105207" e_stop="104946" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.983">
            <gDNA_intron_boundary i_start="104945" i_stop="104576" i_length="370"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104575" e_stop="104321" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="104946"/>
              <exon start="104575" stop="104321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTAT : GAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTG</gDNA_template>
            <first_frame> R  D  T  G  E  E  R  L  Q  N  L  C  *  E  K  R  V  K  N  N  H  *  S  S  S  K  *  W  L  E  T  L  L  I  G  G  A  *  S  *  M  E  T  C  I  H  N  Y  L  M  I  M  I  N  I  I  L  L  L  L  I  L  I  L  I  L  H  I  F  M  E  L  I  I  Q  I  K  I  F  L  V  H  *  A  N  F  L   : *  M  D  F  V  V  M  K  K  S  L  V  L  V  L  F  M  P  P  G  I  R  K  T  K  V  *  I  P  S  I  Q  H  H  Q  Q  L  I  L  G  F  L  L  L  M  *  S  Q  N  C  I  I  I  I  M  A  T  T  N  F  K  H  L  H  R  Y  K  K  N  S  N  *  I  L  I  I  L  P  G  L  *  L  L  L  I  </first_frame>
            <second_frame>  E  I  Q  E  K  K  D  C  K  I  C  V  E  R  R  G  *  R  I  I  I  S  R  V  A  N  D  G  W  K  P  Y  *  L  V  E  H  D  H  E  W  K  H  A  S  T  I  I  S  *  S  *  S  T  *  F  F  F  F  *  F  *  F  *  F  F  T  F  L  W  S  S  *  S  K  S  R  F  S  S  F  I  E  P  T  S  Y  :  E  W  I  L  W  *  *  R  K  V  W  Y  *  S  F  S  C  R  R  E  F  G  R  P  K  F  E  F  R  P  S  N  I  I  N  S  *  F  *  G  S  C  C  *  C  K  A  R  I  V  S  S  S  S  W  P  Q  R  I  S  N  I  F  I  A  T  R  K  T  R  I  R  Y  *  S  F  Y  Q  A  F  N  C  F  *  L </second_frame>
            <third_frame>   R  Y  R  R  R  K  I  A  K  F  V  L  R  E  E  G  E  E  *  S  L  V  E  *  Q  M  M  A  G  N  P  T  N  W  W  S  M  I  M  N  G  N  M  H  P  Q  L  S  H  D  H  D  Q  H  N  S  S  S  S  N  S  N  S  N  S  S  H  F  Y  G  A  H  N  P  N  Q  D  F  P  R  S  L  S  Q  L  L  M :   N  G  F  C  G  D  E  E  K  F  G  I  S  P  F  H  A  A  G  N  S  E  D  Q  S  L  N  S  V  H  P  T  S  S  T  A  N  F  R  V  P  V  A  D  V  K  P  E  L  Y  H  H  H  H  G  H  N  E  F  Q  T  S  S  S  L  Q  E  K  L  E  L  D  T  D  H  F  T  R  P  L  I  A  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105133" stop="104946"/>
                    <exon start="104575" stop="104323"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMAGNPTNWWSMIMNGNMHPQLSHDHDQHNSSSSNSNSNSSHFYGAHNPNQDFPRSLSQLLMNGFCGDEEKFGISPFHAAGNSEDQSLNSVHPTSSTANFRVPVADVKPELYHHHHGHNEFQTSSSLQEKLELDTDHFTRPLIASN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="115370" PGL_stop="108423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115370" e_stop="115073"/>
            <exon e_start="114271" e_stop="114158"/>
            <exon e_start="114051" e_stop="113898"/>
            <exon e_start="113052" e_stop="112916"/>
            <exon e_start="111134" e_stop="111034"/>
            <exon e_start="110234" e_stop="110117"/>
            <exon e_start="109845" e_stop="109679"/>
            <exon e_start="109124" e_stop="108769"/>
            <exon e_start="108440" e_stop="108423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="0.985"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115370" e_stop="115073" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="115072" i_stop="114272" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114271" e_stop="114158" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114051" e_stop="113898" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="113052" e_stop="112916" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="112915" i_stop="111135" i_length="1781"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111134" e_stop="111034" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110234" e_stop="110117" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109845" e_stop="109679" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="109124" e_stop="108769" e_length="356"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.361">
            <gDNA_intron_boundary i_start="108768" i_stop="108441" i_length="328"/>
          </intron>
          <exon e_serial="9" e_score="0.722">
            <gDNA_exon_boundary e_start="108440" e_stop="108423" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115370" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113898"/>
              <exon start="113052" stop="112921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115361" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115333" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113898"/>
              <exon start="113052" stop="113009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115327" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113898"/>
              <exon start="113052" stop="112964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115326" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115321" stop="115073"/>
              <exon start="114271" stop="114158"/>
              <exon start="114051" stop="113933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114235" stop="114158"/>
              <exon start="114051" stop="113898"/>
              <exon start="113052" stop="113011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112960" stop="112916"/>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="109010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="109075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111051" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108769"/>
              <exon start="108440" stop="108423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110208" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA : ACTAAAAAAAATAGGATC</gDNA_template>
            <first_frame> L  C  L  K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : V  S  H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F  I  E  C  F  N  F  L  I  V  W  L  S  L  F  L  Y  F  T  S  H  L  F  I  *  L  K  D  N  F  L  K :   L  K  K  I  G   </first_frame>
            <second_frame>  C  V  S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  S  A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  L  S  A  L  I  F  *  *  C  G  C  P  F  S  C  I  L  H  L  I  C  L  F  N  *  K  I  I  F  S   : N  *  K  K  *  D  </second_frame>
            <third_frame>   V  S  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   Q  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  Y  *  V  L  *  F  F  N  S  V  V  V  P  F  P  V  F  Y  I  S  F  V  Y  L  I  E  R  *  F  S  Q  :  T  K  K  N  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115225" stop="115073"/>
                    <exon start="114271" stop="114158"/>
                    <exon start="114051" stop="113898"/>
                    <exon start="113052" stop="112916"/>
                    <exon start="111134" stop="111034"/>
                    <exon start="110234" stop="110117"/>
                    <exon start="109845" stop="109679"/>
                    <exon start="109124" stop="108995"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGRDMDRQNLASSSAPRGGATVHPPPQHDAWINTYRNLHPQWQSLLPPPQQSAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113230" e_stop="112916"/>
            <exon e_start="111134" e_stop="111034"/>
            <exon e_start="110234" e_stop="110117"/>
            <exon e_start="109845" e_stop="109679"/>
            <exon e_start="109124" e_stop="108769"/>
            <exon e_start="108440" e_stop="108423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113230" e_stop="112916" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="112915" i_stop="111135" i_length="1781"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111134" e_stop="111034" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="111033" i_stop="110235" i_length="799"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110234" e_stop="110117" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="110116" i_stop="109846" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109845" e_stop="109679" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="109678" i_stop="109125" i_length="554"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109124" e_stop="108769" e_length="356"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.361">
            <gDNA_intron_boundary i_start="108768" i_stop="108441" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="0.722">
            <gDNA_exon_boundary e_start="108440" e_stop="108423" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113230" stop="112916"/>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113230" stop="112916"/>
              <exon start="111134" stop="111039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113230" stop="112921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113220" stop="112921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112960" stop="112916"/>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="109010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111134" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="109075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111051" stop="111034"/>
              <exon start="110234" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108769"/>
              <exon start="108440" stop="108423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110208" stop="110117"/>
              <exon start="109845" stop="109679"/>
              <exon start="109124" stop="108861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA : ACTAAAAAAAATAGGATC</gDNA_template>
            <first_frame> I  S  K  G  V  *  S  I  *  F  G  R  I  V  L  E  N  L  L  C  L  T  L  C  L  K  C  *  G  *  Q  L  D  A  V  S  F  F  L  S  C  I  N  C  Y  N  F  S  C  S  S  V  S  F  S  M  F  F  I  V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  L  S  A  L  I  F  *  *  C  G  C  P  F  S  C  I  L  H  L  I  C  L  F  N  *  K  I  I  F  S   : N  *  K  K  *  D  </first_frame>
            <second_frame>  L  A  R  V  Y  N  Q  S  D  L  E  G  L  S  W  K  I  S  F  V  L  L  C  V  *  S  A  K  V  D  S  L  M  Q  F  H  F  F  F  L  A  S  T  A  I  I  S  V  V  V  L  F  P  F  P  C  F  L  *  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  Y  *  V  L  *  F  F  N  S  V  V  V  P  F  P  V  F  Y  I  S  F  V  Y  L  I  E  R  *  F  S  Q  :  T  K  K  N  R  I </second_frame>
            <third_frame>   *  Q  G  C  I  I  N  L  I  W  K  D  C  L  G  K  S  P  L  S  Y  F  V  F  E  V  L  R  L  T  A  *  C  S  F  I  F  S  F  L  H  Q  L  L  *  F  Q  L  *  F  C  F  L  F  H  V  F  Y  S  E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F  I  E  C  F  N  F  L  I  V  W  L  S  L  F  L  Y  F  T  S  H  L  F  I  *  L  K  D  N  F  L  K :   L  K  K  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113140" stop="112916"/>
                    <exon start="111134" stop="111034"/>
                    <exon start="110234" stop="110117"/>
                    <exon start="109845" stop="109679"/>
                    <exon start="109124" stop="108995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLDAVSFFLSCINCYNFSCSSVSFSMFFIVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="115363" e_stop="115073"/>
            <exon e_start="114267" e_stop="114158"/>
            <exon e_start="114051" e_stop="113898"/>
            <exon e_start="113052" e_stop="113011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.178" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="0.973"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="115363" e_stop="115073" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.178">
            <gDNA_intron_boundary i_start="115072" i_stop="114268" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="114267" e_stop="114158" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="114157" i_stop="114052" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114051" e_stop="113898" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="113897" i_stop="113053" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113052" e_stop="113011" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115363" stop="115073"/>
              <exon start="114267" stop="114158"/>
              <exon start="114051" stop="113979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114235" stop="114158"/>
              <exon start="114051" stop="113898"/>
              <exon start="113052" stop="113011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : CCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</gDNA_template>
            <first_frame> S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K </first_frame>
            <second_frame>  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S   </second_frame>
            <third_frame>   K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115244" stop="115073"/>
                    <exon start="114267" stop="114158"/>
                    <exon start="114051" stop="113898"/>
                    <exon start="113052" stop="113012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLNYLVRPRYGQTKPSFILRSPWWCDCPSSPTTRCLDQYLPEFASSMAISSSSTATAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="119167" PGL_stop="120333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119167" e_stop="119327"/>
            <exon e_start="119674" e_stop="119924"/>
            <exon e_start="120062" e_stop="120333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119167" e_stop="119327" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="119328" i_stop="119673" i_length="346"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119674" e_stop="119924" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.801" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119925" i_stop="120061" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="120062" e_stop="120333" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119167" stop="119327"/>
              <exon start="119674" stop="119924"/>
              <exon start="120062" stop="120333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119168" stop="119327"/>
              <exon start="119674" stop="119861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA : ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTG : ACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTTGGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</gDNA_template>
            <first_frame> V  Y  C  S  V  *  L  I  L  V  S  K  C  L  V  *  L  R  T  F  *  R  F  A  Q  L  W  V  Y  *  G  L  S  C  *  I  Y  L  H  L  A  F  R  L  R  R  C  W  F  C  H  C  L  Q :   *  V  D  S  R  C  C  S  *  S  C  R  T  S  C  G  S  S  L  P  W  I  C  S  L  R  G  R  F  Y  W  C  *  H  L  R  W  S  R  *  S  R  C  Y  F  W  F  S  S  W  R  P  N  Y  P  S  H  R  P  V  L  L  G  G  S  A  F  G  R  H  S  C  L  L  P  P  Q  V  C  Y  R  R  I   : D  C  S  N  P  R  C  G  S  W  C  R  S  Y  *  R  S  C  N  G  N  Y  H  H  I  R  V  G  V  H  C  V  R  H  S  S  *  P  Q  E  G  I  I  G  Y  N  C  T  Y  C  H  W  F  H  C  W  C  *  H  F  G  C  G  P  I  L  R  R  F  N  E  S  S  P  F  F  W  A  C  S  C  *  W  Q  L  R  W  *  L  D  L </first_frame>
            <second_frame>  F  I  A  A  F  N  *  F  *  S  Q  N  A  L  Y  S  L  G  R  F  D  D  S  L  N  C  G  S  I  K  A  Y  L  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  L  T  A  D  A  A  L  D  P  A  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  S  I  G  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  V  A  Q  L  L  G  A  I  V  A  C  C  L  L  K  F  V  T  G  G  L  :  T  V  P  I  H  G  V  A  A  G  V  G  A  T  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  N  W  I   </second_frame>
            <third_frame>   L  L  Q  R  L  I  N  F  S  L  K  M  P  C  I  A  *  D  V  L  T  I  R  S  I  V  G  L  L  R  P  I  L  L  N  L  S  P  P  C  F  S  S  S  P  V  L  V  L  P  L  P  T  :  I  S  *  Q  Q  M  L  L  L  I  L  P  D  *  L  R  *  Q  F  A  M  D  L  L  S  S  W  P  F  L  L  V  L  T  S  P  V  V  T  L  I  P  L  L  L  L  V  *  L  L  E  A  K  L  P  F  S  P  A  C  F  T  G  W  L  S  F  W  A  P  *  L  L  A  A  S  S  S  L  L  P  E  D  * :   L  F  Q  S  T  V  W  Q  L  V  *  E  L  L  K  E  L  *  W  K  L  S  S  H  S  R  W  C  T  L  C  T  P  Q  Q  L  T  P  R  R  D  H  W  V  Q  L  H  L  L  P  L  V  S  L  L  V  L  T  F  W  L  R  A  H  S  P  E  V  Q  *  I  Q  P  V  L  L  G  L  Q  L  L  V  A  T  S  L  V  T  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119195" stop="119327"/>
                    <exon start="119674" stop="119924"/>
                    <exon start="120062" stop="120331"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQNALYSLGRFDDSLNCGSIKAYLAEFISTLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLALGGQITLLTGLFYWVAQLLGAIVACCLLKFVTGGLTVPIHGVAAGVGATEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGNWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="123672" PGL_stop="121800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123672" e_stop="123643"/>
            <exon e_start="123564" e_stop="123429"/>
            <exon e_start="123186" e_stop="123064"/>
            <exon e_start="122983" e_stop="122813"/>
            <exon e_start="122450" e_stop="122391"/>
            <exon e_start="122314" e_stop="121800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.452" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.093" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.805" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123672" e_stop="123643" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.452" acc_prob="0.033">
            <gDNA_intron_boundary i_start="123642" i_stop="123565" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123564" e_stop="123429" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123428" i_stop="123187" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123186" e_stop="123064" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.093" acc_prob="0.774">
            <gDNA_intron_boundary i_start="123063" i_stop="122984" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122983" e_stop="122813" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.741" acc_prob="0.996">
            <gDNA_intron_boundary i_start="122812" i_stop="122451" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122450" e_stop="122391" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.805">
            <gDNA_intron_boundary i_start="122390" i_stop="122315" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="122314" e_stop="121800" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123672" stop="123643"/>
              <exon start="123564" stop="123429"/>
              <exon start="123186" stop="123064"/>
              <exon start="122983" stop="122813"/>
              <exon start="122450" stop="122391"/>
              <exon start="122314" stop="122162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123672" stop="123643"/>
              <exon start="123564" stop="123429"/>
              <exon start="123186" stop="123064"/>
              <exon start="122983" stop="122813"/>
              <exon start="122450" stop="122391"/>
              <exon start="122314" stop="122307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123186" stop="123064"/>
              <exon start="122983" stop="122813"/>
              <exon start="122450" stop="122391"/>
              <exon start="122314" stop="122110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123186" stop="123064"/>
              <exon start="122983" stop="122813"/>
              <exon start="122450" stop="122391"/>
              <exon start="122314" stop="122147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122860" stop="122813"/>
              <exon start="122450" stop="122391"/>
              <exon start="122314" stop="121800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACTACTGGGCAGCTTATGATAGAACTGG : AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG : GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT : GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT : GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG : ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAGAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTCTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</gDNA_template>
            <first_frame> G  L  L  G  S  L  *  *  N  W  :  R  S  A  K  I  C  *  *  K  C  I  *  S  G  S  I  F  V  *  *  R  W  N  G  F  I  H  H  I  G  R  E  R  E  A  N  I  S  I  *  I  Q  I  E  S   : G  H  Q  L  C  C  D  G  P  C  D  T  G  G  V  G  M  L  Y  C  T  Q  T  N  A  *  K  F  T  K  K  I  Y  D  Q  A  D  I  C  K  C   : *  F  L  D  G  Y  *  I  A  L  Y  R  R  I  G  C  F  R  A  T  Y  K  A  V  E  R  P  S  T  H  Q  K  G  E  K  E  N  E  E  N  A  G  *  Y  S  Y  P  C  S  H  N  H  L  N  A  N  P   : C  F  C  S  G  S  C  S  N  A  G  G  N  Q  E  I  C  S  K  F   : D  S  F  S  V  F  F  *  K  A  *  S  N  E  T  I  K  E  N  E  E  E  R  S  P  S  S  K  Q  H  R  Q  P  F  F  *  S  C  R  V  N  A  S  C  G  K  Q  P  Y  Y  H  G  V  G  A  A  *  L  L  *  S  G  K  R  R  C  T  Y  T  L  *  *  P  M  Q  E  T  I  S  K  R  K  Q  K  Q  R  F  F  T  S  T  C  T  H  R  S  C  *  I  *  F  *  R  K  Q  L  C  F  *  S  T  V  F  S  L  G  V  I  *  Q  L  F  I  F  I  H  G  L  K  R  S  F  R  V  P  K  F  L  I  L  A  I  I  *  L  F  F  I  F  V  Q  C  I  L  M  S  S  *  *  H  F  L  F  T  E  E  Q  V  D  V  F  K </first_frame>
            <second_frame>  D  Y  W  A  A  Y  D  R  T  G :   E  V  Q  K  F  A  D  R  S  A  S  D  Q  A  A  S  L  F  S  K  G  G  M  G  S  S  I  I  L  D  V  K  E  K  P  I  Y  Q  Y  R  S  R  L  N  Q  :  A  T  S  S  A  V  M  D  P  V  T  L  V  E  S  E  C  S  T  A  P  K  P  M  H  E  N  L  L  R  K  S  T  T  K  L  I  S  A  S  V  :  D  F  W  M  G  T  E  L  L  F  T  D  V  S  D  A  L  E  L  L  I  K  Q  L  K  G  R  Q  L  T  K  R  E  R  K  K  M  K  R  T  L  G  D  I  A  T  L  V  P  I  T  I  L  M  L  I  P  :  V  S  A  V  G  H  A  A  M  L  A  A  I  K  K  Y  V  P  S  L  :  I  P  S  P  F  S  S  E  R  L  D  L  M  K  Q  L  K  R  T  K  K  K  E  V  Q  A  R  S  S  I  D  N  P  S  S  K  V  V  E  *  M  Q  A  A  G  N  N  L  I  I  M  V  L  V  Q  L  N  F  C  R  V  A  R  G  V  A  H  I  P  Y  N  S  Q  C  K  K  L  S  V  R  G  N  R  N  N  A  F  S  Q  A  H  V  H  T  D  P  A  K  F  S  S  R  E  S  N  F  V  F  D  Q  L  Y  F  L  *  A  S  S  D  N  C  S  Y  L  S  M  V  *  N  E  A  F  E  F  L  N  F  *  F  L  Q  S  S  D  Y  F  S  Y  L  Y  S  V  Y  L  *  A  L  S  S  I  F  F  L  L  R  S  R  W  M  F  L   </second_frame>
            <third_frame>   T  T  G  Q  L  M  I  E  L   : E  K  C  K  N  L  L  I  E  V  H  L  I  R  Q  H  L  C  L  V  K  V  E  W  V  H  P  S  Y  W  T  *  K  R  S  Q  Y  I  N  I  D  P  D  *  I  R :   P  P  A  L  L  *  W  T  L  *  H  W  W  S  R  N  A  L  L  H  P  N  Q  C  M  K  I  Y  *  E  N  L  R  P  S  *  Y  L  Q  V  L :   I  S  G  W  V  L  N  C  S  L  Q  T  Y  R  M  L  *  S  Y  L  *  S  S  *  K  A  V  N  S  P  K  G  R  E  R  K  *  R  E  R  W  V  I  *  L  P  L  F  P  *  P  S  *  C  *  S  L :   F  L  Q  W  V  M  Q  Q  C  W  R  Q  S  R  N  M  F  Q  V  * :   F  L  L  R  F  L  L  K  G  L  I  *  *  N  N  *  R  E  R  R  R  K  K  S  K  L  E  A  A  *  T  T  L  L  L  K  L  *  S  E  C  K  L  R  E  T  T  L  L  S  W  C  W  C  S  L  T  S  V  E  W  Q  E  A  L  H  I  Y  L  I  I  A  N  A  R  N  Y  Q  *  E  E  T  E  T  T  L  F  H  K  H  M  Y  T  Q  I  L  L  N  L  V  L  E  K  A  T  L  F  L  I  N  C  I  F  S  R  R  H  L  T  I  V  H  I  Y  P  W  F  K  T  K  L  S  S  S  *  I  S  N  S  C  N  H  L  T  I  F  H  I  C  T  V  Y  T  Y  E  L  L  V  A  F  S  F  Y  *  G  A  G  G  C  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123671" stop="123643"/>
                    <exon start="123564" stop="123429"/>
                    <exon start="123186" stop="123064"/>
                    <exon start="122983" stop="122813"/>
                    <exon start="122450" stop="122391"/>
                    <exon start="122314" stop="122195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYWAAYDRTGEVQKFADRSASDQAASLFSKGGMGSSIILDVKEKPIYQYRSRLNQATSSAVMDPVTLVESECSTAPKPMHENLLRKSTTKLISASVDFWMGTELLFTDVSDALELLIKQLKGRQLTKRERKKMKRTLGDIATLVPITILMLIPVSAVGHAAMLAAIKKYVPSLIPSPFSSERLDLMKQLKRTKKKEVQARSSIDNPSSKVVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0081D06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122194" stop="121970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQAAGNNLIIMVLVQLNFCRVARGVAHIPYNSQCKKLSVRGNRNNAFSQAHVHTDPAKFSSRESNFVFDQLYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 419 chains have been computed
$ 
$ memory statistics:
$ 3148912 bytes spliced alignments in total
$ 154 spliced alignments have been stored
$ 20447 bytes was the average size of a spliced alignment
$ 39312 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 2312 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 456 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:53:25
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