<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:52:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="+" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="51608" stop="52607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51908" g_stop="52238" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="+" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51908" e_stop="52238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTTATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGATACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTT</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATAT--CAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="-" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="55082" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54782" g_stop="52789" g_length="1994"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1991" r_length="1991" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1994</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54782" e_stop="52789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAGCGGCAAGAGGACGTGGTAGAGGTCGTGGAAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACTACTGCAGAATGAGGGATTGCCACCCGAGCCTA-CCCAGATACGATAAATCAGGTGCTCGCTTATCTTAATGGGTTGTCCGATCAGGGTCAGGCACCTCCAGTATTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAACCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGTCTATAATGACAAATGATCAGCATGAACTTTACAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATAAGTTTCAAGGTAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAAGCACCACCTATGAGTTGGGCGTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGGCATTAAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTCAATGCATATGAGGCTAAGTTTAGTGCACTATCCAGATATGCCACCCAACAGTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGTGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTTAAGCGAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATTGTTCTTACTCTAGAGGATAGGGTTCCGGAGGTTACTCATTTCGACCAATTTAGTCTTCGCTATAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGCACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCAAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCGCGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGCGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCTTTGGTGTGGGAGAGTGACTACAATTCCAATCC-GTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATTGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGATTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGTATTGACCTTGAACCGGGTACTCGCCCCATTTTGATCACTAGTCTTCGGTGGAG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAG-ATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTAT-AC-CCCCTT--ATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="+" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="52764" stop="53688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53063" g_stop="53388" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53063" e_stop="53388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCGCCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGCGGATCCAGGATCAAACAATACAGAATCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="+" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="52975" stop="55081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53275" g_stop="54782" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53275" e_stop="54782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGCGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTTGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTGCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGCGAAGACTAAATTGGTCGAAATGAGTAACCTCCGGAACCCTATCCTCTAGAGTAAGAACAATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTCGCTTAACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAACTCTGACCTCAACACCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACACTGTTGGGTGGCATATCTGGATAGTGCACTAAACTTAGCCTCATATGCATTGACTGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTTAATGCCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGACGCCCAACTCATAGGTGGTGCTTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTACCTTGAAACTTATAACTCACAAACTCAACACCAAACCGTTCTACAATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGTACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGTAAAGTTCATGCTGATCATTTGTCATTATAGACCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCCATACGAGGAGCCATAGTGGTTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAATACTGGAGGTGCCTGACCCTGATCGGACAACCCATTAAGATAAGCGAGCACCTGATTTATCGTATCT-GGGTAGGCTCGGGTGGCAATCCCTCATTCTGCAGTAGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTTCCACGACCTCTACCACGTCCTCTTGCCGCTGCTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAAT-CTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="-" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="55082" stop="53057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54782" g_stop="53357" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54782" e_stop="53357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAGCGGCAAGAGGACGTGGTAGAGGTCGTGGAAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACTACTGCAGAATGAGGGATTGCCACCCGAGCCTA-CCCAGATACGATAAATCAGGTGCTCGCTTATCTTAATGGGTTGTCCGATCAGGGTCAGGCACCTCCAGTATTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAACCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGTCTATAATGACAAATGATCAGCATGAACTTTACAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATAAGTTTCAAGGTAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAAGCACCACCTATGAGTTGGGCGTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGGCATTAAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTCAATGCATATGAGGCTAAGTTTAGTGCACTATCCAGATATGCCACCCAACAGTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGTGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTTAAGCGAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATTGTTCTTACTCTAGAGGATAGGGTTCCGGAGGTTACTCATTTCGACCAATTTAGTCTTCGCTATAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGCACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCAAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAG-ACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="-" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="55063" stop="53713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54764" g_stop="54013" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54764" e_stop="54013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGGTAGAGGTCGTGGAAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACTACTGCAGAATGAGGGATTGCCACCCGAGCCTA-CCCAGATACGATAAATCAGGTGCTCGCTTATCTTAATGGGTTGTCCGATCAGGGTCAGGCACCTCCAGTATTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAACCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGTCTATAATGACAAATGATCAGCATGAACTTTACAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATAAGTTTCAAGGTAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAAGCACCACCTATGAGTTGGGCGTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGGCATTAAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTCAATGCATATGAGGCTAAGTTTAGTGCACTATCCAGATATGCCACCCAACAGTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579412" ref_strand="+" ref_description="SGN-U579412 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>gtcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcgtttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctttatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtggctcgagggggggcccggtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="-" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="56175" stop="54477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55875" g_stop="54767" g_length="1109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1121" r_length="1121" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="-" ref_id="SGN-U579412" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>1109</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55875" e_stop="54767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGAACCGACACATAGATTTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTTCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTATATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGTAGTTT-AAAGTAGATGTTGTTGTGGTGATGACTTCCAGATTTT-GGG----A-A-A---T-AA---T---AGTTATTGAATTGGT-TTTA-TTAATGAGTTTATGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGCTGCCAGTCGCGGCCCGGATTTGGGTCGTGAAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGTGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTATTTCTTTCTTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCAGCGGGACAGGGAGCGACTGAGCCAGCCACTGGCGCTGTAGCTCGAGGAAGAGCAGCGGCAAGA</genome_strand>
        <mrna_strand>GTCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGAATACTCATAG-TTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC----TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGGCTCGAGGGGGGGC-CCGGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591302" ref_strand="+" ref_description="SGN-U591302 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggaaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgttatgggcattgctgcggataatttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0111L05-akKZq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0111L05.2" temp_strand="+" temp_description="C00HBa0111L05.2  CU914754.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111L05 sequenced_by:sanger upload_account_name:uk">
        <position start="79771" stop="80855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80071" g_stop="80555" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0111L05.2" gen_strand="+" ref_id="SGN-U591302" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0111L05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80071" e_stop="80555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAGAAACCAACCCTGCAACTCTTGGCCAGCAGCTGCAAATAATTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTTGAATACCTTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTATCTTAGGAAGTTTGTTTTAGTTATTGAATCTGCTAAGTATGAACGGAAACAATAATCGGAGTATTAGTGGTGTCGTGTTGGTGCTTGGGTTGTTTTGATAAAAGCAAACTGCGGGAAAATTCTGTTTTGGCATTATGTATATATTAAATGTGATTATGAGTATATACTCCAAAGGATTAATACAATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTGTGGTTGCCAAGACGGAACTGTTTTAGGGAGGGGGCTGTTTAATATGATTTTTTGGGTTATATGTGTTATTTGTATTGCTGTGGATAATTTGGGTTG</genome_strand>
        <mrna_strand>GGAAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTATGGGCATTGCTGCGGATAATTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="51908" PGL_stop="52238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51908" e_stop="52238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="51908" e_stop="52238" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51908" stop="52238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTTATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGATACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTT</gDNA_template>
            <first_frame> L  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  Y  Q  V  I  S  *  N  K  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  H  Q  V  H  T  *  G  L  K  P  R  Y  H  T  Y  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  I  R  D  T  P  I  P  *  I  Y  V  S  V  </first_frame>
            <second_frame>  W  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  I  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  I  P  S  N  I  I  K  *  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  L  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  D  T  *  H  S  D  P  L  N  L  C  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0111L05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="55875" PGL_stop="52789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55875" e_stop="52789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="55875" e_stop="52789" e_length="3087"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55875" stop="54767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54782" stop="52789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54782" stop="53357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54764" stop="54013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACGAACCGACACATAGATTTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTTCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTATATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTGTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTATTAATGAGTTTATGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGCTGCCAGTCGCGGCCCGGATTTGGGTCGTGAAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGTGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTATTTCTTTCTTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCAGCGGGACAGGGAGCGACTGAGCCAGCCACTGGCGCTGTAGCTCGAGGAAGAGCAGCGGCAAGAGGACGTGGTAGAGGTCGTGGAAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACTACTGCAGAATGAGGGATTGCCACCCGAGCCTACCCAGATACGATAAATCAGGTGCTCGCTTATCTTAATGGGTTGTCCGATCAGGGTCAGGCACCTCCAGTATTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAACCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGTCTATAATGACAAATGATCAGCATGAACTTTACAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATAAGTTTCAAGGTAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAAGCACCACCTATGAGTTGGGCGTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGGCATTAAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTCAATGCATATGAGGCTAAGTTTAGTGCACTATCCAGATATGCCACCCAACAGTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGTGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTTAAGCGAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATTGTTCTTACTCTAGAGGATAGGGTTCCGGAGGTTACTCATTTCGACCAATTTAGTCTTCGCTATAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGCACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCAAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCGCGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGCGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCTTTGGTGTGGGAGAGTGACTACAATTCCAATCCGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATTGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGATTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGTATTGACCTTGAACCGGGTACTCGCCCCATTTTGATCACTAGTCTTCGGTGGAG</gDNA_template>
            <first_frame> V  T  N  R  H  I  D  L  G  D  Q  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  F  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  L  I  Y  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  K  L  L  E  L  V  V  *  S  R  C  C  C  G  D  D  F  Q  I  L  G  N  N  S  Y  *  I  G  F  I  N  E  F  M  S  S  A  L  L  S  V  D  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  A  A  S  R  G  P  D  L  G  R  E  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  V  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  I  S  F  L  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  Q  R  D  R  E  R  L  S  Q  P  L  A  L  *  L  E  E  E  Q  R  Q  E  D  V  V  E  V  V  E  G  R  P  L  G  E  E  D  E  H  L  V  H  L  I  L  G  R  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  Y  C  R  M  R  D  C  H  P  S  L  P  R  Y  D  K  S  G  A  R  L  S  *  W  V  V  R  S  G  S  G  T  S  S  I  F  C  T  N  T  S  G  F  R  G  T  T  C  N  H  Y  G  S  S  Y  G  C  L  I  R  Y  R  H  V  S  T  S  D  Y  W  V  Y  N  D  K  *  S  A  *  T  L  Q  *  V  L  E  I  E  T  S  S  L  Q  G  Y  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  C  R  T  V  W  C  *  V  C  E  L  *  V  S  R  *  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  S  T  T  Y  E  L  G  V  I  L  *  L  V  Y  G  E  V  Y  P  S  G  I  K  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  S  Q  C  I  *  G  *  V  *  C  T  I  Q  I  C  H  P  T  V  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  S  S  G  Y  G  K  I  L  P  R  S  G  R  F  C  G  R  G  G  R  S  *  A  R  *  I  H  H  G  I  D  I  K  E  V  S  K  G  R  *  V  *  L  F  L  L  *  R  I  G  F  R  R  L  L  I  S  T  N  L  V  F  A  I  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  A  Y  A  *  L  *  R  V  L  W  M  W  G  A  L  D  I  L  G  G  I  V  P  N  R  V  I  D  P  Q  W  L  E  V  E  V  V  M  V  E  A  V  I  L  E  D  V  V  V  K  V  M  V  V  T  K  M  V  E  V  M  G  K  L  E  P  L  H  H  N  M  V  G  A  M  D  R  Q  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  I  L  Y  C  L  I  L  D  P  R  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  R  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  L  W  C  G  R  V  T  T  I  P  I  R  A  Y  H  L  L  S  S  C  *  E  N  C  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  D  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  D  H  *  S  S  V  E </first_frame>
            <second_frame>  S  R  T  D  T  *  I  *  G  I  R  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  S  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  Y  *  F  I  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  V  V  V  M  T  S  R  F  W  E  I  I  V  I  E  L  V  L  L  M  S  L  C  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  L  P  V  A  A  R  I  W  V  V  K  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  *  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  L  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  S  I  N  T  S  T  S  G  T  G  S  D  *  A  S  H  W  R  C  S  S  R  K  S  S  G  K  R  T  W  *  R  S  W  K  D  V  L  *  G  K  R  T  S  T  *  S  I  *  Y  *  G  G  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  T  A  E  *  G  I  A  T  R  A  Y  P  D  T  I  N  Q  V  L  A  Y  L  N  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  T  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  S  I  M  T  N  D  Q  H  E  L  Y  S  K  F  L  K  L  K  P  P  V  F  K  G  T  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  K  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  S  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  A  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  S  A  L  S  R  Y  A  T  Q  Q  C  F  S  P  Q  E  R  I  R  R  F  V  K  V  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  V  E  V  E  G  V  K  R  D  E  F  T  M  A  S  T  S  K  R  F  R  K  G  G  E  F  N  C  S  Y  S  R  G  *  G  S  G  G  Y  S  F  R  P  I  *  S  S  L  *  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  E  H  W  T  Y  *  E  E  L  S  Q  T  E  L  *  T  P  N  G  *  R  *  R  W  S  W  *  R  P  L  F  W  R  T  W  W  S  R  *  W  W  S  P  K  W  S  R  *  W  A  N  W  S  H  Y  I  T  T  W  *  G  Q  W  T  D  K  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  R  V  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  E  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  F  G  V  G  E  *  L  Q  F  Q  S  V  R  I  I  S  F  L  R  A  K  K  I  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  I  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  L  I  T  S  L  R  W   </second_frame>
            <third_frame>   H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  I  D  L  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  T  L  R  I  S  S  L  K  *  M  L  L  W  *  *  L  P  D  F  G  K  *  *  L  L  N  W  F  Y  *  *  V  Y  V  F  R  I  T  F  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  K  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  Y  F  F  L  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  A  S  T  P  A  P  A  G  Q  G  A  T  E  P  A  T  G  A  V  A  R  G  R  A  A  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  L  L  Q  N  E  G  L  P  P  E  P  T  Q  I  R  *  I  R  C  S  L  I  L  M  G  C  P  I  R  V  R  H  L  Q  Y  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  *  I  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  T  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  L  *  N  G  L  V  L  S  L  *  V  I  S  F  K  V  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  K  H  H  L  *  V  G  R  H  S  L  A  C  L  W  R  S  I  S  L  G  H  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  S  M  H  M  R  L  S  L  V  H  Y  P  D  M  P  P  N  S  V  S  V  H  K  S  G  F  V  V  L  *  R  C  *  G  Q  S  C  G  F  Q  P  Y  K  *  R  L  R  Q  N  P  S  K  K  W  *  I  L  W  *  R  W  K  E  L  S  E  M  N  S  P  W  H  R  H  Q  R  G  F  E  R  E  V  S  L  I  V  L  T  L  E  D  R  V  P  E  V  T  H  F  D  Q  F  S  L  R  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  G  L  C  L  T  L  E  S  V  M  D  V  G  S  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  P  P  M  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  R  G  G  Q  G  N  G  G  H  Q  N  G  R  G  D  G  Q  T  G  A  T  T  S  Q  H  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  D  S  V  L  F  D  P  G  S  A  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  A  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  S  D  Y  N  S  N  P  C  V  S  S  P  F  F  V  L  R  K  L  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  F  V  L  T  L  N  R  V  L  A  P  F  *  S  L  V  F  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54620" stop="53799"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIATRAYPDTINQVLAYLNGLSDQGQAPPVFSAPTPPVSEVQHATTMAPRMDASLDIGTFPRLTTGSIMTNDQHELYSKFLKLKPPVFKGTESEDAYDFLVDCHELLHKMGIVERFGVEFVSYKFQGNAKMWWRSHVECQPTEAPPMSWASFSSLFMEKYIPRALRDRKRDEFLSLEQGRMSVNAYEAKFSALSRYATQQCFSPQERIRRFVKVLRSELRISALQVAATAKSFQEVVDFVVEVEGVKRDEFTMASTSKRFRKGGEFNCSYSRG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53746" stop="52976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGVHLRPVNTSLRGLCLTLESVMDVGSTGHIRRNCPKQSYRPPMARGRGGHGRGRYSGGRGGQGNGGHQNGRGDGQTGATTSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMDSVLFDPGSAFSYVSSSFANGLNLHCELLDMPIRVSTPAGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWESDYNSNPCVSSPFFVLRKLLVKGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55602" stop="55318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYILIYILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54987" stop="54790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFRKIPFFLISFLLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHQRDRERLSQPLAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="53063" PGL_stop="54782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53063" e_stop="54782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="53063" e_stop="54782" e_length="1720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53063" stop="53388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53275" stop="54782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCGCCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGCGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTTGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTGCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGCGAAGACTAAATTGGTCGAAATGAGTAACCTCCGGAACCCTATCCTCTAGAGTAAGAACAATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTCGCTTAACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAACTCTGACCTCAACACCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACACTGTTGGGTGGCATATCTGGATAGTGCACTAAACTTAGCCTCATATGCATTGACTGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTTAATGCCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGACGCCCAACTCATAGGTGGTGCTTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTACCTTGAAACTTATAACTCACAAACTCAACACCAAACCGTTCTACAATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGTACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGTAAAGTTCATGCTGATCATTTGTCATTATAGACCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCCATACGAGGAGCCATAGTGGTTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAATACTGGAGGTGCCTGACCCTGATCGGACAACCCATTAAGATAAGCGAGCACCTGATTTATCGTATCTGGGTAGGCTCGGGTGGCAATCCCTCATTCTGCAGTAGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTTCCACGACCTCTACCACGTCCTCTTGCCGCTGCTCTT</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  R  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  I  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  L  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  A  P  H  I  H  N  T  L  *  S  Q  A  *  A  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  I  A  K  T  K  L  V  E  M  S  N  L  R  N  P  I  L  *  S  K  N  N  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  *  L  L  P  P  L  P  Q  N  L  P  L  L  G  R  I  L  P  *  P  L  L  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  T  V  G  W  H  I  W  I  V  H  *  T  *  P  H  M  H  *  L  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  L  M  P  E  G  Y  T  S  P  *  T  S  *  R  M  T  P  N  S  *  V  V  L  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  Y  L  E  T  Y  N  S  Q  T  Q  H  Q  T  V  L  Q  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  Y  P  *  R  L  E  V  S  I  S  R  T  Y  C  K  V  H  A  D  H  L  S  L  *  T  Q  *  S  D  V  E  T  C  L  Y  L  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  I  L  E  V  P  D  P  D  R  T  T  H  *  D  K  R  A  P  D  L  S  Y  L  G  R  L  G  W  Q  S  L  I  L  Q  *  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  R  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  S  T  T  S  T  T  S  S  C  R  C  S  </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  A  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  A  D  P  G  S  N  N  T  E  S  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  *  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  L  P  T  S  I  T  L  S  R  V  K  H  R  P  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  R  R  L  N  W  S  K  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  S  L  N  S  F  H  L  Y  H  K  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  H  L  H  K  T  T  N  P  L  L  W  T  E  T  L  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  *  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  *  C  P  R  D  I  L  L  H  K  Q  A  R  E  *  R  P  T  H  R  W  C  F  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  T  L  K  L  I  T  H  K  L  N  T  K  P  F  Y  N  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  V  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  I  *  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  Y  W  R  C  L  T  L  I  G  Q  P  I  K  I  S  E  H  L  I  Y  R  I  W  V  G  S  G  G  N  P  S  F  C  S  S  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  R  I  Q  D  Q  T  I  Q  N  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  C  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  Y  S  E  D  *  I  G  R  N  E  *  P  P  E  P  Y  P  L  E  *  E  Q  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  R  L  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  T  F  T  K  R  R  I  R  S  C  G  L  K  H  C  W  V  A  Y  L  D  S  A  L  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  N  A  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  L  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  L  P  *  N  L  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  V  P  L  K  T  G  G  F  N  F  K  N  L  L  *  S  S  C  *  S  F  V  I  I  D  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  I  R  G  A  I  V  V  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  V  S  G  *  A  R  V  A  I  P  H  S  A  V  V  H  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  D  *  V  L  V  L  F  P  *  R  T  S  F  H  D  L  Y  H  V  L  L  P  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53815" stop="54204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQLNSPPFRNLFDVDAMVNSSRLTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNTFTKRRIRSCGLKHCWVAYLDSALNLASYALTDILPCSRLKNSSLFLSLNARGIYFSINKLENDAQLIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54507" stop="54782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKYWRCLTLIGQPIKISEHLIYRIWVGSGGNPSFCSSSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="80071" PGL_stop="80555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80071" e_stop="80555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="80071" e_stop="80555" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80071" stop="80555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATGGAGAAACCAACCCTGCAACTCTTGGCCAGCAGCTGCAAATAATTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTTGAATACCTTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTATCTTAGGAAGTTTGTTTTAGTTATTGAATCTGCTAAGTATGAACGGAAACAATAATCGGAGTATTAGTGGTGTCGTGTTGGTGCTTGGGTTGTTTTGATAAAAGCAAACTGCGGGAAAATTCTGTTTTGGCATTATGTATATATTAAATGTGATTATGAGTATATACTCCAAAGGATTAATACAATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTGTGGTTGCCAAGACGGAACTGTTTTAGGGAGGGGGCTGTTTAATATGATTTTTTGGGTTATATGTGTTATTTGTATTGCTGTGGATAATTTGGGTTG</gDNA_template>
            <first_frame> G  N  G  E  T  N  P  A  T  L  G  Q  Q  L  Q  I  I  L  L  V  I  S  L  F  G  V  L  I  L  L  N  T  F  V  N  Y  P  L  I  L  R  R  G  R  D  Q  Y  L  R  K  F  V  L  V  I  E  S  A  K  Y  E  R  K  Q  *  S  E  Y  *  W  C  R  V  G  A  W  V  V  L  I  K  A  N  C  G  K  I  L  F  W  H  Y  V  Y  I  K  C  D  Y  E  Y  I  L  Q  R  I  N  T  I  R  *  M  C  C  E  L  *  N  E  L  S  L  G  V  S  L  L  R  C  C  G  C  Q  D  G  T  V  L  G  R  G  L  F  N  M  I  F  W  V  I  C  V  I  C  I  A  V  D  N  L  G   </first_frame>
            <second_frame>  E  M  E  K  P  T  L  Q  L  L  A  S  S  C  K  *  F  C  *  *  S  P  C  L  V  C  *  F  F  *  I  P  L  L  I  I  H  *  F  *  E  G  G  V  T  S  I  L  G  S  L  F  *  L  L  N  L  L  S  M  N  G  N  N  N  R  S  I  S  G  V  V  L  V  L  G  L  F  *  *  K  Q  T  A  G  K  F  C  F  G  I  M  Y  I  L  N  V  I  M  S  I  Y  S  K  G  L  I  Q  *  G  R  C  V  A  N  Y  K  M  S  Y  R  S  V  C  R  C  F  A  A  V  V  A  K  T  E  L  F  *  G  G  G  C  L  I  *  F  F  G  L  Y  V  L  F  V  L  L  W  I  I  W  V  </second_frame>
            <third_frame>   K  W  R  N  Q  P  C  N  S  W  P  A  A  A  N  N  F  V  S  N  L  L  V  W  C  V  N  S  F  E  Y  L  C  *  L  S  I  N  F  K  K  G  A  *  P  V  S  *  E  V  C  F  S  Y  *  I  C  *  V  *  T  E  T  I  I  G  V  L  V  V  S  C  W  C  L  G  C  F  D  K  S  K  L  R  E  N  S  V  L  A  L  C  I  Y  *  M  *  L  *  V  Y  T  P  K  D  *  Y  N  K  V  D  V  L  R  I  I  K  *  V  I  A  R  C  V  V  A  S  L  L  W  L  P  R  R  N  C  F  R  E  G  A  V  *  Y  D  F  L  G  Y  M  C  Y  L  Y  C  C  G  *  F  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0111L05.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80071" stop="80265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNGETNPATLGQQLQIILLVISLFGVLILLNTFVNYPLILRRGRDQYLRKFVLVIESAKYERKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 19136 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2392 bytes was the average size of a spliced alignment
$ 9056 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2264 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 124 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:52:54
-->
