<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:53:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="4437" stop="3183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4137" g_stop="3483" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4137" e_stop="3483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGG-TCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389711" ref_strand="+" ref_description="SGN-E389711 [TUS-4-A14]">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggtttattgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="9650" stop="10922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9950" g_stop="10622" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E389711" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9950" e_stop="10622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550449" ref_strand="+" ref_description="SGN-E550449 [TUS-5-A26]">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="9650" stop="10916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9950" g_stop="10616" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E550449" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9950" e_stop="10616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTA</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389443" ref_strand="+" ref_description="SGN-E389443 [TUS-4-A14](-)">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtatttttttaagaatttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="9650" stop="10898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9950" g_stop="10598" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E389443" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9950" e_stop="10598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATT</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTT-AAGAATTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550450" ref_strand="+" ref_description="SGN-E550450 [TUS-5-A26](-)">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagaatttttttaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="9650" stop="10891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9950" g_stop="10591" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E550450" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9950" e_stop="10591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATT</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGAATTTTTTT-AAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228378" ref_strand="+" ref_description="SGN-E228378 [cLED-3-N17]">
      <seq>tttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="9651" stop="10916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9951" g_stop="10616" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E228378" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9951" e_stop="10616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTA</genome_strand>
        <mrna_strand>TTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A------------AGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538343" ref_strand="+" ref_description="SGN-E538343 [TUS-57-H16](-)">
      <seq>agtgatccacttaaaagcaaaactcagattatggataatgttccacctggaatccaaagagatcagtggacttcttatgttaattatcgttataaaaaagaaacacaggaagtgtgcaatagaaatgctgaaagtcgaaagaaacaaatcattccacacacaggtggatccaaagctaactctagaagaagggctgaaatgatggctgagaccggtcaaatgcctggacgagcagaactttatcttgctactcataagaatgaagatggagcatatgtaaatgaagcggcaaaaattatctgtgaaaaaattcagcaaaatctgagtcaaagcactgtggatgagtctataatatcgccagatgatgcagttggaaaaattctaggaaaagagcactctggaagggagaactacaataaattgttgaattctcacattcaaatgatggctgctttcaagtcatatatgataatgaaagaaggggcattaccagaacaatttgtggggttatttgctcctactactacaatgccaggtgatgttagtgatagtaatcgtagtgaaccccgctgaagtttcatgaataattgtagatcctttcttgagtttggttgctagtgatctaaagtttaagcaattttttgtagtgatttgaagttcaagcaagtttttgtagtgattgaaagtttcttgtaataatatggttgaagtgaataacatgttccaattaagtttgtagaagtaatagtacactttatgacatgcttttgtggtgaactattgtgttatttcatatagtaatatgcccttttagatttgtctatgttaattaattagttattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="11328" stop="14560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11628" g_stop="11735" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11736" i_stop="11818" i_length="83">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11819" g_stop="11911" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="201" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11912" i_stop="12016" i_length="105">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12017" g_stop="12118" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="303" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12119" i_stop="12565" i_length="447">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12566" g_stop="12667" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="405" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12668" i_stop="12775" i_length="108">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12776" g_stop="12901" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12902" i_stop="13946" i_length="1045">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13947" g_stop="14273" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="856" r_length="325" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E538343" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11628" e_stop="11735"/>
          <exon e_start="11819" e_stop="11911"/>
          <exon e_start="12017" e_stop="12118"/>
          <exon e_start="12566" e_stop="12667"/>
          <exon e_start="12776" e_stop="12901"/>
          <exon e_start="13947" e_stop="14273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATCCACCTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATTCCAAGAGATCAGTGGACTTATTATGTTAATTATCGTTATAAAAAAGAAACACAGCTATATATTTAATTATTTTAAGTAGTATGTGTAGTCATATAATTAATTTCTAATGATTGAATTTCGTGTATCTTTTTTGTTAGGAAATGTGCAACAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATGGTCAAAGATTTTAGTTCTTTTCATTTTATTTAGTTATTAAGATGACTTATTTTGTAATTATGTTTAATTAGTTAAGTTATTCTAAGTTGATTGTTTTGCTTATAGATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGTAGATGGAGCATATATAAATGAAGCAGCAAAAGTTATCTGTGTAAGTTAGTTAATGGGGGAAATAATAGCACTCCAGTTCCTTGGTTGTGTCAAGTCTGTCCCTATTCTATTAACAAGTTAAGTCAAGCAATTTATGTTTAGTCTCTTATTTATTTTAAACCTGAGATTCTCTGTTAATATTTTCGTCATTGCTATTGTTCAAATCAGTTTGATGGTGCCTTGTTTAGTATAGTGTGCTGTCATTTTGAAGTGATTTAAAATCCTTGCTTGAGTAAATGATTTAAAATTATGTCTCACTAATTATCTCTCACTTGGATTGAATATATGCATGTACTTTGCTTGTTTTATGAATGCTAAACTCAGGAGTAAAGGAATTCCTAACTCAGGAATATGTGAATGCACTTTGATTATATTTAGGTAATACATGTTTGTTCTCAATTACTTTTTCAAATTTTGATAAAGTGTTCTGTGTGTGTACTATACTCGGGAAAAAATTCAGCAAACTATGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGGGTAAGGTGTTTGGGATTAGGAGTTGTTCCCACTAGATTTTTTAAACAAGCAAGACCTCGATTCAGCGGTATGAATGCTTCGAGTGTTTCATGTCCATCCAATTGCTAGGAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAAAACAATTTGTAGGGTTATTTGCTCCTACTACTACAATGGTAAATATAACGTTTACATTCTCTCTTCTTCAATGACGTTATTTATATATCAGATTTGTTCGTTTAGTTTACATCAAATGCTAATTGAAAAACAAATGCTAGTGCATCAAATGCTAATTGAAAAACAATTCTACATTTGCATGGCTACTCCTAGTGCATAATGTGCAGCAAATTGGCCTTTACTGTCCAATATTTGTAAATGGAGATGATTTTCCTTTTGAGCTTCTTGTGCAACATTATGTACTCTTATGGAAATACACAACAACCTAATTTATAGTCCATGAAGAGTTTTCTTCTGGCGTCTAAACGACAAGTTCGTATTTACTTTGCATTGTTCTTGTTGTTGACTTCTTTTCCTTAGCATGCCGAGTAACATCAGGTAAATCATAGGATGTGTGTAACCCTTTGGACTTTCTGCTCCTTCTTGTTGGTGCTTTATGCAATTAGATAGCTATGCTTATGTGTGCACCCAATAGTGTGGTCTACTGGTCGATTGGGGGAGGGGGGAGGAAATCATTGGAAATTAGGGTTCAAATGTCAATAGAGACAAGAAACATTAGGTGATTTCTTCTCATTCCCAAAGTCTTGGTAGGCAGAGGTTAGCAAGTACTCGGTGAAATAGTCAAGTTTGCATAAGTTGATCCAGGTACTGTCAGAAGGCAAGAAAGAAAAAAAATAGCTATTGTACGTATGCATATTTGCACATATGCAGATATGTACTACTATTGTTATTTGTTGAGGTCGAATCCGTTTTAGGATTTGTGATTTTGATATCCTTAAATGCAATCATGCTAGGAGTATTTCCGCATAAACTCATCTGAATTGCTTGGTCTTGTTGTACTTGCAAAGACAATTCATATCTCTAAGCAAATTGGATGATTACATCTCCTATTTGTTAATGAGTGGCATTGGTATTTAGTTTCATAGTAGTGAATTTAGTATTGTTGTTCACATGCTTAGTGTTAGCTTACATTATTTCATATTTTATCGGAGTAAAAGTCTTGAGTTTGGATGAAGTCACTTACATGTGTATTTTCCTTTGCAGCCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAACAACTGTAGATCCTTTCTTGAGTTTGGATGCTAGTGATCTAAAGTTTAAACAATTTTTTGTAGTGATTTGAAGTTCAAGTAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAACTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATACTAATATGCCCTTTTATATTTGTCTATGTTAATTAATTAGTATTATTATTTAAATTTGAAT</genome_strand>
        <mrna_strand>AGTGATCCACTTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATCCAAAGAGATCAGTGGACTTCTTATGTTAATTATCGTTATAAAAAAGAAACACAG...................................................................................GAAGTGTGCAATAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATG.........................................................................................................ATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGAAGATGGAGCATATGTAAATGAAGCGGCAAAAATTATCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAATTCAGCAAAATCTGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGG............................................................................................................GAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAGAACAATTTGTGGGGTTATTTGCTCCTACTACTACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAATAATTGTAGATCCTTTCTTGAGTTTGGTTGCTAGTGATCTAAAGTTTAAGCAATTTTTTGTAGTGATTTGAAGTTCAAGCAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAAGTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATAGTAATATGCCCTTTTAGATTTGTCTATGTTAATTAATTAG--TTATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721465" ref_strand="+" ref_description="SGN-E721465 [FC14AA05]">
      <seq>tagggcgattggcggccaatcggccgaattcagaaagctttcttcccctcaatgctgtttatgagatgaagcgcaaacttcgggagttgaagcagacgggaagtattagggcctgtgtgaaattgttatccgctatgaccctccagattccccaactcacggaagatgacatgctgttcaccttcatggacgggctgcagaattgggcgaggaccgagttagagcggcgtcaagtaaaaaccatcgatgaggccatcactcaagctgagaccttgacagatttcaaacatgatcgtttggacaaggcgaagggcaaggaggcaaagggcagtcaagctaaaggtgggggagaccgtggccgaggcagagaaccgtcggcacaacccaagcagcaagacacacccaagtccgatggcagacggttcgaacgccggaagttctcggagaagcggacgcagtccagtagaggagacgggtgctatatatgtggcggaccacacggttacgccaggtgcccagagatgaagagtcttagtgccatcgtccgtgagcggaaggaaaaggaggcacaagacaaggtgaaaccggcagacaccactcaattgggcatggttggaatctgtggtgccatagcaaagcaggctaacaacccgggggatttcagcacacaatatgtggatatctccatcaatgggcaagcagttcgggccatggtagattccggggctgaggctaacatcatgaccaaggcggcggcagagaaattgggactgaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="30504" stop="31860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30804" g_stop="31560" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="780" r_length="755" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E721465" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30804" e_stop="31560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTG</genome_strand>
        <mrna_strand>GAATTC-AGAAAGCTTTCTTCCCC-TCAATGCTGTTTATGAGATGAAGCGCAAACTTCGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTGTGTGAAATTGTTATCCGCTATGACCCTCCAGATTCCCCAACTCACGGAAGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCTGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGCAAGGAGGCAAAGGGCAGTCAAGCTAAAGGTGGGGGAGACCGTGGCCGAGGCAGAGAACCGTCGGCACAACCCAAGCAGCAAGACACACCCAAGTCCGATGGCAGACGGTTCGAACGCCGGAAGTTCTCGGAGAAGCGGACGCAGTCCAGTAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTAGTGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGTGAAACCGGCAGACACCACTCAATTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTAACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAGGCTAACATCATGACCAAGGCGGCGGCAGAGAAATTGGGACTGAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="72562" stop="73893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72862" g_stop="73593" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72862" e_stop="73593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTC-TTGCCAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="72562" stop="78857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72862" g_stop="73518" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72862" e_stop="73518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="72562" stop="78782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72862" g_stop="73443" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72862" e_stop="73443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="72642" stop="78990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72942" g_stop="73651" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72942" e_stop="73651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGT-TA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTA---CA-C--CAACACCAACACCGTCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TT--C-CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="73066" stop="73951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73366" g_stop="73651" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73366" e_stop="73651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACACCAACACCAACACCGTCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="74510" stop="73552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74210" g_stop="73852" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74210" e_stop="73852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="76062" stop="75285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75762" g_stop="75586" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75762" e_stop="75586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78105" stop="78990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78405" g_stop="78690" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78405" e_stop="78690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTATTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCCAGACAAGAAACAACTGATCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="79429" stop="78397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79129" g_stop="78697" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79129" e_stop="78697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78464" stop="79617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78764" g_stop="79317" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78764" e_stop="79317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="79787" stop="78468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79487" g_stop="78768" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79487" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="79784" stop="78521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79484" g_stop="78821" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79484" e_stop="78821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80424" stop="79035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80124" g_stop="79335" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80124" e_stop="79335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80348" stop="79051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80048" g_stop="79351" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80048" e_stop="79351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80504" stop="79141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80204" g_stop="79441" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80204" e_stop="79441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTG-GGGACTGAAACATAATTGGGTGGCATATTTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80422" stop="79289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80122" g_stop="79589" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80122" e_stop="79589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80508" stop="79350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80208" g_stop="79650" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80208" e_stop="79650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80891" stop="79749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80591" g_stop="80049" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80591" e_stop="80049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81118" stop="79757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80818" g_stop="80057" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80818" e_stop="80057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80715" stop="79785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80415" g_stop="80085" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80415" e_stop="80085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81118" stop="79858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80818" g_stop="80158" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80818" e_stop="80158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81187" stop="79929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80887" g_stop="80229" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80887" e_stop="80229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81636" stop="80357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81336" g_stop="80657" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81336" e_stop="80657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81707" stop="80395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81407" g_stop="80695" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81407" e_stop="80695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81707" stop="80512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81407" g_stop="80812" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81407" e_stop="80812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81707" stop="80582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81407" g_stop="80882" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81407" e_stop="80882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81636" stop="80678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81336" g_stop="80978" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81336" e_stop="80978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459515" ref_strand="+" ref_description="SGN-E459515 [cPRO-28-G19]">
      <seq>gtaggattcatttctactatttttctcaaacaaatttatccccaaaatatggatgtttcagctccgcaaacggacacgatgatgccggatgtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaacatatttggtaatatttttgaagttactgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaacattgttgcgatcagagatataattccaccaccacaaagagaagcctttaatgatgtttatattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagaacttaagcctagcaatcttctcttgaatgccaactgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86943" stop="91035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87214" g_stop="87495" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="411" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="549" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90735" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="655" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E459515" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87214" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATT</genome_strand>
        <mrna_strand>GTAGGATTCATTTCTACTATTTTTCTC-AAACAAATTTATCCCCAAAATATGGATGTTTCAGCTCCGCAAACGGACACGATGATGCCGGATGTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAAAGAGAAGCCTTTAATGATGTTTATATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGAACTTAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459676" ref_strand="+" ref_description="SGN-E459676 [cPRO-28-J1]">
      <seq>gtaggattcatttctactatttttctcaaacaaatttatccccaaaatatggatgtttcagctccgcaaacggacacgatgatgccggatgtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcagggtcattcaatacaacatatttggtaatatttttgaagttactgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttctgctttgaattccgagacccatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaacattgatgctaagaagactttgacagagatcaagcttcttccacatatggatcatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86943" stop="88079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87214" g_stop="87495" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87779" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="409" r_length="128" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E459676" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87214" e_stop="87495"/>
          <exon e_start="87652" e_stop="87779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAA</genome_strand>
        <mrna_strand>GTAGGATTCATTTCTACTATTTTTCTC-AAACAAATTTATCCCCAAAATATGGATGTTTCAGCTCCGCAAACGGACACGATGATGCCGGATGTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGGTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCCGAGACCCATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAACATTGATGCTAAGAAGACTTTGACAGAGATCAAGCTTCTTCCACATATGGATCATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624443" ref_strand="+" ref_description="SGN-E624443 [GI|21165522]">
      <seq>attcatttctactatttttctcaaacaaatttatccccaaaatatggatgcttcagctccgcaaatggacacgatgatgccggatgtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaacatatttggtaatatttttgaagttactgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttcggctttgaattcggagacaaatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaacattgttgcgatcagagatataattccaccaccacagagagaagcctttaatgatgtttatattgcatatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgcgattttgggctagctcgtgtcacttctgaaaccgactttatgaccgaatatgtcgtgacaagatggtatcgtccacctgagctgttgttgaattcgtccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggagtttttaaatgagaatgcaaaacgatacatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgcacttgcacatccttacctagcatcgcttcatgatatcagtgacgagcccatttgcatgactccttttaatttcgactttgaacaacatgcccttacagaggaacagatgaaggagctgatttacagggagtctattgcatttaatcctgaataccagcgcatgtgaataatcgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatttatccccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttgtgtatggagagttgtttgatgtatcttatggggtggatcgtttgtatcgtttctgttttatttagactgaaatgaaaaattctggtggacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86943" stop="98396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87219" g_stop="87495" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="406" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="544" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="877" r_length="333" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="1058" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97701" g_stop="98055" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1412" r_length="354" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1465" polyA_stop="1485"/>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E624443" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>1414</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87219" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="98055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGG</genome_strand>
        <mrna_strand>ATTCATTTCTACTATTTTTCTC-AAACAAATTTATCCCCAAAATATGGATGCTTCAGCTCCGCAAATGGACACGATGATGCCGGATGTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCGGCTTTGAATTCGGAGACAAATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAATGATGTTTATATTGCATATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGCGATTTTGGGCTAGCTCGTGTCACTTCTGAAACCGACTTTATGACCGAATATGTCGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCGTCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAGTTTTTAAATGAGAATGCAAAACGATACATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCACTTGCACATCCTTACCTAGCATCGCTTCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAATTTCGACTTTGAACAACATGCCCTTACAGAGGAACAGATGAAGGAGCTGATTTACAGGGAGTCTATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATCGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATTTATCCCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTGTGTATGGAGAGTTGTTTGATGTATC-TTATGGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745945" ref_strand="+" ref_description="SGN-E745945 [GI|47105457]">
      <seq>gggaacaaaattatttccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgggaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatgaaaaattctggtggacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86942" stop="98396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87240" g_stop="87495" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="386" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="524" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="857" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1038" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97701" g_stop="98093" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1431" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1432" polyA_stop="1450"/>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E745945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1431</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87240" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="98093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>GGGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGGGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747510" ref_strand="+" ref_description="SGN-E747510 [GI|30171838]">
      <seq>aacaaaattatttccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttnttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86943" stop="98376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87243" g_stop="87495" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="383" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="521" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="854" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="1035" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97701" g_stop="98076" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1411" r_length="376" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E747510" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87243" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="98076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATG</genome_strand>
        <mrna_strand>AACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTNTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744684" ref_strand="+" ref_description="SGN-E744684 [GI|30962144]">
      <seq>gccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgacctgcatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtggacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggacacttgtttgatgatctttatggggtggattttattttagactgaatgaaattctggtggacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86956" stop="98379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87255" g_stop="87495" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="509" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="842" r_length="333" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="1023" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97701" g_stop="98093" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1412" r_length="389" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1413" polyA_stop="1432"/>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E744684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1416</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87255" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="98093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>GCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGACCTGCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTGGACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGACACTTGTTTGATG-ATCTTTATGGGGTGGATTTTATTTTAGACTG-AATG--AAATTCTGGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469632" ref_strand="+" ref_description="SGN-E469632 [cSTB-12-H2]">
      <seq>cagctccgcaaatggacacgatgatgccggatgtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaacatatttggtaatatttttgaagttactgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaacattgttgcgatcagagatataattccaccaccacagagagaagcctttaatgatgtttatattgcatatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86975" stop="90987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87273" g_stop="87495" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="353" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="491" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90687" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="549" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E469632" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87273" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGC</genome_strand>
        <mrna_strand>CAGCTCCGCAAATGGACACGATGATGCCGGATGTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAATGATGTTTATATTGCATATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411711" ref_strand="+" ref_description="SGN-E411711 [STM-15-K5]">
      <seq>cagctccgcaaatggacacgatgatgccggatgtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaacatatttggtaatatttttgaagttactgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaacattgttgcgatcagagatataattccaccaccacagagagaagcctttaatgatgtttatattgcatatgagcttatggatactgatctccatcaaattattcgctcgaatcatggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86975" stop="90976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87273" g_stop="87495" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="353" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="491" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90676" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="538" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E411711" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87273" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGC</genome_strand>
        <mrna_strand>CAGCTCCGCAAATGGACACGATGATGCCGGATGTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAATGATGTTTATATTGCATATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCATGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406416" ref_strand="+" ref_description="SGN-E406416 [PPI-3-B12]">
      <seq>gtggctgcccctgcggttcagcaaccacctccaccaccgcaaccgctgcccggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaacatatttggtaatatttttgaagttacctgctaagtataaacctcctattatgcctattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaaaatgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaacattgttgcgatcagagatataattccaccaccacaaagagaagcctttaatgatgtttatattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagcctcgtgtcacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87005" stop="91074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87305" g_stop="87495" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="322" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="460" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90774" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="606" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E406416" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87305" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTA-CTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAG-CTCGTGTCACTTCTG</genome_strand>
        <mrna_strand>GTGGCTGCCCCTGCGGTTCAGCAACCACCTCCACCACCGCAACCGCTGCCCGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAACATATTTGGTAATATTTTTGAAGTTACCTGCTAAGTATAAACCTCCTATTATGCCTATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAAAATGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAAAGAGAAGCCTTTAATGATGTTTATATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCCTCGTGTCACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397095" ref_strand="+" ref_description="SGN-E397095 [TUS-44-L6]">
      <seq>tgaagttactgctaattataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatctttttttttctgaggagcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87130" stop="88662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87430" g_stop="87495" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="196" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88385" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="331" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E397095" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87430" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGC</genome_strand>
        <mrna_strand>TGAAGTTACTGCTAATTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCTTTTTTTTTCTGAGGAGCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288241" ref_strand="+" ref_description="SGN-E288241 [cLES-16-G15]">
      <seq>gaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87131" stop="91216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87431" g_stop="87495" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="195" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="333" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90916" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="620" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E288241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87431" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCT</genome_strand>
        <mrna_strand>GAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415815" ref_strand="+" ref_description="SGN-E415815 [STM-22-A21]">
      <seq>ttgcaataaagaaaattgcgaatgcttttgataacaaaattgatgccaagagaactttgcgtgagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccacctcaaagagaagcatttaatgatgtctatattgcatatgagcttatggacactgatctccatcaaattattcggtctaatcaaggattatcagaagaacattgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcatagggacttgaagcctagcaatctcctcttgaatgccaattgtgatttaaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtaccgacctccggagttgttgttaaattcttctgactatactgcagctattgatgtctggtcagttggttgcattttcatggaactgatggacagaaagcctctgtttcctggtagagatcatgtacaccagctacgtctgcttatggagttgattggcaccccgtctgaggctgaaatggagtttttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87383" stop="91266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87684" g_stop="87781" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="236" r_length="138" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="569" r_length="333" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E415815" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87684" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG</genome_strand>
        <mrna_strand>TTGCAATAAAGAAAATTGCGAATGCTTTTGATAACAAAATTGATGCCAAGAGAACTTTGCGTGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCTCAAAGAGAAGCATTTAATGATGTCTATATTGCATATGAGCTTATGGACACTGATCTCCATCAAATTATTCGGTCTAATCAAGGATTATCAGAAGAACATTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCATAGGGACTTGAAGCCTAGCAATCTCCTCTTGAATGCCAATTGTGATTTAAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTACCGACCTCCGGAGTTGTTGTTAAATTCTTCTGACTATACTGCAGCTATTGATGTCTGGTCAGTTGGTTGCATTTTCATGGAACTGATGGACAGAAAGCCTCTGTTTCCTGGTAGAGATCATGTACACCAGCTACGTCTGCTTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437754" ref_strand="+" ref_description="SGN-E437754 [cSTA-4-N14]">
      <seq>ttgcaataaagaaaattgcgaatgcttttgataacaaaattgatgccaagagaactttgcgtgagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccacctcaaagagaagcatttaatgatgtctatattgcatatgagcttatggacactgatctccatcaaattattcggtctaatcaaggattatcagaagaacattgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcatagggacttgaagcctagcaatctcctcttgaatgccaattgtgatttaaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtaccgacctccggagttgttgttaaattcttctgactatactgcagctattgatgtctggtcagttggttgcattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87383" stop="91191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87684" g_stop="87781" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="236" r_length="138" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90630" g_stop="90891" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="498" r_length="262" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E437754" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87684" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCA</genome_strand>
        <mrna_strand>TTGCAATAAAGAAAATTGCGAATGCTTTTGATAACAAAATTGATGCCAAGAGAACTTTGCGTGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCTCAAAGAGAAGCATTTAATGATGTCTATATTGCATATGAGCTTATGGACACTGATCTCCATCAAATTATTCGGTCTAATCAAGGATTATCAGAAGAACATTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCATAGGGACTTGAAGCCTAGCAATCTCCTCTTGAATGCCAATTGTGATTTAAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTACCGACCTCCGGAGTTGTTGTTAAATTCTTCTGACTATACTGCAGCTATTGATGTCTGGTCAGTTGGTTGCATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329971" ref_strand="+" ref_description="SGN-E329971 [cTOD-5-F17]">
      <seq>aagcttcttcgacatatggatcatgaaaatattgttgcgattagagatataattccaccacctcaacgagaagcatttaatgatgtctatattgcatatgagcttatggacactgatctccatcaaattattcgctctaatcagggattatcagaagaacattgccagtatttcttgtatcagatcctccgtggattgaaatacatacattctgcaaatgtgttgcatagggacttgaagcctagcaatctcctcttgaatgccaattgtgatttaaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtaccgacctccagagctgttgttaaattcttctgactatactgcagctattgatgtttggtcagttggttgcattttcatggaactgatggacagaaagcctctgtttcctggtagagatcatgtacaccagctacgtctgcttatggagttgattggcaccccgtctgaggctgaaatggagtttttgaatgagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="87452" stop="91266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87752" g_stop="87781" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="168" r_length="138" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="501" r_length="333" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E329971" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87752" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG</genome_strand>
        <mrna_strand>AAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATTAGAGATATAATTCCACCACCTCAACGAGAAGCATTTAATGATGTCTATATTGCATATGAGCTTATGGACACTGATCTCCATCAAATTATTCGCTCTAATCAGGGATTATCAGAAGAACATTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGATTGAAATACATACATTCTGCAAATGTGTTGCATAGGGACTTGAAGCCTAGCAATCTCCTCTTGAATGCCAATTGTGATTTAAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTACCGACCTCCAGAGCTGTTGTTAAATTCTTCTGACTATACTGCAGCTATTGATGTTTGGTCAGTTGGTTGCATTTTCATGGAACTGATGGACAGAAAGCCTCTGTTTCCTGGTAGAGATCATGTACACCAGCTACGTCTGCTTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304663" ref_strand="+" ref_description="SGN-E304663 [cLEX-11-K1]">
      <seq>tgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="90325" stop="98068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="349" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="530" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97701" g_stop="97768" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="598" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E304663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="97768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATG</genome_strand>
        <mrna_strand>TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574398" ref_strand="+" ref_description="SGN-E574398 [33860]">
      <seq>agatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttgaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgcattttgggctagctcgtgtcacttctgaaaccgactttatgaccgaatatgtcgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatgcagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggagtttttaaatgagaatgcaaaacgatacatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgcgtattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgcacttgcacatccttacctagcatcgcttcatgatatcagtgacgagcccatttgcatgactccttttaatttcgactttgaacaacatgcccttacagaggaacagatgaaggagctgatttacagggagtctattgcatttaatcctgaataccaggcgcatgtgaataatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="90343" stop="98183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90643" g_stop="90962" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="504" r_length="182" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97701" g_stop="97884" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="689" r_length="185" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E574398" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90643" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="97884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTT-AAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTG-ATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGC-TATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCA-GCGCATGTGAATAATTGC</genome_strand>
        <mrna_strand>AGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTGAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGCATTTTGGGCTAGCTCGTGTCACTTCTGAAACCGACTTTATGACCGAATATGTCGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGCAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAGTTTTTAAATGAGAATGCAAAACGATACATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCGTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCACTTGCACATCCTTACCTAGCATCGCTTCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAATTTCGACTTTGAACAACATGCCCTTACAGAGGAACAGATGAAGGAGCTGATTTACAGGGAGTCTATTGCATTTAATCCTGAATACCAGGCGCATGTGAATAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397094" ref_strand="+" ref_description="SGN-E397094 [TUS-44-L6](-)">
      <seq>aaaaaaaaaacgagcccatttgcatgactccttttagtttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtaaagttatggggtggattttattttagactgaaatgaaaaataggggtggacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="97452" stop="98382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97743" g_stop="98093" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E397094" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97743" e_stop="98093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>AAAAAAAAAACGAGCCCATTTGCATGACTCCTTTTAGTTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTAAAGTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATAGGGGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215605" ref_strand="+" ref_description="SGN-E215605 [cLEL-15-G17](-)">
      <seq>cgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcatatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatgaaaaattctggtgggcaagataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="97542" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97842" g_stop="98093" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="270"/>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-E215605" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97842" e_stop="98093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>CGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCATATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477743" ref_strand="+" ref_description="SGN-E477743 [cSTD-1-J19]">
      <seq>cctaaacctataaagtttcctcaagatcttcctttttatgtcacaagtactctctctttgctcttgaaattgttttttttctaaactgggtttttttccgcttttgattttgaacccaaaagtaaaaagaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctggctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttggcaagcctcaaaacttctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaagctctctcagggaaggaatcattccagcagtaaacacagtcggaaaaaggataagaaggacaaagatataaagaaacagagaagcaaaaagagaaagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaggatagagaatccagaaaatcaagatccaagtctaagagaaggaagaaagaaaagagcaccagtcgaggtcgaggttgaagcagtctacaagcgatgatgaagctgatggtcctttgccactttctagattctttggcagcataaaagctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113795" stop="104849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113495" g_stop="113283" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="319" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="461" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.952" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="508" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105374" i_length="5773">
            <donor d_prob="0.990" d_score="0.91"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105373" g_stop="105149" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="731" r_length="223" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E477743" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113495" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105373" e_stop="105149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTG--TTCGTTCTGAACTGGG-GGTTTTCC-CTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCGAGGTTGAAGCAGTCTACAAGCGACGATGAAGCTGATGGTCCTTTGCCGCTTTCTAGATTCTTTGGCAGCATAAAAAGCTAATGC</genome_strand>
        <mrna_strand>CCTAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGTCACAAGTACTCTCTCTTTGCTCTTGAAATTGTTTTTTTTCTAAACTGGGTTTTTTTCCGCTTTTGATTTTGAACCCAAAAGTAAAAAGAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTGGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCAAGCCTCAAAACTTCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAGCTCTCTCAGGGAAGGAATCATTCCAGCAGTAAACACAGTCGGAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATATAAAGAAACAGAGAAGCAAAAAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAGGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAG-AGCACCAGTCGAGGTCGAGGTTGAAGCAGTCTACAAGCGATGATGAAGCTGATGGTCCTTTGCCACTTTCTAGATTCTTTGGCAGCAT-AAAAGCTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707554" ref_strand="+" ref_description="SGN-E707554 [FA33BD05]">
      <seq>caattctatccatctttcaagtccggtaattcccaaattgttgtatttttgcttgtggaaaagaagatctataccaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccaccccaaaacctataaagtttcctcaagatcttcctttttatgccacaactactctctttttgctcttgaaattgttcgttctgaactgggggttttcccttttgattttgaacccaaaagtaaaaaaaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctagctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttagcaagcctcaaaacatctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaaactctctcatggaaggaatcattccagcagtaaacacagccgcaaaaaggataagaaggacaaagatgctaggaaacagagaagcaaaaagagaaagttcatatttgaagatcttcagaatggacttgtgtgattgagtactacatttgaatgacacatgtatattacctaaactgattcagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaagatagagaatccagaanatcaagatccaagtctaagagaaggaagaaagaaaagaagcatcagttgaggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113919" stop="104933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113620" g_stop="113283" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="440" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="582" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="629" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105459" i_length="5688">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105458" g_stop="105233" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="855" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E707554" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113620" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105458" e_stop="105233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCG</genome_strand>
        <mrna_strand>CAATTCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428859" ref_strand="+" ref_description="SGN-E428859 [STM-51-E13]">
      <seq>aatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccacccctaaacctataaagtttcctcaagatcttcctttatatgtcacaagtactctctctttgctcttgaaattgtttttttctaaactgggttttttccgcttttgattttgaacccaaaagtaaaaagaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctggctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttggcaagcctcaaaacttctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgcgggaatacagggctcagctagatgctgaaagggccagcaagctctctcagggaaggaatcattccagcagtaaacacagtcgcaaaaaggataagaaggacaaagatacaaagaaacagagaagcaaaaagagaaagcgttcaaggagatattccgattccagctcttcaagttcgtcatctgagtcttcaagttctgacgatgaagatagagaatccagaaaatcaagatccaagtctaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113845" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113545" g_stop="113283" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="367" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="509" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="556" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105374" i_length="5773">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105373" g_stop="105267" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="663" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E428859" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113545" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105373" e_stop="105267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTG-TTCGTTCTGAACTGGGGGTTTTCC-CTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAG</genome_strand>
        <mrna_strand>AATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCTAAACCTATAAAGTTTCCTCAAGATCTTCCTTTATATGTCACAAGTACTCTCTCTTTGCTCTTGAAATTGTTTTTTTCTAAACTGGGTTTTTTCCGCTTTTGATTTTGAACCCAAAAGTAAAAAGAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTGGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCAAGCCTCAAAACTTCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGCGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAGCTCTCTCAGGGAAGGAATCATTCCAGCAGTAAACACAGTCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATACAAAGAAACAGAGAAGCAAAAAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGTTCGTCATCTGAGTCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321341" ref_strand="+" ref_description="SGN-E321341 [cTOB-23-B20]">
      <seq>ggaaaagaagatctataccaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccaccccaaaacctataaagtttcctcaagatcttcctttttatgccacaactactctctttttgctcttgaaattgttcgttctgaactgggggttttcccttttgattttgaacccaaaagtaaaaaaaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctagctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttagcaagcctcaaaacatctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaaactctctcatggaaggaatcattccagcagtaaacacagccgcaaaaaggataagaaggacaaagatgctaggaaacagagaagcaaaaagagaaagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaagatagagaatccagaaaatcaagatccaagtctaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113864" stop="104968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113564" g_stop="113283" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="384" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="526" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="573" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105374" i_length="5773">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105373" g_stop="105268" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="679" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E321341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113564" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105373" e_stop="105268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGA</genome_strand>
        <mrna_strand>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481269" ref_strand="+" ref_description="SGN-E481269 [cSTD-17-J7]">
      <seq>aaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccacccctaaacctataaagtttcctcaagatcttcctttatatgtcacaagtactctctctttgctcttgaaattgtttttttctaaactgggttttttccgcttttgattttgaacccaaaagtaaaaagaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctggctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttggcaagcctcaaaacttctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgcgggaatacagggctcagctagatgctgaaagggccagcaagctctctcagggaaggaatcattccagcagtaaacacagtcgcaaaaaggataagaaggacaaagatacaaagaaacagagaagcaaaaagagaaagcgttcaaggagatattccgattccagctcttcaagttcgtcatctgagtcttcaagttctgacgatgaagatagagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113845" stop="104995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113546" g_stop="113283" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="368" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="510" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="557" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105374" i_length="5773">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105373" g_stop="105295" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="636" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-E481269" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113546" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105373" e_stop="105295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTG-TTCGTTCTGAACTGGGGGTTTTCC-CTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAAT</genome_strand>
        <mrna_strand>AAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCTAAACCTATAAAGTTTCCTCAAGATCTTCCTTTATATGTCACAAGTACTCTCTCTTTGCTCTTGAAATTGTTTTTTTCTAAACTGGGTTTTTTCCGCTTTTGATTTTGAACCCAAAAGTAAAAAGAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTGGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCAAGCCTCAAAACTTCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGCGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAGCTCTCTCAGGGAAGGAATCATTCCAGCAGTAAACACAGTCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATACAAAGAAACAGAGAAGCAAAAAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGTTCGTCATCTGAGTCTTCAAGTTCTGACGATGAAGATAGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4137" PGL_stop="3483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4137" e_stop="3483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="4137" e_stop="3483" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4137" stop="3483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  R  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  E  *  S  A  *  N  F  H  Y  I  L  K  V  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  P  V  S  G  E  C  H  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  Q  E  E  R  *  V  P  E  P  R  A  R  Q  D  V  C  Y  C  L  *  G  *  I  S  C  T  I  E  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  R  I  E  V  R  F  V  D  P  S  L  T  D  S  </first_frame>
            <second_frame>  D  D  *  P  G  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  L  M  D  A  S  L  E  A  G  T  F  P  R  L  T  T  G  S  I  M  T  S  D  Q  H  E  I  F  T  T  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  Y  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  I  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  K  R  R  D  E  F  L  S  L  E  Q  G  R  M  F  V  T  A  C  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  D  L  *  I  P  A  L  Q  I  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  E  Y  N  M  Q  L  L  W  L  P  S  W  M  P  H  W  K  Q  A  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  M  K  F  S  L  H  S  *  S  *  N  L  Q  S  S  K  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  T  V  L  S  L  *  P  T  S  F  R  G  M  P  *  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  T  R  G  E  M  S  S  *  A  *  S  K  A  G  C  L  L  L  L  V  R  L  N  F  V  H  Y  R  G  M  P  P  S  F  T  S  V  H  K  S  G  F  T  V  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4127" stop="3504"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGLTYLSGLSDQGQTPPVFSAPAPQVPGVQHAAAVAPLMDASLEAGTFPRLTTGSIMTSDQHEIFTTFLKLKPPVFKGVESEDAYDFLVDCHELLHKMDIVERYGVEFVTYQFQGNAIMWWRSYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDKRRDEFLSLEQGRMFVTACEAKFRALSRYATQLYFSPQERIHRFVKGLRSDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9950" PGL_stop="10622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9950" e_stop="10622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="9950" e_stop="10622" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9951" stop="10616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</gDNA_template>
            <first_frame> I  C  H  I  M  G  S  W  K  I  L  L  S  L  T  I  M  E  I  S  G  L  C  F  S  N  A  S  G  L  T  L  L  E  I  E  A  S  R  F  A  I  L  W  E  V  G  R  D  V  W  N  F  N  C  V  N  F  S  K  L  I  H  T  G  D  R  E  D  D  D  P  Y  I  E  A  S  Q  A  N  M  V  F  Y  V  D  D  E  T  D  K  E  W  S  V  A  I  H  L  Q  P  R  D  V  F  D  M  G  Q  V  D  K  E  E  I  F  E  N  E  P  Y  Q  Q  Q  E  F  E  I  F  F  D  V  D  Y  G  N  V  Q  I  S  T  *  E  H  M  P  E  H  T  *  H  A  F  *  F  W  C  K  G  K  T  I  C  I  C  *  S  H  H  S  F  I  K  I  *  T  F  H  V  C  M  D  V  D  T  N  F  L  *  K  S  A  V  L  *  L  D  E  P  V  I  F  T  S  I  A  I  T  V  F  F  *  R  I  S  D  L  S  Y  L  W  F  I  V  </first_frame>
            <second_frame>  F  A  I  L  W  E  V  G  R  Y  Y  *  A  *  L  L  W  K  F  Q  G  C  A  F  Q  M  Q  V  G  *  H  Y  S  R  *  R  Q  A  D  L  P  Y  Y  G  K  L  E  E  M  F  G  T  L  I  V  S  I  F  L  N  *  F  T  P  V  I  V  R  M  M  I  L  T  L  K  H  H  K  Q  I  W  F  S  M  L  M  M  K  Q  I  K  N  G  V  *  L  Y  I  Y  N  Q  E  M  C  L  T  W  D  K  L  I  K  K  R  Y  L  R  M  S  P  T  N  N  K  N  L  K  F  F  S  M  L  I  M  E  M  S  K  S  Q  H  R  S  I  C  L  N  T  H  S  M  L  F  S  F  G  V  K  E  K  L  F  V  Y  A  N  H  I  T  L  L  L  R  F  E  L  F  M  C  V  W  M  W  I  Q  I  S  Y  E  N  L  Q  S  Y  N  W  M  N  Q  *  S  L  Q  V  L  Q  *  Q  Y  F  F  K  E  F  L  I  Y  L  I  F  G  L  L  * </second_frame>
            <third_frame>   L  P  Y  Y  G  K  L  E  D  I  I  E  L  N  Y  Y  G  N  F  R  V  V  L  F  K  C  K  W  A  D  T  T  R  D  R  G  K  Q  I  C  H  I  M  G  S  W  K  R  C  L  E  L  *  L  C  Q  F  F  *  I  D  S  H  R  *  S  *  G  *  *  S  L  H  *  S  I  T  S  K  Y  G  F  L  C  *  *  *  N  R  *  R  M  E  C  S  Y  T  F  T  T  K  R  C  V  *  H  G  T  S  *  *  R  R  D  I  *  E  *  A  L  P  T  T  R  I  *  N  F  F  R  C  *  L  W  K  C  P  N  L  N  I  G  A  Y  A  *  T  H  I  A  C  F  L  V  L  V  *  R  K  N  Y  L  Y  M  L  I  T  S  L  F  Y  *  D  L  N  F  S  C  V  Y  G  C  G  Y  K  F  L  M  K  I  C  S  L  I  T  G  *  T  S  N  L  Y  K  Y  C  N  N  S  I  F  L  K  N  F  *  F  I  L  S  L  V  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9950" stop="10375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICHIMGSWKILLSLTIMEISGLCFSNASGLTLLEIEASRFAILWEVGRDVWNFNCVNFSKLIHTGDREDDDPYIEASQANMVFYVDDETDKEWSVAIHLQPRDVFDMGQVDKEEIFENEPYQQQEFEIFFDVDYGNVQIST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11628" PGL_stop="14273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11628" e_stop="11735"/>
            <exon e_start="11819" e_stop="11911"/>
            <exon e_start="12017" e_stop="12118"/>
            <exon e_start="12566" e_stop="12667"/>
            <exon e_start="12776" e_stop="12901"/>
            <exon e_start="13947" e_stop="14273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.963"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.698" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="0.984"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="11628" e_stop="11735" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11736" i_stop="11818" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="11819" e_stop="11911" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11912" i_stop="12016" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="12017" e_stop="12118" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12119" i_stop="12565" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="12566" e_stop="12667" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.698" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12668" i_stop="12775" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="12776" e_stop="12901" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12902" i_stop="13946" i_length="1045"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="13947" e_stop="14273" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11628" stop="11735"/>
              <exon start="11819" stop="11911"/>
              <exon start="12017" stop="12118"/>
              <exon start="12566" stop="12667"/>
              <exon start="12776" stop="12901"/>
              <exon start="13947" stop="14273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGATCCACCTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATTCCAAGAGATCAGTGGACTTATTATGTTAATTATCGTTATAAAAAAGAAACACAG : GAAATGTGCAACAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATG : ATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGTAGATGGAGCATATATAAATGAAGCAGCAAAAGTTATCTGT : GAAAAAATTCAGCAAACTATGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGG : GAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAAAACAATTTGTAGGGTTATTTGCTCCTACTACTACAATG : CCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAACAACTGTAGATCCTTTCTTGAGTTTGGATGCTAGTGATCTAAAGTTTAAACAATTTTTTGTAGTGATTTGAAGTTCAAGTAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAACTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATACTAATATGCCCTTTTATATTTGTCTATGTTAATTAATTAGTATTATTATTTAAATTTGAAT</gDNA_template>
            <first_frame> S  D  P  P  K  S  K  T  Q  I  M  D  N  V  P  P  G  I  P  R  D  Q  W  T  Y  Y  V  N  Y  R  Y  K  K  E  T  Q  :  E  M  C  N  R  N  A  E  S  R  K  K  Q  I  I  P  H  T  G  G  S  K  A  N  S  R  R  R  A  E  M  :  M  A  E  T  G  Q  M  P  G  R  A  E  L  Y  L  A  T  H  K  N  V  D  G  A  Y  I  N  E  A  A  K  V  I  C  :  E  K  I  Q  Q  T  M  S  Q  S  T  V  D  E  S  I  I  S  P  D  D  A  V  G  K  I  L  G  K  E  H  S  G  R  :  E  N  Y  N  K  L  L  N  S  H  I  Q  M  M  A  A  F  K  S  Y  M  I  M  K  E  G  A  L  P  K  Q  F  V  G  L  F  A  P  T  T  T  M  :  P  G  D  V  S  D  S  N  R  S  E  P  R  *  S  F  M  N  N  C  R  S  F  L  E  F  G  C  *  *  S  K  V  *  T  I  F  C  S  D  L  K  F  K  *  V  F  V  V  I  E  S  F  L  *  *  Y  G  *  S  E  *  H  V  P  I  K  F  V  E  L  I  V  H  F  M  T  C  F  C  G  E  L  L  C  Y  F  I  Y  *  Y  A  L  L  Y  L  S  M  L  I  N  *  Y  Y  Y  L  N  L  N </first_frame>
            <second_frame>  V  I  H  L  K  A  K  L  R  L  W  I  M  F  H  L  E  F  Q  E  I  S  G  L  I  M  L  I  I  V  I  K  K  K  H  R :   K  C  A  T  E  M  L  K  V  E  R  N  K  S  F  H  T  Q  V  D  P  K  L  T  L  E  E  G  L  K  * :   W  L  R  P  V  K  C  L  D  E  Q  N  F  I  L  L  L  I  R  M  *  M  E  H  I  *  M  K  Q  Q  K  L  S  V :   K  K  F  S  K  L  *  V  K  A  L  W  M  S  L  *  Y  R  Q  M  M  Q  L  E  K  F  *  E  K  S  T  L  E  G :   R  T  T  I  N  C  *  I  L  T  F  K  *  W  L  L  S  S  H  I  *  *  *  K  K  G  H  Y  Q  N  N  L  *  G  Y  L  L  L  L  L  Q  C :   Q  V  M  L  V  I  V  I  V  V  N  P  A  E  V  S  *  T  T  V  D  P  F  L  S  L  D  A  S  D  L  K  F  K  Q  F  F  V  V  I  *  S  S  S  K  F  L  *  *  L  K  V  S  C  N  N  M  V  E  V  N  N  M  F  Q  L  S  L  *  N  *  *  Y  T  L  *  H  A  F  V  V  N  Y  C  V  I  S  Y  T  N  M  P  F  Y  I  C  L  C  *  L  I  S  I  I  I  *  I  *   </second_frame>
            <third_frame>   *  S  T  *  K  Q  N  S  D  Y  G  *  C  S  T  W  N  S  K  R  S  V  D  L  L  C  *  L  S  L  *  K  R  N  T   : G  N  V  Q  Q  K  C  *  K  S  K  E  T  N  H  S  T  H  R  W  I  Q  S  *  L  *  K  K  G  *  N   : D  G  *  D  R  S  N  A  W  T  S  R  T  L  S  C  Y  S  *  E  C  R  W  S  I  Y  K  *  S  S  K  S  Y  L   : *  K  N  S  A  N  Y  E  S  K  H  C  G  *  V  Y  N  I  A  R  *  C  S  W  K  N  S  R  K  R  A  L  W  K   : G  E  L  Q  *  I  V  E  F  S  H  S  N  D  G  C  F  Q  V  I  Y  D  N  E  R  R  G  I  T  K  T  I  C  R  V  I  C  S  Y  Y  Y  N   : A  R  *  C  *  *  *  *  S  *  *  T  P  L  K  F  H  E  Q  L  *  I  L  S  *  V  W  M  L  V  I  *  S  L  N  N  F  L  *  *  F  E  V  Q  V  S  F  C  S  D  *  K  F  L  V  I  I  W  L  K  *  I  T  C  S  N  *  V  C  R  T  N  S  T  L  Y  D  M  L  L  W  *  T  I  V  L  F  H  I  L  I  C  P  F  I  F  V  Y  V  N  *  L  V  L  L  F  K  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11628" stop="11735"/>
                    <exon start="11819" stop="11911"/>
                    <exon start="12017" stop="12118"/>
                    <exon start="12566" stop="12667"/>
                    <exon start="12776" stop="12901"/>
                    <exon start="13947" stop="13988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDPPKSKTQIMDNVPPGIPRDQWTYYVNYRYKKETQEMCNRNAESRKKQIIPHTGGSKANSRRRAEMMAETGQMPGRAELYLATHKNVDGAYINEAAKVICEKIQQTMSQSTVDESIISPDDAVGKILGKEHSGRENYNKLLNSHIQMMAAFKSYMIMKEGALPKQFVGLFAPTTTMPGDVSDSNRSEPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30804" PGL_stop="31560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30804" e_stop="31560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="30804" e_stop="31560" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30804" stop="31560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTG</gDNA_template>
            <first_frame> E  F  K  K  A  F  F  P  N  N  A  V  Y  E  M  K  R  K  L  W  E  L  K  Q  T  G  S  I  R  A  Y  V  K  E  F  T  I  L  T  L  Q  I  P  Q  L  T  E  D  D  M  L  F  T  F  M  D  G  L  Q  N  W  A  R  T  E  L  E  R  R  Q  V  K  T  I  D  E  A  I  T  Q  A  E  T  L  T  D  F  K  H  D  R  L  D  K  A  K  G  K  E  A  K  G  S  Q  A  K  G  G  G  D  R  G  R  G  R  E  P  S  A  Q  P  K  Q  Q  D  T  L  K  S  D  D  R  Q  F  E  H  R  K  F  S  E  K  R  T  Q  S  S  R  G  D  G  C  Y  I  C  G  G  P  H  G  Y  A  R  C  P  E  M  K  S  L  D  A  I  V  R  E  R  K  E  K  E  A  Q  D  K  A  K  P  A  D  T  T  Q  L  G  M  V  G  I  C  G  A  I  A  K  Q  A  D  N  P  G  D  F  S  T  Q  Y  V  D  I  S  I  N  G  Q  A  V  R  A  M  V  D  S  G  A  E  A  N  I  M  T  K  A  A  T  E  K  L  R  L  K  I  </first_frame>
            <second_frame>  N  S  R  K  L  S  S  P  T  M  L  F  M  R  *  S  A  N  S  G  S  *  S  R  R  E  V  L  G  P  M  *  K  S  S  Q  F  *  P  S  R  F  P  N  S  R  R  M  T  C  C  S  P  S  W  T  G  C  R  I  G  R  G  P  S  *  S  G  V  K  *  K  P  S  M  R  P  S  L  K  P  R  P  *  Q  I  S  N  M  I  V  W  T  R  R  R  E  R  R  Q  R  A  V  K  L  K  A  G  E  T  V  A  E  A  E  N  H  R  H  N  P  S  S  K  T  H  S  S  P  M  T  D  S  L  N  T  G  N  S  R  R  S  G  R  S  P  A  E  E  T  G  A  I  Y  V  A  D  H  T  V  T  P  G  A  Q  R  *  R  V  L  M  P  S  S  V  S  G  R  K  R  R  H  K  T  R  R  N  R  Q  T  P  L  S  W  A  W  L  E  S  V  V  P  *  Q  S  R  L  T  T  R  G  I  S  A  H  N  M  W  I  S  P  S  M  G  K  Q  F  G  P  W  *  I  P  G  L  K  P  T  *  *  P  R  R  R  Q  R  N  *  D  *  K  L </second_frame>
            <third_frame>   I  Q  E  S  F  L  P  Q  Q  C  C  L  *  D  E  A  Q  T  L  G  V  E  A  D  G  K  Y  *  G  L  C  E  R  V  H  N  F  D  P  P  D  S  P  T  H  G  G  *  H  A  V  H  L  H  G  R  A  A  E  L  G  E  D  R  V  R  A  A  S  S  K  N  H  R  *  G  H  H  S  S  R  D  L  D  R  F  Q  T  *  S  F  G  Q  G  E  G  K  G  G  K  G  Q  S  S  *  R  R  G  R  P  W  P  R  Q  R  T  I  G  T  T  Q  A  A  R  H  T  Q  V  R  *  Q  T  V  *  T  P  E  I  L  G  E  A  D  A  V  Q  Q  R  R  R  V  L  Y  M  W  R  T  T  R  L  R  Q  V  P  R  D  E  E  S  *  C  H  R  P  *  A  E  G  K  G  G  T  R  Q  G  E  T  G  R  H  H  S  V  G  H  G  W  N  L  W  C  H  S  K  A  G  *  Q  P  G  G  F  Q  H  T  I  C  G  Y  L  H  Q  W  A  S  S  S  G  H  G  R  F  R  G  *  S  Q  H  N  D  Q  G  G  D  R  E  I  E  T  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30804" stop="31559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFKKAFFPNNAVYEMKRKLWELKQTGSIRAYVKEFTILTLQIPQLTEDDMLFTFMDGLQNWARTELERRQVKTIDEAITQAETLTDFKHDRLDKAKGKEAKGSQAKGGGDRGRGREPSAQPKQQDTLKSDDRQFEHRKFSEKRTQSSRGDGCYICGGPHGYARCPEMKSLDAIVRERKEKEAQDKAKPADTTQLGMVGICGAIAKQADNPGDFSTQYVDISINGQAVRAMVDSGAEANIMTKAATEKLRLKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="72862" PGL_stop="73651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72862" e_stop="73651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="72862" e_stop="73651" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72862" stop="73593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72862" stop="73518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72862" stop="73443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72942" stop="73651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73366" stop="73651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACACCAACACCAACACCGTCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  T  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  V  F  F  L  L  F  V  E  C  S  K  R  S  V  I  F  N  S  A  V  I  L  A  S  L  R  H  I  G  Y  S  G  *  A  N  A  S  S  L  D  W  V  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  *  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  D  V  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  R  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  D  S  L  L  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  S  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  M  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  I  S  D  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  K  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  M  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  P  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  V  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  L  T  L  F  C  R  W  L  E  L  E  Q  R  L  H  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   D  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  L  L  V  I  C  G  V  Q  Q  T  F  R  H  L  Q  L  S  S  D  S  S  Q  S  S  S  Y  R  I  F  R  V  S  *  C  F  *  L  G  L  G  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  L  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  *  C  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  L  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  *  L  S  F  A  D  G  *  N  *  S  N  D  Y  T  N  T  N  T  V  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73415" stop="73651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFVLSFVLLLESNWYLGDTNWYLTILTLFCRWLELEQRLHQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72983" stop="73189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVFVISDIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLVKSFDRRCSCDDDFQILGNNRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="74210" PGL_stop="73852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74210" e_stop="73852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="74210" e_stop="73852" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74210" stop="73852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  G  K  Q  S  L  A   </first_frame>
            <second_frame>  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  E  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74085" stop="73888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75762" PGL_stop="75586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75762" e_stop="75586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="75762" e_stop="75586" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75762" stop="75586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  R  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  I  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  *  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="78405" PGL_stop="78690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78405" e_stop="78690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="78405" e_stop="78690" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78405" stop="78690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTATTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCCAGACAAGAAACAACTGATCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  R  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  L  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  L  A  R  Q  E  T  T  D  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  Y  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  V  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  C  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  W  P  D  K  K  Q  L  I  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  I  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  S  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78454" stop="78690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFVLSFVLLLESNWYLGDTNWYLTIFTLFCRWLELEQRLRQHQHWPDKKQLIQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="81407" PGL_stop="78697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81407" e_stop="78697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="81407" e_stop="78697" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81407" stop="80695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81407" stop="80812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81407" stop="80882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81336" stop="80657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81336" stop="80978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80887" stop="80229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80818" stop="80057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80818" stop="80158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80591" stop="80049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80415" stop="80085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80208" stop="79650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80204" stop="79441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80124" stop="79335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80122" stop="79589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80048" stop="79351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79487" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79484" stop="78821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79129" stop="78697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  I  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  S  V  V  Y  A  N  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  N  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  I  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  K  E  S  V  T  M  G  P  I  V  S  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  S  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  F  N  I  P  T  S  I  T  L  S  G  V  K  H  R  P  L  *  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  G  T  E  T  *  L  G  G  I  F  G  *  C  V  K  P  S  L  V  R  I  Y  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  L  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  D  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  Y  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  N  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  L  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  Q  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  L  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  Q  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  R  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  A  P  R  L  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  S  I  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  R  A  E  I  R  N  S  D  L  N  P  F  T  N  Q  R  I  R  S  W  G  L  K  H  N  W  V  A  Y  L  D  S  A  *  N  L  A  S  *  E  F  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  C  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  L  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  L  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  F  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  T  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  I  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  V  A  V  L  </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  Q  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  Y  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  V  V  C  S  L  C  K  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  F  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  E  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  K  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  *  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  Q  H  L  G  C  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  Y  P  H  I  H  N  T  L  W  S  Q  A  *  A  S  L  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  P  G  R  I  L  P  L  P  L  S  V  G  P  K  S  A  I  L  T  S  T  P  S  Q  T  S  E  F  A  L  G  D  *  N  I  I  G  W  H  I  W  I  V  R  E  T  *  P  R  K  N  L  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  F  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  *  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  *  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  S  C  G  E  P  *  *  P  H  V  V  P  P  E  L  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  S  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79175" stop="78921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRYWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80680" stop="80435"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLAQRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81143" stop="80904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEIQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79666" stop="79430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICRAEIRNSDLNPFTNQRIRSWGLKHNWVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78920" stop="78699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFNFPILPFSYYLLSRWRSHCPSIRWTRCLSSSPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79976" stop="79767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPSTSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMFNIPTSITLSGVKHRPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80702" stop="80502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGACARFKIDTEVNIPIWWHTRKICREHIQKLANYRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78895" stop="78698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSISPSSPSLITSSVGGGVTALVSDGLGVCPLPLEDVLPRPLPRPLVAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="9"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81211" stop="81014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="78764" PGL_stop="79317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78764" e_stop="79317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="78764" e_stop="79317" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78764" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  S  S  G  G  T  T  C  G  Y  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  Q  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  I  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  V  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  K  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  K  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  Q  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  Y  L  K  L  R  R  Y  N  M  R  L  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  S  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  K  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78765" stop="79316"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGEIEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPVPQAPEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESKDAYDFLVDCHELLHKMGIVKRFGVEFVSYQFQGNAKMWWRSHIECQQTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="87214" PGL_stop="98093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87214" e_stop="87495"/>
            <exon e_start="87652" e_stop="87781"/>
            <exon e_start="88251" e_stop="88388"/>
            <exon e_start="90630" e_stop="90962"/>
            <exon e_start="91457" e_stop="91637"/>
            <exon e_start="97701" e_stop="98093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87214" e_stop="87495" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87652" e_stop="87781" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88251" e_stop="88388" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.955">
            <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90630" e_stop="90962" e_length="333"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91457" e_stop="91637" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.950">
            <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="97701" e_stop="98093" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87214" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87214" stop="87495"/>
              <exon start="87652" stop="87779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87219" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="98055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87240" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="98093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87243" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="98076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87255" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="98093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87273" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87273" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87305" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87430" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87431" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87684" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87684" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87752" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="97768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90643" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="97884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97743" stop="98093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97842" stop="98093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG : TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT : ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG : TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG : TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG : TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</gDNA_template>
            <first_frame> V  G  F  I  C  T  V  F  F  *  T  K  L  F  P  K  Y  G  W  F  R  S  A  N  G  Y  D  D  V  G  C  G  C  T  S  G  S  T  T  T  S  A  V  T  T  A  G  W  N  G  *  Y  S  G  D  V  K  P  W  W  Q  V  H  S  I  Q  Y  F  W  *  Y  F  *  S  Y  C  *  V  *  T  S  Y  N  A  N  W  *  R  C  L  W  N  R  L  :  F  C  F  E  F  G  D  K  *  I  C  S  N  *  E  N  C  *  C  F  *  *  Q  D  *  C  *  E  D  F  E  R  D  Q  A  S  S  T  Y  G  S  *  K   : Y  C  C  D  Q  R  Y  N  S  T  T  T  E  R  S  L  *  R  C  L  H  C  V  *  A  Y  G  Y  *  S  P  S  N  Y  S  L  E  S  G  F  I  *  G  A  L  P   : V  F  L  V  S  D  P  P  W  V  E  I  H  T  F  C  K  C  F  A  Q  R  L  K  A  *  Q  S  S  L  E  C  Q  L  *  F  E  D  M  *  F  W  A  S  S  C  H  F  *  N  *  L  Y  D  R  I  C  C  D  K  M  V  S  S  T  *  A  V  V  E  F  I  R  L  Y  C  S  N  *  C  M  V  S  G  L  H  L  H  G  V  D  G  Q  K  T  P  L  P  W  Q  R  S  C  T  P  A  A  S  Y  Y  G   : V  D  W  H  S  F  R  G  *  N  G  I  F  K  *  E  C  K  T  L  Y  P  T  T  S  S  L  P  S  T  I  I  Y  *  K  V  P  A  C  K  P  S  C  Y  *  S  C  R  E  N  V  D  I  *  S  Q  K  E  N  N  S :   *  R  R  S  C  T  S  L  P  N  I  A  P  *  Y  Q  *  R  A  H  L  H  D  S  F  *  L  R  L  *  A  A  C  A  Y  R  G  T  D  E  G  A  N  L  Q  G  V  D  C  I  *  S  *  I  P  A  H  V  N  N  C  *  Q  I  V  A  G  L  I  Y  M  L  C  V  T  D  N  I  S  P  H  V  Y  M  C  A  F  R  P  G  T  W  M  S  F  L  C  K  H  L  V  M  K  L  T  Y  V  W  R  V  V  *  C  I  F  M  G  W  I  L  F  *  T  E  M  K  N  S  G  G   </first_frame>
            <second_frame>  *  D  S  F  V  L  Y  F  S  E  Q  N  Y  F  Q  N  M  D  G  S  V  P  Q  T  D  T  M  M  S  D  V  A  A  P  P  A  Q  Q  P  P  P  P  S  Q  P  L  A  G  M  D  N  I  P  A  T  L  S  H  G  G  R  F  I  Q  Y  N  I  F  G  N  I  F  E  V  T  A  K  Y  K  P  P  I  M  P  I  G  K  G  A  Y  G  I  V  C :   S  A  L  N  S  E  T  N  E  S  V  A  I  K  K  I  A  N  A  F  D  N  K  I  D  A  K  R  T  L  R  E  I  K  L  L  R  H  M  D  H  E  N  :  I  V  A  I  R  D  I  I  P  P  P  Q  R  E  A  F  N  D  V  Y  I  A  Y  E  L  M  D  T  D  L  H  Q  I  I  R  S  N  Q  G  L  S  E  E  H  C  Q  :  Y  F  L  Y  Q  I  L  R  G  L  K  Y  I  H  S  A  N  V  L  H  R  D  L  K  P  S  N  L  L  L  N  A  N  C  D  L  K  I  C  D  F  G  L  A  R  V  T  S  E  T  D  F  M  T  E  Y  V  V  T  R  W  Y  R  P  P  E  L  L  L  N  S  S  D  Y  T  A  A  I  D  V  W  S  V  G  C  I  F  M  E  L  M  D  R  K  P  L  F  P  G  R  D  H  V  H  Q  L  R  L  I  M  E  :  L  I  G  T  P  S  E  A  E  M  E  F  L  N  E  N  A  K  R  Y  I  R  Q  L  P  L  Y  R  R  Q  S  F  T  E  K  F  P  H  V  N  P  A  A  I  D  L  V  E  K  M  L  T  F  D  P  R  R  R  I  T   : V  E  D  A  L  A  H  P  Y  L  T  S  L  H  D  I  S  D  E  P  I  C  M  T  P  F  S  F  D  F  E  Q  H  A  L  T  E  E  Q  M  K  E  L  I  Y  R  E  S  I  A  F  N  P  E  Y  Q  R  M  *  I  I  A  D  R  L  L  Q  V  *  S  T  C  Y  V  *  L  T  I  Y  L  P  M  Y  I  C  V  H  S  V  R  E  H  G  *  V  S  Y  A  N  T  *  L  *  S  *  L  M  Y  G  E  L  F  D  V  S  L  W  G  G  F  Y  F  R  L  K  *  K  I  L  V  D  </second_frame>
            <third_frame>   R  I  H  L  Y  C  I  F  L  N  K  I  I  S  K  I  W  M  V  P  F  R  K  R  I  R  *  C  R  M  W  L  H  L  R  L  N  N  H  L  R  R  H  N  R  W  L  E  W  I  I  F  R  R  R  *  A  M  V  A  G  S  F  N  T  I  F  L  V  I  F  L  K  L  L  L  S  I  N  L  L  *  C  Q  L  V  K  V  L  M  E  S  F   : V  L  L  *  I  R  R  Q  M  N  L  *  Q  L  R  K  L  L  M  L  L  I  T  R  L  M  L  R  G  L  *  E  R  S  S  F  F  D  I  W  I  M  K  I :   L  L  R  S  E  I  *  F  H  H  H  R  E  K  P  L  T  M  F  T  L  R  M  S  L  W  I  L  I  S  I  K  L  F  A  R  I  R  V  Y  L  R  S  T  A  S :   I  S  C  I  R  S  S  V  G  *  N  T  Y  I  L  Q  M  F  C  T  E  T  *  S  L  A  I  F  S  *  M  P  T  V  I  *  R  Y  V  I  L  G  *  L  V  S  L  L  K  L  T  L  *  P  N  M  L  *  Q  D  G  I  V  H  L  S  C  C  *  I  H  P  T  I  L  Q  Q  L  M  Y  G  Q  W  V  A  S  S  W  S  *  W  T  E  N  P  S  S  L  A  E  I  M  Y  T  S  C  V  L  L  W  S :   *  L  A  L  L  Q  R  L  K  W  N  F  *  M  R  M  Q  N  A  I  S  D  N  F  L  F  T  V  D  N  H  L  L  K  S  S  R  M  *  T  Q  L  L  L  I  L  S  R  K  C  *  H  L  I  P  E  G  E  *  Q  :  L  K  T  L  L  H  I  L  T  *  H  R  S  M  I  S  V  T  S  P  F  A  *  L  L  L  A  S  T  L  S  S  M  R  L  Q  R  N  R  *  R  S  *  F  T  G  S  R  L  H  L  I  L  N  T  S  A  C  E  *  L  L  T  D  C  C  R  F  D  L  H  V  M  C  N  *  Q  Y  I  S  P  C  I  Y  V  C  I  P  S  G  N  M  D  E  F  L  M  Q  T  L  S  Y  E  A  D  L  C  M  E  S  C  L  M  Y  L  Y  G  V  D  F  I  L  D  *  N  E  K  F  W  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87218" stop="87495"/>
                    <exon start="87652" stop="87781"/>
                    <exon start="88251" stop="88388"/>
                    <exon start="90630" stop="90962"/>
                    <exon start="91457" stop="91637"/>
                    <exon start="97701" stop="97876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSFVLYFSEQNYFQNMDGSVPQTDTMMSDVAAPPAQQPPPPSQPLAGMDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNESVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRPPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLIMELIGTPSEAEMEFLNENAKRYIRQLPLYRRQSFTEKFPHVNPAAIDLVEKMLTFDPRRRITVEDALAHPYLTSLHDISDEPICMTPFSFDFEQHALTEEQMKELIYRESIAFNPEYQRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="113620" PGL_stop="105149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113564" e_stop="113283"/>
            <exon e_start="112304" e_stop="112203"/>
            <exon e_start="111467" e_stop="111326"/>
            <exon e_start="111193" e_stop="111147"/>
            <exon e_start="105373" e_stop="105149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113283" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112304" e_stop="112203" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111467" e_stop="111326" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111193" e_stop="111147" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="111146" i_stop="105374" i_length="5773"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="105373" e_stop="105149" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113564" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105373" stop="105268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113546" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105373" stop="105295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113545" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105373" stop="105267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113495" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105373" stop="105149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG : GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG : GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG : ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG : CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCGAGGTTGAAGCAGTCTACAAGCGACGATGAAGCTGATGGTCCTTTGCCGCTTTCTAGATTCTTTGGCAGCATAAAAAGCTAATGC</gDNA_template>
            <first_frame> G  K  E  D  L  Y  Q  S  V  I  I  V  C  F  D  N  P  F  I  S  K  S  T  P  K  P  I  K  F  P  Q  D  L  P  F  Y  A  T  T  T  L  F  L  L  L  K  L  F  V  L  N  W  G  F  S  L  L  I  L  N  P  K  V  K  K  M  G  K  N  Q  A  Y  K  A  M  Q  R  A  R  L  G  S  S  S  G  G  P  D  E  V  D  D  G  M  :  V  D  G  S  F  H  T  P  E  W  H  A  A  R  L  A  S  L  K  T  S  H  T  V  T  W  E  E  F  K  Q  K  Q  K  :  E  E  E  V  R  K  G  E  L  E  A  D  K  D  K  M  M  R  E  Y  R  A  Q  L  D  A  E  R  A  S  K  L  S  H  G  R  N  H  S  S  S  K  H  S  R  K  K   : D  K  K  D  K  D  A  R  K  Q  R  S  K  K  R  K  :  R  S  R  R  Y  S  D  S  S  S  S  S  S  S  S  E  S  S  S  S  D  D  E  D  R  E  S  R  K  S  R  S  K  S  K  R  R  K  K  E  K  K  H  Q  L  R  S  R  L  K  Q  S  T  S  D  D  E  A  D  G  P  L  P  L  S  R  F  F  G  S  I  K  S  *  C </first_frame>
            <second_frame>  E  K  K  I  Y  T  N  L  L  S  S  C  V  L  I  T  L  S  S  Q  S  P  P  Q  N  L  *  S  F  L  K  I  F  L  F  M  P  Q  L  L  S  F  C  S  *  N  C  S  F  *  T  G  G  F  P  F  *  F  *  T  Q  K  *  K  K  W  E  K  I  K  L  T  K  L  C  S  E  Q  G  W  V  L  A  Q  V  D  L  M  K  L  M  M  E  W :   W  M  V  L  F  I  H  Q  S  G  M  R  L  V  *  Q  A  S  K  H  L  I  Q  L  P  G  K  S  S  N  R  N  R  R :   K  K  K  *  E  K  E  S  *  K  Q  T  K  I  K  *  *  G  N  T  G  L  S  *  M  L  K  G  P  A  N  S  L  M  E  G  I  I  P  A  V  N  T  A  A  K  R  :  I  R  R  T  K  M  L  G  N  R  E  A  K  R  E  S :   V  Q  G  D  I  P  I  P  A  L  Q  A  H  H  L  N  L  Q  V  L  T  M  K  I  E  N  P  E  N  Q  D  P  S  L  R  E  G  R  K  K  R  S  I  S  *  G  R  G  *  S  S  L  Q  A  T  M  K  L  M  V  L  C  R  F  L  D  S  L  A  A  *  K  A  N   </second_frame>
            <third_frame>   K  R  R  S  I  P  I  C  Y  H  R  V  F  *  *  P  F  H  L  K  V  H  P  K  T  Y  K  V  S  S  R  S  S  F  L  C  H  N  Y  S  L  F  A  L  E  I  V  R  S  E  L  G  V  F  P  F  D  F  E  P  K  S  K  K  N  G  K  K  S  S  L  Q  S  Y  A  A  S  K  V  G  F  *  L  R  W  T  *  *  S  *  *  W  N   : G  G  W  F  F  S  Y  T  R  V  A  C  G  S  F  S  K  P  Q  N  I  S  Y  S  Y  L  G  R  V  Q  T  E  T  E   : G  R  R  S  E  K  R  R  A  R  S  R  Q  R  *  N  D  E  G  I  Q  G  S  A  R  C  *  K  G  Q  Q  T  L  S  W  K  E  S  F  Q  Q  *  T  Q  P  Q  K  G :   *  E  G  Q  R  C  *  E  T  E  K  Q  K  E  K   : A  F  K  E  I  F  R  F  Q  L  F  K  L  I  I  *  I  F  K  F  *  R  *  R  *  R  I  Q  K  I  K  I  Q  V  *  E  K  E  E  R  K  E  A  S  V  E  V  E  V  E  A  V  Y  K  R  R  *  S  *  W  S  F  A  A  F  *  I  L  W  Q  H  K  K  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113564" stop="113283"/>
                    <exon start="112304" stop="112203"/>
                    <exon start="111467" stop="111326"/>
                    <exon start="111193" stop="111147"/>
                    <exon start="105373" stop="105152"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEDLYQSVIIVCFDNPFISKSTPKPIKFPQDLPFYATTTLFLLLKLFVLNWGFSLLILNPKVKKMGKNQAYKAMQRARLGSSSGGPDEVDDGMVDGSFHTPEWHAARLASLKTSHTVTWEEFKQKQKEEEVRKGELEADKDKMMREYRAQLDAERASKLSHGRNHSSSKHSRKKDKKDKDARKQRSKKRKRSRRYSDSSSSSSSSESSSSDDEDRESRKSRSKSKRRKKEKKHQLRSRLKQSTSDDEADGPLPLSRFFGSIKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113620" e_stop="113283"/>
            <exon e_start="112304" e_stop="112203"/>
            <exon e_start="111467" e_stop="111326"/>
            <exon e_start="111193" e_stop="111147"/>
            <exon e_start="105458" e_stop="105233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="113620" e_stop="113283" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112304" e_stop="112203" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111467" e_stop="111326" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111193" e_stop="111147" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.132">
            <gDNA_intron_boundary i_start="111146" i_stop="105459" i_length="5688"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="105458" e_stop="105233" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113620" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105458" stop="105233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG : GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG : GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG : ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG : TTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCG</gDNA_template>
            <first_frame> K  I  Y  P  S  F  K  S  G  N  S  Q  I  V  V  F  L  L  V  E  K  K  I  Y  T  N  L  L  S  S  C  V  L  I  T  L  S  S  Q  S  P  P  Q  N  L  *  S  F  L  K  I  F  L  F  M  P  Q  L  L  S  F  C  S  *  N  C  S  F  *  T  G  G  F  P  F  *  F  *  T  Q  K  *  K  K  W  E  K  I  K  L  T  K  L  C  S  E  Q  G  W  V  L  A  Q  V  D  L  M  K  L  M  M  E  W :   W  M  V  L  F  I  H  Q  S  G  M  R  L  V  *  Q  A  S  K  H  L  I  Q  L  P  G  K  S  S  N  R  N  R  R :   K  K  K  *  E  K  E  S  *  K  Q  T  K  I  K  *  *  G  N  T  G  L  S  *  M  L  K  G  P  A  N  S  L  M  E  G  I  I  P  A  V  N  T  A  A  K  R  :  I  R  R  T  K  M  L  G  N  R  E  A  K  R  E  S :   S  Y  L  K  I  F  R  M  D  L  C  D  *  V  L  H  L  N  D  T  C  I  L  P  K  L  I  Q  R  S  R  R  Y  S  D  S  S  S  S  S  S  S  S  E  S  S  S  S  D  D  E  D  R  E  S  R  K  S  R  S  K  S  K  R  R  K  K  E  K  K  H  Q  L  R  S </first_frame>
            <second_frame>  K  S  I  H  L  S  S  P  V  I  P  K  L  L  Y  F  C  L  W  K  R  R  S  I  P  I  C  Y  H  R  V  F  *  *  P  F  H  L  K  V  H  P  K  T  Y  K  V  S  S  R  S  S  F  L  C  H  N  Y  S  L  F  A  L  E  I  V  R  S  E  L  G  V  F  P  F  D  F  E  P  K  S  K  K  N  G  K  K  S  S  L  Q  S  Y  A  A  S  K  V  G  F  *  L  R  W  T  *  *  S  *  *  W  N   : G  G  W  F  F  S  Y  T  R  V  A  C  G  S  F  S  K  P  Q  N  I  S  Y  S  Y  L  G  R  V  Q  T  E  T  E   : G  R  R  S  E  K  R  R  A  R  S  R  Q  R  *  N  D  E  G  I  Q  G  S  A  R  C  *  K  G  Q  Q  T  L  S  W  K  E  S  F  Q  Q  *  T  Q  P  Q  K  G :   *  E  G  Q  R  C  *  E  T  E  K  Q  K  E  K   : V  H  I  *  R  S  S  E  W  T  C  V  I  E  Y  Y  I  *  M  T  H  V  Y  Y  L  N  *  F  S  V  Q  G  D  I  P  I  P  A  L  Q  A  H  H  L  N  L  Q  V  L  T  M  K  I  E  N  P  E  N  Q  D  P  S  L  R  E  G  R  K  K  R  S  I  S  *  G   </second_frame>
            <third_frame>   N  L  S  I  F  Q  V  R  *  F  P  N  C  C  I  F  A  C  G  K  E  D  L  Y  Q  S  V  I  I  V  C  F  D  N  P  F  I  S  K  S  T  P  K  P  I  K  F  P  Q  D  L  P  F  Y  A  T  T  T  L  F  L  L  L  K  L  F  V  L  N  W  G  F  S  L  L  I  L  N  P  K  V  K  K  M  G  K  N  Q  A  Y  K  A  M  Q  R  A  R  L  G  S  S  S  G  G  P  D  E  V  D  D  G  M  :  V  D  G  S  F  H  T  P  E  W  H  A  A  R  L  A  S  L  K  T  S  H  T  V  T  W  E  E  F  K  Q  K  Q  K  :  E  E  E  V  R  K  G  E  L  E  A  D  K  D  K  M  M  R  E  Y  R  A  Q  L  D  A  E  R  A  S  K  L  S  H  G  R  N  H  S  S  S  K  H  S  R  K  K   : D  K  K  D  K  D  A  R  K  Q  R  S  K  K  R  K  :  F  I  F  E  D  L  Q  N  G  L  V  *  L  S  T  T  F  E  *  H  M  Y  I  T  *  T  D  S  A  F  K  E  I  F  R  F  Q  L  F  K  L  I  I  *  I  F  K  F  *  R  *  R  *  R  I  Q  K  I  K  I  Q  V  *  E  K  E  E  R  K  E  A  S  V  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113591" stop="113283"/>
                    <exon start="112304" stop="112203"/>
                    <exon start="111467" stop="111326"/>
                    <exon start="111193" stop="111147"/>
                    <exon start="105458" stop="105423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNCCIFACGKEDLYQSVIIVCFDNPFISKSTPKPIKFPQDLPFYATTTLFLLLKLFVLNWGFSLLILNPKVKKMGKNQAYKAMQRARLGSSSGGPDEVDDGMVDGSFHTPEWHAARLASLKTSHTVTWEEFKQKQKEEEVRKGELEADKDKMMREYRAQLDAERASKLSHGRNHSSSKHSRKKDKKDKDARKQRSKKRKFIFEDLQNGLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 247 chains have been computed
$ 
$ memory statistics:
$ 159952 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2757 bytes was the average size of a spliced alignment
$ 19384 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1615 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 281 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:56:34
-->
