<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:56:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="4438" stop="3169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4138" g_stop="3469" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4138" e_stop="3469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAACCAGG-TCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCTGC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592509" ref_strand="+" ref_description="SGN-U592509 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=1e-25) Polyprotein,; ">
      <seq>aggagcagtggcgagaggccgtggtagaggtcgcaggaggacgtcctctagaggtagaggacaaacacctggtcttgctagtaatagggcggtgactcctccaccgactgaagaggtagtaagggtgaggaaggggcaaaatgaacaagtgcaagatgaggaattaccaccccaacctaccccagagatgatcaaccaggtacttacttatcttagcgaattatctgatcggggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctccccgcatggatgcctcattggaagtaggcacgtttcctcgattgactacngggtctataatgacgagtgatcagcatgaacttttcactaaattcttaaagttgaaaccttcagtcttcaagggtgctgaatctgaggatgcctatgattttctggttgattttcatgaactgctacataagatggacatagtgtaacgattcggtgttgagtttgtgacctaccagtttcaggggaatgccaaaatatggtggcggtcgtatgttgagtgtcagccagcacaggcaccacctatgacctgngcatcattctctaacttatntatggagaagtatataccccagactttgagggacaaganganagatgagtttctgagcctagagcaaggaaggatgtctgttgccgcttatgagnacaaatttcgtgcgttatccaggtatgccacccagctttgcttcattccacaaganaggattcnncgcttngtgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="4625" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4325" g_stop="3522" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U592509" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4325" e_stop="3522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAGTGGCAAGAGGCCGTGGTAGAGGTCGCAGGAGAACGCCCTCTAGGGGTAGAGGACAAACACCTGGTTCAGCTAGTAATAGGGCGATGACTCCTCTAACGACTGATGATGTAGTGAGAGAGGGTAAAGAAGGGG-AAAACGAGCAGGTTCAAGATGAGGAATTACCACCCCAGCCTACCCCAGAGATGATTAACCAGGT-CTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGA</genome_strand>
        <mrna_strand>AGGAGCAGTGGCGAGAGGCCGTGGTAGAGGTCGCAGGAGGACGTCCTCTAGAGGTAGAGGACAAACACCTGGTCTTGCTAGTAATAGGGCGGTGACTCCTCCACCGACTGAAGAGGTAGT---A-AGGGTGAGGAAGGGGCAAAATGAACAAGTGCAAGATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAACCAGGTACTTACTTATCTTAGCGAATTATCTGATCGGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACNGGGTCTATAATGACGAGTGATCAGCATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTTCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTTTCATGAACTGCTACATAAGATGGACATAGTGTAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATATGGTGGCGGTCGTATGTTGAGTGTCAGCCAGCACAGGCACCACCTATGACCTGNGCATCATTCTCTAACTTATNTATGGAGAAGTATATACCCCAGACTTTGAGGGACAAGANGANAGATGAGTTTCTGAGCCTAGAGCAAGGAAGGATGTCTGTTGCCGCTTATGAGNACAAATTTCGTGCGTTATCCAGGTATGCCACCCAGCTTTGCTTCATTCCACAAGANAGGATTCNNCGCTTNGTGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602274" ref_strand="+" ref_description="SGN-U602274 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147826806|emb|CAN63950.1| (e_value=8e-33) hypothetical; ">
      <seq>tagggcgattggcggccaatcggccgaattcagaaagctttcttcccctcaatgctgtttatgagatgaagcgcaaacttcgggagttgaagcagacgggaagtattagggcctgtgtgaaattgttatccgctatgaccctccagattccccaactcacggaagatgacatgctgttcaccttcatggacgggctgcagaattgggcgaggaccgagttagagcggcgtcaagtaaaaaccatcgatgaggccatcactcaagctgagaccttgacagatttcaaacatgatcgtttggacaaggcgaagggcaaggaggcaaagggcagtcaagctaaaggtgggggagaccgtggccgaggcagagaaccgtcggcacaacccaagcagcaagacacacccaagtccgatggcagacggttcgaacgccggaagttctcggagaagcggacgcagtccagtagaggagacgggtgctatatatgtggcggaccacacggttacgccaggtgcccagagatgaagagtcttagtgccatcgtccgtgagcggaaggaaaaggaggcacaagacaaggtgaaaccggcagacaccactcaattgggcatggttggaatctgtggtgccatagcaaagcaggctaacaacccgggggatttcagcacacaatatgtggatatctccatcaatgggcaagcagttcgggccatggtagattccggggctgaggctaacatcatgaccaaggcggcggcagagaaattgggactgaaaattgttccaagtaacaatcgcctcaagaaagtcaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="30504" stop="31896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30804" g_stop="31596" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="816" r_length="791" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U602274" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30804" e_stop="31596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTGTTCCAAGCAACAATCGCCTCAAGACGGTCAACGCCC</genome_strand>
        <mrna_strand>GAATTC-AGAAAGCTTTCTTCCCC-TCAATGCTGTTTATGAGATGAAGCGCAAACTTCGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTGTGTGAAATTGTTATCCGCTATGACCCTCCAGATTCCCCAACTCACGGAAGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCTGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGCAAGGAGGCAAAGGGCAGTCAAGCTAAAGGTGGGGGAGACCGTGGCCGAGGCAGAGAACCGTCGGCACAACCCAAGCAGCAAGACACACCCAAGTCCGATGGCAGACGGTTCGAACGCCGGAAGTTCTCGGAGAAGCGGACGCAGTCCAGTAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTAGTGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGTGAAACCGGCAGACACCACTCAATTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTAACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAGGCTAACATCATGACCAAGGCGGCGGCAGAGAAATTGGGACTGAAAATTGTTCCAAGTAACAATCGCCTCAAGAAAGTCAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="71775" stop="72520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72075" g_stop="72220" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72075" e_stop="72220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTAAGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAAAGAAACTCTAATATACATTATTATTGATGATGCCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579412" ref_strand="-" ref_description="SGN-U579412 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>gggtaccgggccccccctcgagccacagccccagtggctggctcagtcgcaccctgtcccgccggtgctggtgttgatgctggcgtagtcgttgctctagttctaaccatctgcgaaatagagtgaagatggtcagataccaatttgtatcacctagataccaattggacccaagtaatagcacgaaagaagaaagaatggaattttccaaaagtcttatagcctctcaaggaaaagtaaaggcatccccctaccgttccttaagactctactagactcgttcttgtgtgatgagaccaacgaacctaatgctctgataccaagtttgtcacgaccaaaaccgggttgcgactggcacccacacttaccctcctatgtgagcgaaccaaccaatctaaccttaacatttcaatataatatcaacagaaagtaatgtggaagacttaaactcattaaataaagaccaattcattaacttctaaaattcaacatctattattccccaaaatctggaagtcatcatcacaagaacatctacgatcaaacgactaaactatgagtattctaaaagctaaaaatacataagaagctagtccatgccggaagttcaaggcatcgagacttgaagaagaagatccagtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaggacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78997" stop="72168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78647" g_stop="78528" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="191" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78527" i_stop="73484" i_length="5044">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73483" g_stop="72612" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="1066" r_length="875" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72611" i_stop="72524" i_length="88">
            <donor d_prob="0.083" d_score="0.73"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72523" g_stop="72468" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1067" r_stop="1121" r_length="55" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U579412" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>1048</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579412" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78647" e_stop="78528"/>
          <exon e_start="73483" e_stop="72612"/>
          <exon e_start="72523" e_stop="72468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAACGAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAATACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGATTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGCCATCATCACAAGAACATCAACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGATGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTGCACTCCACAAATAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAACCATGGGTACTGAGTAGATATCATCGGTCAACTCAAAATAGAGAACAGTATATATCAAGTAATATCATAAATCAACTATAAAACTCAACATGTAGCAACAACAGGTACTATAATCATCAATAAGTACCATCAAGTTCATATATGAGGGCTCAAGCCTCAATGCCATACTCATTTGGGAATTAAGTTTATTAAGTTGAGTATATTATCATCTTTCAAGATTCATTATCTTTCTTCCTCTTGTTTCGGTACGTGACACTCCGATCCCCTACTGCTATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTATGTGTTTCGGTACGTGACACTCCGATCCCCTATATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTATGTGTGTCGGTACGTGACACTCCGATCCCCTATACGTGTCGGTACGTGACACTCCGATCCCCTACATGTGTCGATACGTGACACTCTGATCCCCTAATTCTACGTGTCAGAACGTGACACTCCGATCCACTAATACTATGTGTCGGAATGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCCGATCCACTAATATCATTCTGTAAATCTTCAAGCCTTCTCTATACCAAGGCATCATCAATAATAATGTATATTAGAGTTTCTTTTCAAGATTTGGGATTCAATACTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCATGCAAACATAACATTAAGCATATAGTAGGGTTTACAATACTACAAATACATATCATTCACTATTAAGAGTTTACTTAGGAAAGCATGAAACCATAACCTACCTCCACCGAAGATTTGTGATTAAGCAAGAAATTCCCAAGGCTTTTGTTCCTTCTTCTCGTTCGATCCTCTCTCAATTCGTTTCTCTTTCCCTCTCTTTGTTCTTTCTAATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAATATATAATTAAGAATGAAAGATGGTAATAATGACCCACTAATTAAATTAAGGTTACCTATTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGCAAAGAAATCCGACCCAGACTGGGATTTGCGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGCCGTCGCAAGGGTCAGAGACTCAGTTTCCACTGAATTATCTGTGACGGTCCGTCACGCCTGTGACGGTCTGTCCTGCTATTCCGTTATGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGTTCCATCGTTGGGTTCGTCGCTTCAGTCTGTTTTTCCAGAAATAAAATCTGCTGCTCGAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCTATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGATGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCTATCTAGAATAGCAACAGGCTCATCCTCATAAGACAAGTTCTCATCAAGCAAAACTGAATTCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGACACCTCTCCTACTCGCTTAAGTACTTCAAATGGTCCAATGTACCTTGGACTTAGTTTACCCCTTTTTCCAAACCGCATCACCCTTTCATTGGTGAAACTTTCAATAAGACTTGTTCACCCTCCATGAACTCTAAGTTTCTAACCTTTCGATCTGTATATTCTTTTTGTCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGACTTCACTTTCTCTATCGAATCCCTCAAAAGATCAGTGCCCCAAGGTCTAACCTCGAACGCATCAAACCAACCAATGGGAGACCTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTAAAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAATAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTGGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCACTTCCATTAAGGAATGGGCATTCTCTGAAGTGTTTTTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAAAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAACCACCGACGCGGGGTACACATACCCTTCCCTTGATCCTCAAAACACCTTCCTCATCAATTTGTGCTTCCTTAGCCTCTCCTCGCAATACCTTATCTTGAATTCTGCGCAGTTCCTCATCATCAGACTGTCTTCCCTTAATCTTGTCAAGAAAGGAAGATCTGGCCTCCACAGAAGCCAACAACCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAGTGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCTATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTTGCCTTCCACGGATGATACAAGATAGTGATATCGTAGTCCTTTAGTAACTCCATCCATCTCCTTTGTCTTAAGTTCAAATCTTTCTGGGTAAAGACATACTGAAGGCTACGATGATCCGTGTAGACCTCACACTTTACCCCATATAGATAGTGTCTCCATTGTTTTAATGCAAACACTACCGCAGCCAATTCCAAGTCGTGGGTCGGATAGTTACGTTCATGCACCTTTAATTGCCTTGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACTGCACCCAAACCAGAATAGGATGCATCACAATAAACAATGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAGGTGCGGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCCTCACATTCGTCCGACCATACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAGTTGGGAAGCAATAGAAGAGAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTTGCTGTTCTTCCTCGAGCCACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGACGGTGTTGGTGTTGGTGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTCAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAACGAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATT-AAT-AACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTGCACTCCACAAAT-AACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAACCACGGGTACTGAGTAGATATCATCGGTCAACTCAAAATAGAGAACAGTATATAT--CAAGTAATATCAT-AAATCAACTATAAAACTCAACATGTAGCAACAACAGGTACTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAATGCCATACTCATTTGGGAATTAAGTTTATTAAGTTGAGTATATTATCATCTTTCAAGATTCATTATCTTTCTTCCTCTTGTTTCGGTACGTGACACTCCGATCCCCTACTACT-ATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCACTATGTGTGTCGGTACGTGACACTCCGATCCCCTATATGTGTCGGTACGTGACACTCTGATCCCCTAATTCTACGTGTCGGTTCGTGAC</genome_strand>
        <mrna_strand>TGTTGATGCTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAATGGAATTTTCCAAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCATCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGA-CCAAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCT-AACCTTAACATTTCAATATAATATCAACAGAAAGTAATGTGGAAGACTTAAACTCATTAAATAAAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAACGACTAAACTATGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCGAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGT-AGTAAGACTGGCTTGAATTACTGTTGAGTTGAGGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTAT-ATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCC........................................................................................TCT-TGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="75847" stop="74755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75547" g_stop="75055" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75547" e_stop="75055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTAAAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAATAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTGGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCACTTCCATTAAGGAATGGGCATTCTCTGAAGTGTTTTTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAAAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAACCACCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="76062" stop="75285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75762" g_stop="75586" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75762" e_stop="75586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="76814" stop="77559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77114" g_stop="77259" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77114" e_stop="77259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGTTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAAAGAAACTCTAATATACATTATTATTGATGATGCCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78398" stop="81188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78698" g_stop="80889" g_length="2192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78698" e_stop="80889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAGTCCCCAAGAGCGAATTCGCTGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCCTACAGATAGCGGCAACGGCAAAATCCTTCCAGGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCAGAGAGGCCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGATATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGCTGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCTTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTATAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTTGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTTCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAAGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATTTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80505" stop="78399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80205" g_stop="78698" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80205" e_stop="78698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78398" stop="80423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78698" g_stop="80123" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78698" e_stop="80123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAGTCCCCAAGAGCGAATTCGCTGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCCTACAGATAGCGGCAACGGCAAAATCCTTCCAGGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCAGAGAGGCCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGATATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGCTGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCTTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78416" stop="79768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78716" g_stop="79468" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78716" e_stop="79468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78429" stop="81579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78728" g_stop="79600" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79601" i_stop="80715" i_length="1115">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80716" g_stop="81279" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78728" e_stop="79600"/>
          <exon e_start="80716" e_stop="81279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAGTCCCCAAGAGCGAATTCGCTGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCCTACAGATAGCGGCAACGGCAAAATCCTTCCAGGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCAGAGAGGCCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGATATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGCTGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCTTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTATAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTTGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTTCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAAGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATTTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAATAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="78463" stop="79617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78762" g_stop="79317" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78762" e_stop="79317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="+" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ctgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgctataggntcaagaactcatcccttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81099" stop="79063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80836" g_stop="80306" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80305" i_stop="79562" i_length="744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79561" g_stop="79363" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="723" r_length="199" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U592109" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80836" e_stop="80306"/>
          <exon e_start="79561" e_stop="79363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCC</genome_strand>
        <mrna_strand>CTGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-TT-ACA-ACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGCTATAGGNTCAAGAACTCATCCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80716" stop="79792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80417" g_stop="80092" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80417" e_stop="80092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592954" ref_strand="+" ref_description="SGN-U592954 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195426549|ref|XP_002061389.1| (e_value=0) GK20893; (*SWP) sp|Q39WP5|NHAA_GEOMG (e_value=0) Na(+)/H(+) antiporter nhaA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nhaA; ">
      <seq>ggaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="80892" stop="79799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80592" g_stop="80099" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U592954" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80592" e_stop="80099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATG</genome_strand>
        <mrna_strand>GGAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="81710" stop="80296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81407" g_stop="80596" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="865" r_length="812" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81407" e_stop="80596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576603" ref_strand="+" ref_description="SGN-U576603 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|30171839|gb|AAP20419.1| (e_value=0) mitogen-activated protein kinase 1 [Lycopersicon esculentum]; (*ATH) AT2G43790.1 (e_value=0)  Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK6), identical to mitogen-activated protein kinase homolog 6 (AtMPK6)(Arabidopsis thaliana) SWISS-PROT:Q39026; PMID:12119167 | chr2:18145439-18148065 FORWARD | Aliases: F1... ; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=0) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4; ">
      <seq>tgaggattcatttgtactgtatttttctgaacaaaattatttccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatgaaaaattctggtggacaatatctgtgtcggatatttctgttgtcattgatattcttatttcattgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="+" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="86914" stop="98443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87213" g_stop="87495" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87652" g_stop="87781" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="412" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="550" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90630" g_stop="90962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="883" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91457" g_stop="91637" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="1064" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97701" g_stop="98144" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1508" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="+" ref_id="SGN-U576603" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1509</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87213" e_stop="87495"/>
          <exon e_start="87652" e_stop="87781"/>
          <exon e_start="88251" e_stop="88388"/>
          <exon e_start="90630" e_stop="90962"/>
          <exon e_start="91457" e_stop="91637"/>
          <exon e_start="97701" e_stop="98144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACAATATCTGTGTCGGATATTTCTGTTGTCATTGATATTCTTATTTCATTGCCA</genome_strand>
        <mrna_strand>TG-AGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACAATATCTGTGTCGGATATTTCTGTTGTCATTGATATTCTTATTTCATTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567387" ref_strand="+" ref_description="SGN-U567387 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157353786|emb|CAO46318.1| (e_value=4e-34) unnamed; (*ATH) AT3G59800.1 (e_value=2e-33) | Symbol: None | expressed protein | chr3:22105454-22107151 REVERSE | Aliases: F24G16.70; ">
      <seq>caattctatccatctttcaagtccggtaattcccaaattgttgtatttttgcttgtggaaaagaagatctataccaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccaccccaaaacctataaagtttcctcaagatcttcctttttatgccacaactactctctttttgctcttgaaattgttcgttctgaactgggggttttcccttttgattttgaacccaaaagtaaaaaaaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctagctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttagcaagcctcaaaacatctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaaactctctcatggaaggaatcattccagcagtaaacacagccgcaaaaaggataagaaggacaaagatgcaaggaaacagagaagcaaaaagagaaagttcatatttgaagatcttcagaatggacttgtgtgattgagtactacatttgaatgacacatgtatattacctaaactgattcagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaagatagagaatccagaanatcaagatccaagtctaagagaaggaagaaagaaaagaagcatcagttgaggtcgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0141H05-T59wy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0141H05.1" temp_strand="-" temp_description="C00HBa0141H05.1  AC218455.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0141H05">
        <position start="113919" stop="104929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113620" g_stop="113283" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112304" g_stop="112203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="440" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111467" g_stop="111326" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="582" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111193" g_stop="111147" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="629" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111146" i_stop="105459" i_length="5688">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105458" g_stop="105229" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="859" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0141H05.1" gen_strand="-" ref_id="SGN-U567387" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113620" e_stop="113283"/>
          <exon e_start="112304" e_stop="112203"/>
          <exon e_start="111467" e_stop="111326"/>
          <exon e_start="111193" e_stop="111147"/>
          <exon e_start="105458" e_stop="105229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCGAGGT</genome_strand>
        <mrna_strand>CAATTCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATGCAAGGAAACAGAGAAGCAAAAAGAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAANATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4325" PGL_stop="3469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4325" e_stop="3469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="4325" e_stop="3469" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4325" stop="3522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4138" stop="3469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGAAGTGGCAAGAGGCCGTGGTAGAGGTCGCAGGAGAACGCCCTCTAGGGGTAGAGGACAAACACCTGGTTCAGCTAGTAATAGGGCGATGACTCCTCTAACGACTGATGATGTAGTGAGAGAGGGTAAAGAAGGGGAAAACGAGCAGGTTCAAGATGAGGAATTACCACCCCAGCCTACCCCAGAGATGATTAACCAGGTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCTGCTGCAGCAAAATC</gDNA_template>
            <first_frame> R  R  S  G  K  R  P  W  *  R  S  Q  E  N  A  L  *  G  *  R  T  N  T  W  F  S  *  *  *  G  D  D  S  S  N  D  *  *  C  S  E  R  G  *  R  R  G  K  R  A  G  S  R  *  G  I  T  T  P  A  Y  P  R  D  D  *  P  G  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  L  M  D  A  S  L  E  A  G  T  F  P  R  L  T  T  G  S  I  M  T  S  D  Q  H  E  I  F  T  T  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  Y  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  I  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  K  R  R  D  E  F  L  S  L  E  Q  G  R  M  F  V  T  A  C  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  D  L  *  I  P  A  L  Q  I  A  A  A  A  K   </first_frame>
            <second_frame>  G  E  V  A  R  G  R  G  R  G  R  R  R  T  P  S  R  G  R  G  Q  T  P  G  S  A  S  N  R  A  M  T  P  L  T  T  D  D  V  V  R  E  G  K  E  G  E  N  E  Q  V  Q  D  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  E  Y  N  M  Q  L  L  W  L  P  S  W  M  P  H  W  K  Q  A  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  M  K  F  S  L  H  S  *  S  *  N  L  Q  S  S  K  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  T  V  L  S  L  *  P  T  S  F  R  G  M  P  *  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  T  R  G  E  M  S  S  *  A  *  S  K  A  G  C  L  L  L  L  V  R  L  N  F  V  H  Y  R  G  M  P  P  S  F  T  S  V  H  K  S  G  F  T  V  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *  L  L  Q  Q  N  </second_frame>
            <third_frame>   E  K  W  Q  E  A  V  V  E  V  A  G  E  R  P  L  G  V  E  D  K  H  L  V  Q  L  V  I  G  R  *  L  L  *  R  L  M  M  *  *  E  R  V  K  K  G  K  T  S  R  F  K  M  R  N  Y  H  P  S  L  P  Q  R  *  L  T  R  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  R  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  E  *  S  A  *  N  F  H  Y  I  L  K  V  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  P  V  S  G  E  C  H  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  Q  E  E  R  *  V  P  E  P  R  A  R  Q  D  V  C  Y  C  L  *  G  *  I  S  C  T  I  E  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  R  I  E  V  R  F  V  D  P  S  L  T  D  S  C  C  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4127" stop="3504"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGLTYLSGLSDQGQTPPVFSAPAPQVPGVQHAAAVAPLMDASLEAGTFPRLTTGSIMTSDQHEIFTTFLKLKPPVFKGVESEDAYDFLVDCHELLHKMDIVERYGVEFVTYQFQGNAIMWWRSYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDKRRDEFLSLEQGRMFVTACEAKFRALSRYATQLYFSPQERIHRFVKGLRSDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="30804" PGL_stop="31596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30804" e_stop="31596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="30804" e_stop="31596" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30804" stop="31596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTGTTCCAAGCAACAATCGCCTCAAGACGGTCAACGCCC</gDNA_template>
            <first_frame> E  F  K  K  A  F  F  P  N  N  A  V  Y  E  M  K  R  K  L  W  E  L  K  Q  T  G  S  I  R  A  Y  V  K  E  F  T  I  L  T  L  Q  I  P  Q  L  T  E  D  D  M  L  F  T  F  M  D  G  L  Q  N  W  A  R  T  E  L  E  R  R  Q  V  K  T  I  D  E  A  I  T  Q  A  E  T  L  T  D  F  K  H  D  R  L  D  K  A  K  G  K  E  A  K  G  S  Q  A  K  G  G  G  D  R  G  R  G  R  E  P  S  A  Q  P  K  Q  Q  D  T  L  K  S  D  D  R  Q  F  E  H  R  K  F  S  E  K  R  T  Q  S  S  R  G  D  G  C  Y  I  C  G  G  P  H  G  Y  A  R  C  P  E  M  K  S  L  D  A  I  V  R  E  R  K  E  K  E  A  Q  D  K  A  K  P  A  D  T  T  Q  L  G  M  V  G  I  C  G  A  I  A  K  Q  A  D  N  P  G  D  F  S  T  Q  Y  V  D  I  S  I  N  G  Q  A  V  R  A  M  V  D  S  G  A  E  A  N  I  M  T  K  A  A  T  E  K  L  R  L  K  I  V  P  S  N  N  R  L  K  T  V  N  A  </first_frame>
            <second_frame>  N  S  R  K  L  S  S  P  T  M  L  F  M  R  *  S  A  N  S  G  S  *  S  R  R  E  V  L  G  P  M  *  K  S  S  Q  F  *  P  S  R  F  P  N  S  R  R  M  T  C  C  S  P  S  W  T  G  C  R  I  G  R  G  P  S  *  S  G  V  K  *  K  P  S  M  R  P  S  L  K  P  R  P  *  Q  I  S  N  M  I  V  W  T  R  R  R  E  R  R  Q  R  A  V  K  L  K  A  G  E  T  V  A  E  A  E  N  H  R  H  N  P  S  S  K  T  H  S  S  P  M  T  D  S  L  N  T  G  N  S  R  R  S  G  R  S  P  A  E  E  T  G  A  I  Y  V  A  D  H  T  V  T  P  G  A  Q  R  *  R  V  L  M  P  S  S  V  S  G  R  K  R  R  H  K  T  R  R  N  R  Q  T  P  L  S  W  A  W  L  E  S  V  V  P  *  Q  S  R  L  T  T  R  G  I  S  A  H  N  M  W  I  S  P  S  M  G  K  Q  F  G  P  W  *  I  P  G  L  K  P  T  *  *  P  R  R  R  Q  R  N  *  D  *  K  L  F  Q  A  T  I  A  S  R  R  S  T  P </second_frame>
            <third_frame>   I  Q  E  S  F  L  P  Q  Q  C  C  L  *  D  E  A  Q  T  L  G  V  E  A  D  G  K  Y  *  G  L  C  E  R  V  H  N  F  D  P  P  D  S  P  T  H  G  G  *  H  A  V  H  L  H  G  R  A  A  E  L  G  E  D  R  V  R  A  A  S  S  K  N  H  R  *  G  H  H  S  S  R  D  L  D  R  F  Q  T  *  S  F  G  Q  G  E  G  K  G  G  K  G  Q  S  S  *  R  R  G  R  P  W  P  R  Q  R  T  I  G  T  T  Q  A  A  R  H  T  Q  V  R  *  Q  T  V  *  T  P  E  I  L  G  E  A  D  A  V  Q  Q  R  R  R  V  L  Y  M  W  R  T  T  R  L  R  Q  V  P  R  D  E  E  S  *  C  H  R  P  *  A  E  G  K  G  G  T  R  Q  G  E  T  G  R  H  H  S  V  G  H  G  W  N  L  W  C  H  S  K  A  G  *  Q  P  G  G  F  Q  H  T  I  C  G  Y  L  H  Q  W  A  S  S  S  G  H  G  R  F  R  G  *  S  Q  H  N  D  Q  G  G  D  R  E  I  E  T  E  N  C  S  K  Q  Q  S  P  Q  D  G  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30804" stop="31595"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFKKAFFPNNAVYEMKRKLWELKQTGSIRAYVKEFTILTLQIPQLTEDDMLFTFMDGLQNWARTELERRQVKTIDEAITQAETLTDFKHDRLDKAKGKEAKGSQAKGGGDRGRGREPSAQPKQQDTLKSDDRQFEHRKFSEKRTQSSRGDGCYICGGPHGYARCPEMKSLDAIVRERKEKEAQDKAKPADTTQLGMVGICGAIAKQADNPGDFSTQYVDISINGQAVRAMVDSGAEANIMTKAATEKLRLKIVPSNNRLKTVNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="72075" PGL_stop="72220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72075" e_stop="72220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="72075" e_stop="72220" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72075" stop="72220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTAAGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAAAGAAACTCTAATATACATTATTATTGATGATGCCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  K  F  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  V  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  I  D  D  A  L  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  S  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  L  M  M  P  W  Y  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  *  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  S  I  E  S  Q  I  L  K  R  N  S  N  I  H  Y  Y  *  *  C  L  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="78647" PGL_stop="72468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78647" e_stop="78528"/>
            <exon e_start="73483" e_stop="72612"/>
            <exon e_start="72523" e_stop="72468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.933"/>
          <exon-intron don_prob="0.083" acc_prob="0.000" e_score="0.903"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="78647" e_stop="78528" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78527" i_stop="73484" i_length="5044"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="73483" e_stop="72612" e_length="872"/>
          </exon>
          <intron i_serial="2" don_prob="0.083" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72611" i_stop="72524" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="72523" e_stop="72468" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78647" stop="78528"/>
              <exon start="73483" stop="72612"/>
              <exon start="72523" stop="72468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579412" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAA : GAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTGCACTCCACAAATAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAACCACGGGTACTGAGTAGATATCATCGGTCAACTCAAAATAGAGAACAGTATATATCAAGTAATATCATAAATCAACTATAAAACTCAACATGTAGCAACAACAGGTACTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAATGCCATACTCATTTGGGAATTAAGTTTATTAAGTTGAGTATATTATCATCTTTCAAGATTCATTATCTTTCTTCCTCTTGTTTCGGTACGTGACACTCCGATCCCCTACTACTATGTGTCG : TATATGTGTCGGTACGTGACACTCTGATCCCCTAATTCTACGTGTCGGTTCGTGAC</gDNA_template>
            <first_frame> C  W  C  W  R  S  R  C  S  S  S  N  H  L  Q  K  R  V  K  M  V  R  Y  Q  F  V  S  P  R  Y  Q  L  D  S  S  S  S  T  K  E  :  E  R  V  K  F  S  *  S  L  I  A  S  Q  G  K  V  K  A  S  P  Y  R  S  L  R  L  Y  *  T  C  S  C  V  M  R  P  T  N  L  M  L  *  Y  Q  V  C  H  D  P  N  P  G  R  D  W  H  P  H  L  P  S  Y  V  S  E  P  T  N  L  N  L  N  I  S  R  *  Y  Q  H  K  V  M  R  K  T  *  T  H  *  *  H  Q  F  I  N  F  *  N  S  T  S  I  I  P  Q  N  L  E  V  I  I  T  R  T  S  T  I  K  *  L  N  *  E  Y  S  K  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  P  S  P  S  *  K  H  *  L  T  L  N  I  R  Y  D  E  D  W  L  E  S  L  L  S  *  R  *  R  N  V  C  C  T  P  Q  I  T  R  R  K  H  K  S  R  G  Q  Y  K  P  R  V  L  S  R  Y  H  R  S  T  Q  N  R  E  Q  Y  I  S  S  N  I  I  N  Q  L  *  N  S  T  C  S  N  N  R  Y  Y  N  H  Q  *  V  P  S  S  S  S  M  R  A  Q  A  S  M  P  Y  S  F  G  N  *  V  Y  *  V  E  Y  I  I  I  F  Q  D  S  L  S  F  F  L  L  F  R  Y  V  T  L  R  S  P  T  T  M  C  R :   I  C  V  G  T  *  H  S  D  P  L  I  L  R  V  G  S  *  </first_frame>
            <second_frame>  V  G  V  G  V  V  V  A  L  V  L  T  I  C  K  R  E  *  R  W  S  D  T  N  S  Y  R  L  D  T  N  W  T  Q  V  V  A  R  K  K :   K  E  *  N  F  P  K  V  L  *  P  L  K  E  K  *  R  R  P  P  T  V  P  *  D  S  T  R  P  V  L  V  *  *  D  Q  R  T  *  C  S  D  T  K  F  V  T  T  Q  I  R  A  A  T  G  T  H  T  Y  P  P  M  *  A  N  Q  P  I  *  T  L  T  F  Q  G  N  I  N  I  K  *  C  G  R  L  K  L  I  N  N  I  N  S  L  T  S  K  I  Q  H  L  L  F  P  K  I  W  K  S  S  S  Q  E  H  L  R  S  N  D  L  T  K  S  I  L  K  A  K  N  T  *  E  A  S  P  C  R  K  F  K  A  S  R  L  E  E  E  D  P  V  Q  A  R  S  I  S  S  P  *  I  S  D  M  T  K  T  G  *  N  H  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  E  E  N  I  K  V  G  V  S  T  N  H  G  Y  *  V  D  I  I  G  Q  L  K  I  E  N  S  I  Y  Q  V  I  S  *  I  N  Y  K  T  Q  H  V  A  T  T  G  T  I  I  I  N  K  Y  H  Q  V  H  P  *  G  L  K  P  Q  C  H  T  H  L  G  I  K  F  I  K  L  S  I  L  S  S  F  K  I  H  Y  L  S  S  S  C  F  G  T  *  H  S  D  P  L  L  L  C  V   : V  Y  V  S  V  R  D  T  L  I  P  *  F  Y  V  S  V  R  D </second_frame>
            <third_frame>   L  V  L  A  *  S  L  L  *  F  *  P  S  A  K  E  S  E  D  G  Q  I  P  I  R  I  A  *  I  P  I  G  L  K  *  *  H  E  R   : R  K  S  E  I  F  L  K  S  Y  S  L  S  R  K  S  K  G  V  P  L  P  F  L  K  T  L  L  D  L  F  L  C  D  E  T  N  E  P  N  A  L  I  P  S  L  S  R  P  K  S  G  P  R  L  A  P  T  L  T  L  L  C  E  R  T  N  Q  S  K  P  *  H  F  K  V  I  S  T  *  S  N  A  E  D  L  N  S  L  I  T  S  I  H  *  L  L  K  F  N  I  Y  Y  S  P  K  S  G  S  H  H  H  K  N  I  Y  D  Q  M  T  *  L  R  V  F  *  K  L  K  I  H  K  K  L  V  H  A  G  S  S  R  H  Q  D  L  K  K  K  T  Q  S  K  L  E  A  L  A  H  P  E  Y  P  I  *  R  R  L  A  R  I  T  A  E  L  K  M  T  E  R  L  L  H  S  T  N  N  K  K  K  T  *  K  *  G  S  V  Q  T  T  G  T  E  *  I  S  S  V  N  S  K  *  R  T  V  Y  I  K  *  Y  H  K  S  T  I  K  L  N  M  *  Q  Q  Q  V  L  *  S  S  I  S  T  I  K  F  I  H  E  G  S  S  L  N  A  I  L  I  W  E  L  S  L  L  S  *  V  Y  Y  H  L  S  R  F  I  I  F  L  P  L  V  S  V  R  D  T  P  I  P  Y  Y  Y  V  S  :  Y  M  C  R  Y  V  T  L  *  S  P  N  S  T  C  R  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78537" stop="78528"/>
                    <exon start="73483" stop="73269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HERRKSEIFLKSYSLSRKSKGVPLPFLKTLLDLFLCDETNEPNALIPSLSRPKSGPRLAPTLTLLCERTNQSKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75547" e_stop="75055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="75547" e_stop="75055" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75547" stop="75055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTAAAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAATAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTGGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCACTTCCATTAAGGAATGGGCATTCTCTGAAGTGTTTTTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAAAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAACCACCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  *  N  P  M  Q  S  H  H  F  R  D  V  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  V  S  R  L  S  *  P  I  N  N  Y  P  N  R  I  K  L  S  Q  C  L  G  K  T  N  H  K  V  H  C  N  S  L  P  L  P  L  R  N  G  H  S  L  K  C  F  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  L  G  N  K  V  N  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  I  H  L  G  C  A  R  M  Y  K  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  T  T  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  D  S  K  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  I  I  T  Q  I  E  S  N  F  P  N  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  *  G  M  G  I  L  *  S  V  F  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  K  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  P  P  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  I  V  K  P  H  A  I  A  P  L  P  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  Y  Q  *  L  P  K  *  N  Q  T  F  P  M  S  W  E  D  Q  P  Q  S  P  L  Q  F  S  P  T  S  I  K  E  W  A  F  S  E  V  F  F  R  A  S  G  V  H  T  L  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  D  T  S  W  L  R  P  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75373" stop="75149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNYPNRIKLSQCLGKTNHKVHCNSLPLPLRNGHSLKCFSGPLVFILYLLTVWTLGNKVNNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75762" e_stop="75586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="75762" e_stop="75586" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75762" stop="75586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  R  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  I  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  *  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="77114" PGL_stop="77259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77114" e_stop="77259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="77114" e_stop="77259" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77114" stop="77259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGTTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAAAGAAACTCTAATATACATTATTATTGATGATGCCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  V  M  F  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  V  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  I  D  D  A  L  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  L  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  L  M  M  P  W  Y  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  C  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  S  I  E  S  Q  I  L  K  R  N  S  N  I  H  Y  Y  *  *  C  L  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="78698" PGL_stop="81279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78698" e_stop="80889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="78698" e_stop="80889" e_length="2192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78698" stop="80889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78698" stop="80123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="79468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAGTCCCCAAGAGCGAATTCGCTGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCCTACAGATAGCGGCAACGGCAAAATCCTTCCAGGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCAGAGAGGCCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGATATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGCTGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCTTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTATAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTTGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTTCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAAGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATTTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</gDNA_template>
            <first_frame> K  N  S  D  K  G  P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  N  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  S  S  G  G  T  T  C  G  Y  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  Q  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  K  F  L  R  G  *  V  S  R  T  I  Q  I  C  H  P  I  M  F  Q  S  P  R  A  N  S  L  V  C  E  G  V  E  V  R  I  A  D  F  G  P  T  D  S  G  N  G  K  I  L  P  G  G  G  R  L  C  D  R  S  G  R  S  E  A  R  R  L  H  Y  D  I  D  I  K  K  V  S  K  G  R  *  V  *  W  Y  L  H  *  R  T  G  F  G  K  L  L  S  P  T  N  S  V  F  T  T  D  C  S  W  G  T  T  S  D  R  S  T  L  L  R  E  A  Y  A  *  L  Q  R  V  L  W  M  W  G  Y  *  T  Y  *  E  K  L  S  Q  T  K  L  *  T  P  N  S  *  R  *  R  W  S  W  *  R  P  L  F  W  R  T  W  W  S  R  *  W  W  S  P  K  Q  P  R  C  W  A  N  W  S  H  Y  I  T  T  R  *  G  Q  R  T  D  *  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  F  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  N  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  V  *  V  L  F  G  E  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  L  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  S  R  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  *  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  K  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  L  H  R  L  Q  T  T  E  *  G  N  H  K  E  Q  V  S  S  S  S  H  *   </first_frame>
            <second_frame>  R  T  A  T  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  Q  T  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  I  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  V  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  K  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  K  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  Q  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  S  Y  E  A  R  F  H  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  W  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  T  T  S  T  S  K  R  F  R  K  G  G  E  F  N  G  T  Y  T  R  G  Q  G  S  G  S  Y  S  V  R  P  I  Q  S  S  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  D  I  E  H  I  R  K  N  C  P  R  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  S  R  G  A  G  Q  T  G  A  T  T  S  Q  Q  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  L  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  T  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  C  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  S  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  I  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  Q  R  Q  G  A  V  V  E  V  V  G  G  R  P  L  G  E  E  D  K  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  Y  L  K  L  R  R  Y  N  M  R  L  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  S  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  K  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  *  I  L  T  R  L  G  F  T  H  Y  P  N  M  P  P  N  Y  V  S  V  P  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  R  R  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  L  R  H  R  H  Q  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  R  V  R  E  V  T  Q  S  D  Q  F  S  L  H  Y  R  L  *  L  G  D  H  L  R  P  V  N  T  S  Q  R  G  L  C  L  T  P  E  S  V  M  D  V  G  I  L  N  I  L  G  K  I  V  P  D  K  V  I  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  I  L  E  D  V  V  V  E  V  M  V  V  T  K  T  A  E  V  L  G  K  L  E  P  L  H  H  N  K  V  G  A  T  D  R  L  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  L  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  C  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  I  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  *  F  A  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  L  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  F  A  *  T  T  D  N  *  I  R  *  P  *  R  T  S  I  L  F  L  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78699" stop="80888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2190</number_coding_nucleotides>
                  <number_encoded_amino_acids>730</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTATRGRGRGRGRTSSRGRGQTPSPSDTRAVTPPPTEEVIREGEDGEIEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPVPQAPEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESKDAYDFLVDCHELLHKMGIVKRFGVEFVSYQFQGNAKMWWRSHIECQQTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNSYEARFHALSKYATQLCFSPQERIRWFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKPDDFTTTSTSKRFRKGGEFNGTYTRGQGSGSYSVRPIQSSLQTVVGGPPQTGQHFSERPMLDSRECYGCGDIEHIRKNCPRQSYRPPIARGRGGHGRGRYSGGRGGRGNGGHQNSRGAGQTGATTSQQGRGNGQTNDRAHCYAFLGRSEAEASDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLTLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDYNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLCAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKSFIRPSASPWGAPVLFVKKKDGSFRICIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78716" e_stop="79600"/>
            <exon e_start="80716" e_stop="81279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.897"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="78716" e_stop="79600" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79601" i_stop="80715" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="80716" e_stop="81279" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="79468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78728" stop="79600"/>
              <exon start="80716" stop="81279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACAAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTAAATTCTTACGAGGCTAGGTTTCACGCACTATCCAAATATGCCACCCAATTATGTTTCAGTCCCCAAGAGCGAATTCGCTGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCCTACAGATAGCGGCAACGGCAAAATCCTTCCAGGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AAGCCCAACTTCAAGAGTTGTTAAACAAAAGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATTTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAATAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  N  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  S  S  G  G  T  T  C  G  Y  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  Q  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  K  F  L  R  G  *  V  S  R  T  I  Q  I  C  H  P  I  M  F  Q  S  P  R  A  N  S  L  V  C  E  G  V  E  V  R  I  A  D  F  G  P  T  D  S  G  N  G  K  I  L  P  G  G  G  R  L  C  D  R  S  G  R  S  E  :  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  F  A  *  T  T  D  N  *  I  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  G  F  L  S  H  I  W  I  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  I  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  Q  T  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  I  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  V  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  K  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  K  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  Q  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  S  Y  E  A  R  F  H  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  W  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   S  P  T  S  R  V  V  K  Q  K  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  L  H  R  L  Q  T  T  E  *  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  *  A  I  F  G  S  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  *  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  K  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  Y  L  K  L  R  R  Y  N  M  R  L  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  S  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  K  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  *  I  L  T  R  L  G  F  T  H  Y  P  N  M  P  P  N  Y  V  S  V  P  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  R  R  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  S  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  I  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  N  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78717" stop="79600"/>
                    <exon start="80716" stop="80755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGQTPSPSDTRAVTPPPTEEVIREGEDGEIEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPVPQAPEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESKDAYDFLVDCHELLHKMGIVKRFGVEFVSYQFQGNAKMWWRSHIECQQTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNSYEARFHALSKYATQLCFSPQERIRWFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKSPTSRVVKQKLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="81407" PGL_stop="78698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80592" e_stop="78698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="80592" e_stop="78698" e_length="1895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80592" stop="80099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80417" stop="80092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80205" stop="78698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTT</gDNA_template>
            <first_frame> G  T  H  P  K  T  R  E  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  K  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  *  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  Q  H  L  G  C  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  Y  P  H  I  H  N  T  L  W  S  Q  A  *  A  S  L  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  P  G  R  I  L  P  L  P  L  S  V  G  P  K  S  A  I  L  T  S  T  P  S  Q  T  S  E  F  A  L  G  D  *  N  I  I  G  W  H  I  W  I  V  R  E  T  *  P  R  K  N  L  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  F  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  *  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  *  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  S  C  G  E  P  *  *  P  H  V  V  P  P  E  L  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  S  L  F   </first_frame>
            <second_frame>  E  H  I  Q  K  L  A  N  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  I  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  K  E  S  V  T  M  G  P  I  V  S  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  S  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  F  N  I  P  T  S  I  T  L  S  G  V  K  H  R  P  L  *  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  G  T  E  T  *  L  G  G  I  F  G  *  C  V  K  P  S  L  V  R  I  Y  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  L  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  D  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  Y  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  N  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  L  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S  </second_frame>
            <third_frame>   N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  Q  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  R  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  A  P  R  L  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  S  I  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  R  A  E  I  R  N  S  D  L  N  P  F  T  N  Q  R  I  R  S  W  G  L  K  H  N  W  V  A  Y  L  D  S  A  *  N  L  A  S  *  E  F  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  C  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  L  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  L  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  F  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  T  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  I  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  V  A  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79175" stop="78921"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRYWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79666" stop="79430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICRAEIRNSDLNPFTNQRIRSWGLKHNWVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78920" stop="78699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFNFPILPFSYYLLSRWRSHCPSIRWTRCLSSSPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79976" stop="79767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPSTSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMFNIPTSITLSGVKHRPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78895" stop="78698"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSISPSSPSLITSSVGGGVTALVSDGLGVCPLPLEDVLPRPLPRPLVAVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81407" e_stop="80306"/>
            <exon e_start="79561" e_stop="79363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.859"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="81407" e_stop="80306" e_length="1102"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80305" i_stop="79562" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.859">
            <gDNA_exon_boundary e_start="79561" e_stop="79363" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81407" stop="80596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80836" stop="80306"/>
              <exon start="79561" stop="79363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCT : TGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  I  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  S  V  V  Y  A  N  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  N  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  I  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F   : L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  G  T  E  T  *  L  G  G  I  F  G  *  C  V  K  P  S  L  V  R  I  Y  R  H  P  T  L  L  *  A  Q  E  L  I  P  F   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  Q  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  L  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  Q  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  :  W  K  D  F  A  V  A  A  I  C  R  A  E  I  R  N  S  D  L  N  P  F  T  N  Q  R  I  R  S  W  G  L  K  H  N  W  V  A  Y  L  D  S  A  *  N  L  A  S  *  E  F  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  Q  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  Y  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  V  V  C  S  L  C  K  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  F  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  E  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  K  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L :   G  R  I  L  P  L  P  L  S  V  G  P  K  S  A  I  L  T  S  T  P  S  Q  T  S  E  F  A  L  G  D  *  N  I  I  G  W  H  I  W  I  V  R  E  T  *  P  R  K  N  L  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80680" stop="80435"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLAQRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81143" stop="80904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEIQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80702" stop="80502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGACARFKIDTEVNIPIWWHTRKICREHIQKLANYRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81211" stop="81014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80371" stop="80306"/>
                    <exon start="79561" stop="79430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIANCGESQVIPRITSKSSISWKDFAVAAICRAEIRNSDLNPFTNQRIRSWGLKHNWVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="87213" PGL_stop="98144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87213" e_stop="87495"/>
            <exon e_start="87652" e_stop="87781"/>
            <exon e_start="88251" e_stop="88388"/>
            <exon e_start="90630" e_stop="90962"/>
            <exon e_start="91457" e_stop="91637"/>
            <exon e_start="97701" e_stop="98144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87213" e_stop="87495" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87496" i_stop="87651" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87652" e_stop="87781" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87782" i_stop="88250" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88251" e_stop="88388" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.955">
            <gDNA_intron_boundary i_start="88389" i_stop="90629" i_length="2241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90630" e_stop="90962" e_length="333"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="90963" i_stop="91456" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91457" e_stop="91637" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.950">
            <gDNA_intron_boundary i_start="91638" i_stop="97700" i_length="6063"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="97701" e_stop="98144" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87213" stop="87495"/>
              <exon start="87652" stop="87781"/>
              <exon start="88251" stop="88388"/>
              <exon start="90630" stop="90962"/>
              <exon start="91457" stop="91637"/>
              <exon start="97701" stop="98144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAGGATTCATTTGTACTGTATTTTTCTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG : TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT : ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG : TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG : TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG : TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACAATATCTGTGTCGGATATTTCTGTTGTCATTGATATTCTTATTTCATTGCCA</gDNA_template>
            <first_frame> C  R  I  H  L  Y  C  I  F  L  N  K  I  I  S  K  I  W  M  V  P  F  R  K  R  I  R  *  C  R  M  W  L  H  L  R  L  N  N  H  L  R  R  H  N  R  W  L  E  W  I  I  F  R  R  R  *  A  M  V  A  G  S  F  N  T  I  F  L  V  I  F  L  K  L  L  L  S  I  N  L  L  *  C  Q  L  V  K  V  L  M  E  S  F   : V  L  L  *  I  R  R  Q  M  N  L  *  Q  L  R  K  L  L  M  L  L  I  T  R  L  M  L  R  G  L  *  E  R  S  S  F  F  D  I  W  I  M  K  I :   L  L  R  S  E  I  *  F  H  H  H  R  E  K  P  L  T  M  F  T  L  R  M  S  L  W  I  L  I  S  I  K  L  F  A  R  I  R  V  Y  L  R  S  T  A  S :   I  S  C  I  R  S  S  V  G  *  N  T  Y  I  L  Q  M  F  C  T  E  T  *  S  L  A  I  F  S  *  M  P  T  V  I  *  R  Y  V  I  L  G  *  L  V  S  L  L  K  L  T  L  *  P  N  M  L  *  Q  D  G  I  V  H  L  S  C  C  *  I  H  P  T  I  L  Q  Q  L  M  Y  G  Q  W  V  A  S  S  W  S  *  W  T  E  N  P  S  S  L  A  E  I  M  Y  T  S  C  V  L  L  W  S :   *  L  A  L  L  Q  R  L  K  W  N  F  *  M  R  M  Q  N  A  I  S  D  N  F  L  F  T  V  D  N  H  L  L  K  S  S  R  M  *  T  Q  L  L  L  I  L  S  R  K  C  *  H  L  I  P  E  G  E  *  Q  :  L  K  T  L  L  H  I  L  T  *  H  R  S  M  I  S  V  T  S  P  F  A  *  L  L  L  A  S  T  L  S  S  M  R  L  Q  R  N  R  *  R  S  *  F  T  G  S  R  L  H  L  I  L  N  T  S  A  C  E  *  L  L  T  D  C  C  R  F  D  L  H  V  M  C  N  *  Q  Y  I  S  P  C  I  Y  V  C  I  P  S  G  N  M  D  E  F  L  M  Q  T  L  S  Y  E  A  D  L  C  M  E  S  C  L  M  Y  L  Y  G  V  D  F  I  L  D  *  N  E  K  F  W  W  T  I  S  V  S  D  I  S  V  V  I  D  I  L  I  S  L  P </first_frame>
            <second_frame>  V  G  F  I  C  T  V  F  F  *  T  K  L  F  P  K  Y  G  W  F  R  S  A  N  G  Y  D  D  V  G  C  G  C  T  S  G  S  T  T  T  S  A  V  T  T  A  G  W  N  G  *  Y  S  G  D  V  K  P  W  W  Q  V  H  S  I  Q  Y  F  W  *  Y  F  *  S  Y  C  *  V  *  T  S  Y  N  A  N  W  *  R  C  L  W  N  R  L  :  F  C  F  E  F  G  D  K  *  I  C  S  N  *  E  N  C  *  C  F  *  *  Q  D  *  C  *  E  D  F  E  R  D  Q  A  S  S  T  Y  G  S  *  K   : Y  C  C  D  Q  R  Y  N  S  T  T  T  E  R  S  L  *  R  C  L  H  C  V  *  A  Y  G  Y  *  S  P  S  N  Y  S  L  E  S  G  F  I  *  G  A  L  P   : V  F  L  V  S  D  P  P  W  V  E  I  H  T  F  C  K  C  F  A  Q  R  L  K  A  *  Q  S  S  L  E  C  Q  L  *  F  E  D  M  *  F  W  A  S  S  C  H  F  *  N  *  L  Y  D  R  I  C  C  D  K  M  V  S  S  T  *  A  V  V  E  F  I  R  L  Y  C  S  N  *  C  M  V  S  G  L  H  L  H  G  V  D  G  Q  K  T  P  L  P  W  Q  R  S  C  T  P  A  A  S  Y  Y  G   : V  D  W  H  S  F  R  G  *  N  G  I  F  K  *  E  C  K  T  L  Y  P  T  T  S  S  L  P  S  T  I  I  Y  *  K  V  P  A  C  K  P  S  C  Y  *  S  C  R  E  N  V  D  I  *  S  Q  K  E  N  N  S :   *  R  R  S  C  T  S  L  P  N  I  A  P  *  Y  Q  *  R  A  H  L  H  D  S  F  *  L  R  L  *  A  A  C  A  Y  R  G  T  D  E  G  A  N  L  Q  G  V  D  C  I  *  S  *  I  P  A  H  V  N  N  C  *  Q  I  V  A  G  L  I  Y  M  L  C  V  T  D  N  I  S  P  H  V  Y  M  C  A  F  R  P  G  T  W  M  S  F  L  C  K  H  L  V  M  K  L  T  Y  V  W  R  V  V  *  C  I  F  M  G  W  I  L  F  *  T  E  M  K  N  S  G  G  Q  Y  L  C  R  I  F  L  L  S  L  I  F  L  F  H  C   </second_frame>
            <third_frame>   *  D  S  F  V  L  Y  F  S  E  Q  N  Y  F  Q  N  M  D  G  S  V  P  Q  T  D  T  M  M  S  D  V  A  A  P  P  A  Q  Q  P  P  P  P  S  Q  P  L  A  G  M  D  N  I  P  A  T  L  S  H  G  G  R  F  I  Q  Y  N  I  F  G  N  I  F  E  V  T  A  K  Y  K  P  P  I  M  P  I  G  K  G  A  Y  G  I  V  C :   S  A  L  N  S  E  T  N  E  S  V  A  I  K  K  I  A  N  A  F  D  N  K  I  D  A  K  R  T  L  R  E  I  K  L  L  R  H  M  D  H  E  N  :  I  V  A  I  R  D  I  I  P  P  P  Q  R  E  A  F  N  D  V  Y  I  A  Y  E  L  M  D  T  D  L  H  Q  I  I  R  S  N  Q  G  L  S  E  E  H  C  Q  :  Y  F  L  Y  Q  I  L  R  G  L  K  Y  I  H  S  A  N  V  L  H  R  D  L  K  P  S  N  L  L  L  N  A  N  C  D  L  K  I  C  D  F  G  L  A  R  V  T  S  E  T  D  F  M  T  E  Y  V  V  T  R  W  Y  R  P  P  E  L  L  L  N  S  S  D  Y  T  A  A  I  D  V  W  S  V  G  C  I  F  M  E  L  M  D  R  K  P  L  F  P  G  R  D  H  V  H  Q  L  R  L  I  M  E  :  L  I  G  T  P  S  E  A  E  M  E  F  L  N  E  N  A  K  R  Y  I  R  Q  L  P  L  Y  R  R  Q  S  F  T  E  K  F  P  H  V  N  P  A  A  I  D  L  V  E  K  M  L  T  F  D  P  R  R  R  I  T   : V  E  D  A  L  A  H  P  Y  L  T  S  L  H  D  I  S  D  E  P  I  C  M  T  P  F  S  F  D  F  E  Q  H  A  L  T  E  E  Q  M  K  E  L  I  Y  R  E  S  I  A  F  N  P  E  Y  Q  R  M  *  I  I  A  D  R  L  L  Q  V  *  S  T  C  Y  V  *  L  T  I  Y  L  P  M  Y  I  C  V  H  S  V  R  E  H  G  *  V  S  Y  A  N  T  *  L  *  S  *  L  M  Y  G  E  L  F  D  V  S  L  W  G  G  F  Y  F  R  L  K  *  K  I  L  V  D  N  I  C  V  G  Y  F  C  C  H  *  Y  S  Y  F  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87218" stop="87495"/>
                    <exon start="87652" stop="87781"/>
                    <exon start="88251" stop="88388"/>
                    <exon start="90630" stop="90962"/>
                    <exon start="91457" stop="91637"/>
                    <exon start="97701" stop="97876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSFVLYFSEQNYFQNMDGSVPQTDTMMSDVAAPPAQQPPPPSQPLAGMDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNESVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRPPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLIMELIGTPSEAEMEFLNENAKRYIRQLPLYRRQSFTEKFPHVNPAAIDLVEKMLTFDPRRRITVEDALAHPYLTSLHDISDEPICMTPFSFDFEQHALTEEQMKELIYRESIAFNPEYQRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="113620" PGL_stop="105229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113620" e_stop="113283"/>
            <exon e_start="112304" e_stop="112203"/>
            <exon e_start="111467" e_stop="111326"/>
            <exon e_start="111193" e_stop="111147"/>
            <exon e_start="105458" e_stop="105229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.132" e_score="0.979"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="113620" e_stop="113283" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="113282" i_stop="112305" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112304" e_stop="112203" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112202" i_stop="111468" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111467" e_stop="111326" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="111325" i_stop="111194" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="111193" e_stop="111147" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.132">
            <gDNA_intron_boundary i_start="111146" i_stop="105459" i_length="5688"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="105458" e_stop="105229" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113620" stop="113283"/>
              <exon start="112304" stop="112203"/>
              <exon start="111467" stop="111326"/>
              <exon start="111193" stop="111147"/>
              <exon start="105458" stop="105229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG : GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG : GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG : ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG : TTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCGAGGT</gDNA_template>
            <first_frame> K  I  Y  P  S  F  K  S  G  N  S  Q  I  V  V  F  L  L  V  E  K  K  I  Y  T  N  L  L  S  S  C  V  L  I  T  L  S  S  Q  S  P  P  Q  N  L  *  S  F  L  K  I  F  L  F  M  P  Q  L  L  S  F  C  S  *  N  C  S  F  *  T  G  G  F  P  F  *  F  *  T  Q  K  *  K  K  W  E  K  I  K  L  T  K  L  C  S  E  Q  G  W  V  L  A  Q  V  D  L  M  K  L  M  M  E  W :   W  M  V  L  F  I  H  Q  S  G  M  R  L  V  *  Q  A  S  K  H  L  I  Q  L  P  G  K  S  S  N  R  N  R  R :   K  K  K  *  E  K  E  S  *  K  Q  T  K  I  K  *  *  G  N  T  G  L  S  *  M  L  K  G  P  A  N  S  L  M  E  G  I  I  P  A  V  N  T  A  A  K  R  :  I  R  R  T  K  M  L  G  N  R  E  A  K  R  E  S :   S  Y  L  K  I  F  R  M  D  L  C  D  *  V  L  H  L  N  D  T  C  I  L  P  K  L  I  Q  R  S  R  R  Y  S  D  S  S  S  S  S  S  S  S  E  S  S  S  S  D  D  E  D  R  E  S  R  K  S  R  S  K  S  K  R  R  K  K  E  K  K  H  Q  L  R  S  R  </first_frame>
            <second_frame>  K  S  I  H  L  S  S  P  V  I  P  K  L  L  Y  F  C  L  W  K  R  R  S  I  P  I  C  Y  H  R  V  F  *  *  P  F  H  L  K  V  H  P  K  T  Y  K  V  S  S  R  S  S  F  L  C  H  N  Y  S  L  F  A  L  E  I  V  R  S  E  L  G  V  F  P  F  D  F  E  P  K  S  K  K  N  G  K  K  S  S  L  Q  S  Y  A  A  S  K  V  G  F  *  L  R  W  T  *  *  S  *  *  W  N   : G  G  W  F  F  S  Y  T  R  V  A  C  G  S  F  S  K  P  Q  N  I  S  Y  S  Y  L  G  R  V  Q  T  E  T  E   : G  R  R  S  E  K  R  R  A  R  S  R  Q  R  *  N  D  E  G  I  Q  G  S  A  R  C  *  K  G  Q  Q  T  L  S  W  K  E  S  F  Q  Q  *  T  Q  P  Q  K  G :   *  E  G  Q  R  C  *  E  T  E  K  Q  K  E  K   : V  H  I  *  R  S  S  E  W  T  C  V  I  E  Y  Y  I  *  M  T  H  V  Y  Y  L  N  *  F  S  V  Q  G  D  I  P  I  P  A  L  Q  A  H  H  L  N  L  Q  V  L  T  M  K  I  E  N  P  E  N  Q  D  P  S  L  R  E  G  R  K  K  R  S  I  S  *  G  R  G </second_frame>
            <third_frame>   N  L  S  I  F  Q  V  R  *  F  P  N  C  C  I  F  A  C  G  K  E  D  L  Y  Q  S  V  I  I  V  C  F  D  N  P  F  I  S  K  S  T  P  K  P  I  K  F  P  Q  D  L  P  F  Y  A  T  T  T  L  F  L  L  L  K  L  F  V  L  N  W  G  F  S  L  L  I  L  N  P  K  V  K  K  M  G  K  N  Q  A  Y  K  A  M  Q  R  A  R  L  G  S  S  S  G  G  P  D  E  V  D  D  G  M  :  V  D  G  S  F  H  T  P  E  W  H  A  A  R  L  A  S  L  K  T  S  H  T  V  T  W  E  E  F  K  Q  K  Q  K  :  E  E  E  V  R  K  G  E  L  E  A  D  K  D  K  M  M  R  E  Y  R  A  Q  L  D  A  E  R  A  S  K  L  S  H  G  R  N  H  S  S  S  K  H  S  R  K  K   : D  K  K  D  K  D  A  R  K  Q  R  S  K  K  R  K  :  F  I  F  E  D  L  Q  N  G  L  V  *  L  S  T  T  F  E  *  H  M  Y  I  T  *  T  D  S  A  F  K  E  I  F  R  F  Q  L  F  K  L  I  I  *  I  F  K  F  *  R  *  R  *  R  I  Q  K  I  K  I  Q  V  *  E  K  E  E  R  K  E  A  S  V  E  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113591" stop="113283"/>
                    <exon start="112304" stop="112203"/>
                    <exon start="111467" stop="111326"/>
                    <exon start="111193" stop="111147"/>
                    <exon start="105458" stop="105423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNCCIFACGKEDLYQSVIIVCFDNPFISKSTPKPIKFPQDLPFYATTTLFLLLKLFVLNWGFSLLILNPKVKKMGKNQAYKAMQRARLGSSSGGPDEVDDGMVDGSFHTPEWHAARLASLKTSHTVTWEEFKQKQKEEEVRKGELEADKDKMMREYRAQLDAERASKLSHGRNHSSSKHSRKKDKKDKDARKQRSKKRKFIFEDLQNGLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 44816 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2240 bytes was the average size of a spliced alignment
$ 15704 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1744 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 124 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:57:33
-->
