<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:43:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390276" ref_strand="+" ref_description="SGN-E390276 [TUS-40-K13]">
      <seq>atgcttctttgcatgcccattgcatttttgattggaattcacgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="4995" stop="5853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5295" g_stop="5551" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E390276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5295" e_stop="5551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG</genome_strand>
        <mrna_strand>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309551" ref_strand="+" ref_description="SGN-E309551 [cTOA-3-H19]">
      <seq>tgcttctttgcatgcccattgcatttgtgattggaattcgcgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctgttgtgtttctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatatgaaattaatgcatcgatcagtatacacagacgtggacaatttggaaagccaactttcactcactgagaaggaaattatgagggcatgtgatatatcttcaacgctggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="4996" stop="7199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5296" g_stop="5551" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="6899" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="499" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E309551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5296" e_stop="5551"/>
          <exon e_start="6657" e_stop="6899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGAT</genome_strand>
        <mrna_strand>TGCTTCTTTGCATGCCCATTGCATTTGTGATTGGAATTCGCGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325232" ref_strand="+" ref_description="SGN-E325232 [cTOC-1-A22]">
      <seq>ttctttgcatgcccattgcatttttgattggaattcacgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctgttgtgtttctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="4999" stop="7089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5299" g_stop="5551" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="6789" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="386" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E325232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5299" e_stop="5551"/>
          <exon e_start="6657" e_stop="6789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGA</genome_strand>
        <mrna_strand>TTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539783" ref_strand="+" ref_description="SGN-E539783 [TUS-59-L13]">
      <seq>ttggaattcacgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctgttgtgtttctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatatgaaattaatgcatcgatcagtatacacagacgtggacaatttggaaagccaactttcactcactgagaaggaaattatgagggcatgtgatatatcttcaacgctggatgatgcagaagttgttccgctatcacagaaatggcctacttccaaagttgctgtattcttaattgattcaaggagggagaattgcttgctcatgcatagttctatgacctgcgcagtttggtccattattgagaaacatcttgatgtctcttcaagttatctttttgattcaaagtgcataagcaaaaagaaaaaagctaacatgttttcaaccagtcttcagtatgctgatggatcatcgctccaagatcttgcgctttccgctgccacagaagcaacaggcatcaatagaagtgatctggttgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="5026" stop="9280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5326" g_stop="5551" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="7176" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="746" r_length="520" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7177" i_stop="8952" i_length="1776">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8953" g_stop="8980" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="774" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E539783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5326" e_stop="5551"/>
          <exon e_start="6657" e_stop="7176"/>
          <exon e_start="8953" e_stop="8980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAGGTATATGCTTAATGAGTAATCACAATTCTAGAGTTTTATGTTCTCAAAATTTGCCTTTGGAAGTGATTTTCTCCTTCCCACCAAATTGGGTTTGAACTGATCTTTCCTGTGGTGCCTGTTTATTCTATCAGTACTATGGAAGTAGTTCTTTTGGTTTGTTTGTGCTGCCTATCAGTAGTAAGCAAGTGGTTCTTGTGGTTTGTTTGTGAGAAGTGATGTCCATTGTGGTTCATGTTGTGAAAAGATGTTTCATGCACCTGTCACTCAATGCTACAATGACTACATTTTATTTCTTTTAACTACAATCTCTCTCTCTCTCTCTCTCTATAAAGTAGAATATGAAAACGGTGATGTGGCACCTCTCAATGGCCATCATTATTATTTATCTATTTTGTCAAATTTTTAAGCTTTTATCTCATTTTCCCAAATTAAAAATAAAATATATTCATGATATAAAAGGATGAACGAAATTTTCATTATTCTTACAACCTTACATTTATCTTCTTTTAGTACGATTCTGTTATCATCATAACACCTAAAATAATTAATGTCTTATTCATGACATTATTTGTTATTTCAAATCGTAGTCCTATAAATAGAGACAATAATGATCAGATTAGCATTTTAATTTGTTAAGGTGCTTATTATATTCATACTTCGGTTGACTTGAAGAATAGGATGAAGACTATTGAATGATGATTGACTTATGGGAGTATATGTCGACCAGAACTCGGAAGATTTTGTATATTGATCTCATTTTTTTAAATGATTATGATTGTAAAAATGACGTTGTATTATTTACTTTTTTTTATGCTCTCTCTATAATTACTCTTCATTTTATATTTTATATGAACTTTTTATTATCGTAAGTCTATGATTTCTTTTCTTTCAAAATATAACTCACGATTTTGTTGAAAGTTTACTAACAAACCAAATATTTATACAGATAGATAGAAATGAGAGATACGTATAGTAATATTTAATTTTTAAAAGATGATATCTTATCATCTTTCATAACTGCGCGAAGCGCAGATAAGTTCACAACTACATAATACCAAGGAAGTTGAGGTGGTTTTATGAATCATCACTGTCCATGTCGTTCCAATTAAGTCCGTCTCAGTTCAATTTTATAAAAAAAAATGTTCCACCAAGACTAGAGGTCAAATTATTTTTTATGAATATATACGAGATGGTGAATCTCCTTGACTTCTTCGTGTGTTTGCTCTTTTACATTTTTAATCTTAGTGAAAATTGTGGTTCTGCCACCTACAAAGACCTCAAGTTAATTTACAATAATAACTTAGTTGACAATCATTTTTTTCTTGATATTTAAATTTTTAGTGTATAGGGGTCTGGGCAAAAGGTAATGAGTTCCCGTGAATCCATTGGTTGTGTTCTAGATCTGTCACTGCCCCCATGGGTTCTCTATCTTTGAGTTATAGGAATCTTCCTTACATTTATTTTGTTTGTCTGAAAAATACTCTCAAGTTTGGTTTGATTTTTTGTGTAGCTAGCTGGATTGATCTGTAATTATTTTTATTCCACTAGAATCAGTCATGATTAGTAACCTTTTTCTGCCTTTTGATCTCTTTGAAGTAATTAACTCTGCTACTAGTATACTGAATAATATCCTATCTTTTAAGCAACCATATATTTTCTGCTTAGCCAAAGGCAGCTTCAGATGTAATGTTGGAAATATTGCCATAATACTTCAGTTTATGTGCTGTAATATATGTAGAAGGACTAAATATTTCATGTAATTTGCATTTGAAACAGGCATCAATAGAAGTGATCTGGTTGTCCT</genome_strand>
        <mrna_strand>TTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGAAGTGATCTGGTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284544" ref_strand="+" ref_description="SGN-E284544 [cLES-3-H5]">
      <seq>tggaattcacgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctgttgtgtttctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatatgaaattaatgcatcgatcagtatacacagacgtggacaatttggaaagccaactttcactcactgagaaggaaattatgagggcatgtgatatatcttcaacgctggatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="5027" stop="7201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5327" g_stop="5551" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="6901" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="470" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E284544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5327" e_stop="5551"/>
          <exon e_start="6657" e_stop="6901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGC</genome_strand>
        <mrna_strand>TGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480199" ref_strand="+" ref_description="SGN-E480199 [cSTD-13-I17]">
      <seq>ctagaaccagatgacggaaaaaatggaggtgacggagaaggtgtgtgcaacagaggaagtagttcaggcgttgctggaatgtatggtggagccgttgttagggcacagttcttgcaaatcaaagaaagttccgacacttgatcaacaaaaatccatggctaaacaggtgggtgctgttgtgttgctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatgtgaaattaatgcatcgatcagattacacagacgtggacaatttggaaagccaactttcactcactgagaaggaaattatgagggcatgtgatatatcttcaacgctggatgctgcagaagttgttccgctatcacagaaatggcctacttccaaagttgctgtattcttagttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="5086" stop="7264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5386" g_stop="5551" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="6964" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="474" r_length="308" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E480199" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5386" e_stop="5551"/>
          <exon e_start="6657" e_stop="6964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTC</genome_strand>
        <mrna_strand>CTAGAACCAGATGACGGAAAAAATGGAGGTGACGGAGAAGGTGTGTGCAACAGAGGAAGTAGTTCAGGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCACAGTTCTTGCAAATCAAAGAAAGTTCCGACACTTGATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTGCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATGTGAAATTAATGCATCGATCAGATTACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGCTGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAGTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539781" ref_strand="+" ref_description="SGN-E539781 [TUS-59-L13](-)">
      <seq>gaagacgagattgctttgtgtaataaaactattcaggcagaattaaacgggggtgaaaatgaagctcttaaagatgtctgtaatgacatgtgtaaagaagatgaagacagtgccaatcaactggtagaagactcatgtactattcaatatagcaagggaaaaagattgtccgaggctattcttactttgcaaaaccaatgtcagcaactggatcaattctgctgcaggaataattgggtattgccaacatatcaagtctttccacttgagggtggatttcttgccaaggtcattgtaagagctgctgattccaaagttgtcagtagaagcaagatctgtgagagtccgcgcgaagcaagggaatccgctgctgcgcacgtgatttcaagctttcaaaagtgagagtccgcgtgaagcaagggagtctgctgctgcaaacatgaatgcaacgagtagctccgtggtagttcagaatccatagctttgcaaaggggctattactgctctttgcaagttgtaccaaagatcgaatctgtcttgccattttcccctgtaaactcaactcaaaacatgtactcataagttaaactgtgtaagaatgtgtaaacttatagattctagttatgaagaaataccaactgttgtcgactcttcgataaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="15258" stop="20237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15558" g_stop="15606" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15607" i_stop="16418" i_length="812">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16419" g_stop="16573" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="204" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18591" g_stop="18657" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="271" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19550" g_stop="19936" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="658" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="674"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E539781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15558" e_stop="15606"/>
          <exon e_start="16419" e_stop="16573"/>
          <exon e_start="18591" e_stop="18657"/>
          <exon e_start="19550" e_stop="19936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACGGTACGATCTTTTCTCCATTGCTAGCGTGTTTCATCTGAATCAATGAATATTAGATTTTTATAAGACAGGAAGTTCTTTTGTTTCCTTTAAGGCATTACATAGATTGATGTGCCGTGTGCGGCTGTAAGAATGAGTTGAAAAGCAACAAACTGCCAGTTGAAGGTTCCATGTATCATCAGTTTTTTTCTTTTTCTTTTTTTGTTCTCGTATATTCTTGTATTGCTATCTATCTTTTTATTTACAACTTGAAAAAATCAGAAATGAAACTTGCCTTCTCGTGTTTGTTTTCCTGTTTGCTCTTTTTCAAGGATCATATTGTTCCTTACGAGTTGGTAAGGGTTTGTTTTTCTTGTTTTCCTGCCACGACAGTAGTATTTTGTTCTTCAAAGAAGGAAAGAAAATTTGAATATTCCTCAACTAGTTATCTTCAATCAAAGTCTGTTCCTTTTAGAGATGCAGCCCAACATGGATCTAAAAGTTGCATTTTTGATAAGTTTCAAAATTTAATGAGATAAATCAAGACCTATTTGTTTCTTAAAAAAATGATAAATAACGAAAGGAAAATCTTTTATTAGAAATTGCTGACAGTTTTGTGTCACTTTAATTGGAACTGAGAAAAAGAATGGGCAGAAACTATTGTGGTACCTTTTCTCTTATGACAGGTGACATTATCTGTTGCTAATATTTGATGTTTCAATACCCATTATGATACTTTATGTCAGCCTTCGGGAGACTTTTCAGTTGAATAGCAGCAGTCTAATACAATTGGACTGGGAACTGTCAGCATGATTTCCTACTTAATATGTATGCAGGGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAGGCAAGATGAGGCATCCAAATTTGACACATTATTTTTTTTCGCTTTCCTTATTTTCGGTCTGTCTTATTTTTCTTCTTGAGAATGGTAACTGTTAATCTCTATATCCACATGTATACTACATCAGAATATGTTGTCCCCCTTTAAAAGTATTACAACTTACAACTAGATCACCTATTTGTTGCTTTTCCTACAAATACTTTAGAACATCAAAGTAATCTTCTATTTGAGCTAACAGTTCCTGTTTAAACCAAAAGTAATAAAGAGCTAAGCAATTCGTCTTGAACCTCTGCAAATTGCTCTGCTTGTCCTCGAAACATCTTTTATTTATTTCTCTCCATGCTGTCCACCAAAAACATGCTGGGACAATTCCATATCTTCTCCTTTTATGCTCTCTGGCTTCACCTACCTAATCTTTCTCAGGCTGATGAACATCTTCCATAGCTGATCTGTCACTTGCATGTAAAAGAAGATGGTTATGTCTTAGCTTGCTCCCCATATAAGAAGCATCTAGAGCATATGTAAAACTTCTTTTGTTCAGATTCTCAGGGGTCTATGCTGCTTCCTTTGCCAAAAGTCAGGTAAAATAGTTCACTTTATAAGGAACTTTTGTTTTCTAAATCGTCTTCCACGAGCAACTTTCCTACTGAAGATTTGATAAGTTTAGGTCCTTATATGCTGAACTAACAGAGAAGAACAGCCCTTTGATATCTTTCTCCCATACCATAGTATCCCTTTCCCCAGATAAGCTATTGAAAGGTGAAAACTATGTTGTAGAAGGCTTCTATTCTTTCCATTTTGCTATCGTTCAAATGTCTTCAGTTCGTCCTCTGTTGTTGGAAATTTTCTTCATGTTTGATATTTGTAAGATTTCCTTTCCAATATATCGGAAGTCATTATTGAGACACATATTAGACATGCTTGTTTTATTGAACTAAGAAAGATGGAAGTACTTGTTTTGACTTGCATGCATTTTTTTGTTCCTTGTATAAGATTTTGTATTGGGTCAGCGTATGGCATAGTGAAAACTTTCAACTGGTTATTTCTTCCCGAAATCAATTCACTGTTTTACATGTAAAATTTTGGGCTAGCTGTGTTTGCTAAACTAGTTCAGCTGATAATACTCGACTCATGACTTGAAAAGAAGATGGCAGTATTTTCCAGTATGTTAATTTTAGATGATCCAAGAGTTGAGCCATAATTCTGATCTAATTCCTAAGAATCTGAAATCTTCCTTACTTATTTGGTCCAGTTTGACCTCTTTAGTTCCTCCATCATTTTCTTAAGCCAAATCATCTCATAGATTCCAGGGTCAACCTTATGCTTGGTGTCCAAATTATATTTCGGGTTATGGTTTTCAAACTAAATGAACAGCTCATGTGTGGTTAGGGCTATCCCAAGGCTGTAAACCCCTCCAAGTCGACCACTCTGACATTATTCTTATCAAGGGAAAAAACGCATTCACTCCATAGGAAAAGAAAACCACTCTGACATGATTCGATGCTTGTTTTTGACCGTAGCTTAATTAAAGTGTGTATCTATGAGCTTGAGGCGATCAGCAGACTGAGAAAGTCAAGTGGAATGTATTTATATTTGATTAATGAACATTTTATTGATGAGGGACAGCACCAATACAATACTAGTGTATGTCAAGGTTAATAAGAGTGCAAGAAACTGAGTCACTTTGCTTAACATGTAGGAAACTGAAGAAGTCAAGTGAAGTATATTCATATTCATCTAAGCCAAAAATCTATTCAAAAGATATATTTGTATAATGTTTATTTACAAATATAGTATTTGGTTTATAATTCTCAAAAAATAAATAAATATAGTATTTGGTTATATTAGTTGTCTAGCAAATACATAAAAGATGAATGTAATTCTCCCACAAATGCTTTTGAAATGATGTAATTTCACATTCCTATCTAAAAGTATTAGTGTGTTTTCTTCTTTGATCCAATTTATACTTGTTGGATGATTGTAAAACACATGCATTTATGTTTGAATTCTATGTCAGCAGCAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGGGTAAGATGTTAAAGCTTTGCATGTTCCTCAAAAGTCTATATATTTTATATCAATTAGGATACATGCTATTGTCTATTGATGGAAATGATTGGACATTTGATGAGATCTAGCCTAGGAAAAAATTATATTCTAAACTTTTGACCATTTTCCATCCAAATTTTTCGTATTTGTTTGATTTTGATGAATCAATGGATCCTCGGCCTAACTTAACCTCAATAGCGCTCATGAGGGAACGATTGCTCGTGACCTTGTAAGGAGAGATCACAACTCATTCCCTCAACCAATGTTGGACGTAACACACCCCTATACACCTAGTACTGGACAACTGGAGCATGGAGAATATAAGGCGTCAAGAAAGTAGTCTATCCTTGTGGAGACACTCTTTTTTCTTGGTGAGAAATTAGTAGGAAAAGAGAAGAGAATTTGGAAATTAGTGTCTTAATTATTCCCTCAAGCTAATGGGATTAAATAGTGGTTACAAAAAAGGTATTAAGGTAAGAAACTGATAAAAATATTACACTATCTCCTGATTGCCTAATTATGAGGATTTGGCGATTCAACTCAAGCTATCTAATTATACAATATTTAACACTATATTGCTTTCATGGTGGGATATGCAAGTAGGAAAACAAGGGGAGGGATGCTCTGTCAGGGAGAAGCTATTGTTCCTTTACCATCTTGCAGTTGGTTAAGGGGCTGTATTACAGGCAATGTAGTTATCAATTGCCAAATGGTATAGCCCCTCCACTAGAAGGCTTGTCGTAGACTTGGTTAAACCTCTTAACTTCTAATGTTTTTTCTTTCTTATTGTCGTCTCAATTAACCGAGCACTCCAATTCTAAGATGTCTCGCGATGTTGGGCTAATCTTTGTCAGTGTTTGCCCCTGTTAAGGTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATA</genome_strand>
        <mrna_strand>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396256" ref_strand="+" ref_description="SGN-E396256 [TUS-40-K13](-)">
      <seq>ttcaggcagaattaaacgggggggaaaaatgaagctcttaaagatgtctgtaaatgacatgtgtaaagaagatgaagacagtgccaatcaactggtagaagactcatgtactattcaatatagcaagggaaaaagccccccccccccctattcttactttgcaaaaccaatgtcagcaactggatcaattctgctgcaggaataattgggtattgccaacatatcaagtctttccacttgagggtggatttcttgccaaggtcattgtaagagctgctgattccaaagttgtcagtagaagcaagatctgtgagagtccgcgcgaagcaagggaatccgctgctgcgcacgtgatttcaagctttcaaaagtgagagtccgcgtgaagcaagggagtctgctgctgcaaacatgaatgcaacgagtagctccgtggtagttcagaatccatagctttgcaaaggggctattactgctctttgcaagttgtaccaaagatcgaatctgtcttgccattttcccctgtaaactcaactcaaaacatgtactcataagttaaactgtgtaagaatgtgtaaacttatagattctagttatgaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="16109" stop="20216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16419" g_stop="16573" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="176" r_length="157" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017">
            <donor d_prob="0.999" d_score="0.78"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18591" g_stop="18657" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="243" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19550" g_stop="19916" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="610" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E396256" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16419" e_stop="16573"/>
          <exon e_start="18591" e_stop="18657"/>
          <exon e_start="19550" e_stop="19916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGAAAATGAAGCTCTTAAAGATGTCTGT-AATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGG-CTATTCTTACTTTGCAAAACCAATGTCAGGCAAGATGAGGCATCCAAATTTGACACATTATTTTTTTTCGCTTTCCTTATTTTCGGTCTGTCTTATTTTTCTTCTTGAGAATGGTAACTGTTAATCTCTATATCCACATGTATACTACATCAGAATATGTTGTCCCCCTTTAAAAGTATTACAACTTACAACTAGATCACCTATTTGTTGCTTTTCCTACAAATACTTTAGAACATCAAAGTAATCTTCTATTTGAGCTAACAGTTCCTGTTTAAACCAAAAGTAATAAAGAGCTAAGCAATTCGTCTTGAACCTCTGCAAATTGCTCTGCTTGTCCTCGAAACATCTTTTATTTATTTCTCTCCATGCTGTCCACCAAAAACATGCTGGGACAATTCCATATCTTCTCCTTTTATGCTCTCTGGCTTCACCTACCTAATCTTTCTCAGGCTGATGAACATCTTCCATAGCTGATCTGTCACTTGCATGTAAAAGAAGATGGTTATGTCTTAGCTTGCTCCCCATATAAGAAGCATCTAGAGCATATGTAAAACTTCTTTTGTTCAGATTCTCAGGGGTCTATGCTGCTTCCTTTGCCAAAAGTCAGGTAAAATAGTTCACTTTATAAGGAACTTTTGTTTTCTAAATCGTCTTCCACGAGCAACTTTCCTACTGAAGATTTGATAAGTTTAGGTCCTTATATGCTGAACTAACAGAGAAGAACAGCCCTTTGATATCTTTCTCCCATACCATAGTATCCCTTTCCCCAGATAAGCTATTGAAAGGTGAAAACTATGTTGTAGAAGGCTTCTATTCTTTCCATTTTGCTATCGTTCAAATGTCTTCAGTTCGTCCTCTGTTGTTGGAAATTTTCTTCATGTTTGATATTTGTAAGATTTCCTTTCCAATATATCGGAAGTCATTATTGAGACACATATTAGACATGCTTGTTTTATTGAACTAAGAAAGATGGAAGTACTTGTTTTGACTTGCATGCATTTTTTTGTTCCTTGTATAAGATTTTGTATTGGGTCAGCGTATGGCATAGTGAAAACTTTCAACTGGTTATTTCTTCCCGAAATCAATTCACTGTTTTACATGTAAAATTTTGGGCTAGCTGTGTTTGCTAAACTAGTTCAGCTGATAATACTCGACTCATGACTTGAAAAGAAGATGGCAGTATTTTCCAGTATGTTAATTTTAGATGATCCAAGAGTTGAGCCATAATTCTGATCTAATTCCTAAGAATCTGAAATCTTCCTTACTTATTTGGTCCAGTTTGACCTCTTTAGTTCCTCCATCATTTTCTTAAGCCAAATCATCTCATAGATTCCAGGGTCAACCTTATGCTTGGTGTCCAAATTATATTTCGGGTTATGGTTTTCAAACTAAATGAACAGCTCATGTGTGGTTAGGGCTATCCCAAGGCTGTAAACCCCTCCAAGTCGACCACTCTGACATTATTCTTATCAAGGGAAAAAACGCATTCACTCCATAGGAAAAGAAAACCACTCTGACATGATTCGATGCTTGTTTTTGACCGTAGCTTAATTAAAGTGTGTATCTATGAGCTTGAGGCGATCAGCAGACTGAGAAAGTCAAGTGGAATGTATTTATATTTGATTAATGAACATTTTATTGATGAGGGACAGCACCAATACAATACTAGTGTATGTCAAGGTTAATAAGAGTGCAAGAAACTGAGTCACTTTGCTTAACATGTAGGAAACTGAAGAAGTCAAGTGAAGTATATTCATATTCATCTAAGCCAAAAATCTATTCAAAAGATATATTTGTATAATGTTTATTTACAAATATAGTATTTGGTTTATAATTCTCAAAAAATAAATAAATATAGTATTTGGTTATATTAGTTGTCTAGCAAATACATAAAAGATGAATGTAATTCTCCCACAAATGCTTTTGAAATGATGTAATTTCACATTCCTATCTAAAAGTATTAGTGTGTTTTCTTCTTTGATCCAATTTATACTTGTTGGATGATTGTAAAACACATGCATTTATGTTTGAATTCTATGTCAGCAGCAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGGGTAAGATGTTAAAGCTTTGCATGTTCCTCAAAAGTCTATATATTTTATATCAATTAGGATACATGCTATTGTCTATTGATGGAAATGATTGGACATTTGATGAGATCTAGCCTAGGAAAAAATTATATTCTAAACTTTTGACCATTTTCCATCCAAATTTTTCGTATTTGTTTGATTTTGATGAATCAATGGATCCTCGGCCTAACTTAACCTCAATAGCGCTCATGAGGGAACGATTGCTCGTGACCTTGTAAGGAGAGATCACAACTCATTCCCTCAACCAATGTTGGACGTAACACACCCCTATACACCTAGTACTGGACAACTGGAGCATGGAGAATATAAGGCGTCAAGAAAGTAGTCTATCCTTGTGGAGACACTCTTTTTTCTTGGTGAGAAATTAGTAGGAAAAGAGAAGAGAATTTGGAAATTAGTGTCTTAATTATTCCCTCAAGCTAATGGGATTAAATAGTGGTTACAAAAAAGGTATTAAGGTAAGAAACTGATAAAAATATTACACTATCTCCTGATTGCCTAATTATGAGGATTTGGCGATTCAACTCAAGCTATCTAATTATACAATATTTAACACTATATTGCTTTCATGGTGGGATATGCAAGTAGGAAAACAAGGGGAGGGATGCTCTGTCAGGGAGAAGCTATTGTTCCTTTACCATCTTGCAGTTGGTTAAGGGGCTGTATTACAGGCAATGTAGTTATCAATTGCCAAATGGTATAGCCCCTCCACTAGAAGGCTTGTCGTAGACTTGGTTAAACCTCTTAACTTCTAATGTTTTTTCTTTCTTATTGTCGTCTCAATTAACCGAGCACTCCAATTCTAAGATGTCTCGCGATGTTGGGCTAATCTTTGTCAGTGTTTGCCCCTGTTAAGGTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAA</genome_strand>
        <mrna_strand>GGGGGAAAAATGAAGCTCTTAAAGATGTCTGTAAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGCCCCCCCCCCCCCTATTCTTACTTTGCAAAACCAATGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321110" ref_strand="+" ref_description="SGN-E321110 [cTOB-13-A16]">
      <seq>atgtctgtaatgacatgtgtaaagaagatgaagacagtgccaatcaactggtagaagactcatgtactattcaatatagcaagggaaaaagattgtccgaggctattcttactttgcaaaaccaatgtcagcaactggatcaattctgctgcaggaataattgggtattgccaacatatcaagtctttccacttgagggtggatttcttgccaaggtcattgtaagagctgctgattccaaagttgtcagtagaagcaagatctgtgagagtccgcgcgaagcaagggaatccgctgctgcgcacgtgatttcaagctttcaaaagtgagagtccgcgtgaagcaagggagtctgctgctgcaaacatgaatgcaacgagtagctccgtggtagttcagaatccatagctttgcaaaggggctattactgctctttgcaagttgtaccaaagatcgaatctgtcttgccattttcccctgtaaactcaactcaaaacatgtactcataagttaaactgtgtaagaatgtgtaaacttatagattctagttatgaagaaataccaactgttgtcgactcttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="16143" stop="20234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16443" g_stop="16573" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18591" g_stop="18657" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="198" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19550" g_stop="19934" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="583" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E321110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16443" e_stop="16573"/>
          <exon e_start="18591" e_stop="18657"/>
          <exon e_start="19550" e_stop="19934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAGGCAAGATGAGGCATCCAAATTTGACACATTATTTTTTTTCGCTTTCCTTATTTTCGGTCTGTCTTATTTTTCTTCTTGAGAATGGTAACTGTTAATCTCTATATCCACATGTATACTACATCAGAATATGTTGTCCCCCTTTAAAAGTATTACAACTTACAACTAGATCACCTATTTGTTGCTTTTCCTACAAATACTTTAGAACATCAAAGTAATCTTCTATTTGAGCTAACAGTTCCTGTTTAAACCAAAAGTAATAAAGAGCTAAGCAATTCGTCTTGAACCTCTGCAAATTGCTCTGCTTGTCCTCGAAACATCTTTTATTTATTTCTCTCCATGCTGTCCACCAAAAACATGCTGGGACAATTCCATATCTTCTCCTTTTATGCTCTCTGGCTTCACCTACCTAATCTTTCTCAGGCTGATGAACATCTTCCATAGCTGATCTGTCACTTGCATGTAAAAGAAGATGGTTATGTCTTAGCTTGCTCCCCATATAAGAAGCATCTAGAGCATATGTAAAACTTCTTTTGTTCAGATTCTCAGGGGTCTATGCTGCTTCCTTTGCCAAAAGTCAGGTAAAATAGTTCACTTTATAAGGAACTTTTGTTTTCTAAATCGTCTTCCACGAGCAACTTTCCTACTGAAGATTTGATAAGTTTAGGTCCTTATATGCTGAACTAACAGAGAAGAACAGCCCTTTGATATCTTTCTCCCATACCATAGTATCCCTTTCCCCAGATAAGCTATTGAAAGGTGAAAACTATGTTGTAGAAGGCTTCTATTCTTTCCATTTTGCTATCGTTCAAATGTCTTCAGTTCGTCCTCTGTTGTTGGAAATTTTCTTCATGTTTGATATTTGTAAGATTTCCTTTCCAATATATCGGAAGTCATTATTGAGACACATATTAGACATGCTTGTTTTATTGAACTAAGAAAGATGGAAGTACTTGTTTTGACTTGCATGCATTTTTTTGTTCCTTGTATAAGATTTTGTATTGGGTCAGCGTATGGCATAGTGAAAACTTTCAACTGGTTATTTCTTCCCGAAATCAATTCACTGTTTTACATGTAAAATTTTGGGCTAGCTGTGTTTGCTAAACTAGTTCAGCTGATAATACTCGACTCATGACTTGAAAAGAAGATGGCAGTATTTTCCAGTATGTTAATTTTAGATGATCCAAGAGTTGAGCCATAATTCTGATCTAATTCCTAAGAATCTGAAATCTTCCTTACTTATTTGGTCCAGTTTGACCTCTTTAGTTCCTCCATCATTTTCTTAAGCCAAATCATCTCATAGATTCCAGGGTCAACCTTATGCTTGGTGTCCAAATTATATTTCGGGTTATGGTTTTCAAACTAAATGAACAGCTCATGTGTGGTTAGGGCTATCCCAAGGCTGTAAACCCCTCCAAGTCGACCACTCTGACATTATTCTTATCAAGGGAAAAAACGCATTCACTCCATAGGAAAAGAAAACCACTCTGACATGATTCGATGCTTGTTTTTGACCGTAGCTTAATTAAAGTGTGTATCTATGAGCTTGAGGCGATCAGCAGACTGAGAAAGTCAAGTGGAATGTATTTATATTTGATTAATGAACATTTTATTGATGAGGGACAGCACCAATACAATACTAGTGTATGTCAAGGTTAATAAGAGTGCAAGAAACTGAGTCACTTTGCTTAACATGTAGGAAACTGAAGAAGTCAAGTGAAGTATATTCATATTCATCTAAGCCAAAAATCTATTCAAAAGATATATTTGTATAATGTTTATTTACAAATATAGTATTTGGTTTATAATTCTCAAAAAATAAATAAATATAGTATTTGGTTATATTAGTTGTCTAGCAAATACATAAAAGATGAATGTAATTCTCCCACAAATGCTTTTGAAATGATGTAATTTCACATTCCTATCTAAAAGTATTAGTGTGTTTTCTTCTTTGATCCAATTTATACTTGTTGGATGATTGTAAAACACATGCATTTATGTTTGAATTCTATGTCAGCAGCAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGGGTAAGATGTTAAAGCTTTGCATGTTCCTCAAAAGTCTATATATTTTATATCAATTAGGATACATGCTATTGTCTATTGATGGAAATGATTGGACATTTGATGAGATCTAGCCTAGGAAAAAATTATATTCTAAACTTTTGACCATTTTCCATCCAAATTTTTCGTATTTGTTTGATTTTGATGAATCAATGGATCCTCGGCCTAACTTAACCTCAATAGCGCTCATGAGGGAACGATTGCTCGTGACCTTGTAAGGAGAGATCACAACTCATTCCCTCAACCAATGTTGGACGTAACACACCCCTATACACCTAGTACTGGACAACTGGAGCATGGAGAATATAAGGCGTCAAGAAAGTAGTCTATCCTTGTGGAGACACTCTTTTTTCTTGGTGAGAAATTAGTAGGAAAAGAGAAGAGAATTTGGAAATTAGTGTCTTAATTATTCCCTCAAGCTAATGGGATTAAATAGTGGTTACAAAAAAGGTATTAAGGTAAGAAACTGATAAAAATATTACACTATCTCCTGATTGCCTAATTATGAGGATTTGGCGATTCAACTCAAGCTATCTAATTATACAATATTTAACACTATATTGCTTTCATGGTGGGATATGCAAGTAGGAAAACAAGGGGAGGGATGCTCTGTCAGGGAGAAGCTATTGTTCCTTTACCATCTTGCAGTTGGTTAAGGGGCTGTATTACAGGCAATGTAGTTATCAATTGCCAAATGGTATAGCCCCTCCACTAGAAGGCTTGTCGTAGACTTGGTTAAACCTCTTAACTTCTAATGTTTTTTCTTTCTTATTGTCGTCTCAATTAACCGAGCACTCCAATTCTAAGATGTCTCGCGATGTTGGGCTAATCTTTGTCAGTGTTTGCCCCTGTTAAGGTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGA</genome_strand>
        <mrna_strand>ATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234279" ref_strand="+" ref_description="SGN-E234279 [cLEL-8-G16](-)">
      <seq>gtccgcgcgaagcaagggaatccgctgctgcgcacgtgatttcaagctttcaaaagtgagagtccgcgtgaagcaagggagtctgctgctgcaaacatgaatgcaacgagtagctccgtggtagttcagaatccatagctttgcaaaggggctattactgctctttgcaagttgtaccaaagatcgaatctgtcttgccattttcccctgtaaactcaactcaaaacatgtactcataagttaaactgtgtaagaatgtgtaaacttatagattctagttatgaagaaataccaactgttgtcgactcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="19322" stop="20237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19622" g_stop="19948" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E234279" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19622" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATAATGCTCAGCACC</genome_strand>
        <mrna_strand>GTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714003" ref_strand="+" ref_description="SGN-E714003 [FB10BA06]">
      <seq>caagtcacttcatatcaccacaaccttggttgacaccttctctggctgtgacagttccccgcaaactattcctacacaatatcactgtcccattctttgtactgctcattcgatctctctcatgtaaaggtccttgcagtgttcaaagggatacaagagactgaagtggtccttggattggagtattaccctctcagattctgttatgaaaatgctatgagaggccatgtatgttcacacaccatgtagcatagaagatgtttagcagacttgacacaatgagatattcgggagaagaaacaagcctttagtacttaccacttagagcagattatgcgtatgcaacatacgttgtgtgttatgtcatctgttcttagattttgaatttgattgatattggactaaagaaagtatagtttttctttcagtggttttacataagcattcctgtttttgttttctttagagttgattgtgaaatcggagcagaaagccatcaacttcactttaatttgatttagtggtctatgtcttcgcatggtggaagttcctgctcgaatttaagttcaaatcagagatgttaataacttcctctgttgggctatgtgtcaaatatttttcatttgatttttatctttactagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="21502" stop="20263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21202" g_stop="20564" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="658"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E714003" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21202" e_stop="20564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTA---T-ACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</genome_strand>
        <mrna_strand>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTATGTTCACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574125" ref_strand="+" ref_description="SGN-E574125 [33543]">
      <seq>cttgggttctctgcgatcgggattatagcaaaaccctagctcaaaaccctagaacaaaccaggaaggagcccatggcgtatcaacaacaccaatcacctaatcacaccggagacaacgacgacggaaagaatcgccggctctataacccttaccaagacctacaagttccaatcaaaacactttacaagcttcctacctcgcctgagtttctgtttcaggaagaatctgttgctcagcgtagatcatggggagagaatttaacgtactacactggtatcggttatctctctggtgctgttgtcggtgccggtaaaggatttgttgaaggtgtgaaagcttcagagccaggtgatactacgaagctcaggatcaatagaatcctgaatgcgtcgggtcatacaggccggaagtttggaaatcgagctggtgttattgggttgctttatgctgggatggagagtggaatggttgctattagggatacggatgatgttatcaacagcgtggttgctggcttggggactggtgcgttctacagggcggcttcggggctaaggtcagctgccgtggctggagttattggcggcgtcgttgttggcttgggggtaactggaaaacaggccgctaaaacgatatgtcccgatctaagatttgtgctggtttgcttttgcgatttatgacctcaatcttggtaccgttatttgtttcaaaaatttcgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="23876" stop="22556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23576" g_stop="22856" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E574125" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23576" e_stop="22856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTTCTCTGCGATCGGAAAAATAGCAAAACCCTAGCTCAAAGCCCTAGAACAAATCAGGAGGGAGCCCATGGCGTATCAAC-AC--CAATCATCTAATCACACCGGAGACAACGACGACGGCAAGAATCGACGGCTCTATAACCCTTACCAAGACCTACAAGTTCCAAGCAAAACACTTTACAAGCTTCCTACCTCACCTGAGTTTCTGTTTCAGGAAGAATCTATTGCCCAGCGTAGATCATGGGGAGAGAATTTGACTTATTACACTGGTATCGGTTATCTCTCTGGGGCCGTTGCCGGCGCTGGTAAAGGATTTGTTGAAGGTGTGAAAGCTTCGGAGCCTGGTGATACTATGAAGCTCAGGATCAATAGAATCCTGAATGCGTCGGGTCATACGGGCCGGAAGTTTGGAAATCGAGCTGGTGTTATTGGGTTGCTTTATGCTGGGATGGAGAGTGGAATGGTTGCTATTAGGGATACGGATGATGTTATCAATAGCGTGGTTGCTGGCTTGGGGACTGGTGCGTTCTACAGGGCGGCTTCGGGGCTGAGGTCAGCTGCCGTGGCTGGAGTTATTGGTGGCGTCGTTGTTGGCTTGGGAGTGACTGGAAAACAGG-CGCTAAAACGATACGTACCGATCTGAGATTTGTGCTGTGGTTTGCTTTTG-GATTTATGACCTCAATCTTGATAGCTGTTATTTGTTTCAAAAATTTTGATAA</genome_strand>
        <mrna_strand>CTTGGGTTCTCTGCGATCGGGATTATAGCAAAACCCTAGCTCAAAACCCTAGAACAAACCAGGAAGGAGCCCATGGCGTATCAACAACACCAATCACCTAATCACACCGGAGACAACGACGACGGAAAGAATCGCCGGCTCTATAACCCTTACCAAGACCTACAAGTTCCAATCAAAACACTTTACAAGCTTCCTACCTCGCCTGAGTTTCTGTTTCAGGAAGAATCTGTTGCTCAGCGTAGATCATGGGGAGAGAATTTAACGTACTACACTGGTATCGGTTATCTCTCTGGTGCTGTTGTCGGTGCCGGTAAAGGATTTGTTGAAGGTGTGAAAGCTTCAGAGCCAGGTGATACTACGAAGCTCAGGATCAATAGAATCCTGAATGCGTCGGGTCATACAGGCCGGAAGTTTGGAAATCGAGCTGGTGTTATTGGGTTGCTTTATGCTGGGATGGAGAGTGGAATGGTTGCTATTAGGGATACGGATGATGTTATCAACAGCGTGGTTGCTGGCTTGGGGACTGGTGCGTTCTACAGGGCGGCTTCGGGGCTAAGGTCAGCTGCCGTGGCTGGAGTTATTGGCGGCGTCGTTGTTGGCTTGGGGGTAACTGGAAAACAGGCCGCTAAAACGATATGTCCCGATCTAAGATTTGTGC--TGGTTTGCTTTTGCGATTTATGACCTCAATCTTGGTA-CCGTTATTTGTTTCAAAAATTTCGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705575" ref_strand="+" ref_description="SGN-E705575 [FA27CB10]">
      <seq>tacagccagagtgtaaaccaccattacagcagaaggtctcaacagtactgggataagttctacaagctccacaaaaacaagtttttcaaggaccgacactacttagagaaggattggggaagatattttgatgatgaaattgaatcttccaatgggaaggttgttctagaggtgggctgtggagcgggtaatacgatttttcctctcatagctacgtttccgaagctctatgttcacgcctgtgatttctcagctaaagcagtaaccctctttaagtcgcatgcaaattacagttcagaaaagattaatgtctttgtctgtgatgctgcaatggatgatctctgtgctaatgtcatgccttttaccgttgatgttgtaaccttggtaagtgaagggagtaagtaatgataatcatatctgaatatgtattaagtgattaaagcatagtgttcacctaaaagcaatttaataaaccatatatccttccttcgggaaaaatgtatgcctacatgagcatctaactcctttaagtagatatttacattgtctgcagtttcaccatgcaagatggcttcaattctggagaactgtaagcaagtactaaagccaaatggtcacattcttttacgagattatgcagttggtgattctgctcaggtgaaactgcatgacagaaaccagatgattagtgagaacttttacttccgaggagatggaacttgttcgttttacttttccgagacttacgcgtcaaccttgtttcaaagtgctggttttgcaattgtggatattaacacgtactgcaaggaaattacgaaccattctcagaatattaccatgcagaggcgctggatacgtggcatatttggtcgttcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="25060" stop="28799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25360" g_stop="25440" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25441" i_stop="25695" i_length="255">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25696" g_stop="25785" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="171" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25786" i_stop="25860" i_length="75">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25861" g_stop="25965" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="276" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25966" i_stop="26991" i_length="1026">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26992" g_stop="27321" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="606" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27322" i_stop="27425" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27426" g_stop="27476" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="657" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27477" i_stop="27792" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27793" g_stop="27855" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="720" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27856" i_stop="27941" i_length="86">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27942" g_stop="28066" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="845" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28067" i_stop="28462" i_length="396">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28463" g_stop="28499" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="882" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E705575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25360" e_stop="25440"/>
          <exon e_start="25696" e_stop="25785"/>
          <exon e_start="25861" e_stop="25965"/>
          <exon e_start="26992" e_stop="27321"/>
          <exon e_start="27426" e_stop="27476"/>
          <exon e_start="27793" e_stop="27855"/>
          <exon e_start="27942" e_stop="28066"/>
          <exon e_start="28463" e_stop="28499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAGGTATTAAGCTCCGGCCTTGTCAAAACAAGTTTAAAAAGAAATTCAAATCTTCGATGTTATCTCGAGTAACTGGTAAAGTTGTTTGTAATGTGACCGGGACCAGGTAAACAGCCTCTTGCAGAAATGCAAGGTAAGGTTGCATAGATCTTATAGTTCAGTTCTTCCCTGGACCCTGTGTATACTGGGAGTTTTTAGTGCACCGAGCTGCTCTTTTATAATTTTGAATTCAGTGACGTACATTTGCACTTTGGGCAGTTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAGGTAATTTCACTGGTGCTGTAAATGCATCTTACTGTAGTAGTATTTCCCTGAGTTCAACTGAATAGATATTGGCAGGTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCGTTAAGGTTTGTCAACTTTCTTATGTTATGCTTTCATCAATAGTAACCTAGTTTAATCATACTATTCCCTAGACGTTGAACAAATATTCGTAAAGAATCAGCTTTTAGCTACAAGTTATACTACAACAACAGTGTAATCTCACGAATTCGATCTGGGGAGGGTGGTGTGAACGCAGTGTTACCCCTGGCTTTTGGCTACAAGTTATAGTATTTTGGAATTTGTTGGTATTTGCTCTGTCACTGTTTAACGGCTAAGGAGTCCTTCCAATATGGTATGAGTCGTATGAAAAGTAAGTAGATTTGACACGACTCATCATCCGAAAAATGCTACAATTTACTGCTGAAAGAGTAAGGTCCTCAATGGAACTCTATGTCGATCATATCTAAATGTTCTTCTTTTGCGTAGAGGAATTTTTTCACATCTTTGAGATCTTTCATCTGCAACTTTCTAAAATCATTACCAGTAGTAAAAGTATTTTAAGTGTTATGGTTACTTTACGCCTATTGCATTGCCTGTAATCTTGTTGGGATCTCAGTCAGTACACTGGTCGTTTTATCTTAGATTAGCTGCTATATCAGTTTCTTTTCTCTGATTTTTTTTAGCTTCCATTAAATTAGTCTACTTGTTAAGATCAGCAAACTTAAAATATCTCATTTCTTATTCATCACTTTGTCATTTGCATTTAAGTTTACAATATTTCACCTGCATTGCATTTACTGTAATTTGCTTAGGATTTCATTGAGCATCTACATTGTTCCCTCGATGACTCTCTGTAATTTCAATTTTTGTTCTTCAAATTTGTGAGCTTCCATTTGATAAGTCTGTTAACCTCTTGGACTGCTACGAAAAACAGCATCGGATTTCTTGCATTTAATTAATATGTCTGAGGAACTATGCTTGTTCTCTATCGTACAACAAACTCAAAAGTATAATCCTTGCTTTTCTATGACATGATTGTGGCGTAAAGCTACTTATCCTATATGATGGAGTCCCGTGCAAACTCCTAAGTCTCTTTATCATATATGATGCAGTCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCGTATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAGGTAATACATGAGCTATGGAGATGTCTTACCTCATTTTCTTTTTTCTTTCTCTATTATTTGATAATTCAATGGGTGTGCTATGCTATTGCGATCTCATTTTGCAGCCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAGGTAAAGCCCTGTATGTGTAGCCTTTGAACCTTCATATATAAATGATGACGCGAGAGAATTCCCCATGTCTAGCTTCTTCTTTTCCTGAAAGCAGAGTTACATGCTTAACATGAAATAGGTTGAACGTATGAAATACATGAGACAAGAAAAAAAAAGCAATTTCTTTTCCCAGGGGTCTAAAAGAGAGAAAATGGATATGTATAGTCATTCATCTTATAAATTGTTGAAGGCTAAGATTAGGTATTTCTTCACTGTTCTTCGAGTCTGGAACTGCAAGCAATTTTTTGTCATGGAATTTACGCTACGAATGTTTCAGGTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACTGTAAGTATTTTTCCGGGTTTGTTGGGTTATACATGATGTCCCACTGTTATATCAACTTTAATCAAATCCTGTAATTATGGTCTCAGTGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAGGTATATCTCTTTTGATTCCTTTTCCTCGACTGATTGTACTATCATCTTCTATTAAAAAGGGAACATGATTTCTTTAATCAACAAAGTAGAGATCATCCTTGTTGTCATTAGTTTTTCTGAATAATTAAGCTTATTTACTTCAATAGATCTTTGTTCTATTGATATCTACCGAAATTAAGTTAGATATTGGACATGAGTACCTAGTTTCGGAGGAAATGTAAGATGAATGATCGTAGAAAAGCATTACTTTGGTAGTAGTATATTGATATATTCACATGTATTTGCTCTGTTAAATGCTCTACTAGACTACTGCCTCCTAAAACTTTTGTATTCTGAACCTAAGAATTCAAGATTTTTCACTCTCCTGTGCCTTAAAATGTGCTTACATATGGTTAGGCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</genome_strand>
        <mrna_strand>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAG...............................................................................................................................................................................................................................................................TTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAG...........................................................................GTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCATATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAG........................................................................................................CCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAG............................................................................................................................................................................................................................................................................................................................GTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACT......................................................................................TGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341620" ref_strand="-" ref_description="SGN-E341620 [cTOE-23-C16]">
      <seq>agtgtagggccactagtaatttcatcatctggaagagcaactatggtattactaacctttctatctaaactcctttcttccaaacttatgaccttggcaactatttgtccattgtcaataccctcaatttcaacagcaattggcaagctcaactgcaagctagcgcccagtggcaacaactcctcgccattaattccacatggatcctctccaacagataaaatctcatcttcatcacttccctgaatgatgctatcgctaacaatcaggccattttcagctcccaatacagtctgcggcagactacattttccagagctttctcctagggtcaacaagggaactctaccaacatcaactttcataccgttgctttttccatcccaactggtatttgactcagcatgcaacaaagatgtaggatcaacaaaaacccttttaccaaaacaccttgcagctacagcccctttacaagattttattttctttttttctttgtgatacacatgagagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33755" stop="31583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33455" g_stop="33026" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045">
            <donor d_prob="0.667" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31980" g_stop="31885" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="524" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E341620" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341620" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33455" e_stop="33026"/>
          <exon e_start="31980" e_stop="31885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAAGTAAGCTAGCTGTGTCAGTCACTAATTTGAGCCTTGTGATTTCTACATGGTTCGAAATTGCAGGGTTATCACAGATAGAGCTGCTTAAGCTGAGTGTAACAGCAACAGCTGGAGACATCTCTTCCATTAATTCTTTCTAGTGAAAACAATATGCAATTGAGTCAACCGCGTTAGTCCGTGCAGCACTACCAGCAACAAATTGTTCCAAGCTTTATGTTTCACAGAGTAGGACTGCTTTAGAAGGGAACTCACAAGTGCGATAAAATAGCTAAATTGAATCCACAATGAAATGAGCTAGGAATCCACAAAAATGTGCAAGACAGCTAAATTATAAGCACAGGGAGAACGAGGTAGGAATCCACAAAAATGGGGAGAGATAAAAATTGAATGAGGCAAGTAGATCTCAGTCAACAGCTCACTACTAGAAGTAAAGGGTACACTACCAACATCATAGAAAAGGTGGAACAAGCTCCAGATAAGTGAGACTAACAAGAGTGTGAAGGAGATCTGTTGCTATAAACAGATCTGTAGATGGCACGTCCTAGACTGAGAACAGTTGGGGGGACCTTTCTTGTACCTGGAACTAAAAAATCATGCAATTATATCTCTCTCTTCAAGAGAAGAAACAGGACTAAGAAGAGCAAATCTTAGCTCCACCACCACCAACCCTTAAATACACAAGAAAATGGGGAAAACGACAAAATCAAACCCTTATCCATGAATTGAAGAAGTGAAAGTGAAAGAATCATGGAAAAGAACCTAGTAATGGGAAGAAAACAGACAACTAATCAAGAATCACATGAAAAAACCCTAAAAAGATACAACCTTTTTGCCACATGTAACTTGGGTTTCATGGATCTGAGGCAACTCATGTCCACCTCTCAAAATACAGGTCATTTACTAAATATACTCTTCTTCTTCCTCCAACCCAACAGATAAAAATTGAATCTTTAAGCAACAAACCATTCAACAACATAAAAAAAAAAAAAAAGGTCCTACTTACAATAAATTCAACTAAAACAGTAACAAAAGTAAGCTTACCAACAAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTTTTCTTTGTGATACACATGAGAGAGAACAAAAAT</genome_strand>
        <mrna_strand>AGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATC--AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTTTTCTTTGTGATACACATGAGAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738667" ref_strand="+" ref_description="SGN-E738667 [LC14CB07]">
      <seq>cataaagaaaaaaagaaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggttaaagggtttttgttggtaagcttaattttgttactgttttagttgaatttattaagtaggactgcttttttattttttttatgttgttgaatggtttgttgcttaaagattcaatttttatctgttgggttggaggaagaagaagagtatatttagtaaatgacctgtattttgagaggtggacatgagttgcctcagatccatgaaacccaagttacatgtggcaaaaaggttgtatctttttagggttttttcatgtgattcttgattagttgtctgttttcttcccattactaggttcttttccatgattctttcactttcacttcttcaattcatggataagggtttgattttgtcgttttccccattttcttgtgtatttaagggttggtggtggtggagctaagatttgctcttcttagtcctgtttcttctcttgaagagagagatataattgcatgattttttagttccagggacaagaaaggtccccccaactgttctcagtctaggacgtgccatctacagatctgtttatagcaacagatctccttcacactcttgttagtctcacttatctggagcttgttccaccttttctatgatgttggtagtgtaccctttacttctagtagtgagctgttgactgagatctacttgcctcattcaatttttatctctccccatttttgtggattcctacctcgttctccctgtgcttataatttagctgtcttgcacatttttgtggattcctagctcatttcattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31609" stop="33046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31909" g_stop="32746" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E738667" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31909" e_stop="32746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGAC--CTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGG</genome_strand>
        <mrna_strand>CATAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTTAAAGGGTTTTTGTTGGTAAGCTTAATTTTGTTACTGTTTTAGTTGAATTTATT--AAGTAGGACTGCTTTTTTATTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGGACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325515" ref_strand="-" ref_description="SGN-E325515 [cTOC-15-C21]">
      <seq>ttgtccattgtcaataccctcaatttcaacagcaattggcaagctcaactgcaagctagcgcccagtggcaacaactcctcgccattaattccacatggatcctctccaacagataaaatctcatcttcatcacttccgtgaatgatgatatcgctaacaatcaggccattttcagctcccaatacagtgtgcggcagactacattttccagagctttctcctagggtcaacaagggaactctaccaacatcaactttcataccgttgctttttccatcccaactggtatttgactcagcatgcaacaaagatgtaggatcaacaaaaacccttttaccaaaacaccttgcagctacagcccctttacaagattttattttcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33651" stop="31616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33351" g_stop="33026" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045">
            <donor d_prob="0.667" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31980" g_stop="31916" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="389" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E325515" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325515" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33351" e_stop="33026"/>
          <exon e_start="31980" e_stop="31916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAAGTAAGCTAGCTGTGTCAGTCACTAATTTGAGCCTTGTGATTTCTACATGGTTCGAAATTGCAGGGTTATCACAGATAGAGCTGCTTAAGCTGAGTGTAACAGCAACAGCTGGAGACATCTCTTCCATTAATTCTTTCTAGTGAAAACAATATGCAATTGAGTCAACCGCGTTAGTCCGTGCAGCACTACCAGCAACAAATTGTTCCAAGCTTTATGTTTCACAGAGTAGGACTGCTTTAGAAGGGAACTCACAAGTGCGATAAAATAGCTAAATTGAATCCACAATGAAATGAGCTAGGAATCCACAAAAATGTGCAAGACAGCTAAATTATAAGCACAGGGAGAACGAGGTAGGAATCCACAAAAATGGGGAGAGATAAAAATTGAATGAGGCAAGTAGATCTCAGTCAACAGCTCACTACTAGAAGTAAAGGGTACACTACCAACATCATAGAAAAGGTGGAACAAGCTCCAGATAAGTGAGACTAACAAGAGTGTGAAGGAGATCTGTTGCTATAAACAGATCTGTAGATGGCACGTCCTAGACTGAGAACAGTTGGGGGGACCTTTCTTGTACCTGGAACTAAAAAATCATGCAATTATATCTCTCTCTTCAAGAGAAGAAACAGGACTAAGAAGAGCAAATCTTAGCTCCACCACCACCAACCCTTAAATACACAAGAAAATGGGGAAAACGACAAAATCAAACCCTTATCCATGAATTGAAGAAGTGAAAGTGAAAGAATCATGGAAAAGAACCTAGTAATGGGAAGAAAACAGACAACTAATCAAGAATCACATGAAAAAACCCTAAAAAGATACAACCTTTTTGCCACATGTAACTTGGGTTTCATGGATCTGAGGCAACTCATGTCCACCTCTCAAAATACAGGTCATTTACTAAATATACTCTTCTTCTTCCTCCAACCCAACAGATAAAAATTGAATCTTTAAGCAACAAACCATTCAACAACATAAAAAAAAAAAAAAAGGTCCTACTTACAATAAATTCAACTAAAACAGTAACAAAAGTAAGCTTACCAACAAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTTTT</genome_strand>
        <mrna_strand>TTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCGTGAATGATGATATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTGTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATC--AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324023" ref_strand="-" ref_description="SGN-E324023 [cTOC-3-C1]">
      <seq>actacagatgccttaagtgtagggccactagtaatttcatcatctggaagagcaactatggtattactaacctttctatctaaactcctttcttccaaacttatgaccttggcaactatttgtccattgtcaataccctcaatttcaacagcaattggcaagctcaactgcaagctagcgcccagtggcaacaactcctcgccattaattccacatggatcctctccaacagataaaatctcatcttcatcacttccctgaatgatgctatcgctaacaatcaggccattttcagctcccaatacagtctgcggcagactacattttccagagctttctcctagggtcaacaagggaactctaccaacatcaactttcataccgttgctttttccatcccaactggtatttgactcagcatgcaacaaagatgtaggatcaacaaaaacccttttaccaaaacaccttgcagctacagcccctttacaagattttattttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33770" stop="31618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33470" g_stop="33026" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045">
            <donor d_prob="0.667" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31980" g_stop="31918" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="506" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E324023" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324023" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33470" e_stop="33026"/>
          <exon e_start="31980" e_stop="31918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGATGCCTTAAGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAAGTAAGCTAGCTGTGTCAGTCACTAATTTGAGCCTTGTGATTTCTACATGGTTCGAAATTGCAGGGTTATCACAGATAGAGCTGCTTAAGCTGAGTGTAACAGCAACAGCTGGAGACATCTCTTCCATTAATTCTTTCTAGTGAAAACAATATGCAATTGAGTCAACCGCGTTAGTCCGTGCAGCACTACCAGCAACAAATTGTTCCAAGCTTTATGTTTCACAGAGTAGGACTGCTTTAGAAGGGAACTCACAAGTGCGATAAAATAGCTAAATTGAATCCACAATGAAATGAGCTAGGAATCCACAAAAATGTGCAAGACAGCTAAATTATAAGCACAGGGAGAACGAGGTAGGAATCCACAAAAATGGGGAGAGATAAAAATTGAATGAGGCAAGTAGATCTCAGTCAACAGCTCACTACTAGAAGTAAAGGGTACACTACCAACATCATAGAAAAGGTGGAACAAGCTCCAGATAAGTGAGACTAACAAGAGTGTGAAGGAGATCTGTTGCTATAAACAGATCTGTAGATGGCACGTCCTAGACTGAGAACAGTTGGGGGGACCTTTCTTGTACCTGGAACTAAAAAATCATGCAATTATATCTCTCTCTTCAAGAGAAGAAACAGGACTAAGAAGAGCAAATCTTAGCTCCACCACCACCAACCCTTAAATACACAAGAAAATGGGGAAAACGACAAAATCAAACCCTTATCCATGAATTGAAGAAGTGAAAGTGAAAGAATCATGGAAAAGAACCTAGTAATGGGAAGAAAACAGACAACTAATCAAGAATCACATGAAAAAACCCTAAAAAGATACAACCTTTTTGCCACATGTAACTTGGGTTTCATGGATCTGAGGCAACTCATGTCCACCTCTCAAAATACAGGTCATTTACTAAATATACTCTTCTTCTTCCTCCAACCCAACAGATAAAAATTGAATCTTTAAGCAACAAACCATTCAACAACATAAAAAAAAAAAAAAAGGTCCTACTTACAATAAATTCAACTAAAACAGTAACAAAAGTAAGCTTACCAACAAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTT</genome_strand>
        <mrna_strand>ACTACAGATGCCTTAAGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATC--AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321338" ref_strand="+" ref_description="SGN-E321338 [cTOB-23-P15]">
      <seq>gaaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggtaaaagggtttttgttggtaagcttacttttgttactgttttagttgaatttattgtaagtaggaccttttttttttttttttatgttgttgaatggtttgttgcttaaagattcaatttttatctgttgggttggaggaagaagaagagtatatttagtaaatgacctgtattttgagaggtggacatgagttgcctcagatccatgaaacccaagttacatgtggcaaaaaggttgtatctttttagggttttttcatgtgattcttgattagttgtctgttttcttcccattactaggttcttttccatgattctttcactttcacttcttcaattcatggataagggtttgattttgtcgttttccccattttcttgtgtatttaagggttggtggtggtggagctaagatttgctcttcttagtcctgtttcttctcttgaagagagagatataattgcatgattttttagttccaggtacaagaaaggtccccccaactgttctcagtctaggacgtgccatctacagatctgtttatagcaacagatctccttcacactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31623" stop="32835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31923" g_stop="32535" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E321338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31923" e_stop="32535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACC-TTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTT</genome_strand>
        <mrna_strand>GAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322763" ref_strand="+" ref_description="SGN-E322763 [cTOB-30-C3]">
      <seq>gaaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggtaaaagggtttttgttggtaagcttacttttgttactgttttagttgaatttattgtaagtaggaccttttttttttttttttatgttgttgaatggtttgttgcttaaagattcaatttttatctgttgggttggaggaagaagaagagtatatttagtaaatgacctgtattttgagaggtggacatgagttgcctcagatccatgaaacccaagttacatgtggcaaaaagggtgtattctttttagggtttttcatgtgattcttgattagntgtctggtttcttcccattactagggtcttttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31623" stop="32579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31923" g_stop="32279" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E322763" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31923" e_stop="32279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACC-TTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTA-TCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATG</genome_strand>
        <mrna_strand>GAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGGTGTATTCTTTTTAGGG-TTTTTCATGTGATTCTTGATTAGNTGTCTGGTTTCTTCCCATTACTAGGGTCTTTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314840" ref_strand="+" ref_description="SGN-E314840 [cTOA-20-H18]">
      <seq>aaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggtaaaagggtttttgttgcttggaacaatttgttgctggtagtgctgcacggactaacgcggttgactcaattgcatattgttttcactagaaagaattaatggaagagatgtctccagctgttgctgttacactcagcttaagcagctctatctgtgataaccctgcaatttcgaaccatgtagaaatcacaaggctcaaattagtgactgacacagctagcttactttcagatcctacatctttgttgcatgctgagtcaaataccagttgggatggaaaaagcaacggtatgaaagttgatgttggtagagttcccttgttgaccctaggagaaagctctggaaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31624" stop="33621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31924" g_stop="31984" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31985" i_stop="32816" i_length="832">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32817" g_stop="33321" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="566" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E314840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31924" e_stop="31984"/>
          <exon e_start="32817" e_stop="33321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGCTATTTTATCGCACTTGTGAGTTCCCTTCTAAAGCAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCT</genome_strand>
        <mrna_strand>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296745" ref_strand="-" ref_description="SGN-E296745 [cLEW-3-I17]">
      <seq>acagatagatacagaaccccagagtggcacacattccgattcaaacacactcttgacactttatttgacaggctccttctctctgggcaatggaagggccactacagatgccttaagtgtagggccactagtaatttcatcatctggaagagcaactatggtattactaacctttctatctaaactcctttcttccaaacttatgaccttggcaactatttgtccattgtcaataccctcaatttcaacagcaattggcaagctcaactgcaagatagcgcccagtggcaacaactcctcgccattaattccacatggatcctctccaacagataaaatctcatcttcatcacttccctgaatgatgctatcgctaacaatcaggccattttcagctcccaatacagtctgcggcagattacattttccagagctttctcctagggtcaacaagggaactctaccaacatcaactttcataccgttgctttttccatcccaactggtatttgactcagcatgcaacaaagatgtaggatcaacaaaaacccttttaccaaaacaccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33870" stop="31653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33570" g_stop="33026" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045">
            <donor d_prob="0.667" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31980" g_stop="31953" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="571" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E296745" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33570" e_stop="33026"/>
          <exon e_start="31980" e_stop="31953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATAGATACAGAACCCCAGAGTGGCACACATTCCAATTCAAACACACTCTTGACACTTTCTTTGACAGGCTCCTTCTCACTGGGCAATGGAAGGGCCACTACAGATGCCTTAAGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAAGTAAGCTAGCTGTGTCAGTCACTAATTTGAGCCTTGTGATTTCTACATGGTTCGAAATTGCAGGGTTATCACAGATAGAGCTGCTTAAGCTGAGTGTAACAGCAACAGCTGGAGACATCTCTTCCATTAATTCTTTCTAGTGAAAACAATATGCAATTGAGTCAACCGCGTTAGTCCGTGCAGCACTACCAGCAACAAATTGTTCCAAGCTTTATGTTTCACAGAGTAGGACTGCTTTAGAAGGGAACTCACAAGTGCGATAAAATAGCTAAATTGAATCCACAATGAAATGAGCTAGGAATCCACAAAAATGTGCAAGACAGCTAAATTATAAGCACAGGGAGAACGAGGTAGGAATCCACAAAAATGGGGAGAGATAAAAATTGAATGAGGCAAGTAGATCTCAGTCAACAGCTCACTACTAGAAGTAAAGGGTACACTACCAACATCATAGAAAAGGTGGAACAAGCTCCAGATAAGTGAGACTAACAAGAGTGTGAAGGAGATCTGTTGCTATAAACAGATCTGTAGATGGCACGTCCTAGACTGAGAACAGTTGGGGGGACCTTTCTTGTACCTGGAACTAAAAAATCATGCAATTATATCTCTCTCTTCAAGAGAAGAAACAGGACTAAGAAGAGCAAATCTTAGCTCCACCACCACCAACCCTTAAATACACAAGAAAATGGGGAAAACGACAAAATCAAACCCTTATCCATGAATTGAAGAAGTGAAAGTGAAAGAATCATGGAAAAGAACCTAGTAATGGGAAGAAAACAGACAACTAATCAAGAATCACATGAAAAAACCCTAAAAAGATACAACCTTTTTGCCACATGTAACTTGGGTTTCATGGATCTGAGGCAACTCATGTCCACCTCTCAAAATACAGGTCATTTACTAAATATACTCTTCTTCTTCCTCCAACCCAACAGATAAAAATTGAATCTTTAAGCAACAAACCATTCAACAACATAAAAAAAAAAAAAAAGGTCCTACTTACAATAAATTCAACTAAAACAGTAACAAAAGTAAGCTTACCAACAAAAACCCTTTTACCAAAACACCTTGCA</genome_strand>
        <mrna_strand>ACAGATAGATACAGAACCCCAGAGTGGCACACATTCCGATTCAAACACACTCTTGACACTTTATTTGACAGGCTCCTTCTCTCTGGGCAATGGAAGGGCCACTACAGATGCCTTAAGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGATAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGATTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATC--AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCTTTTACCAAAACACCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440206" ref_strand="-" ref_description="SGN-E440206 [cSTA-15-L22]">
      <seq>tgtccattgtcaataccctcgatttcaacagcaattggcaagctcaactgtaagctagctcccagtggcaacaactcctcgccattaattccacatggatcctctccaacagataaaatctcatcttcatcactttcctgaatgatgctatcgctaacaatcaggcagttttcagctcccaatacagtctgcggcagactacattttccagagctttctcctagtgtcaacaagggaaccctaccaacgccaactttcataccgttgctatttccattccaactggtatttgactcagcatgcaacaaagatgcaggatcaacaaaaacccttttaccaaaacaccttgcagactctccctctacagccccttttaaagattttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33650" stop="31641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33350" g_stop="33026" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045">
            <donor d_prob="0.667" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31980" g_stop="31953" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="351" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E440206" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33350" e_stop="33026"/>
          <exon e_start="31980" e_stop="31953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAAGTAAGCTAGCTGTGTCAGTCACTAATTTGAGCCTTGTGATTTCTACATGGTTCGAAATTGCAGGGTTATCACAGATAGAGCTGCTTAAGCTGAGTGTAACAGCAACAGCTGGAGACATCTCTTCCATTAATTCTTTCTAGTGAAAACAATATGCAATTGAGTCAACCGCGTTAGTCCGTGCAGCACTACCAGCAACAAATTGTTCCAAGCTTTATGTTTCACAGAGTAGGACTGCTTTAGAAGGGAACTCACAAGTGCGATAAAATAGCTAAATTGAATCCACAATGAAATGAGCTAGGAATCCACAAAAATGTGCAAGACAGCTAAATTATAAGCACAGGGAGAACGAGGTAGGAATCCACAAAAATGGGGAGAGATAAAAATTGAATGAGGCAAGTAGATCTCAGTCAACAGCTCACTACTAGAAGTAAAGGGTACACTACCAACATCATAGAAAAGGTGGAACAAGCTCCAGATAAGTGAGACTAACAAGAGTGTGAAGGAGATCTGTTGCTATAAACAGATCTGTAGATGGCACGTCCTAGACTGAGAACAGTTGGGGGGACCTTTCTTGTACCTGGAACTAAAAAATCATGCAATTATATCTCTCTCTTCAAGAGAAGAAACAGGACTAAGAAGAGCAAATCTTAGCTCCACCACCACCAACCCTTAAATACACAAGAAAATGGGGAAAACGACAAAATCAAACCCTTATCCATGAATTGAAGAAGTGAAAGTGAAAGAATCATGGAAAAGAACCTAGTAATGGGAAGAAAACAGACAACTAATCAAGAATCACATGAAAAAACCCTAAAAAGATACAACCTTTTTGCCACATGTAACTTGGGTTTCATGGATCTGAGGCAACTCATGTCCACCTCTCAAAATACAGGTCATTTACTAAATATACTCTTCTTCTTCCTCCAACCCAACAGATAAAAATTGAATCTTTAAGCAACAAACCATTCAACAACATAAAAAAAAAAAAAAAGGTCCTACTTACAATAAATTCAACTAAAACAGTAACAAAAGTAAGCTTACCAACAAAAACCCTTTTACCAAAACACCTTGCA</genome_strand>
        <mrna_strand>TGTCCATTGTCAATACCCTCGATTTCAACAGCAATTGGCAAGCTCAACTGTAAGCTAGCTCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTTCCTGAATGATGCTATCGCTAACAATCAGGCAGTTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGTGTCAACAAGGGAACCCTACCAACGCCAACTTTCATACCGTTGCTATTTCCATTCCAACTGGTATTTGACTCAGCATGCAACAAAGATGCAGGATC--AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCTTTTACCAAAACACCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311141" ref_strand="+" ref_description="SGN-E311141 [cLEZ-16-N15]">
      <seq>tgtattttgagaggtggacatgagttgcctcagatccatgaaacccaagttacatgtggcaaaaaggttgtatctttttagggttttttcatgtgattcttgattagttgtctgttttcttcccattactaggttcttttccatgattctttcactttcacttcttcaattcatggataagggtttgattttgtcgttttccccattttcttgtgtatttaagggttggtggtggtggagctaagatttgctcttcttagtcctgtttcttctcttgaagagagagatataattgcatgattttttagttccaggtacaagaaaggtccccccaactgttctcagtctaggacgtgccatctacagatctgtttatagcaacagatctccttcacactcttgttagtctcacttatctggagcttgttccaccttttctatgatgttggtagtgtaccctttacttctagtagtgagctgttgactgagatctacttgcctcattcaatttttatctctccccatttttgtggattcctacctcgttctccctgtgcttataatttagctgtcttgcacatttttgtggattcctagctcatttcattgtggattcaatttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31835" stop="33058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32135" g_stop="32758" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E311141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32135" e_stop="32758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</genome_strand>
        <mrna_strand>TGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477462" ref_strand="+" ref_description="SGN-E477462 [cSTB-48-C20]">
      <seq>cagtcctactctgtgaaacataaagcttggaacaatttgttgctggtagtgctgcacggactaacgcggttgactcaattgcatattgttttcactagaaagaattaatggaggagatgtctccagctgttgctgttacactcagcttaagcagctctatctgtgataaccctgcaatttcgaaccatgtagaaatcacaaggctcaaattagtgactgacacagctagcttactttcagatcctgcatctttgttgcatgctgagtcaaataccagttggaatggaaatagcaacggtatgaaagttggcgttggtaggattcccttgttgacactaggagaaagctctggaaaatgtagtctgccgcagactgtattgggagctgaaaactgcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggagctagcttacagttgagcttgccaattgctgttgaaatcgaggacattgacaatggacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32492" stop="33654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32792" g_stop="33354" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E477462" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32792" e_stop="33354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATA</genome_strand>
        <mrna_strand>CAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAGGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTGCATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGAATGGAAATAGCAACGGTATGAAAGTTGGCGTTGGTAGGATTCCCTTGTTGACACTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAACTGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGAGCTAGCTTACAGTTGAGCTTGCCAATTGCTGTTGAAATCGAGGACATTGACAATGGACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317844" ref_strand="+" ref_description="SGN-E317844 [cTOA-30-L7]">
      <seq>aaagatcctacatctttgttgcatgctgagtcaaataccagttgggatggaaaaagcaacggtatgaaagttgatgttggtagagttcccttgttgaccctaggagaaagctctggaaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagtttagatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32730" stop="33874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33028" g_stop="33574" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E317844" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33028" e_stop="33574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAA</genome_strand>
        <mrna_strand>AAAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290959" ref_strand="+" ref_description="SGN-E290959 [cLET-8-I20]">
      <seq>ccttgttgaccctaggagaaagctctggaaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagtttagatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32816" stop="33836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33116" g_stop="33536" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E290959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33116" e_stop="33536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGA</genome_strand>
        <mrna_strand>CCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393236" ref_strand="+" ref_description="SGN-E393236 [TUS-38-A12]">
      <seq>gaaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32843" stop="33646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33143" g_stop="33346" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E393236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33143" e_stop="33346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATG</genome_strand>
        <mrna_strand>GAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208106" ref_strand="+" ref_description="SGN-E208106 [cLEC-34-D8]">
      <seq>aaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagtttagatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttgtggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32844" stop="34386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33144" g_stop="33735" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34086" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="647" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E208106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33144" e_stop="33735"/>
          <exon e_start="34032" e_stop="34086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAAC</genome_strand>
        <mrna_strand>AAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702868" ref_strand="+" ref_description="SGN-E702868 [FA19DF11]">
      <seq>gaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagttttgatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgaccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttatggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccactgcagttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32960" stop="34941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33260" g_stop="33735" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="809" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="915" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E702868" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33260" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG</genome_strand>
        <mrna_strand>GAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTTGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGACCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTATGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGG----A--C------T-A---A---G-----TCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACTGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480865" ref_strand="+" ref_description="SGN-E480865 [cSTD-15-H21]">
      <seq>cgaggtgagcttgccaattgctgttgaaatcgaggacattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagttttgatagaaaggttagtaataccatagttgctctcccagatgatgaaattactagtggccctacactaaaggcatctgtagtggcccttccatttcccagtgagaaagagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttatggctgttcctaattttatgaaaattcctatcaagatgtttattggtgatcgtgttattgatggactaagtcaaagtttgagtcacctgacatctcatttctacggagtatatgatggtcatggaggatctcaggttgcagattattgctgtaaacgtgttcatctagcattagttgaggagttaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggttcagtgggagaaggtctttactaattgctttctcaaggttgatgatgaagttggaggaaaagtgaacatagatctttgtgatgacaacatgaatacctctagctgcacctctgagcctattgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33000" stop="34505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33300" g_stop="33735" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34257" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="665" r_length="229" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E480865" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33300" e_stop="33735"/>
          <exon e_start="34032" e_stop="34257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGG-AAAG-G-TCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTC</genome_strand>
        <mrna_strand>CGAGGTGAGCTTGCCAATTGCTGTTGAAATCGAGGACATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTTGATAGAAAGGTTAGTAATACCATAGTTGCTCTCCCAGATGATGAAATTACTAGTGGCCCTACACTAAAGGCATCTGTAGTGGCCCTTCCATTTCCCAGTGAGAAAGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTATGGCTGTTCCTAATTTTATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTTATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTACGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCAGATTATTGCTGTAAACGTGTTCATCTAGCATTAGTTGAGGAGTTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTTCAGTGGGAGAAGGTCTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAAGTGAACATAGATCTTTGTGATGACAACATGAATACCTCTAGCTGCACCTCTGAGCCTATTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336899" ref_strand="+" ref_description="SGN-E336899 [cTOE-5-N3]">
      <seq>ccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagtttagatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttgtggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcangttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33013" stop="34409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33313" g_stop="33735" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34109" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="501" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E336899" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33313" e_stop="33735"/>
          <exon e_start="34032" e_stop="34109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGAT</genome_strand>
        <mrna_strand>CCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAN........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306195" ref_strand="+" ref_description="SGN-E306195 [cLEY-13-D23]">
      <seq>ttactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttgtggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33137" stop="34543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33437" g_stop="33735" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34243" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="511" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E306195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33437" e_stop="33735"/>
          <exon e_start="34032" e_stop="34243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTC</genome_strand>
        <mrna_strand>TTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703284" ref_strand="+" ref_description="SGN-E703284 [FA21AD01]">
      <seq>gtggcccttccattgaccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttatggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccactgcagttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccccgtgctagagaagatgaatgcctagtttttaccagtgacgggttgtgggatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33169" stop="36990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33469" g_stop="33735" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="624" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="730" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36579" g_stop="36690" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="842" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E703284" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33469" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
          <exon e_start="36579" e_stop="36690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGAT</genome_strand>
        <mrna_strand>GTGGCCCTTCCATTGACCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTATGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACTGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCCCGTGCTAGAGAAGATGAATGCCTAGTTTTTACCAGTGACGGGTTGTGGGATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268593" ref_strand="+" ref_description="SGN-E268593 [cLEI-13-L23]">
      <seq>cactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttgtggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccaccgcagttgtagcggtgatttgttcatctcatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33245" stop="34612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33545" g_stop="33735" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34312" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="472" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E268593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33545" e_stop="33735"/>
          <exon e_start="34032" e_stop="34312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTAT</genome_strand>
        <mrna_strand>CACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710668" ref_strand="+" ref_description="SGN-E710668 [FA56AG01]">
      <seq>cattttttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccactgcagttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctacacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33378" stop="37097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33673" g_stop="33735" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="420" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="526" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36579" g_stop="36797" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="745" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E710668" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33673" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
          <exon e_start="36579" e_stop="36797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTG</genome_strand>
        <mrna_strand>CATTTTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACTGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTACACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303760" ref_strand="+" ref_description="SGN-E303760 [cLEX-4-C4]">
      <seq>aaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccaccgcagttgtagcggcgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtttgccagaattgaagcatctggtggtgaggtcattcattggaatggacatcgtgtatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33374" stop="34915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33674" g_stop="33735" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="419" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34536" g_stop="34615" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="499" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E303760" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33674" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGG</genome_strand>
        <mrna_strand>AAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGCGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTTTGCCAGAATTGAAGCATCTGGTGGTGAGGTCATTCATTGGAATGGACATCGTGTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414707" ref_strand="+" ref_description="SGN-E414707 [STM-20-A23]">
      <seq>gttcatctagcattagttgaggagttaaaacttccaaacatgatttggtggatggaagtgtaagggatacccggcaggttcagtgggagaaggtctttactaattgctttctcaaggttgatgatgaagttggaggaaaggtgaacatagatctttgtgatgacaacatgaatacctctagctgcacctctgagcctattgccccagaaactgttgggtccactgcggttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcggtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatgggcatcgtgtatttggtgttcttgcaatgtcaagatctattggggacagatatttgaaaccatggattatacccgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgatggattgtgggatgtgatgacaaacgangaagcttgtgaagtggctagacgacgaattctgctgtggcacaaaaagaatgggactaaccctctgccggaaaggggccagggagtggatcctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33756" stop="37097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34056" g_stop="34388" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="441" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36579" g_stop="36797" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="660" r_length="219" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E414707" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34056" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
          <exon e_start="36579" e_stop="36797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGT---CATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTG</genome_strand>
        <mrna_strand>GTTCATCTAGCATTAGTTGAGGAGTTAAAACTT-CCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTTCAGTGGGAGAAGGTCTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTGAACATAGATCTTTGTGATGACAACATGAATACCTCTAGCTGCACCTCTGAGCCTATTGCCCCAGAAACTGTTGGGTCCACTGCGGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCGGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGGCATCGTGTATTTGGTGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACAGATATTTGAAACCATGGATTATACCCGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGATGGATTGTGGGATGTGATGACAAACGANGAAGCTTGTGAAGTGGCTAGACGACGAATTCTGCTGTGGCACAAAAAGAATGGGACTAACCCTCTGCCGGAAAGGGGCCAGGGAGTGGATCCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474317" ref_strand="+" ref_description="SGN-E474317 [cSTB-36-K1]">
      <seq>gttcatctagcattagttgaggagttaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggttcagtgggagaaggtctttactaattgctttctcaaggttgatgatgaagttggaggaaaggtgaacatagatctttgtgatgacaacatgaatacctctagctgcacctctgagcctattgccccagaaactgttgggtccactgcggttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="33756" stop="34641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34056" g_stop="34341" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E474317" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34056" e_stop="34341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGT---CATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAG</genome_strand>
        <mrna_strand>GTTCATCTAGCATTAGTTGAGGAGTTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTTCAGTGGGAGAAGGTCTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTGAACATAGATCTTTGTGATGACAACATGAATACCTCTAGCTGCACCTCTGAGCCTATTGCCCCAGAAACTGTTGGGTCCACTGCGGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605179" ref_strand="-" ref_description="SGN-E605179 [21092]">
      <seq>ggtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatcctggtggtaaggtcattcagtggaatgggcatcgtgtatttggtgttcttgcaatgtcaagatctattggggacagatatttgaaaccatggattatacccgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgatggattgtgggatgtgatgacaaacgaggaagcttgtgaagtggctagacgacgaattctgctgtggcacaaaaagaatgggactaaccctctgccggaaaggggccagggagtggatcctgctgcacaagcagcggcagagtatctttcatctatggctcttcaaaaaggtagcaaagacaatatatctgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagattacatgttcacccacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattcatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaaaaaaacagttaacaaacgacgtttatcccatttttttggtgtttgttgcgccagaaaatggctatgtaaatttgagcatgttttagcaatatcagaggtgcaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34221" stop="37471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34372" g_stop="34388" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="124" r_length="107" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36579" g_stop="37171" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="714" r_length="590" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E605179" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34372" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
          <exon e_start="36579" e_stop="37171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCAT-CTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCA-CTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAA-TTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCT</genome_strand>
        <mrna_strand>GGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCCTGGTGGTAAGGTCATTCAGTGGAATGGGCATCGTGTATTTGGTGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACAGATATTTGAAACCATGGATTATACCCGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGATGGATTGTGGGATGTGATGACAAACGAGGAAGCTTGTGAAGTGGCTAGACGACGAATTCTGCTGTGGCACAAAAAGAATGGGACTAACCCTCTGCCGGAAAGGGGCCAGGGAGTGGATCCTGCTGCACAAGCAGCGGCAGAGTATCTTTCATCTATGGCTCTTCAAAAAGGTAGCAAAGACAATATATCTGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATTACATGTTCACCCACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTCATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAG-A-AAAAAACAGTTAACAAACGACGTTTATCCCATTTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTTGAGCATGTTTTAGC-AATATCAGAGGTGCAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426563" ref_strand="-" ref_description="SGN-E426563 [STM-46-D22]">
      <seq>aacccaagcagagaagatgagtatgccagaattgaagcatctgtgggtaaggtcattcagtggaatgggcatcgtgtatttggtgtctttgcaatgtcaagatctattggtgacagatatttgaaaccatggattatacccgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggattgtgggatgtgatgacaaacgaggaagcttgtgaagtggctagacgacgaattctgctgtggcacaaaaagaatgggactaactctctgccggaaaggggccagggagtggatcctgctgcacaagcagcggcagagtatctttcatcgatggctcttcaaaaaggtagcaaagacaatatatctgtgattgtggtggaccttaaagctcacaggaaattcaaaagcaaaagttagagattacatgttctcacccacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattcatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaaaaaaacagttaacaaacgacgtttatccaaattttttggtgtttgttgcgccagaaaatgggtgtataaattgagcatgttccccaattgttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34234" stop="37444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34533" g_stop="34641" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36579" g_stop="37144" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="674" r_length="565" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E426563" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34533" e_stop="34641"/>
          <exon e_start="36579" e_stop="37144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATG-T-TCA-CTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTT</genome_strand>
        <mrna_strand>AACCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGTGGGTAAGGTCATTCAGTGGAATGGGCATCGTGTATTTGGTGTCTTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATTATACCCGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGATTGTGGGATGTGATGACAAACGAGGAAGCTTGTGAAGTGGCTAGACGACGAATTCTGCTGTGGCACAAAAAGAATGGGACTAACTCTCTGCCGGAAAGGGGCCAGGGAGTGGATCCTGCTGCACAAGCAGCGGCAGAGTATCTTTCATCGATGGCTCTTCAAAAAGGTAGCAAAGACAATATATCTGTGATTGTGGTGGACCTTAAAGCTCACAGGAAATTCAAAAGCAAAAGTTAGAGATTACATGTTCTCACCCACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTCATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAG-A-AAAAAACAGTTAACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGGTGTATAAATTGAGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576337" ref_strand="+" ref_description="SGN-E576337 [59540]">
      <seq>accaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatgggcatcgtgtatttggtgttcttgcaatgtcaagatctattggggacagatatttgaaaccatggattatacccgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgatggattgtgggatgtgatgacaaacgaggaagcttgtgaagtggctagacgacgaattctgctgtggcacaaaaagaatgggactaaccctctgccggaaaggggccagggagtggatcctgctgcacaagcagcggcagagtatctttcatctatggctcttcaaaaaggtagcaaagacaatatatctgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagattacatgttcacccacatttggttgagtataaatctgtacacggcgacgggtataaatctcattattacataagctcagtccattcatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaaaaaaacagttaacaaacgacgtttatcccattttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttttagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34236" stop="37454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34535" g_stop="34641" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36579" g_stop="37155" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="681" r_length="574" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E576337" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34535" e_stop="34641"/>
          <exon e_start="36579" e_stop="37155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCA-CTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAA-CTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATAT</genome_strand>
        <mrna_strand>ACCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGGCATCGTGTATTTGGTGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACAGATATTTGAAACCATGGATTATACCCGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGATGGATTGTGGGATGTGATGACAAACGAGGAAGCTTGTGAAGTGGCTAGACGACGAATTCTGCTGTGGCACAAAAAGAATGGGACTAACCCTCTGCCGGAAAGGGGCCAGGGAGTGGATCCTGCTGCACAAGCAGCGGCAGAGTATCTTTCATCTATGGCTCTTCAAAAAGGTAGCAAAGACAATATATCTGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATTACATGTTCACCCACATTTGGTTGAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAAGCTCAGTCCATTCATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAG-A-AAAAAACAGTTAACAAACGACGTTTATCC-CATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTTTAGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263077" ref_strand="-" ref_description="SGN-E263077 [cLEG-59-N23]">
      <seq>aagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacgacgtttatccaaattttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttgtagcaaatatcagaaatgcaatttcttaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34238" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34538" g_stop="34641" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36579" g_stop="37173" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="699" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="720"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E263077" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34538" e_stop="34641"/>
          <exon e_start="36579" e_stop="37173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</genome_strand>
        <mrna_strand>AAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267017" ref_strand="-" ref_description="SGN-E267017 [cLEI-4-C5]">
      <seq>agaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtcttatagaacaaaaaacagttgacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34244" stop="37379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34544" g_stop="34641" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36579" g_stop="37088" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="608" r_length="510" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E267017" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267017" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34544" e_stop="34641"/>
          <exon e_start="36579" e_stop="37088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTA</genome_strand>
        <mrna_strand>AGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTCTTATAGAACAAAAAACAGTTGACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320911" ref_strand="+" ref_description="SGN-E320911 [cTOB-13-G19]">
      <seq>tggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="34274" stop="37382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34574" g_stop="34641" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36579" g_stop="37082" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="572" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E320911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34574" e_stop="34641"/>
          <exon e_start="36579" e_stop="37082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGA</genome_strand>
        <mrna_strand>TGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414708" ref_strand="-" ref_description="SGN-E414708 [STM-20-A23]">
      <seq>agaagatgaatgcttagttttagccagtgatggattgtgggatgtgatgacaaaggaggaagcttgtgaagtggctagacgacgaattctgctgtggcacaaaaagaatgggactaaccttctgccggaaaggggccagggagtggatcctgctgcacaagcagcggcagagtatctttcatctatggctcttcaaaaaggtagcaaagacaatatatctgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagattacatgttcacccacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattcatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaaaaaaacagttaacaaacgacgtttatcccatttttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttttagcaatatcaggggtacaatttcttagttaaaaaaaaaaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36343" stop="37458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36643" g_stop="37173" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="543"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E414708" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414708" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36643" e_stop="37173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCA-CTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</genome_strand>
        <mrna_strand>AGAAGATGAATGCTTAGTTTTAGCCAGTGATGGATTGTGGGATGTGATGACAAAGGAGGAAGCTTGTGAAGTGGCTAGACGACGAATTCTGCTGTGGCACAAAAAGAATGGGACTAACCTTCTGCCGGAAAGGGGCCAGGGAGTGGATCCTGCTGCACAAGCAGCGGCAGAGTATCTTTCATCTATGGCTCTTCAAAAAGGTAGCAAAGACAATATATCTGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATTACATGTTCACCCACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTCATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAG-A-AAAAAACAGTTAACAAACGACGTTTATCCCATTTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTTTAGC-AATATCAGGGGTACAATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397345" ref_strand="+" ref_description="SGN-E397345 [TUS-45-F1](-)">
      <seq>tgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacgacgtttatccaaattttttggtgttagaggcgccagaaaatggctatgtaaattgagcatgtttagcgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36349" stop="37461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36649" g_stop="37166" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E397345" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36649" e_stop="37166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAA</genome_strand>
        <mrna_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTAGAGGCGCCAGAAAATGGCTATGTAAATTGAGCATGTT-TAGCGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397140" ref_strand="+" ref_description="SGN-E397140 [TUS-45-E1](-)">
      <seq>tgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattttgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacgacgtttatccaaattttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttgtagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36349" stop="37461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36649" g_stop="37166" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E397140" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36649" e_stop="37166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAA</genome_strand>
        <mrna_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTTTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397141" ref_strand="+" ref_description="SGN-E397141 [TUS-45-E1]">
      <seq>tgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36349" stop="37344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36649" g_stop="37044" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E397141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36649" e_stop="37044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTT</genome_strand>
        <mrna_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397346" ref_strand="+" ref_description="SGN-E397346 [TUS-45-F1]">
      <seq>tgaatgcctagttttattcagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36349" stop="37254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36649" g_stop="36960" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E397346" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36649" e_stop="36960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGC</genome_strand>
        <mrna_strand>TGAATGCCTAGTTTTATTCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324068" ref_strand="-" ref_description="SGN-E324068 [cTOC-3-C14]">
      <seq>aaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacgacgtttatccaaattttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttgtagcaaatatcagaaatgcaatttcttaaaaaaaaaaaaaaaaaaaaaactcggactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36472" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36772" g_stop="37173" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="424"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E324068" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36772" e_stop="37173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</genome_strand>
        <mrna_strand>AAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239642" ref_strand="+" ref_description="SGN-E239642 [cLED-23-P10]">
      <seq>ttttctggcgcaacaaacaccaaaaaatttggataaacgtcgtttgtcaactgttttttcttctataatacattgctaaaatactattctcatacacacaccttaagcccataggaaaaattaatggactgagttatgtaataatgagatttatacccgtcgccgtgtacagatttatactaaaccaaatgtagtgaacatgtcatctctaacttttgcttttgaacttcctgtgagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="37421" stop="36581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37121" g_stop="36881" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E239642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37121" e_stop="36881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGGCGCAACAAACACCAAAAAATTTGGATAAACGTCGTTTGTCAACTGTTTTTTCTTCTATAATACATTGCTAAAATACTATTCTCATACACACACCTTAAGCCCATAGGAAAAATTAATGGACTGAGTTATGTAATAATGAGATTTATACCCGTCGCCGTGTACAGATTTATACTAAACCAAATGTAGTGAACATGTCATCTCTAACTTTTGCTTTTGAACTTCCTGTGAGCTTT</genome_strand>
        <mrna_strand>TTTTCTGGCGCAACAAACACCAAAAAATTTGGATAAACGTCGTTTGTCAACTGTTTTTTCTTCTATAATACATTGCTAAAATACTATTCTCATACACACACCTTAAGCCCATAGGAAAAATTAATGGACTGAGTTATGTAATAATGAGATTTATACCCGTCGCCGTGTACAGATTTATACTAAACCAAATGTAGTGAACATGTCATCTCTAACTTTTGCTTTTGAACTTCCTGTGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689552" ref_strand="+" ref_description="SGN-E689552 [LH_Ea01D06]">
      <seq>catgtgaagctcaaaagccaaagttagagatgacatgttccctatatttggttcagtataaatctgtacacgcgcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtatgagaatagtatcttagcaatgtattatagaagaaaaaacagttaacaaacgacgtttatccaaattttttggtgtttgctgcgccagaacatggctatgtaaattgagcatgttgtagcaaatatcagaaatgcaatttcttagttcttccgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36589" stop="37492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36887" g_stop="37194" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E689552" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36887" e_stop="37194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACG-GCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATG</genome_strand>
        <mrna_strand>CATGTGAAGCTCAAAAGCCAAAGTTAGAGATGACATGTTCCCTATATTTGGTTCAGTATAAATCTGTACACGCGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATCTTAGCAATGTATTATAGAAGAAAAAACAGTTAACAAACGACGTTTATCCAAATTTTTTGGTGTTTGCTGCGCCAGAACATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTAGTTCTTCCGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693392" ref_strand="+" ref_description="SGN-E693392 [LH_Ea01D06](-)">
      <seq>ggaagttcaaaagcaaaagttagagatgacatgttcgctacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttaacaaacgacgtttatccaaattttttggtgtttgaagggccagaaaatggctatgtaaattgagcatgttgtctaaaagatcagaaatgcaatttcttagttcttccgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36591" stop="37492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36891" g_stop="37181" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="307"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E693392" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36891" e_stop="37181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCC</genome_strand>
        <mrna_strand>GGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCGCTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTAACAAACGACGTTTATCCAAATTTTTTGGTGTTTGAAGGGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTCTAAAAGATCAGAAATGCAATTTCTTAGTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617325" ref_strand="+" ref_description="SGN-E617325 [90802]">
      <seq>ggaagttcaaaagcaaaagttagagattacatgttcacccacatttggtttagtatagatctgtacacggcgacgggtataaatctcattattacataactcagtccattcatttttcctatgggcttaaggtgtgtatgagaatagtattttagcaatgtattatagaaaaaaacagttaacaaacgacgtttatcccatttttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttttagcaatatcagaggtgcaatttcttagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="36591" stop="37476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36891" g_stop="37173" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="283" polyA_stop="293"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E617325" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36891" e_stop="37173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCA-CTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</genome_strand>
        <mrna_strand>GGAAGTTCAAAAGCAAAAGTTAGAGATTACATGTTCACCCACATTTGGTTTAGTATAGATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTCATTTTTCCTATGGGCTTAA-G-GTGTGTATGAGAATAGTATTTTAGCAATGTATTATAG-A-AAAAAACAGTTAACAAACGACGTTTATCCCATTTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTTTAGC-AATATCAGAGGTGCAATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246308" ref_strand="+" ref_description="SGN-E246308 [cLEF-40-L15]">
      <seq>aaaagtgccaaacccaagtctttaaacaagcaaaattacaaagtgtccaaaagagctccttttagcctaaatcaatggcagatgatggggaagatatgaccccattttggctacaaaacaccaccaatctccgccgtactgagaggctacgccaccgggtgtcgtctctcttctttaacgcaggactgttgctcattattctgttgttggtgacggcgatcttctttgcagtttttgtagttccttcaacactatctatgtttaaaccaaccaatgtaaagaaaagctgggattctgttaatgtagtgttggttctagttgctgtgatttttggttttctcagcagaaacaacaatgaagataaaaatctcaatcaatatcaacgaacagcttctccgattaacagaaatcaagttcagaaatcgaatccatcaacaccaaatagtagatggtttagtgaagttcgaaatccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="39373" stop="40447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39673" g_stop="40147" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E246308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39673" e_stop="40147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</genome_strand>
        <mrna_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368384" ref_strand="+" ref_description="SGN-E368384 [TUS-23-L7]">
      <seq>aaaagtgccaaacccaagtctttaaacaagcaaaattacaaagtgtccaaaagagctccttttagcctaaatcaatggcagatgatggggaagatatgaccccattttggctacaaaacaccaccaatctccgccgtactgagaggctacgccaccgggtgtcgtctctcttctttaacgcaggactgttgctcattattctgttgttggtgacggcgatcttctttgcagtttttgtagttccttcaacactatctatgtttaaaccaaccaatgtaaagaaaagctgggattctgttaatgtagtgttggttctagttgctgtgatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="39373" stop="40305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39673" g_stop="40005" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E368384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39673" e_stop="40005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTG</genome_strand>
        <mrna_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704125" ref_strand="+" ref_description="SGN-E704125 [FA23BF11]">
      <seq>gtaagaaggagagagcaagtaaaaagagggaaaatcatgagcgagaagcaactaaaattattatggcaccggcgacgcttcctcctccaccaccacctccgccaccgccgcctccattaccacaatatgtggagccgaggagcagtaaaagtgatcggaaaagaggtggtgcaagtgcgacgaaggagtttataaactctttatatcacaaaaagaagagaaagaacagatcaaaaagtgttgataattttgatgctcttctctacaaatcagaaccacctcctctccattaccaacggccggcatcctccactccaccaccaccacctcctccgccaccgccaccaccttcttctctgtttcaaaacttattcacatccaaaaaggccagaaagagaaatgcacctccaccaccgccaccacctcctccgccagtcaaggcagtaccggttaggatatcaagaccaaatacccctttcaccagaactccagcaccaaagccagtgaaaataagaagcttcgacagtgtcgaagaaaacccaaacagcggaggagaatcgccgttgataccaattccaccaccacctccaccacccccattcttcagaaaacacgcctggaaattcgtagtacaaggcgactacttgagaatagacagcaccctcagctcacgttctgggtctcctgaacttgaagatatagattcagccgaaaacaccccgatggcagaagacgccggcgctggtgaagggatggcgtttgctccgtcaccattgttttgtccaagcccagatgtaaacacaaaagctgaaaacttcatatcaaaatttagagctggattaaagctagaaaaaatcaatcccttcaccaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="40270" stop="41750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40570" g_stop="41450" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E704125" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40570" e_stop="41450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAAGGAGAGAGCAAGTAAAAAGAGGGAAAATCATGAGCGAGAAGCAACTAAAATTATTATGGCACCGGCGACGCTTCCTCCTCCACCACCACCTCCGCCACCGCCGCCTCCATTACCACAATATGTGGAGCCGAGGAGCAGCAAAAGTGATCGGAAAAGAGGTGGTGCAAGTGCGACGAAGGAGTTTATAAACTCTTTATATCACAAAAAGAAGAGAAAGAACAGATCAAAAAGTGTTGATAATTTTGATGCTCTTCTCTACAAATCAGAACCACCTCCTCTCCATTACCAACGGCCGGCATCCTCCACTCCACCACCACCACCTCCTCCGCCACCGCCACCACCTTCTTCTCTGTTTCAAAACTTATTCACATCCAAAAAGGCCAGAAGAAAGAGAAATGCACCTCCACCACCGCCACCACCTCCTCCGCCAGTCAAGGCAGTACCGGTCAGGATATCAAGACCAAATACCCCTTTCACCAGAACTCCAGCACCAAAGCCAGTGAAAATAAGAAGCTTCGACAGTGTCGAAGAAAACCCAAACAGCGGAGGAGAATCGCCGTTGATACCAATTCCACCACCACCTCCACCACCCCCATTCTTCAGAAAACACGCCTGGAAATTCGTAGTACAAGGCGACTACTTGAGAATAGACAGCACCCTCAGCTCACGTTCTGGGTCTCCTGAACTTGAAGATATAGATTCAGCCGAAAACACCCCGATGGCAGAAGACGCCGGCGCTGGTGAAGGGATGGCGTTTGCTCCGTCACCATTGTTTTGTCCAAGCCCAGATGTAAACACAAAAGCTGAAAACTTCATATCAAAATTTAGAGCTGGATTAAAGCTAGAAAAAATCAATTCCTTCAACAAAAATGAT</genome_strand>
        <mrna_strand>GTAAGAAGGAGAGAGCAAGTAAAAAGAGGGAAAATCATGAGCGAGAAGCAACTAAAATTATTATGGCACCGGCGACGCTTCCTCCTCCACCACCACCTCCGCCACCGCCGCCTCCATTACCACAATATGTGGAGCCGAGGAGCAGTAAAAGTGATCGGAAAAGAGGTGGTGCAAGTGCGACGAAGGAGTTTATAAACTCTTTATATCACAAAAAGAAGAGAAAGAACAGATCAAAAAGTGTTGATAATTTTGATGCTCTTCTCTACAAATCAGAACCACCTCCTCTCCATTACCAACGGCCGGCATCCTCCACTCCACCACCACCACCTCCTCCGCCACCGCCACCACCTTCTTCTCTGTTTCAAAACTTATTCACATCCAAAAAGGCC---AGAAAGAGAAATGCACCTCCACCACCGCCACCACCTCCTCCGCCAGTCAAGGCAGTACCGGTTAGGATATCAAGACCAAATACCCCTTTCACCAGAACTCCAGCACCAAAGCCAGTGAAAATAAGAAGCTTCGACAGTGTCGAAGAAAACCCAAACAGCGGAGGAGAATCGCCGTTGATACCAATTCCACCACCACCTCCACCACCCCCATTCTTCAGAAAACACGCCTGGAAATTCGTAGTACAAGGCGACTACTTGAGAATAGACAGCACCCTCAGCTCACGTTCTGGGTCTCCTGAACTTGAAGATATAGATTCAGCCGAAAACACCCCGATGGCAGAAGACGCCGGCGCTGGTGAAGGGATGGCGTTTGCTCCGTCACCATTGTTTTGTCCAAGCCCAGATGTAAACACAAAAGCTGAAAACTTCATATCAAAATTTAGAGCTGGATTAAAGCTAGAAAAAATCAATCCCTTC-ACCAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574529" ref_strand="+" ref_description="SGN-E574529 [34011]">
      <seq>ataattttgatgctcttctccacaaatcagaaccacctactctccattaccaacggccggcatcctccactccaccaccgcctcctccgccaccgccaccaccttcttctctgtttcaaaacttattcacatccaaaaaggccagaaaaaagagaaatgcacctccaccaccgccaccacctcctccgccagtcaacgcagtaccggtcaggatatcaagaccaaatacccctttcaccagaactccagcaccaaagccagtgacaataagaagcttcgacagtgtcgaagaaaacccaaacagcggaggagaatcgccgttgataccaatgccaccaccacctccaccgcctccattcttcagaaaacacgcctggaaattcgtagtacaaggcgattacgtgagaatagacagcaccgtcagctcacgttctgggtcgcctgaacttgaagatatagattcagccgaaaacagcccgatggcggaagacgccggcgccggtgaacggatggcgtttgcaccgtcaccattattctgtccaagcccagatgtaaacacaaaagctgaaaacttcatatcaaaatttagagctggattaaagctagaaaaaatcaactccttcaacaaaaatgatcaacgacgaagcttatcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="40513" stop="41773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40813" g_stop="41473" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E574529" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40813" e_stop="41473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTGATGCTCTTCTCTACAAATCAGAACCACCTCCTCTCCATTACCAACGGCCGGCATCCTCCACTCCACCACCACCACCTCCTCCGCCACCGCCACCACCTTCTTCTCTGTTTCAAAACTTATTCACATCCAAAAAGGCCAGAAGAAAGAGAAATGCACCTCCACCACCGCCACCACCTCCTCCGCCAGTCAAGGCAGTACCGGTCAGGATATCAAGACCAAATACCCCTTTCACCAGAACTCCAGCACCAAAGCCAGTGAAAATAAGAAGCTTCGACAGTGTCGAAGAAAACCCAAACAGCGGAGGAGAATCGCCGTTGATACCAATTCCACCACCACCTCCACCACCCCCATTCTTCAGAAAACACGCCTGGAAATTCGTAGTACAAGGCGACTACTTGAGAATAGACAGCACCCTCAGCTCACGTTCTGGGTCTCCTGAACTTGAAGATATAGATTCAGCCGAAAACACCCCGATGGCAGAAGACGCCGGCGCTGGTGAAGGGATGGCGTTTGCTCCGTCACCATTGTTTTGTCCAAGCCCAGATGTAAACACAAAAGCTGAAAACTTCATATCAAAATTTAGAGCTGGATTAAAGCTAGAAAAAATCAATTCCTTCAACAAAAATGATCTAGGACGAAGCTTATCAAATCT</genome_strand>
        <mrna_strand>ATAATTTTGATGCTCTTCTCCACAAATCAGAACCACCTACTCTCCATTACCAACGGCCGGCATCCTCCACTCCACCACCGCC---TCCTCCGCCACCGCCACCACCTTCTTCTCTGTTTCAAAACTTATTCACATCCAAAAAGGCCAGAAAAAAGAGAAATGCACCTCCACCACCGCCACCACCTCCTCCGCCAGTCAACGCAGTACCGGTCAGGATATCAAGACCAAATACCCCTTTCACCAGAACTCCAGCACCAAAGCCAGTGACAATAAGAAGCTTCGACAGTGTCGAAGAAAACCCAAACAGCGGAGGAGAATCGCCGTTGATACCAATGCCACCACCACCTCCACCGCCTCCATTCTTCAGAAAACACGCCTGGAAATTCGTAGTACAAGGCGATTACGTGAGAATAGACAGCACCGTCAGCTCACGTTCTGGGTCGCCTGAACTTGAAGATATAGATTCAGCCGAAAACAGCCCGATGGCGGAAGACGCCGGCGCCGGTGAACGGATGGCGTTTGCACCGTCACCATTATTCTGTCCAAGCCCAGATGTAAACACAAAAGCTGAAAACTTCATATCAAAATTTAGAGCTGGATTAAAGCTAGAAAAAATCAACTCCTTCAACAAAAATGATCAACGACGAAGCTTATC-AATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688318" ref_strand="+" ref_description="SGN-E688318 [t3_tus_11_n20]">
      <seq>tttttttattcaaaatcacacttctttcataacttaggctagtcaagtactacatgaccaacttatcaactgcaacaaagaaacacaaaattaacaaatgttcaatccatagcggaagcttaagtgacctatgatagtttttttttttttaaacaatctctctattttctgtacactaataataactcaaatctcaaatgatgaacaaaaaaaatgacaactttaacaaatcaatcaatgtggtaaaaaaaaaatctaactgtggcctactcctgggccaaaatttgataagcttcgtccaaaatcatttttgttgaaggaattgattttttctagctttaatccagctctaaattttgatatgaagttttcagcttttgtgtttacatctgggcttggacaaaacaatggtgacggagcaaacgccatcccttcaccagcgccggcgtcttctgccatcggggtgttttcggctgaatctatatcttcaagttcaggagacccaaaacgtgagctgagggtgctgtctattctcaagtagtcgccttgtactacaaatttccaggcgtgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="42048" stop="40879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41753" g_stop="41179" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E688318" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41753" e_stop="41179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTC</genome_strand>
        <mrna_strand>TTTTTTTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAAAAAAAAATCTAACTGTGGCCTACTCCTGGGCCAAAATTTGATAAGCTTCGTCCAAAATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAAAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACAAATTTCCAGGCGTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550657" ref_strand="+" ref_description="SGN-E550657 [TUS-11-N20]">
      <seq>tttttttattcaaaatcacacttctttcataacttaggctagtcaagtactacatgaccaacttatcaactgcaacaaagaaacacaaaattaacaaatgttcaatccatagcggaagcttaagtgacctatgatagtttttttttttttaaacaatctctctattttctgtacactaataataactcaaatctcaaatgatgaacaaaaaaaatgacaactttaacaaatcaatcaatgtggtaaaaaaaaaatctaactgtggcctactcctgggccaaaatttgataagcttcgtcctaaatcatttttgttgaaggaattgattttttctagctttaatccagctctaaattttgatatgaagttttcagcttttgtgtttacatctgggcttggacaaaacaatggtgacggagcaaacgccatcccttcaccagcgccggcgtcttctgccatcggggtgttttcggctgaatctatatcttcaagttcaggagacccaaaacgtgagctgagggtgctgtctattctcaagtagtcgccttgtactacaaatttccaggcgtgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="42048" stop="40879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41753" g_stop="41179" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E550657" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41753" e_stop="41179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTC</genome_strand>
        <mrna_strand>TTTTTTTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAAAAAAAAATCTAACTGTGGCCTACTCCTGGGCCAAAATTTGATAAGCTTCGTCCTAAATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAAAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACAAATTTCCAGGCGTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273770" ref_strand="+" ref_description="SGN-E273770 [cLEN-7-D15]">
      <seq>ttttttattcaaaatcacacttctttcataacttaggctagtcaagtactacatgaccaacttatcaactgcaacaaagaaacacaaaattaacaaatgttcaatccatagcggaagcttaagtgacctatgatagtttttttttttttaaacaatctctctattttctgtacactaataataactcaaatctcaaatgatgaacaaaaaaaatgacaactttaacaaatcaatcaatgtggtaagaaaagaatctaactgtggcctactcctgggccgagatttgataagcttcgtcctagatcatttttgttgaaggaattgattttttctagctttaatccagctctaaattttgatatgaagttttcagcttttgtgtttacatctgggcttggacaaaacaatggtgacggagcaaacgccatcccttcaccagcgccggcgtcttctgccatcggggtgttttcggctgaatctatatcttcaagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="42048" stop="40958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41752" g_stop="41258" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E273770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41752" e_stop="41258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCA</genome_strand>
        <mrna_strand>TTTTTTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723474" ref_strand="+" ref_description="SGN-E723474 [FC20CD10]">
      <seq>ttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcatgcaaacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcaaaaatgcaaactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggtttgttattgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43843" stop="42802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43543" g_stop="43103" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43102" i_stop="42855" i_length="248">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42854" g_stop="42845" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="451" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E723474" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43543" e_stop="43103"/>
          <exon e_start="42854" e_stop="42845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATTGTTTTTCCTTTCTTTTTCTTTGAGTGCGTTCCAATTTTATAATGTCACTCTCTCTAATTCATATTAACTGAATTGTTTGAATACAACTAGTCTAAGCTTGAGTAACGAACAAGTACAAGTAGCACCTGAGTCGTGTTATGCACTGTCTTCAAAAACTATTTTTACGGTTTGGAAGTTTTTCTTGAATTAAACAAGTCTTCAAACAAAATTTCAAACTTATATAAAAGATGGTATAGTTATTATGATGCAGTGATATAATA</genome_strand>
        <mrna_strand>TTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCATGCAAACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAAAAATGCAAACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATTGT........................................................................................................................................................................................................................................................TAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352926" ref_strand="+" ref_description="SGN-E352926 [cTOS-11-H18]">
      <seq>acaaagaaatagagatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggtttgttattgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43903" stop="42803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43603" g_stop="43105" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="513"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E352926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43603" e_stop="43105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</genome_strand>
        <mrna_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733352" ref_strand="+" ref_description="SGN-E733352 [LB04CF01]">
      <seq>caataaatagagatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcatgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggtttgttattgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43900" stop="42802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43601" g_stop="43105" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="513"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E733352" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43601" e_stop="43105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</genome_strand>
        <mrna_strand>CAATAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCATGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345581" ref_strand="+" ref_description="SGN-E345581 [cTOF-18-C11]">
      <seq>gagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggtttgttattgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43886" stop="42802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43586" g_stop="43105" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="498"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E345581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43586" e_stop="43105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</genome_strand>
        <mrna_strand>GAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373584" ref_strand="+" ref_description="SGN-E373584 [TUS-33-C12](-)">
      <seq>gacaaagaaatagagatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttttaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43904" stop="42812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43604" g_stop="43111" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="507"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E373584" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43604" e_stop="43111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTT</genome_strand>
        <mrna_strand>GACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTTTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373585" ref_strand="+" ref_description="SGN-E373585 [TUS-33-C12]">
      <seq>acaaagaaatagagatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgtgtgttatgtgtacttcgagctttattgtttttacttaataattcagtggttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43903" stop="42812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43603" g_stop="43111" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="507"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E373585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43603" e_stop="43111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTT</genome_strand>
        <mrna_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300659" ref_strand="+" ref_description="SGN-E300659 [cLET-45-D18]">
      <seq>acaaagaaatagagatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagctctcactttcctatacttgtatcaccgngtgttatgtgtacttcgagctttattgattttacttaataattcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43903" stop="42815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43603" g_stop="43115" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E300659" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43603" e_stop="43115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTG</genome_strand>
        <mrna_strand>ACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGNGTGTTATGTGTACTTCGAGCTTTATTGATTTTACTTAATAATTCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283055" ref_strand="+" ref_description="SGN-E283055 [cLER-17-B14]">
      <seq>gatggagcattataactttgcccaaaagatcatgacattggctttgtttgccatagtgttaagtagtgttaatatagaggtggtacgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcagaccatcaatcacgccaccttatccgacagcacctacagcacagtgctgtaacgcgctgtctcgtgcagacatggcctgcctttgctcttacaaaaattcccagttattgccttctcttggaatcgatcctaacctcgcaattcagctccctcagaaatgcagactacctaatcctccccgttgctaaattaaagatgagtaattaaaagttgaaagcgtttgttacttgaataagcctcgttatgaaaattgacgctttctaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43890" stop="42891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43590" g_stop="43191" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E283055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43590" e_stop="43191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGC</genome_strand>
        <mrna_strand>GATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTACGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266102" ref_strand="+" ref_description="SGN-E266102 [cLEI-6-F3]">
      <seq>ggatcccccgggctgcagagatggagcattataacttcgcccaaattatcatgacattggctttgcttgcggtagtgttaagtagtgttaatatagaagtggtgcgggcacaaggaatatgcaacgtgtctggtgaatgattaatgtcctgcagaccatcaatcacgccaccttatccaacagtacctacagcacagtgctgttacgcgctagcttgtgcaaacatggcctgcctttgctcttacaaaaattaccagttattgccttttcttggaatctatcctaacctagcaattcagctccctcacaaatgcagactacctaatccttcccgttgctaaattacagatgagtaattaaaagttgaaagcgttggttacttgaataagcctcgttatgaaaattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43893" stop="42902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43591" g_stop="43202" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="408" r_length="390" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266102" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43591" e_stop="43202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGAC</genome_strand>
        <mrna_strand>AGATGGAGCATTATAACTTCGCCCAAATTATCATGACATTGGCTTTGCTTGCGGTAGTGTTAAGTAGTGTTAATATAGAAGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAATGATTAATGTCCTGCAGACCATCAATCACGCCACCTTATCCAACAGTACCTACAGCACAGTGCTGTTACGCGCTAGCTTGTGCAAACATGGCCTGCCTTTGCTCTTACAAAAATTACCAGTTATTGCCTTTTCTTGGAATCTATCCTAACCTAGCAATTCAGCTCCCTCACAAATGCAGACTACCTAATCCTTCCCGTTGCTAAATTACAGATGAGTAATTAAAAGTTGAAAGCGTTGGTTACTTGAATAAGCCTCGTTATGAAAATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266806" ref_strand="+" ref_description="SGN-E266806 [cLEI-7-B9]">
      <seq>aactttgcccaaaagatcatgacattggctttgttggccatagtgttaagtagtgttaatatataggtggtgcgggcacaaggaatatgcaacgtgtctggtgaaggattaatgtcatgcacaccatcaattacgccaccttatccgacagcacctacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="43877" stop="43117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43577" g_stop="43417" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266806" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43577" e_stop="43417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGC</genome_strand>
        <mrna_strand>AACTTTGCCCAAAAGATCATGACATTGGCTTTGTTGGCCATAGTGTTAAGTAGTGTTAATATATAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCACACCATCAATTACGCCACCTTATCCGACAGCACCTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414744" ref_strand="+" ref_description="SGN-E414744 [STM-20-G5]">
      <seq>caatcttttttttttgcagtatccaaagtgttattctctttaaggtcatataattcaaccaaataggtcgaattaaggcagtttccattgtgatgcaccaaagcaatgccaaaaataagcagactgttacacaaaacagagttccataaaaggactcgagttcatagtactctcaaaagtaatttagagcctctctccccaactctgccaacaacaaaatcaccatctggtcatttctatacggcaaattaatgacgataaagaaccaaatgctgacaaaaggagtacatattacaaacttactatgtttaaaactgagaacatatcatagcttggaattttggctcaacaaatagctcttcagaacatccataactgatccaaaatctgccttcacttccacaggtgggttagcaaaccgacattccatgtcttttatttccttcgagtggtaatcaatcttggattgagtaaacttcaatccatgagctgtactcacaaccacagtcctatcagttggtgcaatgactccactgtttctcagcttgaacagtgcagtcaatgccacaccagtatgtgggcaaatgaacatcccagtcgagtccgcctgagccatagcatccatcaactcctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="45630" stop="46835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45899" g_stop="46535" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E414744" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45899" e_stop="46535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTTCTAGCTGCAGTATCCGAAGTGA-ATTCTCTTTAAGGTCATATAATTTAACAAAACAGGTCAAATTAAGGCAGTTTCCATTGTGATGCACCAAAGCAATGCTACAAA-AAGCAGACTGTTACAAAAAACAGAGTTCCATAAAAGGACTCGAGTTCGTAGTACTCTCAAAAGTAATGTAGAGCCTTTCTCTCCCCAACTCTGCCAACAACAAAATCACCATCTGGTCATTTCTATACGGCAAATTAATGGCGATAAATGACCATATGCTGACAAAAGGAGTACATATTACAAACTTACTATGTTTAAAACTGACAACACATCATAGCTTGGAATTTTGGCTCAACAAATAGCTCTTCAGAACATCCATAACTGATCCAAAATCTGCTTTCACTTCCACAGGTGGGTTAGAAAACCGACATTCCATGTCTTTTATTTCCTTTGAGTGGTAATCAATCTTGGATTGAGTAAACTTCAATCCATGAGCTGTACTCACAACCACAGTCCTATCAGTTGGTGCAATGACTCCACTGTTTCTCAGCTTGAACAGCGCAGTCAATGCCACACCAGTATGCGGGCAAATGAACATCCCAGTGGAGTCTGCCTGAGCCATAGCATCCATCAACTCCTCCTC</genome_strand>
        <mrna_strand>CAATCTTTTTTTTTTGCAGTATCCAAAGTGTTATTCTCTTTAAGGTCATATAATTCAACCAAATAGGTCGAATTAAGGCAGTTTCCATTGTGATGCACCAAAGCAATGCCAAAAATAAGCAGACTGTTACACAAAACAGAGTTCCATAAAAGGACTCGAGTTCATAGTACTCTCAAAAGTAATTTAGAGCC--TCTCTCCCCAACTCTGCCAACAACAAAATCACCATCTGGTCATTTCTATACGGCAAATTAATGACGATAAAGAACCAAATGCTGACAAAAGGAGTACATATTACAAACTTACTATGTTTAAAACTGAGAACATATCATAGCTTGGAATTTTGGCTCAACAAATAGCTCTTCAGAACATCCATAACTGATCCAAAATCTGCCTTCACTTCCACAGGTGGGTTAGCAAACCGACATTCCATGTCTTTTATTTCCTTCGAGTGGTAATCAATCTTGGATTGAGTAAACTTCAATCCATGAGCTGTACTCACAACCACAGTCCTATCAGTTGGTGCAATGACTCCACTGTTTCTCAGCTTGAACAGTGCAGTCAATGCCACACCAGTATGTGGGCAAATGAACATCCCAGTCGAGTCCGCCTGAGCCATAGCATCCATCAACTCCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734738" ref_strand="+" ref_description="SGN-E734738 [LB13BH03]">
      <seq>ggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgaccgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatatggtcatttatcgccattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaatttgacctgttttgttaaattatatgaccttaaagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46941" stop="45631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46641" g_stop="45932" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="724"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E734738" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46641" e_stop="45932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</genome_strand>
        <mrna_strand>GGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACCGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467680" ref_strand="-" ref_description="SGN-E467680 [cSTB-1-D7]">
      <seq>gtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcgaaggaaataaaagacatggaatgtcggtttgctaacccacctgtggaagtgaaggcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatatgttctcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatttggttctttatcgtcattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaggctctaaattacttttgagagtactatgaactcgagtccttttatggaactctgttttgtgtaacagtctgcttatttttggcattgctttggtgcatcacaatggaaactgccttaattcgacctatttggttgaattatatgaccttaaagagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46727" stop="45631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46427" g_stop="45932" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="512"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E467680" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467680" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46427" e_stop="45932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTT-TTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</genome_strand>
        <mrna_strand>GTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCGAAGGAAATAAAAGACATGGAATGTCGGTTTGCTAACCCACCTGTGGAAGTGAAGGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATATGTTCTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATTTGGTTCTTTATCGTCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAG--AGGCTCTAAATTACTTTTGAGAGTACTATGAACTCGAGTCCTTTTATGGAACTCTGTTTTGTGTAACAGTCTGCTTATTTTTGGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTCGACCTATTTGGTTGAATTATATGACCTTAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211203" ref_strand="-" ref_description="SGN-E211203 [cLEC-70-F23]">
      <seq>aacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatatggtcatttatcgccattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaatttgaaaaaaaaaaaaaaaaaaaaaaatcgaaactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46937" stop="45665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="45965" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="696"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E211203" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211203" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="45965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGA</genome_strand>
        <mrna_strand>AACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733457" ref_strand="+" ref_description="SGN-E733457 [LB10AC07]">
      <seq>aggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgaccgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacataagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaatttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46831" stop="45665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46531" g_stop="46202" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46201" i_stop="46103" i_length="99">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46102" g_stop="45965" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="468" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="480"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E733457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46531" e_stop="46202"/>
          <exon e_start="46102" e_stop="45965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGA</genome_strand>
        <mrna_strand>AGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACCGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATA...................................................................................................AGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746304" ref_strand="+" ref_description="SGN-E746304 [GI|47104750]">
      <seq>cacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccatcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgctgagttgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacataagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaattgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48092" stop="45665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47792" g_stop="46202" g_length="1591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1591" r_length="1591" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46201" i_stop="46103" i_length="99">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46102" g_stop="45971" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1592" r_stop="1723" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1728" polyA_stop="1742"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E746304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1723</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47792" e_stop="46202"/>
          <exon e_start="46102" e_stop="45971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTA</genome_strand>
        <mrna_strand>CACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATA...................................................................................................AGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545536" ref_strand="+" ref_description="SGN-E545536 [TUS-68-G24](-)">
      <seq>catatatgcatttttaaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatatggtcatttatcgccattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47088" stop="45665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46788" g_stop="45971" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="831"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E545536" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46788" e_stop="45971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTA</genome_strand>
        <mrna_strand>CATATATGCATTTT-TAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605731" ref_strand="+" ref_description="SGN-E605731 [21658]">
      <seq>tatagaacagagctgtttttgccctgcagcaatgcaatgggatagtggaggaggcaaccgaggaggagttgatggatgctatggctcaggcggactcgactgggatgttcatttgcccacatactggtgtggcattgactgcactgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcgaaggaaataaaagacatggaatgtcggtttgctaacccacctgtggaagtgaaggcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatatgttctcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatttggttctttatcgtcattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaggctctaaaattactttttgagagtactatgaactcgagtccttttatggaactctgtttttgtgttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46893" stop="45721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46593" g_stop="46021" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E605731" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46593" e_stop="46021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAG-ACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCT-ACATTAC-TTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTT-TG-TAACA</genome_strand>
        <mrna_strand>TATAGAACAGAGCTGTTTTTGCCCTGCAGCAATGCAATGGGATAGTGGAGGAGGCAACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCGGACTCGACTGGGATGTTCATTTGCCCACATACTGGTGTGGCATTGACTGCACTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCGAAGGAAATAAAAGACATGGAATGTCGGTTTGCTAACCCACCTGTGGAAGTGAAGGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATATGTTCTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATTTGGTTCTTTATCGTCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAG--AGGCTCTAAAATTACTTTTTGAGAGTACTATGAACTCGAGTCCTTTTATGGAACTCTGTTTTTGTGTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230654" ref_strand="+" ref_description="SGN-E230654 [cLEL-35-B7](-)">
      <seq>ctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatatggtcatttatcgccattaatttgccgtatagaaatggccagatggtgattttgttgttggcagagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="46554" stop="45725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46254" g_stop="46025" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E230654" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46254" e_stop="46025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGT</genome_strand>
        <mrna_strand>CTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGGCCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288368" ref_strand="+" ref_description="SGN-E288368 [cLES-16-I21]">
      <seq>ttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47065" stop="45866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46765" g_stop="46166" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E288368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46765" e_stop="46166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATAT</genome_strand>
        <mrna_strand>TTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295119" ref_strand="+" ref_description="SGN-E295119 [cLET-20-E24]">
      <seq>agacggcagttatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaagcaacatatatgcattttataaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgccctgttcaagctgagaaacaggggagtcattgcaccaactgataggactgtggttgagagtacagctcatggattgaagtttactcaatccaagattgattaccactcaatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47170" stop="46037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46870" g_stop="46337" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E295119" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46870" e_stop="46337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAA</genome_strand>
        <mrna_strand>AGACGGCAGTTATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAAGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCCCTGTTCAAGCTGAGAAACAGGGGAGTCATTGCACCAACTGATAGGACTGTGGTTGAGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448898" ref_strand="+" ref_description="SGN-E448898 [cSTS-4-D18]">
      <seq>gtcaattgtatttctacctgcgaataagatatctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgctgagttgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaattgagattttgcagcagtttgattgggaagttccggagtgggtgatagttcctggtgggaacttgggcaacatatatgcattttataaaggttttcagatgtgcaaagagttggggcttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctttacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcaaacacaacatttgcgtctgctatacagattggtgatccggtgtctatagacagagctgtttttgccctgcagcaatgcaacgggatagtggaggaggcaaccgaggaggagttgatggatgctatggctcangcggactcgactgggatgttcatttgcccacatactggtgtggcattgactgcactgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47357" stop="46079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47058" g_stop="46379" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E448898" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47058" e_stop="46379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGAT</genome_strand>
        <mrna_strand>GTCAATTGTATTTCTACCTGCGAATAAGATATCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATTGAGATTTTGCAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTGATAGTTCCTGGTGGGAACTTGGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGGCTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTTTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCAAACACAACATTTGCGTCTGCTATACAGATTGGTGATCCGGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGCAATGCAACGGGATAGTGGAGGAGGCAACCGAGGAGGAGTTGATGGATGCTATGGCTCANGCGGACTCGACTGGGATGTTCATTTGCCCACATACTGGTGTGGCATTGACTGCACTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253181" ref_strand="+" ref_description="SGN-E253181 [cLEG-26-I16]">
      <seq>gttactgctgagttttctatttacttttcaaattcgttctatcgggggaggttgggagggcaaaagagggcaccaatcgacattttacagcagcttgattgggaaattccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttctcagatgtgcaaagagttgggacttgttgatcgcatccctaagcttgtttgtgctcaacctgccaacgctaatccactctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacaaattggtgacccaaagtctatagacatagctgtttttgccctgcagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47187" stop="46263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46934" g_stop="46563" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E253181" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46934" e_stop="46563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAAC</genome_strand>
        <mrna_strand>GTTACTGCTGAGTTTTCTATTTACTTTTCAAATTCGTTCTATCGGGGGAGGTTGGGAGGGCAAAAGAGGGCACCAATCGACATTTTACAGCAGCTTGATTGGGAAATTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTCTCAGATGTGCAAAGAGTTGGGACTTGTTGATCGCATCCCTAAGCTTGTTTGTGCTCAACCTGCCAACGCTAATCCACTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAAATTGGTGACCCAAAGTCTATAGACATAGCTGTTTTTGCCCTGCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211919" ref_strand="+" ref_description="SGN-E211919 [cLEC-66-C2]">
      <seq>tgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccatcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgctgagttgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47544" stop="46268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47244" g_stop="46568" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E211919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47244" e_stop="46568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGC</genome_strand>
        <mrna_strand>TGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214393" ref_strand="+" ref_description="SGN-E214393 [cLEC-77-G20]">
      <seq>tgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccatcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgctgagttgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47544" stop="46316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47244" g_stop="46616" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E214393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47244" e_stop="46616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTA</genome_strand>
        <mrna_strand>TGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311057" ref_strand="+" ref_description="SGN-E311057 [cLEZ-17-D6]">
      <seq>ctcgtgcctatattcggcactaggcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccagttgattcgtgaagttactgctgaattgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48051" stop="46471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47751" g_stop="47560" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="216" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47559" i_stop="46947" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46946" g_stop="46771" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="392" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E311057" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47751" e_stop="47560"/>
          <exon e_start="46946" e_stop="46771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAA</genome_strand>
        <mrna_strand>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCGTGAAGTTACTGCTGAATTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269205" ref_strand="+" ref_description="SGN-E269205 [cLEI-16-P15]">
      <seq>atttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccatcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggctcttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47872" stop="46626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47572" g_stop="46926" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E269205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47572" e_stop="46926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCT</genome_strand>
        <mrna_strand>ATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTCTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729209" ref_strand="+" ref_description="SGN-E729209 [LA20BC09]">
      <seq>cttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcttcggtgtggggtagtgcttctactgtagacacatgtgcggccatagacggcttactgtgcatctgcaggcattccggcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggtgcttttgtgttgagtattgacactgattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47715" stop="46658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47415" g_stop="46958" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E729209" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47415" e_stop="46958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGT-GTGCTTCTACTGGAGACACATCTGCGGCCCT-GTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATG</genome_strand>
        <mrna_strand>CTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCTTCGGTGTGGGGTAGTGCTTCTACTGTAGACACATGTGCGGCCATAGACGGCTTACTGTGCATCTGCAGGCATTCCGGCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGTGCTTTTGTGTTGAGTATTGACACTGATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724769" ref_strand="+" ref_description="SGN-E724769 [FC25AD12]">
      <seq>tggtcttctcagcttcacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttaatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccgtcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48111" stop="46663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47813" g_stop="46963" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E724769" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47813" e_stop="46963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTT</genome_strand>
        <mrna_strand>TGGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTAATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCGTCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730454" ref_strand="+" ref_description="SGN-E730454 [LA24AG05]">
      <seq>ctgttggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttaatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccgtcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatgggggcttttgtgttgagtattgacactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48082" stop="46663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47783" g_stop="46963" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E730454" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47783" e_stop="46963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAAT-GGGGCTTTTGTGTTGAGTATTGACACTGATTT</genome_strand>
        <mrna_strand>CTGTTGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTAATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCGTCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGGCTTTTGTGTTGAGTATTGACACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546385" ref_strand="+" ref_description="SGN-E546385 [TUS-69-L14]">
      <seq>caacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaatccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggccagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagcgatgatattgttagtgcttttgaagggaactccaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatctcgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcngccctgtcggcttactgtgcatctgcaggcattccgtcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48088" stop="46703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47788" g_stop="47003" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E546385" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47788" e_stop="47003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTA</genome_strand>
        <mrna_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAATCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGCCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGCGATGATATTGTTAGTGCTTTTGAAGGGAACTCCAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTCGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCNGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCGTCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409079" ref_strand="+" ref_description="SGN-E409079 [PPI-13-E15]">
      <seq>tctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatgcataaaccggttgtcgggtgtggggtgtgcttctactggagacacatctgcggcgctgtcggcttactgtgcatctgcaggcattccgtcaattgtatttctacctgcgaataaatatctatggcgcaactggttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48047" stop="46706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47747" g_stop="47006" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E409079" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47747" e_stop="47006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTC-GGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAAC</genome_strand>
        <mrna_strand>TCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATGCATAAACCGGTTGTCGGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCGCTGTCGGCTTACTGTGCATCTGCAGGCATTCCGTCAATTGTATTTCTACCTGCGAATAA-ATATCTATGGCGCAACTGGTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399843" ref_strand="+" ref_description="SGN-E399843 [cSTC-2-B20]">
      <seq>ctgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatgcataaaccggttgtcggtgtggggtgtgcttatactggaaacacatttgcggcgctgtcggcttactgtgcatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47886" stop="46767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47586" g_stop="47067" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E399843" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47586" e_stop="47067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCA</genome_strand>
        <mrna_strand>CTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATGCATAAACCGGTTGTCGGTGTGGGGTGTGCTTATACTGGAAACACATTTGCGGCGCTGTCGGCTTACTGTGCATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559191" ref_strand="+" ref_description="SGN-E559191 [18649]">
      <seq>ctcagcttcacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggatcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatgcataaaccggttgtcggtgtggggtgtgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48106" stop="46812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47806" g_stop="47112" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E559191" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47806" e_stop="47112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGG-TCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCT</genome_strand>
        <mrna_strand>CTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGATCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATGCATAAACCGGTTGTCGGTGTGGGGTGTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573792" ref_strand="+" ref_description="SGN-E573792 [33158]">
      <seq>tcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcggaaaatgcataaaccggttgtcggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48093" stop="46824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47793" g_stop="47124" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E573792" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47793" e_stop="47124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTG</genome_strand>
        <mrna_strand>TCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGGAAAATGCATAAACCGGTTGTCGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348288" ref_strand="+" ref_description="SGN-E348288 [cTOF-27-F7]">
      <seq>gcttacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48102" stop="46828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47802" g_stop="47128" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E348288" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47802" e_stop="47128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGG</genome_strand>
        <mrna_strand>GCTT-ACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448199" ref_strand="+" ref_description="SGN-E448199 [cSTS-2-C12]">
      <seq>gcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttgcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatgcataaaccggttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48077" stop="46829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47777" g_stop="47129" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E448199" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47777" e_stop="47129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCG</genome_strand>
        <mrna_strand>GCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTT-GCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATGCATAAACCGGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484868" ref_strand="+" ref_description="SGN-E484868 [cSTE-15-J17]">
      <seq>cctcgtgccgcaatcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcagcttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgacatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48098" stop="46843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47807" g_stop="47143" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E484868" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47807" e_stop="47143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCA</genome_strand>
        <mrna_strand>CCTC-GTGCCGCAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAGCTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGACATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407969" ref_strand="+" ref_description="SGN-E407969 [PPI-9-B19]">
      <seq>caacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcgcttgcggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48088" stop="46845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47788" g_stop="47145" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E407969" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47788" e_stop="47145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATG</genome_strand>
        <mrna_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGCTTGCGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481695" ref_strand="+" ref_description="SGN-E481695 [cSTD-19-K21]">
      <seq>acacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48091" stop="46853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47791" g_stop="47153" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E481695" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47791" e_stop="47153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGC</genome_strand>
        <mrna_strand>ACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348299" ref_strand="+" ref_description="SGN-E348299 [cTOF-27-J7]">
      <seq>gcttacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48102" stop="46859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47802" g_stop="47159" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E348299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47802" e_stop="47159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATC</genome_strand>
        <mrna_strand>GCTT-ACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406889" ref_strand="+" ref_description="SGN-E406889 [PPI-5-G6]">
      <seq>atgcttagatcctctttcatctctcctggacttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggagtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcagacagtttctaggcatgactgatttgtgggtcatacactgtgggattagccatactggtagtgttaaggatctttggatgactgttttggtgagtcaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48068" stop="46862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47768" g_stop="47162" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E406889" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47768" e_stop="47162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTA</genome_strand>
        <mrna_strand>ATGCTTAGATCCTCTTTCATCTCTCCTGGACTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGAGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAGACAGTTTCTAGGCATGACTGATTTGTGGGTCATACACTGTGGGATTAGCCATACTGGTAGTGTTAAGGATCTTTGGATGACTGTTTTGGTGAGTCAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591865" ref_strand="+" ref_description="SGN-E591865 [45586]">
      <seq>atcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48094" stop="46879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47794" g_stop="47179" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E591865" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47794" e_stop="47179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGT</genome_strand>
        <mrna_strand>ATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481409" ref_strand="+" ref_description="SGN-E481409 [cSTD-18-I9]">
      <seq>atcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48094" stop="46881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47794" g_stop="47181" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E481409" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47794" e_stop="47181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACT</genome_strand>
        <mrna_strand>ATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408005" ref_strand="+" ref_description="SGN-E408005 [PPI-9-J17]">
      <seq>caacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctacatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatctgtgggtcaaacactgtgggattagccatactggtagtattaaggatcttgggatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48088" stop="46881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47788" g_stop="47181" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E408005" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47788" e_stop="47181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACT</genome_strand>
        <mrna_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTACATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATCTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTATTAAGGATCTTGGGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299626" ref_strand="+" ref_description="SGN-E299626 [cLEW-20-O10]">
      <seq>cttcaaaaccccaataatggtattcatttcttcgctccgattaaagctaccagccacaaaccgatgccgatttctcaacagaagccacccgaccgtcctgctgacgagaacatccgtgaagaagcgccgcccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctaccttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaagcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48013" stop="46881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47713" g_stop="47181" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E299626" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47713" e_stop="47181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAA-CCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTA-CAGCCACAAA-CGATG-CGATTTCTCAACAGAAG-CA-CCGA-CGTCCTGCTGACGAGAACATCCGTGAAGAAGCG-CG-CCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTA-CTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACT</genome_strand>
        <mrna_strand>CTTCAAAACCCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACCAGCCACAAACCGATGCCGATTTCTCAACAGAAGCCACCCGACCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCCGCCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACCTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAAGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266924" ref_strand="+" ref_description="SGN-E266924 [cLEI-7-G12]">
      <seq>ttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48028" stop="46882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47728" g_stop="47182" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47728" e_stop="47182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGAC</genome_strand>
        <mrna_strand>TTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399705" ref_strand="+" ref_description="SGN-E399705 [cSTC-2-K11]">
      <seq>tgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgagggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48071" stop="46883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47771" g_stop="47183" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E399705" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47771" e_stop="47183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGA</genome_strand>
        <mrna_strand>TGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGAGGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441865" ref_strand="+" ref_description="SGN-E441865 [cSTA-31-O18]">
      <seq>cttctcagcttcacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcagcttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgacatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48109" stop="46903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47809" g_stop="47203" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E441865" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47809" e_stop="47203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAG</genome_strand>
        <mrna_strand>CTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAGCTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGACATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405744" ref_strand="+" ref_description="SGN-E405744 [PPI-1-B7]">
      <seq>tgcatgcttagatcctctttcatctctcctggtcttcctcagcttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgacatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48071" stop="46904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47771" g_stop="47204" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E405744" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47771" e_stop="47204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTA</genome_strand>
        <mrna_strand>TGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAGCTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGACATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474391" ref_strand="+" ref_description="SGN-E474391 [cSTB-36-I18]">
      <seq>cttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatcttgtttgggcagagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48073" stop="46908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47773" g_stop="47208" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E474391" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47773" e_stop="47208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACT</genome_strand>
        <mrna_strand>CTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTTGTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567884" ref_strand="+" ref_description="SGN-E567884 [12080]">
      <seq>gcggcttcttgcatgcttagatcctctttcatctctcctgggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccggattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttggatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggcagagcgttttggcaaacagtttctacgcatgactgatttgtggggtcaacacactgtggggattagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48080" stop="46913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47780" g_stop="47213" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E567884" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47780" e_stop="47213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCT-GGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCC-GATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTT-GATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGT-GGGTCAA-ACACTGT-GGGATTAGCC</genome_strand>
        <mrna_strand>GCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCAGAGCGTTTTGGCAAACAGTTTCTACGCATGACTGATTTGTGGGGTCAACACACTGTGGGGATTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462999" ref_strand="+" ref_description="SGN-E462999 [cPRO-13-G2]">
      <seq>caatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcgggaagactacttggccttatgggtccggtgtttggtctaagaaagaatgggttctgcctgaaattgatagtgatgatattggtagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48096" stop="46947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47796" g_stop="47247" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E462999" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47796" e_stop="47247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATG</genome_strand>
        <mrna_strand>CAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGGAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAAGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGGTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266786" ref_strand="+" ref_description="SGN-E266786 [cLEI-7-K6]">
      <seq>ttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatgaatcaacgttcaaaacccaataatggtgttcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattactggatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttgtgaagggaactcgaatctgttttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48072" stop="46977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47772" g_stop="47277" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266786" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47772" e_stop="47277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAAC-TTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCT</genome_strand>
        <mrna_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATGAATCAACGTTCAAAACCCAATAATGGTGTTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTGGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTGTGAAGGGAACTCGAATCTGTTTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567879" ref_strand="+" ref_description="SGN-E567879 [12075]">
      <seq>ccggctgcagaatccgcacgagggcggcttcttgcatgcttagatcctctttcatctctcctgggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtatgtggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48104" stop="46979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47805" g_stop="47278" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E567879" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47805" e_stop="47278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCT-GGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTAT-TGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGC</genome_strand>
        <mrna_strand>CCGGCTGCAGAATC-CGC-ACGAGGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATGTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367681" ref_strand="+" ref_description="SGN-E367681 [cLPT-14-P21]">
      <seq>ttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgccgtcctgcggacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagttcgatggtcagtattggcgatccttgattgattctcgtgttggtaagactacttggccttatgggtccggtgttaggtctaagaaggaatgggttctgcctgaaattgatagcgatgatattgttagtgcttttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48072" stop="47000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47772" g_stop="47300" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E367681" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47772" e_stop="47300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAG</genome_strand>
        <mrna_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGCCGTCCTGCGGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTCGATGGTCAGTATTGGCGATCCTTGATTGATTCTCGTGTTGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTAGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGCGATGATATTGTTAGTGCTTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265109" ref_strand="+" ref_description="SGN-E265109 [cLEI-2-N8]">
      <seq>ttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgactgaaattgatagtgatgatatcgctagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48072" stop="47007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47772" g_stop="47307" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E265109" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47772" e_stop="47307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCT</genome_strand>
        <mrna_strand>TTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGACTGAAATTGATAGTGATGATATCGCTAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471580" ref_strand="+" ref_description="SGN-E471580 [cSTB-24-D11]">
      <seq>ctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcatcatgatatggatgcgtcgaaaaattttgatggtcagtattggcgatcctcgtttgattctcgtgtcggtaagactacttggccttatggttccagtgtttggtctaagaaggaatgggtcctgcctgaaatcgatagtgatgatcttgttagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47842" stop="47007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47542" g_stop="47307" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E471580" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47542" e_stop="47307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCT</genome_strand>
        <mrna_strand>CTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCATCATGATATGGATGCGTCGAAAAATTTTGATGGTCAGTATTGGCGATCCTCGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGTTCCAGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATCGATAGTGATGATCTTGTTAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441866" ref_strand="+" ref_description="SGN-E441866 [cSTA-31-O18]">
      <seq>cttctcagcttcacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcagcttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgacatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgatattgttagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48109" stop="47008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47809" g_stop="47308" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E441866" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47809" e_stop="47308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGC</genome_strand>
        <mrna_strand>CTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAGCTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGACATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATATTGTTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303909" ref_strand="+" ref_description="SGN-E303909 [cLEX-4-E16]">
      <seq>cggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgncactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatgggattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaaatttgatggtcagtattggcgatccttgtttgagtctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaagaatgggttctgcctgaaattgatagtgatgatattgttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48079" stop="47010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47779" g_stop="47310" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E303909" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47779" e_stop="47310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGT</genome_strand>
        <mrna_strand>CGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGNCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGGATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAATTTGATGGTCAGTATTGGCGATCCTTGTTTGAGTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAAGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467679" ref_strand="+" ref_description="SGN-E467679 [cSTB-1-D7]">
      <seq>tcacacaacaatggcggcttcttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggtcctgcctgaaattgatagtgatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48093" stop="47018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47793" g_stop="47318" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E467679" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47793" e_stop="47318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATA</genome_strand>
        <mrna_strand>TCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTCCTGCCTGAAATTGATAGTGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303830" ref_strand="+" ref_description="SGN-E303830 [cLEX-4-J16]">
      <seq>acacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48091" stop="47018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47791" g_stop="47318" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E303830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47791" e_stop="47318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATA</genome_strand>
        <mrna_strand>ACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356099" ref_strand="+" ref_description="SGN-E356099 [cLHT-7-I1]">
      <seq>tggcggcttcttgcatgcttagatcctctttcctctctcctgggcttcctcaacttcatcatcaatcaacttcaaaatccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggccagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48082" stop="47021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47782" g_stop="47321" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E356099" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47782" e_stop="47321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATG</genome_strand>
        <mrna_strand>TGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGGCTTCCTCAACTTCATCATCAATCAACTTCAAAATCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGCCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409798" ref_strand="+" ref_description="SGN-E409798 [PPI-15-I5]">
      <seq>cttgcatgcttagatcctctttcatctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagactacttggccttatgggtccggtgtttggtctaagaaaggatgggtcctgcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48073" stop="47034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47773" g_stop="47334" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E409798" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47773" e_stop="47334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAA</genome_strand>
        <mrna_strand>CTTGCATGCTTAGATCCTCTTTCATCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACTACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAAGGATGGGTCCTGCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482343" ref_strand="+" ref_description="SGN-E482343 [cSTD-21-L16]">
      <seq>caacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcccaattctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcgttgaagaagtttgatggtcagtattggcgatccttggttgattctcgtggcggtaagactacttggccttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48088" stop="47074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47788" g_stop="47374" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E482343" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47788" e_stop="47374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGG</genome_strand>
        <mrna_strand>CAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCCAATTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCGTTGAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGGTTGATTCTCGTGGCGGTAAGACTACTTGGCCTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266703" ref_strand="+" ref_description="SGN-E266703 [cLEI-5-F22]">
      <seq>aaacgatgcgatttctcaaccgaagcaccgacgtcctgctgacgagaacatccgcgaagaagcgcgccgtcactgctcatctcataattttccagccaggtatgttccttgtaatgctggtcctacttctgatgaatggtctcctctagatgagattgtttatcggagtcggtctggtggattacttgatgatcagcatgatatggatgccttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47958" stop="47142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47442" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266703" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAG</genome_strand>
        <mrna_strand>AAACGATGCGATTTCTCAACCGAAGCACCGACGTCCTGCTGACGAGAACATCCGCGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTCCAGCCAGGTATGTTCCTTGTAATGCTGGTCCTACTTCTGATGAATGGTCTCCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGATCAGCATGATATGGATGCCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358728" ref_strand="+" ref_description="SGN-E358728 [cLHT-24-C21]">
      <seq>aacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaatccaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48087" stop="47147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47787" g_stop="47447" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E358728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47787" e_stop="47447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCT</genome_strand>
        <mrna_strand>AACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAATCCAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479439" ref_strand="+" ref_description="SGN-E479439 [cSTD-9-L4]">
      <seq>tggcttcacaatcacaaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacctaataatggtattcatttcttcactccgattaaagctacagccacaaacgatgcgatttcccaacagaagcaccgccgtcctgctgaccaaaacatccgcgaagaaacgcgccgtcactggtcatctcataatttttcaaccaagtatggtccttttaatgccgggcccaattctgaagaatgggattctctaaaagaaaatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48102" stop="47199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47804" g_stop="47498" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E479439" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47804" e_stop="47498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTT</genome_strand>
        <mrna_strand>TGGCTTCACAATCACA-AACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCTAATAATGGTATTCATTTCTTCACTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCCCAACAGAAGCACCGCCGTCCTGCTGACCAAAACATCCGCGAAGAAACGCGCCGTCACTGGTCATCTCATAATTTTTCAACCAAGTATGGTCCTTTTAATGCCGGGCCCAATTCTGAAGAATGGGATTCTCTAAAAGAAAATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727057" ref_strand="+" ref_description="SGN-E727057 [LA13CD10]">
      <seq>gcagcacagcacaagcaagttcactccgattgaatatctccgccgagatcctagattttccggtgtttcagctgtgctttatcctgttgtggtgttgaagactcgacaacaggtagcccaagctcatctttcctgttttagaactgccttatccgttgttaggcttgaaggaattcgtggattgtatcgggggtttgggacttcgttgatgggtacaattcctgctagggcactttatatgactgctcttgaggttaccaagagtagtgttggtacggccacggttaggctcggcattcctgagccaactgcgactgcgttagccagtgctgctgctggattgagcgcagctgtggccgcacaattggtttggactccggtggatgtggtcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcanggagtgagtgcagccatggccggaggtgtttcagcgctgattancacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggagagggccaacagtagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49407" stop="51199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49707" g_stop="49768" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49769" i_stop="50143" i_length="375">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.308" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50144" g_stop="50899" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="818" r_length="756" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E727057" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49707" e_stop="49768"/>
          <exon e_start="50144" e_stop="50899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTC</genome_strand>
        <mrna_strand>GCAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCANGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTANCACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334051" ref_strand="+" ref_description="SGN-E334051 [cTOD-24-B11]">
      <seq>cagcacagcacaagcaagttcactccgattgaatatctccgccgagatcctagattttccggtgagttttccgatctattacgatttgtatagttgaccattatgaatctttctcatatgatgcgattacagaaatgttaggtccttttgctattacccatttccgatccaaaatatggattcgccagcgaaaaaaatctttaccttctccatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaaagtatcttgtgaaaattgagaccgagacaggaaaactggggaaaatgagtttaggtgtagcggaggaggaatcgggtaaggaaatccagttgccggcggatgtagactggcaaatgctggacaaatctaagtttttcttcctcggcgccgccttattttcaggtgtttcagctgtgctttatcctgttgtggtgttgaagactcgacaacaggtagcccaagctcatctttcctgttttagaactgccttatccgttgttaggcttgaaggaattcgtggattgtatcgggggtttgggacttcgttgatgggtacaattcctgctagggcancttatatgactgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49408" stop="50630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49708" g_stop="50330" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E334051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49708" e_stop="50330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCT</genome_strand>
        <mrna_strand>CAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCANCTTATATGACTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336488" ref_strand="+" ref_description="SGN-E336488 [cTOE-4-B2]">
      <seq>gcacaagcaagttcactccgattgaatatctccgccgagatcctagattttccggtgagttttccgatctattacgatttgtatagttgaccattatgaatctttctcatatgatgcgattacagaaatgttaggtccttttgctattacccatttccgatccaaaatatggattcgccagcgaaaaaaatctttaccttctccatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaaagtatcttgtgaaaattgagaccgagacaggaaaactggggaaaatgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49415" stop="50333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49715" g_stop="50033" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E336488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49715" e_stop="50033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTT</genome_strand>
        <mrna_strand>GCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332012" ref_strand="+" ref_description="SGN-E332012 [cTOD-16-D2]">
      <seq>cacaagcaagttcactccgattgaatatctccgccgagatcctagattttccggtgagttttccgatctattacgatttgtatagttgaccattatgaatctttctcatatgatgcgattacagaaatgttaggtccttttgctattacccatttccgatccaaaatatggattcgccagcgaaaaaaatctttaccttctccatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaaagtatcttgtgaaaattgagaccgagacaggaaaactggggaaaatgagtttaggtgtagcggaggaggaatcgggtaaggaaatccagttgccggcggatgtagactggcaaatgctggacaaatctaagtttttcttcctcggcgccgccttattttcaggtgtttcagctgtgctttatcctgttgtggtgttgaagactcgacaacaggtagcccaagctcatctttcctgttttagaactgccttatccgttgttaggcttgaaggaattcgtggattgtatcgggggtttgggacttcgttgatgggtacaattcctgctagggcactttatatgactgctcttgnagttaccnagagtagtgttggtacgggcacggttaggctcggcattcctgagccaactgcgactgcngttagcagtgctgctgctggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49416" stop="50724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49716" g_stop="50424" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E332012" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49716" e_stop="50424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGC-GTTAGCCAGTGCTGCTGCTGGATTG</genome_strand>
        <mrna_strand>CACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGNAGTTACCNAGAGTAGTGTTGGTACGGGCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCNGTTAG-CAGTGCTGCTGCTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201376" ref_strand="+" ref_description="SGN-E201376 [cLEC-4-B13]">
      <seq>acaaaccagttcactacaattgaatatctcccccgagatcctacattttcccaaatgttaggtccttttgctattacccatttccgatccaaaatatggattcgccagcgaaaaaaatctttaccttcttcatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49506" stop="50281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49717" g_stop="49768" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49769" i_stop="49839" i_length="71">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49840" g_stop="49981" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="194" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E201376" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49717" e_stop="49768"/>
          <exon e_start="49840" e_stop="49981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAA</genome_strand>
        <mrna_strand>ACAAACCAGTTCACTACAATTGAATATCTCCCCCGAGATCCTACATTTTCCC.......................................................................AAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTTCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279101" ref_strand="+" ref_description="SGN-E279101 [cLEL-4-K20](-)">
      <seq>ttagatttgtccagcatttgccagtctacatccgccggcaactggatttccttacccgattcctcctccgctacacctaaactcatttttccccagttttcctgtctcggtctcaattttcacaagatacttttattccttccgggaaatgtacagtacaaatcaacgtctaatctactaaattgaagctagatggagaaggtaaagatttttttcgctggcgaatccatattttggatcggaaatgggtaatagcaaaaggacctaacatttctgtaatcgcatcatatgagaaagattcataatggtcaactatacaaatcgtaatagatcggaaaactcaccggaaaatctaggatctcggcggagatattcaatcggagtgaacttgctctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50411" stop="49415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50111" g_stop="49721" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E279101" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50111" e_stop="49721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTTGTCCAGCATTTGCCAGTCTACATCCGCCGGCAACTGGATTTCCTTACCCGATTCCTCCTCCGCTACACCTAAACTCA-TTTTCCCCAGTTTTCCTGTCTCGGTCTCAATTTTCACAAGATACTTTTATTCCTTCCGGGAAATGTACAGTACAAATCAACGTCTAATCTACTAAATTGAAGCTAGATGGAGAAGGTAAAGATTTTTTTCGCTGGCGAATCCATATTTTGGATCGGAAATGGGTAATAGCAAAAGGACCTAACATTTCTGTAATCGCATCATATGAGAAAGATTCATAATGGTCAACTATACAAATCGTAATAGATCGGAAAACTCACCGGAAAATCTAGGATCTCGGCGGAGATATTCAATCGGAGTGAACTTGC</genome_strand>
        <mrna_strand>TTAGATTTGTCCAGCATTTGCCAGTCTACATCCGCCGGCAACTGGATTTCCTTACCCGATTCCTCCTCCGCTACACCTAAACTCATTTTTCCCCAGTTTTCCTGTCTCGGTCTCAATTTTCACAAGATACTTTTATTCCTTCCGGGAAATGTACAGTACAAATCAACGTCTAATCTACTAAATTGAAGCTAGATGGAGAAGGTAAAGATTTTTTTCGCTGGCGAATCCATATTTTGGATCGGAAATGGGTAATAGCAAAAGGACCTAACATTTCTGTAATCGCATCATATGAGAAAGATTCATAATGGTCAACTATACAAATCGTAATAGATCGGAAAACTCACCGGAAAATCTAGGATCTCGGCGGAGATATTCAATCGGAGTGAACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271115" ref_strand="+" ref_description="SGN-E271115 [cLEM-22-F7]">
      <seq>agaaatgttaggtccttttgctattacccatttcggatccaaaatatggattcgcccgcgaaaaaaatctgtaccttctccatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaaagtatcttgtgaaaattgagaccgagacaggaaaactggggaaaatgagtttacgtgtaacggaggaggaatcgggtgaggaaatccacttgccggcggatgtagactggcaaatgctggacaaatctaagtttttcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49538" stop="50423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49838" g_stop="50123" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E271115" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49838" e_stop="50123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCT</genome_strand>
        <mrna_strand>AGAAATGTTAGGTCCTTTTGCTATTACCCATTTCGGATCCAAAATATGGATTCGCCCGCGAAAAAAATCTGTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTACGTGTAACGGAGGAGGAATCGGGTGAGGAAATCCACTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606113" ref_strand="+" ref_description="SGN-E606113 [22050]">
      <seq>gtttgaagactcgtcaacaggtagcgcaagttcatctttcctgtttcaaaactgccttttccgttgttaggcttgaaggaattcgcggattgtatcgtggatttgggacttcgttgatgggtacaattcctgctagggcactttatatgactgctcttgaggttaccaagagtagtgttggtacggccacggttaggctcggcattcctgagcctactgcgaccgcgttagccagtgctgctgctgggctgagcgcagccgttgccgcacaactggtttggactccggtggatgtggtgagccagcggctcatggtgcagcatgtttgcgctgctccagcatcgtgtaaatatctcaatgggatcgatgcttttcgaagaatcctcaagacagatggacctaagggactgtacagaggttttgggttttcaattttgacatatgctccatccaatgcactgtggtggacatcctacgccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacacgaattgaggataacatcaagagtactctgaagcctgattcgaagacttgttatgatggttcagggagtgagtgcagccatgggcgggagcgcgtttcagctctgattacaaaccattagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49873" stop="51133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50173" g_stop="50833" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E606113" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50173" e_stop="50833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACA-GAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGAC-TGTTATGATGGTTCAGGGAGTGAGTGCAGCCAT-GGCCGGAG-GTGTTTCAGCGCTGATTACAACACCATTAGACA</genome_strand>
        <mrna_strand>GT-TTGAAGACTCGTCAACAGGTAGCGCAAGTTCATCTTTCCTGTTTCAAAACTGCCTTTTCCGTTGTTAGGCTTGAAGGAATTCGCGGATTGTATCGTGGATTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCTACTGCGACCGCGTTAGCCAGTGCTGCTGCTGGGCTGAGCGCAGCCGTTGCCGCACAACTGGTTTGGACTCCGGTGGATGTGGTGAGCCAGCGGCTCATGGTGCAGCATGTTTGCGCTGCTCCAGCATCGTGTAAATATCTCAATGGGATCGATGCTTTTCGAAGAATCCTCAAGACAGATGGACCTAAGGGACTGTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCTCCATCCAATGCACTGTGGTGGACATCCTACGCCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACACGAATTGAGGATAACATCAAGAGTACTCTGAAGCCTGATTCGAAGACTTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGGCGGGAGCGCGTTTCAGCTCTGATTACAA-ACCATTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344836" ref_strand="+" ref_description="SGN-E344836 [cTOF-21-I8]">
      <seq>ttgaagactcgacaacaggtagcccaagctcatctttcctgttttagaactgccttatccgttgttaggcttgaaggaattcgtggattgtatcgggggtttgggacttcgttgatgggtacaattcctgctagggcactttatatgactgctcttgaggttaccaagagtagtgttggtacggccacggttaggctcggcattcctgagccaactgcgactgcgttagccagtgctgctgctggattgagcgcagctgtggccgcacaattggtttggactccggtggatgtggtcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49876" stop="51019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50176" g_stop="50719" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E344836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50176" e_stop="50719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTG</genome_strand>
        <mrna_strand>TTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245342" ref_strand="+" ref_description="SGN-E245342 [cLEF-44-J4]">
      <seq>tcggcattcctgagccaactgcgactgcgttagccagtgctgctgctggattgagcgcagctgtggccgcacaattggtttggactccggtggatgtggtcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcagcgctgattacaacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50072" stop="51177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50372" g_stop="50877" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E245342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50372" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGA</genome_strand>
        <mrna_strand>TCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698293" ref_strand="+" ref_description="SGN-E698293 [FA05DD08]">
      <seq>tgctgctggattgagcgcagctgtggccgcacaattggtttggaccccggaggatgtggtcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcaccaacaatggcgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcaccgctgattacaacaccattagacacaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50112" stop="51140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50412" g_stop="50840" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E698293" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50412" e_stop="50840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAA</genome_strand>
        <mrna_strand>TGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACCCCGGAGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCACCAACAATGGCGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCACCGCTGATTACAACACCATTAGACACAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392356" ref_strand="+" ref_description="SGN-E392356 [TUS-35-D18]">
      <seq>tcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcagcgctgattacaacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggagagggccaacagtagctcagacggtaagaaatttagtaaaggaaggtgggtggatggcttgttacagaggattaggccctcgatgggcttcaatgtccatgtctgcaaccacaatgatcactacttatgaattcctcaaacgcctctccacaaagaatcaagaaaattgggcatattcatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50171" stop="51366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50471" g_stop="51066" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E392356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50471" e_stop="51066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCA</genome_strand>
        <mrna_strand>TCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATATTCATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202468" ref_strand="+" ref_description="SGN-E202468 [cLEC-6-I4]">
      <seq>cagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcagcgctgattacaacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggagagggccaacagtagctcagacggtaagaaatttagtaaaggaaggtgggtggatggcttgttacagaggattaggccctcgatgggcttcaatgtccatgtctgcaaccacaatgatcactacttatgaattcctcaaacgcctctccacaaagaatcaagaaaattgggcatagtcatccccatagatagctgtcactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50172" stop="51385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50472" g_stop="51085" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E202468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50472" e_stop="51085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTC</genome_strand>
        <mrna_strand>CAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374776" ref_strand="+" ref_description="SGN-E374776 [TUS-14-F6]">
      <seq>cagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttactttagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcagcgctgattacaacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggatagggccaacagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50172" stop="51197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50472" g_stop="50897" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E374776" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50472" e_stop="50897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGC</genome_strand>
        <mrna_strand>CAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTTAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGATAGGGCCAACAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234943" ref_strand="+" ref_description="SGN-E234943 [cLEL-6-L67](-)">
      <seq>ggtgtttcagcgctgattacaacanccttagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggagagggccaacagtagctcagacggtaagaaatttagtaaaggaaggtgggtggatggcttgttacagaggattaggccctcgatgggcttcaatgtccatgtctgcaaccacaatgatcactacttatgaattcctcaaacgcctctccacaaagaatcaagaaaattgggcatagtcatccccatagatagctgtcactcttcttagatttatgtttctctctttgatccatgtataagttttctttttgaatgatccttttttaggaatcagtatgctgagtttagacataaaaaaaacctaaatcaagaacaaaaagaatgatgaatgtacaaagtatgaatctgtataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50500" stop="51537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50800" g_stop="51228" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="450"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E234943" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50800" e_stop="51228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</genome_strand>
        <mrna_strand>GGTGTTTCAGCGCTGATTACAACANCCTTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234847" ref_strand="+" ref_description="SGN-E234847 [cLEL-6-L67](-)">
      <seq>tgggcttcaatgtccatgtctgcaaccacaatgatcactacttatgaattcctcaaacgcctctccacaaagaatcaagaaaattgggcatagtcatccccatagatagctgtcactcttcttagatttatgtttctctctttgatccatgtataagttttctttttgaatgatccttttttaggaatcagtatgctgagtttagacataaaaaaaacctaaatcaagaacaaaaagaatgatgaatgtacaaagtatgaatctgtataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50665" stop="51537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50965" g_stop="51228" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="267" polyA_stop="285"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E234847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50965" e_stop="51228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</genome_strand>
        <mrna_strand>TGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392355" ref_strand="+" ref_description="SGN-E392355 [TUS-35-D18](-)">
      <seq>acaaaaaagaatgatgaatgtacaaagtatgaatctgtatatatagtccacttcactaaacttatttggctgttgttactgtttctctttccgttaagctaccctatgctttctcttgtgcttgttttaactctcgcggttctttcggaaacagcctctccatctcaatgaggtagggataagcagtgtacactctacttcatctcaatgaactaaagtgggtatgttgctgttgttgtactgagcaatttgtctacttacagatgtgagacttctttttcttccttcaagaactatactttttcgagaatggagccaaaatagttggaagctatccttctcaggcactgatcaaatagtaagatgagaatctgtagtgggcttaattgacttttagctaatctcaaccaatggaagatgagattctgcctgatcatgatgttgatttgaacatgttgcgtgcacaaaggttttagcatatctattcttgatttaatgtgacaagaactcagtcagattgaggttgctcatattgtcggatgagggttgttgtaggctgaaaacctgtgtaaaatttgtcaatttgggaataggagctaggagaggtagagataagtaaaaagagaaagtgattatgtgtattgttattttgttgtctccttccctctattacttctcttttttctttttttctttttgtatgttgagtatttatcgaaaataataccttttatctgttgagataggaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50894" stop="52246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51193" g_stop="51945" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E392355" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51193" e_stop="51945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAA</genome_strand>
        <mrna_strand>ACAAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374775" ref_strand="+" ref_description="SGN-E374775 [TUS-14-F6](-)">
      <seq>agctaccctatgctttctcttgtgcttgttttaactctcgcggttctttcggaaacagcctctccatctcaatgaggtagggataagcagtgtacactctacttcatctcaatgaactaaagtgggtatgttgctgttgttgtactgagcaatttgtctacttacagatgtgagacttctttttcttccttcaagaactatactttttcgagaatggagccaaaatagttggaagctatccttctcaggcactgatcaaatagtaagatgagaatctgtagtgggcttaattgacttttagctaatctcaaccaatggaagatgagattctgcctgatcatgatgttgatttgaacatgttgcgtgcacaaaggttttagcatatctattcttgatttaatgtgacaagaactcagtcagattgaggttgctcatattgtcggatgagggttgttgtaggctgaaaacctgtgtaaaatttgtcaatttgggaataggagctaggagaggtagagataagtaaaaagagaaagtgattatgtgtattgttattttgttgtctccttccctctattacttctcttttttctttttttctttttgtatgttgagtatttatcgaaaataataccttttatctgttaaaataggaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50989" stop="52246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51289" g_stop="51953" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E374775" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51289" e_stop="51953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAAATTTGTGT</genome_strand>
        <mrna_strand>AGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTAAAATAGGAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288283" ref_strand="+" ref_description="SGN-E288283 [cLES-16-J5]">
      <seq>gataagcagtgtacactctacttcatctcaatgaactaaagtgggtatgttgctgttgttgtactgagcaatttgtctacttacagatgtgagacttctttttcttccttcaagaactatactttttcgagaatggagccaaaatagttggaagctatccttctcaggcactgatcaaatagtaagatgagaatctgtagtgggcttaattgacttttagctaatctcaaccaatggaagatgagattctgcctgatcatgatgttgatttgaacatgttgcgtgcacaaaggttttagcatatctattcttgatttaatgtgacaagaactcagtcagattgaggttgctcatattgtcggatgagggttgttgtaggctgaaaacctgtgtaaaatttgtcaatttgggaataggagctaggagaggtagagataagtaaaaagagaaagtgattatgtgtattggtattttgttgtctccttccctctattacttctcttttttctttttttctttttgtatgttgagtatttatcgaaaataataccttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="51070" stop="52227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51370" g_stop="51927" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E288283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51370" e_stop="51927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATC</genome_strand>
        <mrna_strand>GATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGGTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221462" ref_strand="+" ref_description="SGN-E221462 [cLEL-10-J20](-)">
      <seq>ggcatatgtgaggggaagtatccgaagaatgaattttggatatgttgcgatcattgtgaaacatggttccacggcccagtgtgttaaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagttgtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaattgtgtctgtgtgtactccccaaccccacccaattttaaacgtatttattttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53182" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52882" g_stop="52480" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52479" i_stop="52293" i_length="187">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52292" g_stop="52261" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="436" r_length="31" r_score="0.781"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E221462" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52882" e_stop="52480"/>
          <exon e_start="52292" e_stop="52261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCC-AGTGTGTT-AAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAACGTATTTATTTTTTAAACCACTTGTCTCGCTTTCATTAACTGTGTTTTTTAAATTTCGATTGATTAGGACAAAGTTTTTGATAATATTAAGACTTCTTTTAGAATATCCTGAACAGTTCCGGTAGGTAGGGTTGATGTTATTAAGAAATTAGTTGAATATAACAAGTGAAGCAATCAGTTTTTTTCCACTATATGATTTTTTAGAAAAAAAATAGAAGAA</genome_strand>
        <mrna_strand>GGCATATGTGAGGGGAAGTATCCGAAGAATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCCAGTGTGTTAAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC...........................................................................................................................................................................................GTAT-TTATTTTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222030" ref_strand="+" ref_description="SGN-E222030 [cLEL-10-J20](-)">
      <seq>acatggttccacggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagttgtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaattgtgtctgtgtgtactccccaaccccacccaattttaaacgtatttattttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53122" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52822" g_stop="52480" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52479" i_stop="52293" i_length="187">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52292" g_stop="52261" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="374" r_length="31" r_score="0.781"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E222030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52822" e_stop="52480"/>
          <exon e_start="52292" e_stop="52261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAACGTATTTATTTTTTAAACCACTTGTCTCGCTTTCATTAACTGTGTTTTTTAAATTTCGATTGATTAGGACAAAGTTTTTGATAATATTAAGACTTCTTTTAGAATATCCTGAACAGTTCCGGTAGGTAGGGTTGATGTTATTAAGAAATTAGTTGAATATAACAAGTGAAGCAATCAGTTTTTTTCCACTATATGATTTTTTAGAAAAAAAATAGAAGAA</genome_strand>
        <mrna_strand>ACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC...........................................................................................................................................................................................GTAT-TTATTTTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396027" ref_strand="+" ref_description="SGN-E396027 [TUS-18-J18](-)">
      <seq>gggcagcggagcctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaagaagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgaattttggatatgttgcgatcattgtgaaacatggttccacggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaaattgtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaaaaaagtctgtgtgtactccccaaccccacccaattttaaaaaaagttaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53337" stop="52181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53037" g_stop="52480" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="580"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E396027" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53037" e_stop="52480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAATTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAAAAAAGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398548" ref_strand="+" ref_description="SGN-E398548 [TUS-18-L18](-)">
      <seq>gggcagcggagcctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaagaagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgaattttggatatgttgcgatcattgtgaaacatggttccacggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagatgtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaaaaaagtctgtgtgtactccccaaccccacccaattttaaaaaaatttattttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53337" stop="52181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53037" g_stop="52480" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="581"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E398548" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53037" e_stop="52480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGATGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAAAAAAGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396029" ref_strand="+" ref_description="SGN-E396029 [TUS-18-J20](-)">
      <seq>agcaggagaagaagatgacccccacccgcgtattgagatggattttgaagaggaggaaggtgagacactgtgcggcatatgagaggagaagtatgtgaaggatgaatttaagatatggtgcgatcattgtgaaacatggttccaaggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccatgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagtagtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaaaaaagtctctgtgtactccccaaccccacccaattttaaacatatttattttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53228" stop="52164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52955" g_stop="52480" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="499"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E396029" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52955" e_stop="52480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC</genome_strand>
        <mrna_strand>AGCAGGAGAAGAAGATGACCCCCACCCGCGTATTGAGATGGATTTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGAGAGGAGAAGTATGTGAAGGATGAATTTAAGATATGGTGCGATCATTGTGAAACATGGTTCCAAGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCATGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTAGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAAAAAAGTCTCTGTGTACTCCCCAACCCCACCCAATTTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231489" ref_strand="+" ref_description="SGN-E231489 [cLED-4-K6]">
      <seq>ggcagcggagcctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaagaagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgaattttggatatgttgcgatcattgtgaaacatggttccacggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagttgtcccgaattgagtagatgtaccaaaaatttataaatttaggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53336" stop="52243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53036" g_stop="52543" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E231489" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53036" e_stop="52543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACAT</genome_strand>
        <mrna_strand>GGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAAATTTATAAATTTAGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319541" ref_strand="+" ref_description="SGN-E319541 [cTOB-15-K16]">
      <seq>gtacatctactcaattcgggacaactttagacgtaacgactgaagttagtcttaacagagtctaacttcagtttcatacttcagacattttagcaaaacatcatgaatagacagttagcagcaagagaactgttgttgatcagtattctgtaaagtgagtccgggctcttttgctggtgcaaggcgggcactggtattgcttcatatactcagctgcggcagcggtgatcttaacacactggccgtggaaccatgtttcacaatgatcgcaacatatccaaaattcatccttcggatacttcccctcacatatgccgcacagtgtctcaccttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="52267" stop="53203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52567" g_stop="52903" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E319541" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52567" e_stop="52903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATCTACTCAATTCGGGACAACTTTAGACGTAACGACTGAAGTTAGTCTTAACAGAGTCTAACTTCAGTTTCATACTTCAGACATTTTAGCAAAACATCATGAATAGACAGTTAGCAGCAAGAGAACTGTTGTTGATCAGTATTCTGTAAAGTGAGTCCGGGCTCTTTTGCTGCTGCAAGGCGGGCACTTGTATTGCTTCATATACTCAGCTGTGGCAGCGGTGATCTTAACACACTGGCCGTGGAACCATGTTTCACAATGATCGCAACATATCCAAAATTCATCCTTCGCATACTTCCCCTCACATATGCCGCACAGTGTCTCACCTTCCTC</genome_strand>
        <mrna_strand>GTACATCTACTCAATTCGGGACAACTTTAGACGTAACGACTGAAGTTAGTCTTAACAGAGTCTAACTTCAGTTTCATACTTCAGACATTTTAGCAAAACATCATGAATAGACAGTTAGCAGCAAGAGAACTGTTGTTGATCAGTATTCTGTAAAGTGAGTCCGGGCTCTTTTGCTGGTGCAAGGCGGGCACTGGTATTGCTTCATATACTCAGCTGCGGCAGCGGTGATCTTAACACACTGGCCGTGGAACCATGTTTCACAATGATCGCAACATATCCAAAATTCATCCTTCGGATACTTCCCCTCACATATGCCGCACAGTGTCTCACCTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231610" ref_strand="+" ref_description="SGN-E231610 [cLED-4-C7]">
      <seq>ggcagcggagcctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaagaagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgaattttggatatgtcgcgatcattgcgaaacatggttccacggccagtgtgttaagagcaccgctgccacagctgagtatatgaagcgatacaagtgcccgccttgcagcagcagaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagcatgaaactgaagttagactctgttaacactaactgcagtcgttacgtctaaagttgtcccgaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53336" stop="52276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53036" g_stop="52576" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E231610" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53036" e_stop="52576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAG</genome_strand>
        <mrna_strand>GGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTCGCGATCATTGCGAAACATGGTTCCACGGCCAGTGTGTTAAGAGCACCGCTGCCACAGCTGAGTATATGAAGCGATACAAGTGCCCGCCTTGCAGCAGCAGAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGCATGAAACTGAAGTTAGACTCTGTTAACACTAACTGCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396028" ref_strand="+" ref_description="SGN-E396028 [TUS-18-J18]">
      <seq>gggcagcggagcctcacgttttgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaataagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgagttttggatatgttgcgatcattgtgaaacgtggttcctcggccagtgtgttaagatcaccgctgccacagctgagtatgtgaagcagtacgagtgcccgccttgcggcagcatcagagcccggattctttttagagaatacagttcatcaacggttctcttgctgcggactgatctattcatgatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53337" stop="52361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53037" g_stop="52661" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E396028" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53037" e_stop="52661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTG-TCTATTCATGATGTTTT</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCACGTTTTGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAATAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAGTTTTGGATATGTTGCGATCATTGTGAAACGTGGTTCCTCGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATGTGAAGCAGTACGAGTGCCCGCCTTGCGGCAGCATCAGAGCCCGGATTCTTTTTAGAGAATACAGTTCATCAACGGTTCTCTTGCTGCGGACTGATCTATTCATGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543623" ref_strand="+" ref_description="SGN-E543623 [TUS-65-I14]">
      <seq>gtattatcaaattctctcaaactttcttcttcttctctcatatgatttttgacgacgctgcttgtaaccgcagaagtggtgtttaattattttttttaaaaaaagatggaatttggagctaaaggacagaagaaggcaaaacccattgatgtcttcaagaatgtcaagggcagatatactggtctaattaaagctctcacaacagatgtggatgaattttataagcagtgtgatcctgaaaaggagaacttaagcttgtatggactcccaaatgagcgatgggaggtcaatctgcctgctgaagattcaccaccaggccttccagagcctgttcttggtatcaactttgctagagagggaatggaacaaaaggagtggctttcttttgttgcttatcacagtgattcttggttgcttgctattgccttctacgctggtgctagatgtggatttggtaaagccgacaggaagaagctctttgacatgataaatgatttaccttcaatacatgaagtagtgattggtgttccaaagacgcaacaaaaagaaaaacctacagtcgctaatcaaagtaaaaacaaatccaagccnaacgccactaagagggcagcggaccctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="57569" stop="52665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57269" g_stop="57065" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56983" g_stop="56951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="238" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014">
            <donor d_prob="0.528" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54936" g_stop="54708" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="467" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54707" i_stop="53451" i_length="1257">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53450" g_stop="53315" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="603" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53314" i_stop="53039" i_length="276">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53038" g_stop="52965" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="677" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E543623" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57269" e_stop="57065"/>
          <exon e_start="56983" e_stop="56951"/>
          <exon e_start="54936" e_stop="54708"/>
          <exon e_start="53450" e_stop="53315"/>
          <exon e_start="53038" e_stop="52965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAGGTTTCTTCTTCTTCTTTTTTTTTTTGTTATCATTTTTAATTTTGCTTTATTTAATCGATTTTGTTTTTTTTTTGTATTCAGATGTGGATGAATTTTATAAGCAGTGTGATCCTGGTAAGGATATTTCTTTTTAAGTTATGGTCTCTGTTTTGGGTTATGAGTGGAATAGGGTTGAAAATTTTCTGTTTCTGTAATAATTTGTACTATGTTATATGCATATTGTTAAATTCGGTATTTAAACTCGATGAGTTCAACTTTTAAGGTTAAATTAAGTGCTTTTAAAATTAAGGGTTCCTTAAAAACTGGATACAGTTGTATATGCATAGTATATAAATTTTGGATTATCCATTTTATAAGAAAAATTTGACTCTCCTCCAATGATTGTGGTATGAAAACTCCATCCGCCTTTGGGTTTATGTATTTTCGGATATATGTCTTTTTTCTTTAGATAGACATTGAAAGATTTTGGACAAAATTGAATCAACGAATAAGAACATAAATTCCACCCTCCAATGATCATAGTATGTAAACTCCATCCGCCTTTGGACTCTTGGTGTATGTCTTTTTTTGTAGTTATTTGAAGTTGAAAGATTTTGGAGTAATATTGGGAGAGGCGGATCTAGGATTTCGAGAACCTATATACACTGCTAAACAAAGGGAAACAAAATATATATTAAGTTGGAACTGTTCCTCGTCATTATAGATAAATAGCTCAACGTTCAACCAAGTGTTCATTCAATGCTTTTGGAGCATGGATAGCAACAGATAATTCTAGAAAATTTGTTTGGCGAAGAGATATGGGTTCATGCAGGGGAGGAGCTACATGGTACTTATCGAACCTCCTTCGTCGGAAAACTACACTGTATATAGAACATCGATTTATTCACTTATGAGTATAATTTAATAGTGAACTACCTCAACATAAGCTAAAAGGCTTGTTTCAGTGGTAAACTGCGTTCAAGATTCGGTCAAATCTTCTCGGATACGAGAGTTCGAGTCCGGGTAGCATCGTTCTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTGTGTTCTATCACATTTTATGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACCGAGTCCGGGTAGCATCGTTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACGTAGAATTGAATTTTATCTACTTAATTATATCCGACCTGATCCATTTATATCTGATCCGACCCGTTTATATGTGGGTAATATTAGCGTATTTACTTATTTTTTTGAACCCCTCAATGAAAATCCTGCCTCCACCACTGGGTTCATGTGCACACTATTTCTAGAGTAGAGCCACCCCTGAATATTGGATGATAGAGTAAGAACATCAATTCTACTCTCCAATAATCATTACATTGCTTTTAACATTATTCCATATCAGTGATCTTTTGTTCCTGTATCTAAATTTTTATATATGGAAAGATGAAATTCAAAACATTTTAGTCATTGTTAACCAGAACATAAAATTTCTTATAAAAAATCGTTATGATAAGGTAGATCTGGATATGATTGTTCTCATATCCACAGGCATCATAGGGAAATCTTTACCCCTCCTAGAAGCAGAATTAGAATCAAGTTCGTGCTTAGCTTAAAAGTAACAATTCTAATTCTAAGTCCTTGCTTTTGATTTGATAACTCCTTCCTTGTTTCAGCGGTGAAAAATAAGTATACATAGGATACTAAGCCTTACAGCTGTAATTAATGGTAGATATCGAATGAAGACTTTGTACGTCATGTTTTTGGAAGTGATATTTAGGGTATCAGAGTAATGTCATGATTGCTGGGCCTTCTTTTTATATTGAATACTCTATGTTGCTCGGACTCTTCAAAAATGTTGGTCAGTGCGTTTCAAAGGAGGATCTCACACGGGTGTGGCAGAATTTTGGAGAATCCGAGCAACATCTATTATAAGCTCCCTCCTCACCACACCTCCCTGTCTTCCTCCAAGTTTATTACAGTCAATATGTTTAATCTGTCTTATCTCAAATTGCTTATAACACAGTACTTCTATTTCTTCTTGTTCGTGGTCAAACATATCAACTGTTTTTTTTTACCTTTTTTATGTAGAAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAGGTACTTCTTCTCACTTGAATTTCTTTTATGCAGCCAAAACATCTCCATGCTCGTAAAAGCATCTTTGTGAGCATGTCCTGATGATTGACAATATACGTTTAGCGATTCCGCCTGCTCCAGTACCTCATTTGATGTTTTTTTGTGTTGATTCTGCTTCTCAATGCATTAAAGTTTTTTCTCAATGCTCTCTGTTAAAAGCAGAAGTAATGCATCTGATTAATGTGTTTTAGGTTGGTAATATAATAGTACTTCTAGTATCGAGCTAACACTGCCCGTACAGCCGTGCCTATTACTAGCAAGAAAAGCTAAAAGCAGTAAGCTTGATTAATTTCAATTCATTGCATTTTGCACCTTTGGTGCACATTTTACTTTCTGGGAAAAATCATTTAAGTATTTTTTTGGTCCAAATCTGAATATTTTACTTTTTTAAAATTGAACTATTACCCTATGAAATGAATTTCTTTGCCGAAATTCCTAATAGCACCTCTAGTACTTAAGCAGAAACAATGGAGGATGTTCAGGATATAGAAGTCGTTAATTAGCTTTGTAAGTAATATATCCATTTTACTCCCTATAGAATGTTCATGTTTGAATGGAAACCTATTTTAGTCATTTTGTAAGAAGATAAGAAGTTCGGTAGCAAAAGTGAAAGGAAGGACAGGATGCAAACTGCAAAATATGCATAAAAAAAGAGGTGTGAAAAAAATGCAAATAGCTCGTTCAGTATTACCTTGAATATTAGCTTGCACTTCTTAAAATGAGCTGATAGAATCGCAAGGAGTGGCTGTTAACAGGTTAATAAGATTCAACTAGTTTGGTTTAGTAAAAAGAACATTAACGTGGTTTATTTAGTAGGGCTTGCTCTCAAATTAACGTTGATCATTGACCTCTGGGCTCTGGTTTCTTGACATTGTATGATGAACGTAACTCATGCTTGTCAAGCTGATATCTGAGTCGACCAACCAACAGCAACATTGAATGTATGGTTCAACTTAAATTCATCTCTGCACTTTCGTGTTTGTTATTTGTGAAATCGTTCATAATGGTGATTCTAATGAGAAGCCCTTGTTCTAGATTTTTTCGTATTGAACTTTGTGCATAGAGGATTAGTACATTCAGATTTCTATTAAGCTACCAGTGATAGTCTTTTGCTAGAAAATGTATAGACTGTGCCTCAATTGTGAGACAAGTCATTTTGCTTTAACACTTCATGACGTTTACTATGTTGTTGCTCATTAGTTGCCTTCTGTTTTCCAGGAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCAAACGCCACTAAGGTAAATAATTATGTTCCCAGAGTATGCTTTATTTGCATGTCAGCTCTGTGATACCTTTTTGCGAGTTGGTAAGACTTAAATGATGTGTTTGCAAGCATCCAGATATCAATCTTATGGTCATTTTTGGCAGATTTTGATTCAAATTATGCTTTAAAGTTCTGATTTTCTGGTATCTAGACTAGTTGTTGCATGAATAGCTTGTCTTAAACTAGCTTAAACCCTTCTACCACATTCTTTTTGAGCTATCGATGTTTTCTTTTCCACTTGATAAAACAGAGGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGA</genome_strand>
        <mrna_strand>GTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG.................................................................................ATGTGGATGAATTTTATAAGCAGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCNAACGCCACTAAG....................................................................................................................................................................................................................................................................................AGGGCAGCGGACCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304755" ref_strand="+" ref_description="SGN-E304755 [cLEX-11-J8]">
      <seq>tattatcaaattctctcaaactttcttcttcttctctcatatgatttttgacgacgctgcttgtaaccgcagaagtggtgtttaattattttttttaaaaaaagatggaatttggagctaaaggacagaagaaggcaaaacccattgatgtcttcaagaatgtcaagggcagatatactggtctaattaaagctctcacaacagatgtggatgaattttataagcagtgtgatcctgaaaaggagaacttaagcttgtatggactcccaaatgagcgatgggaggtcaatctgcctgctgaagattcaccaccaggccttccagagcctgttcttggtatcaactttgctagagagggaatggaacaaaaggagtggctttcttttgttgcttatcacagtgattcttggttgcttgctattgccttctacgctggtgctagatgtggatttggtaaagccgacaggaagaagctctttgacatgataaatgatttaccttcaatacatgaagtagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="57568" stop="53096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57268" g_stop="57065" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56983" g_stop="56951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="237" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014">
            <donor d_prob="0.528" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54936" g_stop="54708" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="466" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54707" i_stop="53451" i_length="1257">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53450" g_stop="53396" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="521" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E304755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57268" e_stop="57065"/>
          <exon e_start="56983" e_stop="56951"/>
          <exon e_start="54936" e_stop="54708"/>
          <exon e_start="53450" e_stop="53396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAGGTTTCTTCTTCTTCTTTTTTTTTTTGTTATCATTTTTAATTTTGCTTTATTTAATCGATTTTGTTTTTTTTTTGTATTCAGATGTGGATGAATTTTATAAGCAGTGTGATCCTGGTAAGGATATTTCTTTTTAAGTTATGGTCTCTGTTTTGGGTTATGAGTGGAATAGGGTTGAAAATTTTCTGTTTCTGTAATAATTTGTACTATGTTATATGCATATTGTTAAATTCGGTATTTAAACTCGATGAGTTCAACTTTTAAGGTTAAATTAAGTGCTTTTAAAATTAAGGGTTCCTTAAAAACTGGATACAGTTGTATATGCATAGTATATAAATTTTGGATTATCCATTTTATAAGAAAAATTTGACTCTCCTCCAATGATTGTGGTATGAAAACTCCATCCGCCTTTGGGTTTATGTATTTTCGGATATATGTCTTTTTTCTTTAGATAGACATTGAAAGATTTTGGACAAAATTGAATCAACGAATAAGAACATAAATTCCACCCTCCAATGATCATAGTATGTAAACTCCATCCGCCTTTGGACTCTTGGTGTATGTCTTTTTTTGTAGTTATTTGAAGTTGAAAGATTTTGGAGTAATATTGGGAGAGGCGGATCTAGGATTTCGAGAACCTATATACACTGCTAAACAAAGGGAAACAAAATATATATTAAGTTGGAACTGTTCCTCGTCATTATAGATAAATAGCTCAACGTTCAACCAAGTGTTCATTCAATGCTTTTGGAGCATGGATAGCAACAGATAATTCTAGAAAATTTGTTTGGCGAAGAGATATGGGTTCATGCAGGGGAGGAGCTACATGGTACTTATCGAACCTCCTTCGTCGGAAAACTACACTGTATATAGAACATCGATTTATTCACTTATGAGTATAATTTAATAGTGAACTACCTCAACATAAGCTAAAAGGCTTGTTTCAGTGGTAAACTGCGTTCAAGATTCGGTCAAATCTTCTCGGATACGAGAGTTCGAGTCCGGGTAGCATCGTTCTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTGTGTTCTATCACATTTTATGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACCGAGTCCGGGTAGCATCGTTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACGTAGAATTGAATTTTATCTACTTAATTATATCCGACCTGATCCATTTATATCTGATCCGACCCGTTTATATGTGGGTAATATTAGCGTATTTACTTATTTTTTTGAACCCCTCAATGAAAATCCTGCCTCCACCACTGGGTTCATGTGCACACTATTTCTAGAGTAGAGCCACCCCTGAATATTGGATGATAGAGTAAGAACATCAATTCTACTCTCCAATAATCATTACATTGCTTTTAACATTATTCCATATCAGTGATCTTTTGTTCCTGTATCTAAATTTTTATATATGGAAAGATGAAATTCAAAACATTTTAGTCATTGTTAACCAGAACATAAAATTTCTTATAAAAAATCGTTATGATAAGGTAGATCTGGATATGATTGTTCTCATATCCACAGGCATCATAGGGAAATCTTTACCCCTCCTAGAAGCAGAATTAGAATCAAGTTCGTGCTTAGCTTAAAAGTAACAATTCTAATTCTAAGTCCTTGCTTTTGATTTGATAACTCCTTCCTTGTTTCAGCGGTGAAAAATAAGTATACATAGGATACTAAGCCTTACAGCTGTAATTAATGGTAGATATCGAATGAAGACTTTGTACGTCATGTTTTTGGAAGTGATATTTAGGGTATCAGAGTAATGTCATGATTGCTGGGCCTTCTTTTTATATTGAATACTCTATGTTGCTCGGACTCTTCAAAAATGTTGGTCAGTGCGTTTCAAAGGAGGATCTCACACGGGTGTGGCAGAATTTTGGAGAATCCGAGCAACATCTATTATAAGCTCCCTCCTCACCACACCTCCCTGTCTTCCTCCAAGTTTATTACAGTCAATATGTTTAATCTGTCTTATCTCAAATTGCTTATAACACAGTACTTCTATTTCTTCTTGTTCGTGGTCAAACATATCAACTGTTTTTTTTTACCTTTTTTATGTAGAAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAGGTACTTCTTCTCACTTGAATTTCTTTTATGCAGCCAAAACATCTCCATGCTCGTAAAAGCATCTTTGTGAGCATGTCCTGATGATTGACAATATACGTTTAGCGATTCCGCCTGCTCCAGTACCTCATTTGATGTTTTTTTGTGTTGATTCTGCTTCTCAATGCATTAAAGTTTTTTCTCAATGCTCTCTGTTAAAAGCAGAAGTAATGCATCTGATTAATGTGTTTTAGGTTGGTAATATAATAGTACTTCTAGTATCGAGCTAACACTGCCCGTACAGCCGTGCCTATTACTAGCAAGAAAAGCTAAAAGCAGTAAGCTTGATTAATTTCAATTCATTGCATTTTGCACCTTTGGTGCACATTTTACTTTCTGGGAAAAATCATTTAAGTATTTTTTTGGTCCAAATCTGAATATTTTACTTTTTTAAAATTGAACTATTACCCTATGAAATGAATTTCTTTGCCGAAATTCCTAATAGCACCTCTAGTACTTAAGCAGAAACAATGGAGGATGTTCAGGATATAGAAGTCGTTAATTAGCTTTGTAAGTAATATATCCATTTTACTCCCTATAGAATGTTCATGTTTGAATGGAAACCTATTTTAGTCATTTTGTAAGAAGATAAGAAGTTCGGTAGCAAAAGTGAAAGGAAGGACAGGATGCAAACTGCAAAATATGCATAAAAAAAGAGGTGTGAAAAAAATGCAAATAGCTCGTTCAGTATTACCTTGAATATTAGCTTGCACTTCTTAAAATGAGCTGATAGAATCGCAAGGAGTGGCTGTTAACAGGTTAATAAGATTCAACTAGTTTGGTTTAGTAAAAAGAACATTAACGTGGTTTATTTAGTAGGGCTTGCTCTCAAATTAACGTTGATCATTGACCTCTGGGCTCTGGTTTCTTGACATTGTATGATGAACGTAACTCATGCTTGTCAAGCTGATATCTGAGTCGACCAACCAACAGCAACATTGAATGTATGGTTCAACTTAAATTCATCTCTGCACTTTCGTGTTTGTTATTTGTGAAATCGTTCATAATGGTGATTCTAATGAGAAGCCCTTGTTCTAGATTTTTTCGTATTGAACTTTGTGCATAGAGGATTAGTACATTCAGATTTCTATTAAGCTACCAGTGATAGTCTTTTGCTAGAAAATGTATAGACTGTGCCTCAATTGTGAGACAAGTCATTTTGCTTTAACACTTCATGACGTTTACTATGTTGTTGCTCATTAGTTGCCTTCTGTTTTCCAGGAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATT</genome_strand>
        <mrna_strand>TATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG.................................................................................ATGTGGATGAATTTTATAAGCAGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265624" ref_strand="+" ref_description="SGN-E265624 [cLEI-14-D17]">
      <seq>gaattggttagcgtattatcaaagtctctcaaactttcttcttcttttctcatatgacttttgacgacgctgcttgtaacccgcaaaatggtgtttaattattttttttaaaaaaagatggaatttggagctaaaggacagaagaaggcaaaacccattgatgtcttcaagaatgtcaagggcagatatactggtctaattaaagctctcacaacagatgtggatgaattttataagcagtgtgatcctgaaaaggagaacttaagcttgtatggactcccaaatgagcgatgggaggtcaatctgcctgctgaagattcaccaccaggccttccagagcctgttcttggtatcaactttgctagagagggaatggaacaaaaggagtggctttcttttgttgcttatcacagtgattcttggttgcttgctattgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="57581" stop="54446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57281" g_stop="57065" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56983" g_stop="56951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="250" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014">
            <donor d_prob="0.528" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54936" g_stop="54746" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="441" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E265624" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57281" e_stop="57065"/>
          <exon e_start="56983" e_stop="56951"/>
          <exon e_start="54936" e_stop="54746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTAAGCGTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAA-CCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAGGTTTCTTCTTCTTCTTTTTTTTTTTGTTATCATTTTTAATTTTGCTTTATTTAATCGATTTTGTTTTTTTTTTGTATTCAGATGTGGATGAATTTTATAAGCAGTGTGATCCTGGTAAGGATATTTCTTTTTAAGTTATGGTCTCTGTTTTGGGTTATGAGTGGAATAGGGTTGAAAATTTTCTGTTTCTGTAATAATTTGTACTATGTTATATGCATATTGTTAAATTCGGTATTTAAACTCGATGAGTTCAACTTTTAAGGTTAAATTAAGTGCTTTTAAAATTAAGGGTTCCTTAAAAACTGGATACAGTTGTATATGCATAGTATATAAATTTTGGATTATCCATTTTATAAGAAAAATTTGACTCTCCTCCAATGATTGTGGTATGAAAACTCCATCCGCCTTTGGGTTTATGTATTTTCGGATATATGTCTTTTTTCTTTAGATAGACATTGAAAGATTTTGGACAAAATTGAATCAACGAATAAGAACATAAATTCCACCCTCCAATGATCATAGTATGTAAACTCCATCCGCCTTTGGACTCTTGGTGTATGTCTTTTTTTGTAGTTATTTGAAGTTGAAAGATTTTGGAGTAATATTGGGAGAGGCGGATCTAGGATTTCGAGAACCTATATACACTGCTAAACAAAGGGAAACAAAATATATATTAAGTTGGAACTGTTCCTCGTCATTATAGATAAATAGCTCAACGTTCAACCAAGTGTTCATTCAATGCTTTTGGAGCATGGATAGCAACAGATAATTCTAGAAAATTTGTTTGGCGAAGAGATATGGGTTCATGCAGGGGAGGAGCTACATGGTACTTATCGAACCTCCTTCGTCGGAAAACTACACTGTATATAGAACATCGATTTATTCACTTATGAGTATAATTTAATAGTGAACTACCTCAACATAAGCTAAAAGGCTTGTTTCAGTGGTAAACTGCGTTCAAGATTCGGTCAAATCTTCTCGGATACGAGAGTTCGAGTCCGGGTAGCATCGTTCTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTGTGTTCTATCACATTTTATGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACCGAGTCCGGGTAGCATCGTTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACGTAGAATTGAATTTTATCTACTTAATTATATCCGACCTGATCCATTTATATCTGATCCGACCCGTTTATATGTGGGTAATATTAGCGTATTTACTTATTTTTTTGAACCCCTCAATGAAAATCCTGCCTCCACCACTGGGTTCATGTGCACACTATTTCTAGAGTAGAGCCACCCCTGAATATTGGATGATAGAGTAAGAACATCAATTCTACTCTCCAATAATCATTACATTGCTTTTAACATTATTCCATATCAGTGATCTTTTGTTCCTGTATCTAAATTTTTATATATGGAAAGATGAAATTCAAAACATTTTAGTCATTGTTAACCAGAACATAAAATTTCTTATAAAAAATCGTTATGATAAGGTAGATCTGGATATGATTGTTCTCATATCCACAGGCATCATAGGGAAATCTTTACCCCTCCTAGAAGCAGAATTAGAATCAAGTTCGTGCTTAGCTTAAAAGTAACAATTCTAATTCTAAGTCCTTGCTTTTGATTTGATAACTCCTTCCTTGTTTCAGCGGTGAAAAATAAGTATACATAGGATACTAAGCCTTACAGCTGTAATTAATGGTAGATATCGAATGAAGACTTTGTACGTCATGTTTTTGGAAGTGATATTTAGGGTATCAGAGTAATGTCATGATTGCTGGGCCTTCTTTTTATATTGAATACTCTATGTTGCTCGGACTCTTCAAAAATGTTGGTCAGTGCGTTTCAAAGGAGGATCTCACACGGGTGTGGCAGAATTTTGGAGAATCCGAGCAACATCTATTATAAGCTCCCTCCTCACCACACCTCCCTGTCTTCCTCCAAGTTTATTACAGTCAATATGTTTAATCTGTCTTATCTCAAATTGCTTATAACACAGTACTTCTATTTCTTCTTGTTCGTGGTCAAACATATCAACTGTTTTTTTTTACCTTTTTTATGTAGAAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTC</genome_strand>
        <mrna_strand>GAATTGGTTAGCGTATTATCAAAGTCTCTCAAACTTTCTTCTTCTTTTCTCATATGACTTTTGACGACGCTGCTTGTAACCCGCA-AAATGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG.................................................................................ATGTGGATGAATTTTATAAGCAGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620232" ref_strand="+" ref_description="SGN-E620232 [70931]">
      <seq>gttttgttgttctgtatacagagagactggacttcttaaagaagcaaaataatcagaggtgtttgaattctgggtttggttcaaccacaaactctgttcaattttcacaaaatcaacaagatttacagatgcaacaaatgtcgacatttcctggtcctcaaaattccaaggaattgaattatcatattcaagatcaggattcctcgtctactcaatcaacgagtcaatcatgtcctgaagctgctaatgaaggagaaagaaaaagccacgggaaaagcagtatgcctttgcgagcaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatatgtatcagaaaaattttgctgttgttccttttcctcatccggatccttactatcacggtctagttgctgcctatggaaatcaagtcatggttcaatcccaaatgttaggcatggtttctcctcgcgtgccacttccgcttgaccttaagcaagatgagcctatatttgtcaatgctaaacaatatcaggctatcctcaggcgtagacagtaccgtgctaggctggaggctcaaaacaaactctctaaaggacggaagccatatctccatgagtcccggcatcgtcatgcattgaatagggctaggggacccggtgggcgctttgtcaatatgaacgaagcctcgagagtccaaattcccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="63059" stop="58232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62760" g_stop="62665" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.802"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62664" i_stop="62242" i_length="423">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62241" g_stop="62209" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="120" r_length="29" r_score="0.606"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62208" i_stop="61596" i_length="613">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61595" g_stop="61419" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="297" r_length="177" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60638" g_stop="60547" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="389" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59027" g_stop="58860" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="629" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58859" i_stop="58637" i_length="223">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58636" g_stop="58532" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="736" r_length="107" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E620232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62760" e_stop="62665"/>
          <exon e_start="62241" e_stop="62209"/>
          <exon e_start="61595" e_stop="61419"/>
          <exon e_start="60638" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58860"/>
          <exon e_start="58636" e_stop="58532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAGGTTTGTTTATTAAGCTATTTGTTGCATGCAAAAATGGAGTTTTTTTTAATCTTTAACTTGTCCCGAAAGAGGGTTTTTTTTTCTTAGTTAATAATTATTTACTACTTTGTTTTTGTTGATTCTTTGATTCTTTAGGGATATACTAGTATACTACTCTGTTTGTTGCATTTTTCATTTCTTTTGAGTTTTTTAAAAAAAAGTGCATTTGTTTTGTCGGTTCTATGCCTGATTCTTTAGCATCTCTATTCATTGTCGAGAGATTTTACCATTTTTTAACAAGTAAAATTAGGCTCCTTTTTGGGTATAGATTTTGAAGTAGAAACTTGAAAATTTGAGCTTTTGATTTGATTCTTGCAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAATTTTTTGAAGCTTTGTGAATGTAAGTGTCAGAAACCCAAAAATTGGTCTGACACAGTGAGTTTGGAACTTGATATATTTGAAGACCATACTTCCAAAATTTGAGGCTAAACAGATAATTTGAAGATAGCATAGATGTTTCATCTTAGAGTCTCATAAGCAATGGCGAAGCCCAAATTTTCACTAAAGGCGAGTCAGAATAGGAAGAAGTACACACAAAGAAGCCAAGTTGATTCAACATGTAGTATATATAGATTTTAAAAGTTACCTAGCTACACAGTGTAGAAGTGTATTATATCTAAGTCTGAGGATTATGAAGTAATGTCTCAAGTATGTCGTATTTCTGATTTTACAAGTTATAGCCGGGGTAGATGAGGTGAAAGTAAGAAGATCCAATGTGTCAGTGTCATTTGAAGTCTTAAAGGGCAAACTATAAGAAGTGTGCTGGACTGGAATAAAAGTTGGAATATCTCATTTTTGAGCTGTTAATTGCATGTCATATCATCATGTATAAGCTGTAGAAACTCCTGGATGTTTCACTTCTCGAACAAGGACATTCAATGGTCAGAAAATGCAGGATCTCTTCGGAAAGGATCTTGAGCTTAGTAGTATCTCAACCCCATTTATTAGTGTTAATGCTCATCACTGACCTTTGTAGATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTTCGCTTGTTTATTGAGTTAGAATAGAGAGCTCATTTCCAGAAAGTAGGTTTTAATTCTTTGCTAGACAGTGATGATTGAACAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATCCTCAGGCGTAGACAATACCGTGCTAGGCTGGAAGCTCAAAACAAACTCTCTAAAGGACGGAAGGTAAGTGTTTGATGATGGTTCAGCTTCACCCTTCTTGTTGCTTAGTATTGAGTCACTCACTCGTACGAGTATACATGTGTTAATGTGCTTTCAGTGGATGATTACCCTTAACGTGGTGTAATATTATCTGCGTTGGGCCAAGCTTGCATGGTTTTCCCTAAAAGTTCTCACACTATTAAGTGTTACTTCAGTCATCTTATTTTTATTTGACCACAAATTTCAGCCATATCTCCATGAGTCCCGGCACCGGCATGCATTGAATAGGGCTAGGGGACCTGGTGGACGCTTTGTCAACATGAA-GAAGCCTGGAGAGTCCAAA-TCCCCCGAT</genome_strand>
        <mrna_strand>GTTTTGTTGTTCTGTATACAGAGAGACTGGACTT---CTTAAAGAAGCA--AAATAATCAGAGGTGTTTGAATTCTGGGTTTGGTTCAACCACAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGT---T-CAATTTTCACAAAATCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGATGCAACAAATGTCGACATTTCCTGGTCCTCAAAATTCCAAGGAATTGAATTATCATATTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTGCTAATGAAGGAGAAAGAAAAAGCCACGGGAAAAGCAGTATGCCTTTGCGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATATGTATCAGAAAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCATCCGGATCCTTACTATCACGGTCTAGTTGCTGCCTATGGAAATCAAGTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTAGGCATGGTTTCTCCTCGCGTGCCACTTCCGCTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATCCTCAGGCGTAGACAGTACCGTGCTAGGCTGGAGGCTCAAAACAAACTCTCTAAAGGACGGAAG...............................................................................................................................................................................................................................CCATATCTCCATGAGTCCCGGCATCGTCATGCATTGAATAGGGCTAGGGGACCCGGTGGGCGCTTTGTCAATATGAACGAAGCCTCGAGAGTCCAAATTCCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551174" ref_strand="+" ref_description="SGN-E551174 [TUS-55-K16]">
      <seq>cagactggagaaagttatctctttctagctttattgctttggggcgtaatgcctttacacccccacttaagcatcgaaagatatacacatactaaatgttgtgtcatgctgcccttcatttctcattcctttcgaagggcagacattcttattatctaaatcatctagctatttcctgacccacatgatatataaggttgatgaggttgtatttcctatttggcttactagctgttagtgagttaagttattttaaatagccacaactctccttttccctcaactttcacttatttcttttctgacttctgcattttcttactctgatcgtgtggatatctgcttggaccactccaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatacgtatcagacaaattttgctgttgttccttttcctcacccggatccttactatcacgatctagttgctgcctatggaaatccaaccttggttcaatcccaaatgttangcacggttgctcctcgggtgccacttccacttgaccttaagcaagatgagcctatatttgtcaatgctaaacaatatcaggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61295" stop="58623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60995" g_stop="60547" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59027" g_stop="58923" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="626" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E551174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60995" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</genome_strand>
        <mrna_strand>CAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTANGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688996" ref_strand="+" ref_description="SGN-E688996 [t3_tus_55_K16]">
      <seq>cagactggagaaagttatctctttctagctttattgctttggggcgtaatgcctttacacccccacttaagcatcgaaagatatacacatactaaatgttgtgtcatgctgcccttcatttctcattcctttcgaagggcagacattcttattatctaaatcatctagctatttcctgacccacatgatatataaggttgatgaggttgtatttcctatttggcttactagctgttagtgagttaagttattttaaatagccacaactctccttttccctcaactttcacttatttcttttctgacttctgcattttcttactctgatcgtgtggatatctgcttggaccactccaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatacgtatcagacaaattttgctgttgttccttttcctcacccggatccttactatcacgatctagttgctgcctatggaaatccaaccttggttcaatcccaaatgttaggcacggttgctcctcgggtgccacttccacttgaccttaagcaagatgagcctatatttgtcaatgctaaacaatatcaggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61295" stop="58623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60995" g_stop="60547" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59027" g_stop="58923" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="626" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E688996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60995" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</genome_strand>
        <mrna_strand>CAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213195" ref_strand="+" ref_description="SGN-E213195 [cLEC-72-H17]">
      <seq>gcagccaaatattgtggtgttctgtatacagagagactggacttggacttcttttaccaccaaagattcagaggtgcttgaattctgagtttggttcaaccataaagtttcactaaatcaacaagatttacagatgcaacaaatgtctacatttcctggtcctcagaataccaaggaactgaatcaccattttcaagatcaggattcctcgtctactcaatcaacgagtcaatcatgtcctgaagctcctaatgaacgagaaacaaaaatccatggtaaaaacaatatttctttgcgagcaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatacgtatcagacaaattttgctgttgttccttttcctcacccggatccttactatcacgatctagttgctgcctatggaaatccaaccttggttcaatcccaaatgttaagcacggttgctcctcgggtgccacttccacttgaccttaagcaagatgagcctatatttgtcaatgctaaacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="63070" stop="58633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62770" g_stop="62646" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62645" i_stop="61596" i_length="1050">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61595" g_stop="61419" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="302" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60638" g_stop="60547" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="394" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59027" g_stop="58933" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="561" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E213195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62770" e_stop="62646"/>
          <exon e_start="61595" e_stop="61419"/>
          <exon e_start="60638" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAGGTTTGTTTATTAAGCTATTTGTTGCATGCAAAAATGGAGTTTTTTTTAATCTTTAACTTGTCCCGAAAGAGGGTTTTTTTTTCTTAGTTAATAATTATTTACTACTTTGTTTTTGTTGATTCTTTGATTCTTTAGGGATATACTAGTATACTACTCTGTTTGTTGCATTTTTCATTTCTTTTGAGTTTTTTAAAAAAAAGTGCATTTGTTTTGTCGGTTCTATGCCTGATTCTTTAGCATCTCTATTCATTGTCGAGAGATTTTACCATTTTTTAACAAGTAAAATTAGGCTCCTTTTTGGGTATAGATTTTGAAGTAGAAACTTGAAAATTTGAGCTTTTGATTTGATTCTTGCAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAATTTTTTGAAGCTTTGTGAATGTAAGTGTCAGAAACCCAAAAATTGGTCTGACACAGTGAGTTTGGAACTTGATATATTTGAAGACCATACTTCCAAAATTTGAGGCTAAACAGATAATTTGAAGATAGCATAGATGTTTCATCTTAGAGTCTCATAAGCAATGGCGAAGCCCAAATTTTCACTAAAGGCGAGTCAGAATAGGAAGAAGTACACACAAAGAAGCCAAGTTGATTCAACATGTAGTATATATAGATTTTAAAAGTTACCTAGCTACACAGTGTAGAAGTGTATTATATCTAAGTCTGAGGATTATGAAGTAATGTCTCAAGTATGTCGTATTTCTGATTTTACAAGTTATAGCCGGGGTAGATGAGGTGAAAGTAAGAAGATCCAATGTGTCAGTGTCATTTGAAGTCTTAAAGGGCAAACTATAAGAAGTGTGCTGGACTGGAATAAAAGTTGGAATATCTCATTTTTGAGCTGTTAATTGCATGTCATATCATCATGTATAAGCTGTAGAAACTCCTGGATGTTTCACTTCTCGAACAAGGACATTCAATGGTCAGAAAATGCAGGATCTCTTCGGAAAGGATCTTGAGCTTAGTAGTATCTCAACCCCATTTATTAGTGTTAATGCTCATCACTGACCTTTGTAGATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTTCGCTTGTTTATTGAGTTAGAATAGAGAGCTCATTTCCAGAAAGTAGGTTTTAATTCTTTGCTAGACAGTGATGATTGAACAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</genome_strand>
        <mrna_strand>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTAAGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262649" ref_strand="+" ref_description="SGN-E262649 [cLEG-63-L16]">
      <seq>agactggagaaagtatctctttctagctttattgctttggggcgtaatgcctttacacccccacttaagcatcgaaagatatacacatactaaatgttgtgtcatgctgcccttcatttctcattcctttcgaagggcagacattcttattatctaaatcatctagctatttcctgacccacatgatatataaggttgatgaggttgtatttcctatttggcttactagctgttagtgagttaagttattttaaatagccacaactctccttttccctcaactttcacttatttcttttctgacttctgcattttcttactctgatcgtgtggatatctgcttggaccactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61294" stop="60341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60994" g_stop="60641" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E262649" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60994" e_stop="60641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCC</genome_strand>
        <mrna_strand>AGACTGGAGAAAG-TATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246404" ref_strand="+" ref_description="SGN-E246404 [cLEF-52-P15]">
      <seq>agatcaggattcctcgtctactcaatcaacgagtcaatcatggcctgaagctcctaatgaacgagaaacaaaaatccatggtaaaaacaatatttctttgcgagcaggtgaggatattcactattgttctgcatctagttttatatatacaacactttaagttatgtcagagaagttttgaaacaaagtaatcgtgttcatgattagcttgtttataactttttaccatacatcaattaggagaagctaattgataggagtgttgaagagaaatttgcaaattgattgtctagtacgtttatcaatttaagtacttccatgttgttcctccaaatgtgatcggctacaaccttttaaatgtggtggattgtaagtacttgttagcctgctaaggaggcaccacagaaatgaacttgaaatgtcggtacaaggcctgtactgcagattggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61825" stop="60775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61525" g_stop="61075" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E246404" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61525" e_stop="61075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</genome_strand>
        <mrna_strand>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGGCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTACGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGCTACAACCTTTTAAATGTGGTGGATTGTAAGTACTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738886" ref_strand="+" ref_description="SGN-E738886 [LC15BC07]">
      <seq>attaaatttaaattccttagcatgtggatttaatcccagtgcaaagagctttgtcggggctcaagcgactttgaggccgacatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacacatgcatggcatgtctatgggcttaggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgtgccacagccatattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgagtcaccgtacaagggaaggggagagtattgaccagttcttggtgatctgcattgcttggtggcttaaccctttgctgatattggaaacaaaattctgacagtagattgcatggatcatttgttggtgcattaattcttctgataaaatagctgcaatctgcacctgctggctgaaatggttttgttagcactcctgtataatgacgaattaattattctgcttttcataatcgtagtgttctagctcttaggtgttctttgtcatcatactacagattatttttcatcttttgggtttcttcaactttttttttttccttggaaaatatttaaccagcctcctatattgtcttattacttgntnaanaaaaaaaaaaaaaaaaaaaaaaaanancccctgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="66889" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="166" r_length="147" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="259" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="322" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64100" g_stop="63736" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="688" r_length="366" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63735" i_stop="63613" i_length="123">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63612" g_stop="63576" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="725" r_length="37" r_score="0.459"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63575" i_stop="62943" i_length="633">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.572" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62942" g_stop="62935" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="733" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E738886" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
          <exon e_start="64100" e_stop="63736"/>
          <exon e_start="63612" e_stop="63576"/>
          <exon e_start="62942" e_stop="62935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCTGTAAGAATCTTTTCTTTGCAATTGTACCTTCTACTTTTTCAGTATTGCGCAGTTACAGTCTTCTGGCCATTTTAGTAGCTCTCAATGTGATGGTCTATTTTGGGTACCTTGTTTGACAATGAGTTAATGATCACAATGGTCCTTGTCAAAAATGGTAACGCTAAAGAGGAATTTTACCAAAAATACAAGGCAATACAATAACAATAATAAGTAATAACTATGCCTTAATACCGAGCAAGTTATCGGTTATATGAATCCATAATATCCAAGTCACTGCATTTGAATTTGTCTCTATCCAATATGATAAAACAAAATTTGTTCTTATAGCACTAGAAATTCTCTACTTTCTGACATGGTAGCATGACTAAGTTAGACCCAACTAATTGGTATCTCCTGTTGAGATCTTTTTTTCCATACCCTTTTTTTCCGCTAGGTCTGCTTAGATCTCAAGAGATTGTAGGTCTTGGGGGGATGTCTTCCTTTCTTTCATGTGAGTTTGGGTCTACCTCAGTTCCTTTTAACTCATACAGTTACCAATTTACCATGGTTTGAGGTTTTACAGGACCTACATCCAAAGGTTGATATAAGACATTCTTTTCAAGGAAAAGTTCTCATTAATAATAACTAGGCTAAACTTGGCCATAAACGAGAGGCATACCAAAAAGGGGGAAACATACAAAACATGGTTTTCTCCAAAAGACACCGTAGCCTCCATACAAACAGGAACTACAATGGGTGTGTTACGACCCGTTTTTAGCTAAGTCATAAATGCTTCATAATTTGGCTATTTATTTTGCAAAAATAGAAGAGCTGTCACATAATTTCTAATGGAATTAGTAAATTAGTCACCGCCTCCAAGCCGAGATTAATGCAACCACTTCATCTAGACTACTTATGATATAAGTTAATTTAATGCCAAAAAAAATAATTATTTATGACATTACCTGTTTCAATAAATAAAAATAGAAAATAATTACTTATGATCATTCAAGTTATTGTAGATGCATTTGGGGAAATGAACACTGTCAAGTAAAGTTGTTGTAATGTAGTAGAATTATGTTTCTTAATCTGATGTTGCAGTGATTTATTTCGTATCTTTAAATGTCAACAGTACTTGCAAAAAGATCTTGTGTGCATATGATAATAGGATTACATACTATTAGCTTTTAGCTTTCTTTCTTTATCTGTCTGGATGCCAACAGGAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAAC-TTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACATGATAGTTTGGTGTGTAAAATGATGGTTCTATGGACAAATCTTTGCAGTTCTTGTCAAGTCTGATTTTAGTATTGGTGTCACTTCCTGCATTTTAACTGTTATCCTTGTCTTTGCATATTCGTGGCACTGTTAAAGAAGAGGAGGCATAGATAGATAGTCCTTTGGTGACATGTTATTAAAATGCAAAAAAAGAATCCATTTTTTTTCATTATTATATTAACCTACGGGTCCTAATTTCTCTGAAGTGATTAAAGCTTAGAAATAATATACCAATAAATAACATAAGTCTAATTTCAATCTTTAATGTATTCCGTATGGTAATTTATCATTCGTTTTCAAACCGTTACTCAAATAATCCATATTTTTTCATTATTGTATTAACCTACGGCTCCCAATTTTCTATTAAAATTGTGATTTTGTTTTACAAAAAATAATTTATAAAGATGCTTCCCATTAAAATTTTCCTCTACTATTAAAAGATACATCAGGTGATTTCCAATTATGTGAAGTTTAATGTTAGTTATTCCATTTTATCCATATATTATATTATTAGTTATATGAATTTCTAAATAAAACAAAGAAGGTGTATTTTAACAGTAATTTTTTTTTTTTTAACCTTTTTAGAGCTTTCATCCTTTTTGTTTTCTTGGTGATTTAAATTTGCAATCAAATTAAAAATGACAATGTTTATTATTTGAATAACTTTCGTCTATTTTAATCATTATAATTATATTACTCATAAAAAATTTAATACCGTCATAACTAATCTCGAAACAAATCTCTTTTTATTATGTTAGAGGAAGAG</genome_strand>
        <mrna_strand>GCATGTGGATTTAATCCCAGTGCAAAGAGCTTTGTCGGGGCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAACTTTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACTTGNTN...........................................................................................................................AANAAAAAAAAAAAAAAAAAAAAAAAANANCCCCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590289" ref_strand="+" ref_description="SGN-E590289 [43881]">
      <seq>cttccaagagtcgagacaataccagatctgctaattcttgtgtcagacctagcagtggtactttatcctctattcatggagcaggtgctgcgtctagcaatggattatcacgtagctcttccgtgagttcattttcttcagaaaaatccacgaagtccaccttaaatccacatgctaaggaatttaaatttaatcccagtgcgaagagctttgtcccatctcaagcgactttgagaccggcatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacagatgcatggcatgtctatgggtgttggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgcgccacagccgtattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgaatcaccgtacaatggaagaggagagtattgaccagttcttggtgacctgcatcacttggtggcttaaccctttgctgatactggaaacaaatttctgacagtagattgcatggatcatttattggtgcataaagtgttctgataaaatagctgcaatctgcacctgctggctgaaatggttctgttagcactcctgtataatgaagaattaattattctgcttttcgtaattgtagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="67175" stop="63561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66875" g_stop="66697" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="326" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="419" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="482" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64100" g_stop="63861" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="722" r_length="240" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E590289" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66875" e_stop="66697"/>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
          <exon e_start="64100" e_stop="63861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAGGTAAGAGTTCTTCTTTGATACCTTTTCCTATCCAGCAAACCATGATGGTCAGCAAGCAGTCATTTCACAGTTTTAATGGGCTCTTAGCTTACACCATCCAGTTATGCTTATGTTGAATTTTCTGTCAGGAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCTGTAAGAATCTTTTCTTTGCAATTGTACCTTCTACTTTTTCAGTATTGCGCAGTTACAGTCTTCTGGCCATTTTAGTAGCTCTCAATGTGATGGTCTATTTTGGGTACCTTGTTTGACAATGAGTTAATGATCACAATGGTCCTTGTCAAAAATGGTAACGCTAAAGAGGAATTTTACCAAAAATACAAGGCAATACAATAACAATAATAAGTAATAACTATGCCTTAATACCGAGCAAGTTATCGGTTATATGAATCCATAATATCCAAGTCACTGCATTTGAATTTGTCTCTATCCAATATGATAAAACAAAATTTGTTCTTATAGCACTAGAAATTCTCTACTTTCTGACATGGTAGCATGACTAAGTTAGACCCAACTAATTGGTATCTCCTGTTGAGATCTTTTTTTCCATACCCTTTTTTTCCGCTAGGTCTGCTTAGATCTCAAGAGATTGTAGGTCTTGGGGGGATGTCTTCCTTTCTTTCATGTGAGTTTGGGTCTACCTCAGTTCCTTTTAACTCATACAGTTACCAATTTACCATGGTTTGAGGTTTTACAGGACCTACATCCAAAGGTTGATATAAGACATTCTTTTCAAGGAAAAGTTCTCATTAATAATAACTAGGCTAAACTTGGCCATAAACGAGAGGCATACCAAAAAGGGGGAAACATACAAAACATGGTTTTCTCCAAAAGACACCGTAGCCTCCATACAAACAGGAACTACAATGGGTGTGTTACGACCCGTTTTTAGCTAAGTCATAAATGCTTCATAATTTGGCTATTTATTTTGCAAAAATAGAAGAGCTGTCACATAATTTCTAATGGAATTAGTAAATTAGTCACCGCCTCCAAGCCGAGATTAATGCAACCACTTCATCTAGACTACTTATGATATAAGTTAATTTAATGCCAAAAAAAATAATTATTTATGACATTACCTGTTTCAATAAATAAAAATAGAAAATAATTACTTATGATCATTCAAGTTATTGTAGATGCATTTGGGGAAATGAACACTGTCAAGTAAAGTTGTTGTAATGTAGTAGAATTATGTTTCTTAATCTGATGTTGCAGTGATTTATTTCGTATCTTTAAATGTCAACAGTACTTGCAAAAAGATCTTGTGTGCATATGATAATAGGATTACATACTATTAGCTTTTAGCTTTCTTTCTTTATCTGTCTGGATGCCAACAGGAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTG</genome_strand>
        <mrna_strand>CTTCCAAGAGTCGAGACAATACCAGATCTGCTAATTCTTGTGTCAGACCTAGCAGTGGTACTTTATCCTCTATTCATGGAGCAGGTGCTGCGTCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTTTCTTCAGAAAAATCCACGAAGTCCACCTTAAATCCACATGCTAAG................................................................................................................................GAATTTAAATTTAATCCCAGTGCGAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGACCGGCATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACAGATGCATGGCATGTCTATGGGTGTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGCGCCACAGCCGTATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCGTACAATGGAAGAGGAGAGTATTGACCAGTTCTTGGTGACCTGCATCACTTGGTGGCTTAACCCTTTGCTGATACTGGAAACAAATTTCTGACAGTAGATTGCATGGATCATTTATTGGTGCATAAAGTGTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTCTGTTAGCACTCCTGTATAATGAAGAATTAATTATTCTGCTTTTCGTAATTGTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301972" ref_strand="+" ref_description="SGN-E301972 [cLEX-3-H2]">
      <seq>acgaagtccacattaaatccacatgctaaggaatttaaatttaatcccagtgcaaagagctttgtcccatctcaagcgactttgaggccgacatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacacatgcatggcatgtctatgggcttaggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgtgccacagccatattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgagtcaccgtacaagggaaggggagagtattgaccagttcttggtgatctgcattgcttggtggcttaaccctttgctgatattggaaacaaaattctgacagtagattgcatggatcatttgttggtgcattaattcttctgataaaatagctgcaatctgcacctgctggctgaaatggttttgttagcactcctgtataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="67026" stop="63595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66726" g_stop="66697" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="177" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="270" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64100" g_stop="63895" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="539" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E301972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66726" e_stop="66697"/>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
          <exon e_start="64100" e_stop="63895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGTCCACATTAAATCCACATGCTAAGGTAAGAGTTCTTCTTTGATACCTTTTCCTATCCAGCAAACCATGATGGTCAGCAAGCAGTCATTTCACAGTTTTAATGGGCTCTTAGCTTACACCATCCAGTTATGCTTATGTTGAATTTTCTGTCAGGAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCTGTAAGAATCTTTTCTTTGCAATTGTACCTTCTACTTTTTCAGTATTGCGCAGTTACAGTCTTCTGGCCATTTTAGTAGCTCTCAATGTGATGGTCTATTTTGGGTACCTTGTTTGACAATGAGTTAATGATCACAATGGTCCTTGTCAAAAATGGTAACGCTAAAGAGGAATTTTACCAAAAATACAAGGCAATACAATAACAATAATAAGTAATAACTATGCCTTAATACCGAGCAAGTTATCGGTTATATGAATCCATAATATCCAAGTCACTGCATTTGAATTTGTCTCTATCCAATATGATAAAACAAAATTTGTTCTTATAGCACTAGAAATTCTCTACTTTCTGACATGGTAGCATGACTAAGTTAGACCCAACTAATTGGTATCTCCTGTTGAGATCTTTTTTTCCATACCCTTTTTTTCCGCTAGGTCTGCTTAGATCTCAAGAGATTGTAGGTCTTGGGGGGATGTCTTCCTTTCTTTCATGTGAGTTTGGGTCTACCTCAGTTCCTTTTAACTCATACAGTTACCAATTTACCATGGTTTGAGGTTTTACAGGACCTACATCCAAAGGTTGATATAAGACATTCTTTTCAAGGAAAAGTTCTCATTAATAATAACTAGGCTAAACTTGGCCATAAACGAGAGGCATACCAAAAAGGGGGAAACATACAAAACATGGTTTTCTCCAAAAGACACCGTAGCCTCCATACAAACAGGAACTACAATGGGTGTGTTACGACCCGTTTTTAGCTAAGTCATAAATGCTTCATAATTTGGCTATTTATTTTGCAAAAATAGAAGAGCTGTCACATAATTTCTAATGGAATTAGTAAATTAGTCACCGCCTCCAAGCCGAGATTAATGCAACCACTTCATCTAGACTACTTATGATATAAGTTAATTTAATGCCAAAAAAAATAATTATTTATGACATTACCTGTTTCAATAAATAAAAATAGAAAATAATTACTTATGATCATTCAAGTTATTGTAGATGCATTTGGGGAAATGAACACTGTCAAGTAAAGTTGTTGTAATGTAGTAGAATTATGTTTCTTAATCTGATGTTGCAGTGATTTATTTCGTATCTTTAAATGTCAACAGTACTTGCAAAAAGATCTTGTGTGCATATGATAATAGGATTACATACTATTAGCTTTTAGCTTTCTTTCTTTATCTGTCTGGATGCCAACAGGAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGA</genome_strand>
        <mrna_strand>ACGAAGTCCACATTAAATCCACATGCTAAG................................................................................................................................GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569604" ref_strand="+" ref_description="SGN-E569604 [14064]">
      <seq>ttttcttcagaaaaatccacgaagtccaccttaaatccacatgctaaggaatttaaatttaatcccagtgcgaagagctttgtcccatctcaagcgactttgagaccggcatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacatatgcatggcatgtctatgggtgttggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgcgccacaggcgtattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgaatcaccgtacaatggaagaggagagtattgaccagttcttggtgacctgcatcacttggtggcttaaccctttgctgatactggaaacaaatttctgacagtagattgcatggatcatttattggtgcataaagtgttctgataaaatagctgcaatctgcacctgctggctgaaatggttctgttagcactcctgtataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="67044" stop="63596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66744" g_stop="66697" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="195" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="288" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="351" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64100" g_stop="63896" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="556" r_length="205" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E569604" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66744" e_stop="66697"/>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
          <exon e_start="64100" e_stop="63896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAGGTAAGAGTTCTTCTTTGATACCTTTTCCTATCCAGCAAACCATGATGGTCAGCAAGCAGTCATTTCACAGTTTTAATGGGCTCTTAGCTTACACCATCCAGTTATGCTTATGTTGAATTTTCTGTCAGGAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCTGTAAGAATCTTTTCTTTGCAATTGTACCTTCTACTTTTTCAGTATTGCGCAGTTACAGTCTTCTGGCCATTTTAGTAGCTCTCAATGTGATGGTCTATTTTGGGTACCTTGTTTGACAATGAGTTAATGATCACAATGGTCCTTGTCAAAAATGGTAACGCTAAAGAGGAATTTTACCAAAAATACAAGGCAATACAATAACAATAATAAGTAATAACTATGCCTTAATACCGAGCAAGTTATCGGTTATATGAATCCATAATATCCAAGTCACTGCATTTGAATTTGTCTCTATCCAATATGATAAAACAAAATTTGTTCTTATAGCACTAGAAATTCTCTACTTTCTGACATGGTAGCATGACTAAGTTAGACCCAACTAATTGGTATCTCCTGTTGAGATCTTTTTTTCCATACCCTTTTTTTCCGCTAGGTCTGCTTAGATCTCAAGAGATTGTAGGTCTTGGGGGGATGTCTTCCTTTCTTTCATGTGAGTTTGGGTCTACCTCAGTTCCTTTTAACTCATACAGTTACCAATTTACCATGGTTTGAGGTTTTACAGGACCTACATCCAAAGGTTGATATAAGACATTCTTTTCAAGGAAAAGTTCTCATTAATAATAACTAGGCTAAACTTGGCCATAAACGAGAGGCATACCAAAAAGGGGGAAACATACAAAACATGGTTTTCTCCAAAAGACACCGTAGCCTCCATACAAACAGGAACTACAATGGGTGTGTTACGACCCGTTTTTAGCTAAGTCATAAATGCTTCATAATTTGGCTATTTATTTTGCAAAAATAGAAGAGCTGTCACATAATTTCTAATGGAATTAGTAAATTAGTCACCGCCTCCAAGCCGAGATTAATGCAACCACTTCATCTAGACTACTTATGATATAAGTTAATTTAATGCCAAAAAAAATAATTATTTATGACATTACCTGTTTCAATAAATAAAAATAGAAAATAATTACTTATGATCATTCAAGTTATTGTAGATGCATTTGGGGAAATGAACACTGTCAAGTAAAGTTGTTGTAATGTAGTAGAATTATGTTTCTTAATCTGATGTTGCAGTGATTTATTTCGTATCTTTAAATGTCAACAGTACTTGCAAAAAGATCTTGTGTGCATATGATAATAGGATTACATACTATTAGCTTTTAGCTTTCTTTCTTTATCTGTCTGGATGCCAACAGGAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATG</genome_strand>
        <mrna_strand>TTTTCTTCAGAAAAATCCACGAAGTCCACCTTAAATCCACATGCTAAG................................................................................................................................GAATTTAAATTTAATCCCAGTGCGAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGACCGGCATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACATATGCATGGCATGTCTATGGGTGTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGCGCCACAGGCGTATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCGTACAATGGAAGAGGAGAGTATTGACCAGTTCTTGGTGACCTGCATCACTTGGTGGCTTAACCCTTTGCTGATACTGGAAACAAATTTCTGACAGTAGATTGCATGGATCATTTATTGGTGCATAAAGTGTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTCTGTTAGCACTCCTGTATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313436" ref_strand="+" ref_description="SGN-E313436 [cTOA-13-K22]">
      <seq>aaaagatcacaggttcttttagtgaaaagggggctgttgggtcttccaagagtcgagacaacacccgatctgttaattcttgtgttagacctagcagttctgctttatcttctattgatagagcaggtgctgcatctagcaatggattatcacgtagctcttccgtgagttcattatcttcagaaaaatccacgaagtccacattaaatccacatgctaaggaatttaaatttaatcccagtgcaaagagctttgtcccatctcaagcgactttgaggccgacatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacacatgcatggcatgtctatgggcttaggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgtgccacagccatattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgagtcaccgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="67217" stop="65002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66917" g_stop="66697" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="368" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="461" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="524" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E313436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66917" e_stop="66697"/>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAGGTAAGAGTTCTTCTTTGATACCTTTTCCTATCCAGCAAACCATGATGGTCAGCAAGCAGTCATTTCACAGTTTTAATGGGCTCTTAGCTTACACCATCCAGTTATGCTTATGTTGAATTTTCTGTCAGGAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT</genome_strand>
        <mrna_strand>AAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAG................................................................................................................................GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577039" ref_strand="+" ref_description="SGN-E577039 [32243]">
      <seq>agaaaccagattttcagcagttgttagaggggttgatgatagtggatatggtgattgtgaggacatactgttggattcgcgtaatgatgaaacatttcaatgtatctctagttcttctatggggaagtcattcactggtacgagtgttggggaagttgttggcggtgtggaattctcatcaagatcttcctcagtggatgaattgcaatcttctcagttgagtaccagcagggatgtctatcagacttgctatgatgatcatagcaaacagtcatcagctgaacatgttcctcaaagtgccacgaagatggatgagagcagggggcacaaaatcacgtgcagtgaacatgatggagctagttgcaatgaagaggagacaagaatgcaaatgttagctgaaggggctcatacatcaatacctgaagattccaagtcatcactaagagtgaaaaaggaaaccttggataagggtgtgtcgtctatggatgtctctgcattgtctccccttcctgaatttcaggaaaagatcacaggttcttttagtgaaaaagggggctgtcgggtcttccaagcagtcgagacaataccagatctgctaattcttgtgtcagacctagcagtctgttttatcctctattcatggagcaggtgctgcatctagcaatggattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="70190" stop="66466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69890" g_stop="69695" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69694" i_stop="68646" i_length="1049">
            <donor d_prob="0.918" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68645" g_stop="68521" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="321" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68520" i_stop="68365" i_length="156">
            <donor d_prob="0.775" d_score="0.94"/>
            <acceptor a_prob="0.671" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68364" g_stop="68295" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="391" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68294" i_stop="68182" i_length="113">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68181" g_stop="68148" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="425" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68147" i_stop="67014" i_length="1134">
            <donor d_prob="0.742" d_score="0.00"/>
            <acceptor a_prob="0.579" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67013" g_stop="66766" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="674" r_length="249" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E577039" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69890" e_stop="69695"/>
          <exon e_start="68645" e_stop="68521"/>
          <exon e_start="68364" e_stop="68295"/>
          <exon e_start="68181" e_stop="68148"/>
          <exon e_start="67013" e_stop="66766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCAGATTTTCAGCAGTTGTTAGAGGGGTTGATGATAGTGGATATGGTGATTGTGAGGACATACTGTTGGATTCACGTAATGATGAAACATTTCAATGTATCTCTAGTTCTTCTATGGGAAAGTCATTCACTGGTATGAGTGTTGGGGAAGTTGTTGATGGTGTGGAATTCTCATCAAGATCTTCCTCTTTGGTATGTGTATGTTCATTTAGGTTCATTGTGTCTTGCGTAAATTATTCCTCTGTGGTATGAGAACTTTATTCCTTTGAATCCATGTACTACTAGTTTCGGTTTTACGGCTGTGCTTAATTTATTTTCACTAGCATAGGCATTTAGTTCCGATATTCCTGATATAGGAGAAGTATTTTCTAACTAATCAAATGTCTCATCTAGCTGGGAACTTTATTGCGGAGTAATGCTGTGAAAGTGCTGGCAAATACGAGAACTAGCCATGTCTTGTAGACACTAAGTCCTGCTAGCAAGAAATTTCCCTAGCTTTTCATAGTTCCAATAAAGTGGATTTAAGTGGCACTCAAAAAATTTTCCCTAGCTTTTCATATTTCCAGCAAAGTGGATTGAAGTGGCACTCAAGAATGTAACCTAGTGGTCAATGGAGTTGGAATCGACTGCCTGATTAACATAACAATCAACAAATATCAGGTGCTATGGAAGAATTAGGCACCGCAAAGAGGTTTAGTGCGGTCATATGAGCTTTTGAGAAGCTAATTAGTTACAAGATTTGCTAGCACCATATCCATACAGGAGATACTATACTGACTTGCTATGGGGTGGGTGGACAATGTCACATTAGTCGTTTCTAGTCTTCATCATCAATTCGATCTATACTACAGTTAGGTGGAGGAATGGTAAGAGAACAATTTCAATCTGTTCTCAACTTGACATATTCGTGTAAATCATATTCAATCATGTGTTTCTTCCAAATCTTCGACATCTTCAGCGGAGTTTTCATCTTCCTTCTGGAGTCTGCGAGTCAAATCCCAACCAAGGAAAAAAACTTCAGATGATTCTTTTCGTCATTCTATGATTATTGAGTTTCCGGTACCTCACAGTAGATTAGTTGAATTGTGCACAACCTGACCTCATAAGCCATCACTTATAAAAATAAAATTAAAAAAATCAGAATGGTGGTTTAAAGTGCCTGCATTCATGTGATAGCTCTATGCCTTTGGGTTTCTGTTCGTGTCTTAAGATTACATTGTTGGTGTTAATCTTTTCTGTAGGATGAATTGCAATCCTCTCAGTTGAGTACCAGCAGGGATGTCTATCAGACTTACTATGATGATCATAGCAAACAGTCATCAGCTAAACATGTTCCTCAAAGTGCCTCAAAGATGGATGAGAGCAGGTTGTTAACAGTGTCTCTCATTCTGACATTCCTTCTCTACTTAGTCTGAGAAGTCTACATTCTGGTATCATGTTTATTACTGTTAAAAGAGAAATACAACAATCCTTACCCCTTTAGTAGTCGAATTTTGTTGCTCCTAACCAAGTTGTCCTTTAGGGGGCACAAGATCACTTTCAATGAACATGATGGAGCTAGTTGCAATGACGAGGAGACGAGAATGCAAATGGTAGCTTAACATTGACCCCTTTATATACTTATTGCTGTCATTGAAATCTACATCTTTGTTATTCCTTTTTTTCTTGCTTTGAAAGCTCTCATGGTCTGTACTTGTTCTTGTAGTTAGCTGAAGGGGCGCATACATCGATACCCGAAGGTGAGTTTGTCTTGAGGTACTCGAATAGTCAAATATCCATGCCCGCATTTTGTAAGAAACTAAGAATAGGGTTTTGATAAATAAATATTTTCCTTCTTGCTACACGCTGCTAGCTGACTTGTAGCCTATCATCTTCTCTCTCCTCAAAATAGCTCCTCCAGTGGATTGATATTTAATAGGATGTCATAATGTCACTTCGATCTTTTGCCATCAGTAAAACAAAAAAAAACTGTCTTTTTTCTGAACTCTGCCTGCCAGCTAAAAAGAAGAAGGGGTGGGTAGTGAAGGTCTAGGTATGCTTCATTAGTTCTTGATAGATTTTGTACATCTCTGAACTTCTACTTAAAGGAATTGTGTACTGAGCGGTCAAAGTAATAGATTAATTTTGGTGGCATTACTTTTATGGATATTCAATCAAAACAAACTTGTATGGATGTTCATGTGAATCAAGGATGCTATTGGTTCCTTAAAGATATTCCTTTTTAATGGAAATTAGCCTTAACGGTCTCCCTTTCTTACTATGTCTTCCTTTCTTACTGTAGTTCATTTCCTTTACAGTCATGCTTGTGTAATGATAGTTACTTCTAGGCTGTTGTACAGTATACTGATTCATCACAATTGTCGTGCTTTGCGTTGTGTCTGTTCTTTCTATCTTTTGTGTTTAAAAACATGTTTCTTTGACCCGTTCTATTGAGGTTTAAGCAATGTTATCAAAGGTGCTCTTAAACCGCGCTTAATCCCTGAAGCGAGGCTCATAACTCGTTGAGCGCTTTGCCTTGCTTAATGTGCACTTTAGCTTCGTCATCAAGGAACAAAGGCATACTTATCCTTTCCAATGAGCCTCTTCTGAAGTGGCGCCACTAAAGTATTGACATTTCACTTTATCCTAATTTGTATTTAAATCAATTTCCCTGATCACATATTTTTCATGCATGCTTGTAATTATTAGTCTTGACCATATATATTTTGTATTTTATCCCTTTGTGCCTTTTCTTTTTCATGAGAGTCCATGCTTTATTTGTGCCTAAAGCTGCAACGTACCTTAGAGCTTTTTTGCGCTTTTTGCTTTTAATAACATTGGTTAAAAATTATCTTTCATGCATCTCTGTTGATTCCTAAGGCTTTTACATGTAGATTCAAAGTCATCACTAAGAGTGAAAATGGAAACCTTGGATAAGGGTGTGTCATCTATGAATGTCTCTGCATTGGCCCCCGTTCCTGAATTCCAGGAAAAGATCACAGGTTCTTTTAGTG-AAAAGGGGGCTGTTGGGTCTTCCAAG-AGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCA</genome_strand>
        <mrna_strand>AGAAACCAGATTTTCAGCAGTTGTTAGAGGGGTTGATGATAGTGGATATGGTGATTGTGAGGACATACTGTTGGATTCGCGTAATGATGAAACATTTCAATGTATCTCTAGTTCTTCTATGGGGAAGTCATTCACTGGTACGAGTGTTGGGGAAGTTGTTGGCGGTGTGGAATTCTCATCAAGATCTTCCTCAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTGCAATCTTCTCAGTTGAGTACCAGCAGGGATGTCTATCAGACTTGCTATGATGATCATAGCAAACAGTCATCAGCTGAACATGTTCCTCAAAGTGCCACGAAGATGGATGAGAGCAG............................................................................................................................................................GGGGCACAAAATCACGTGCAGTGAACATGATGGAGCTAGTTGCAATGAAGAGGAGACAAGAATGCAAATG.................................................................................................................TTAGCTGAAGGGGCTCATACATCAATACCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAGTCATCACTAAGAGTGAAAAAGGAAACCTTGGATAAGGGTGTGTCGTCTATGGATGTCTCTGCATTGTCTCCCCTTCCTGAATTTCAGGAAAAGATCACAGGTTCTTTTAGTGAAAAAGGGGGCTGTCGGGTCTTCCAAGCAGTCGAGACAATACCAGATCTGCTAATTCTTGTGTCAGACCTAGCAG-TCTGTTTTATCCTCTATTCATGGAGCAGGTGCTGCATCTAGCAATGGATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474814" ref_strand="+" ref_description="SGN-E474814 [cSTB-38-E11]">
      <seq>catctttcaatttttcttcgacacagagagcatcgtcgtctccgatcaatccccctttcttgatcgctaccttcaatctctcgctctctatatatctatctattctgtgtaggctgaagctgagctgaactgtatcctgcttatatctttcgggaacaatatgcagcaagctgttcagtcaaagtccgttgccaatggatttggcagtcggaaaggcgaaaaagaaatggggacaaggttggagggtagaatgcagtctacaaaaacgacttccagcaagtcgactgctgtaggtaaaaggggatcatatgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaatggatggatctgtgttttcagggatatttcatgcaacaaatgctgacaaagattttggtattgttctgaaactggcccacttgataaaagatggttcccaggagagtaagaatactcctgaatctctggtcaaacctccatctaagactttgattataccgggtaaagagcttgtacaagttttagcaaagggtgtgcctgcaactttagatgtcttcagagctgaattgctgcgggaaaaacagttggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74851" stop="71822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74551" g_stop="74446" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429">
            <donor d_prob="0.667" d_score="0.84"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="293" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="440" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72484" g_stop="72351" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="574" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72350" i_stop="72184" i_length="167">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72183" g_stop="72122" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="636" r_length="62" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E474814" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74551" e_stop="74446"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72351"/>
          <exon e_start="72183" e_stop="72122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTCAATTTTTCTTCGACAC--AGAGCATCGTCGTCTCCGATCAATC-CCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCAAGTAAGACTTTGATTATACCGGGTAAAGAGCTTGTGCAAGTTTTAGCAAAGGTTTGTATGTTACTTCTATGATTTTAACTTCCAAATATTGTATGTGGTGGCATTTTATGCAAGACTAAGCTATAGATCACTGTTAACAGATGCTAGAATCAGATTTTATGTCTTGTCTATATGTTAGACAGTCAAAGTATAATAATGAGACTATTGCTTTGGAATAGGGTGTTCCTGCCTCTTTAGATGTCTTCAGAGCTGAATTGCTGCGGGAAAAACAGCTGGAACT</genome_strand>
        <mrna_strand>CATCTTTCAATTTTTCTTCGACACAGAGAGCATCGTCGTCTCCGATCAATCCCCCTTTCTTGATCGCTACCTTCAATCTCTC--G--CTCTCTATATATCTATCTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGCTGAAGCTGAGCTGAACTGTATCCTGCTTATATCTTTCGGGAACAATATGCAGCAAGCTGTTCAGTCAAAGTCCGTTGCCAATGGATTTGGCAGTCGGAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGGGTAGAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACTGCTGTAG.....................................................................GTAAAAGGGGATCATATGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAATGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTGTTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCAGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCATCTAAGACTTTGATTATACCGGGTAAAGAGCTTGTACAAGTTTTAGCAAAG.......................................................................................................................................................................GGTGTGCCTGCAACTTTAGATGTCTTCAGAGCTGAATTGCTGCGGGAAAAACAGTTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561586" ref_strand="+" ref_description="SGN-E561586 [17050]">
      <seq>catctttcaatttttcttcgacacagagagcatcgtcgtctccgatcaatccccctttcttgatcgctaccttcaatctctcgctctctatatatctatctattctgtgtaggctgaagctgagctgaactgtatcctgcttatatctttcgggaacaatatgcagcaagctgttcagtcaaggtccgttgccaatggatttggcagtcggaaaggcgaaaaagaaatggggacaaggttggagggtagaatgcagtctacaaaaacgacttccagcaagtcgactgctgtaggtaaaaggggatcatatgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaatggatggatctgtgttttcaggggatatttcatgcaacaaatgctgacaaagattttggtattgttctgaaactggcccacttgataaaagatggttcccaggagagtaagaatactcctgaatctctggtcaaacctccatctaagactttgattataccgggtaaagagcttgtacaagttttagcaaagggtgtgcctgcaactttagatgtcttcagagctgaattgctgcgggaaaaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74851" stop="71828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74551" g_stop="74446" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429">
            <donor d_prob="0.667" d_score="0.84"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="293" r_length="188" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="441" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72484" g_stop="72351" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="575" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72350" i_stop="72184" i_length="167">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72183" g_stop="72128" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="631" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E561586" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74551" e_stop="74446"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72351"/>
          <exon e_start="72183" e_stop="72128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTCAATTTTTCTTCGACAC--AGAGCATCGTCGTCTCCGATCAATC-CCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCA-GGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCAAGTAAGACTTTGATTATACCGGGTAAAGAGCTTGTGCAAGTTTTAGCAAAGGTTTGTATGTTACTTCTATGATTTTAACTTCCAAATATTGTATGTGGTGGCATTTTATGCAAGACTAAGCTATAGATCACTGTTAACAGATGCTAGAATCAGATTTTATGTCTTGTCTATATGTTAGACAGTCAAAGTATAATAATGAGACTATTGCTTTGGAATAGGGTGTTCCTGCCTCTTTAGATGTCTTCAGAGCTGAATTGCTGCGGGAAAAACAGCT</genome_strand>
        <mrna_strand>CATCTTTCAATTTTTCTTCGACACAGAGAGCATCGTCGTCTCCGATCAATCCCCCTTTCTTGATCGCTACCTTCAATCTCTC--G--CTCTCTATATATCTATCTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGCTGAAGCTGAGCTGAACTGTATCCTGCTTATATCTTTCGGGAACAATATGCAGCAAGCTGTTCAGTCAAGGTCCGTTGCCAATGGATTTGGCAGTCGGAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGGGTAGAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACTGCTGTAG.....................................................................GTAAAAGGGGATCATATGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAATGGATGGATCTGTGTTTTCAGGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTGTTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCAGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCATCTAAGACTTTGATTATACCGGGTAAAGAGCTTGTACAAGTTTTAGCAAAG.......................................................................................................................................................................GGTGTGCCTGCAACTTTAGATGTCTTCAGAGCTGAATTGCTGCGGGAAAAACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485448" ref_strand="+" ref_description="SGN-E485448 [cSTE-18-C23]">
      <seq>gatcaatccccctttcttgatcgctaccttcaatctctctctctctatatatatctatctattctgtgtacgctgaagctgagctgaactgtatcctgcttatatctttcgggaacaatatgcagcaagctgttcactcaaggtccgttgccaatggatttggcagtcggaaaggcgaaaaagaaatggggacaacgttggagggtagaatgcaatctacaaaaacgacttccagcaagtcgactgctgcaagtaaaaggggatcatacgaaagtccttcacatgatcgactaggttattttaacacatgtcttcttggacatcaagtggaagtacaaacaatggatggatctgagttatcacggatatttcatgcaacgaatgctgacaaaaatattggtattgttctgacactggctcacttgataaaagatggctcccaggagagtaacaatactcctgaatctctggtcaaacctccatctaagactttgattatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74810" stop="72083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74510" g_stop="74446" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429">
            <donor d_prob="0.667" d_score="0.88"/>
            <acceptor a_prob="0.905" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="252" r_length="188" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="399" r_length="147" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72484" g_stop="72383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="501" r_length="102" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E485448" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74510" e_stop="74446"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAT-CCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCAAGTAAGACTTTGATTATAC</genome_strand>
        <mrna_strand>GATCAATCCCCCTTTCTTGATCGCTACCTTCAATCTCTCT--CTCTCTATATATATCTATCTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTACGCTGAAGCTGAGCTGAACTGTATCCTGCTTATATCTTTCGGGAACAATATGCAGCAAGCTGTTCACTCAAGGTCCGTTGCCAATGGATTTGGCAGTCGGAAAGGCGAAAAAGAAATGGGGACAACGTTGGAGGGTAGAATGCAATCTACAAAAACGACTTCCAGCAAGTCGACTGCTGCAA.....................................................................GTAAAAGGGGATCATACGAAAGTCCTTCACATGATCGACTAGGTTATTTTAACACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAATGGATGGATCTGAGTTATCACGGATATTTCATGCAACGAATGCTGACAAAAATATTG................................................................................................................................GTATTGTTCTGACACTGGCTCACTTGATAAAAGATGGCTCCCAGGAGAGTAACAATACTCCTGAATCTCTGGTCAAACCTCCATCTAAGACTTTGATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567725" ref_strand="+" ref_description="SGN-E567725 [11896]">
      <seq>aatttttcttcgacacagagagcatcgtcgtctccgatcaatccccctttcttggatcgctaccttcaatctctcgctctctatatatctatctattctgtgtaggctgaagctgagctgaactgtatcctgcttatatctttcgggaacaatatgcagcaagctgttcagtcaatgtccgttgccaatggatttggcagtcggaaaggcgaaaaagaaatggggacaaggttggagggtagaatgcagtctacaaaaacgacttccagcaagtcgactgctgtnagtaaaaggggatcatatgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaatggatggatctgtgttttcagggatatttcatgcaacaaatgctgacaaagattttggtattgttctgaaactggcccacttgataaaagatggttcccaggagagtaagaatactcctggaatctctggtcaaacctccatctaagactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74843" stop="72088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74543" g_stop="74446" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429">
            <donor d_prob="0.667" d_score="0.80"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="286" r_length="188" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="433" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72484" g_stop="72388" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="531" r_length="98" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E567725" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74543" e_stop="74446"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTCGACACA--GAGCATCGTCGTCTCCGATCAAT-CCCCTTTCTT-GATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCT-GAATCTCTGGTCAAACCTCCAAGTAAGACTTTGAT</genome_strand>
        <mrna_strand>AATTTTTCTTCGACACAGAGAGCATCGTCGTCTCCGATCAATCCCCCTTTCTTGGATCGCTACCTTCAATCTCTC--GCTCTC--TATATATCTATCTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGCTGAAGCTGAGCTGAACTGTATCCTGCTTATATCTTTCGGGAACAATATGCAGCAAGCTGTTCAGTCAATGTCCGTTGCCAATGGATTTGGCAGTCGGAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGGGTAGAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACTGCTGTNA.....................................................................GTAAAAGGGGATCATATGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAATGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTGTTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCAGGAGAGTAAGAATACTCCTGGAATCTCTGGTCAAACCTCCATCTAAGACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314179" ref_strand="+" ref_description="SGN-E314179 [cTOA-21-P1]">
      <seq>agagaactagttgagtttatctttcaatttttcttcgacacagagcatcgtcgtctccgatcaatcccctttcttgatcgccaccttcaatctctctagatatctatatatatttatctatttatctattctgtgtagggtgaagctgagctgaactgtatcttgcttatatctttcggggacaatatgcagcaagctgttcagtcaaggtcctttgccaatggatttggcagtcgcaaaggcgaaaaagaaatggggacaaggttggagagtaaaatgcagtctacaaaaacgacttccagcaagtcgacagctgtaggtaaagggggatcatacgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaacggatggatctgtgttttcagggatatttcatgcaacaaatgctgacaaagattttggtattattctgaaactggcccacttgataaaagatggttcccctggagagtaagaatactcctgaatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74865" stop="72114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74567" g_stop="74446" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73701" i_length="745">
            <donor d_prob="0.667" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73700" g_stop="73693" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="131" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73692" i_stop="73017" i_length="676">
            <donor d_prob="0.609" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="319" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="466" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72484" g_stop="72414" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="538" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E314179" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74567" e_stop="74446"/>
          <exon e_start="73700" e_stop="73693"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTA-TTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTT-CCCTGGAGAGTAAGAATACTCCTGAATCTCTG</genome_strand>
        <mrna_strand>AGAGAACTAGTTGAGTTTATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG.....................................................................GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCCTGGAGAGTAAGAATACTCCTGAATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313115" ref_strand="+" ref_description="SGN-E313115 [cTOA-18-A19]">
      <seq>ttgtgttcatctttcaatttttcttcgacacagagcatcggcgtctccgatcaatcccctttcttgatcgccaccttcaatctctctagatatctatatatatttatctattctgtgtagggtgaagctgagctgaactgtatcttgcttatatctttcggggacaatatgcagcaagctgttcagtcaaggtcctttgccaatggatttggcagtcgcaaaggcgaaaaagaaatggggacaaggttggagagtaaaatgcagtctacaaaaacgacttccagcaagtcgacagctgtaggtaaagggggatcatacgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaacggatggatctgtgttttcagggatatttcatgcaacaaatgctgacaaagattttggtattattctgaaactggcccacttgataaaagatggttccctggagagtaagaatactcctgaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74858" stop="72116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74558" g_stop="74446" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="301" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="448" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72484" g_stop="72416" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="517" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E313115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74558" e_stop="74446"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTC</genome_strand>
        <mrna_strand>TTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGGCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG.....................................................................GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266064" ref_strand="-" ref_description="SGN-E266064 [cLEI-6-O17]">
      <seq>aagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataataggtgtgtagtagggattgagtttgatgttgtaccattaaagcttataattagcagtgtaagtgaaagctgtcgtactacaggtgttcatcctctacattttatttgtccatttcgactttttatttgtccctttttgcttatttttgacaaataaaaaaaagattgatattttttttaccttttaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="76132" stop="48296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75832" g_stop="75363" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75362" i_stop="75231" i_length="132">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75230" g_stop="75224" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="477" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75223" i_stop="74122" i_length="1102">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74121" g_stop="74107" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="492" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E266064" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75832" e_stop="75363"/>
          <exon e_start="75230" e_stop="75224"/>
          <exon e_start="74121" e_stop="74107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTTATATCCTCAATTTATTTAGTGAGTTCATGTTTTTTTAAAAAGTAGAACCTCTTTAGATTTTTATCAATAACAAAATGATAAACTCAATAAAAATTAATAGGACTTTTGTTTCATGATTGATGTTTTGAAAAGAGAAAAAATGTGATGAAAATAGATTTTGAAAGGCTTTGATTCAAGCGGATAAAAAAAAGGACTTTAAACTTATATATGTGCAACTTGTAATACTCACACATTTATTCATACAAGGCAATAGATTAAAATATCTCTATCTTCTTTAATGATATGATTTAATTTTAATAAATTATAAAACAAAGATAGGTTTGTATAATTTAAACATAACAAATATTTTATATGCCTAACTTAACAACTTCATTAGCACACAAAAATTCTAAATTGTTCAAGTTCAAAAAAAAAAAAAAGTATTAATAGTTTGAGTATTTAAATAAATTTTATCAAAAAGATATTAAACATATGAGGGATAAACAATAATTAATTTTGTAATTAATTTATCTATATTTGGTTAAAATAAAATTATAAAATAACTTATCCTAAAATTAGTTAACCCAACTTATAATATTATTTTATCACATATTAAAAATAAAATAATAATACCAAAATAACTTATTCCAAACAATCAACAAGCGTTTAAAACTTTAAACGGTAACAAAATATCTCTTTAGAAGAGATTATGGAGTACGTATTTCGGGTCTTGGGTTGAGTCCGAGCCCATATTATAAAACGGGCCATTTAGTCTCTCTTTGGTCTAAGTTGGGCTATCCGGTACCGGTAGACCCGCAAAAACTATTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCG</genome_strand>
        <mrna_strand>AAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTT....................................................................................................................................AAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745750" ref_strand="+" ref_description="SGN-E745750 [GI|47105120]">
      <seq>gggaagtaaaataaaagataaagagatgtcgttattacgaagaagaaaagcacctgaaaatgaaattcaaccggatgtggagccaaagcttgatgcggaagaagacgataagaagagtaggaagaagaatgtgaagtctggaaagaagaagaaatggtcgtgtatcgataattgctgttggttcgtaggatgcatatgttgtgtgtggtggattttgttgtttttatacaatgctatgccggcgtcgttcccgcagtatgttacggaggcgattacaggcccgttacctgatccaccgggcatcaagttgcagaaggaagggttgaaggctaagcatccggtggtatttattcctggaattgtcacgtgtggacttgaactgtgggaaggacatcagtgtgctgaaggattgtttcggaagcggctttggggcgggacttttggagaagtgtacaaaagaccactatgctgggtgaaccacatgacattagataatgaaactgggatggatcctcctggtattagagttaggccagttagtggacttgttgctgcagattactttgctccaggatactttgtctgggcagttttgattgctaacttggctcgaattggatacgaggagaaaaccatgtatatggctgcatatgattggaggcttgcctttcagaacaccgaggtgcgagaccagaccctaagtcggataaaaagcaatatagaactgatggttgcaaccagtggcaagaaggcagtaattgttccacattccatgggggttgtatactttttgcattttatgaaatgggtggaggcaccagctcctgtgggtggtggtggtggacccgattggtgcgccaagcacattaaagctgtgatgaatattggtgggccattgctaggtgttccaaaatctatagctggccttttctcagctgaagcacgggatattgctgttgccagggctctggctccaggtgttctggacacggatatgttccatcttcaaacattagagcacataatgaagatgtcacgaacctgggatgcaaccatgtcaatgataccaagaggaggggacacgatctggggcggtcttgaatggtcacccgaggaaggctattctccctgcagaagtgagtccagagacgatgctgctcagaattcaggacatcacgagaatcaaactacagattctaaagcaaaatattacagttatggaaggatgatgtcctttggaaaggatgcagcagaagctcatccatcagatcttaagaggattgacttcagggatgctgttaagggcggtaatgttgcaaataacacctgtgatgtgtggaacgagtaccaagacatgggtgttagtggcactaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgccccgaaaatgatggcccgtggcaatgctcacttttcatatgggatagctgatgatttggatgatcctaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcactgtatggagttggcattgaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataataggtgtgtagtagggattgagtttgatgttgtaccattaaagcttataattagcagtgtaagtgaaagctgtcgtactacaggtgttcatcctctacattttatttgtccatttcgactttttatttgtccctttttgcttatttttgacaaataaaaaaaagattgatattttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="82569" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82271" g_stop="81813" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80446" g_stop="80224" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="682" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80104" g_stop="79824" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="963" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79264" g_stop="78937" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1291" r_length="328" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77143" g_stop="76887" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1292" r_stop="1548" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76240" g_stop="75363" g_length="878"/>
          <reference_exon_boundary r_type="cDNA" r_start="1549" r_stop="2426" r_length="878" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75362" i_stop="74958" i_length="405">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74957" g_stop="74943" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="2427" r_stop="2441" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E745750" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82271" e_stop="81813"/>
          <exon e_start="80446" e_stop="80224"/>
          <exon e_start="80104" e_stop="79824"/>
          <exon e_start="79264" e_stop="78937"/>
          <exon e_start="77143" e_stop="76887"/>
          <exon e_start="76240" e_stop="75363"/>
          <exon e_start="74957" e_stop="74943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAGGTAATGCCTCTGTCTGTTACTGTTCTGGGTAATTGGTTTTGCAAAGATTTTGGTTCTTAAATACTGTTTTGATTGCAATAAGCATGATTTATCTTAGTTTCAGCTGGATATTTGCACTGATCTTATCTCTTGAGATAGCTTTTTCAGCTAAATATTGCTGAATAATGAAGCTATTTGACACTGGAAACCTTCTTCTAATTTTATGCTGTTCTATTGCTTGCAATTTCAAGTCTGTCAAAGTTACAACTTACAAACTAATACAGTGTCTTTAAGTTGATTTAATTTAGAATATCTTCCTTCTGGCGTTAGTTCATATAGTAATTATCCATGATGATTAATACAAAGCTCAATATAGGATATACTTCTTGCATCAGTTAATTCTACTAAAGCAATTCTATAGTCATGATAAAAGATCTAGCTTTACAACTTAAATGGTTTAGTAGATGGGATTATAGACCCTTAATCATATTACACTGCTGTTTCCAGATTGACCAAGAAACAAACTAAAGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCATTTTCTTTCACTTCTTAAATTTTATGTATGGTCTTTTGCAGACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAGGTACTGATGTCTCCTATGTGGTGTCGTCTGTGTTTGTATTTGGTCAAATCACGTTAAAAGCTGTTCCAATTAAATCATTTTTAAATGTTATAATTGTGATGCTCAATTTTCCTCAATAGGTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAGGTAAACTTAACTCTCTGAAAATCTTTCTTCTTTGCAGCTTGTTAAAAGGAAGGGTGCAAATTATGTGGATCGAAATCCTTTTATTTGGTTGCTGAAACTAATTTGTGGCCCATGGAGTAACTTCCTTAACATGCCATGAAATTATCCCTTCTTTTATGGCTTTCAAGCTGTGTTCTGAAACCTTTGAGCATCTCCAAAATGTTAACCAGATTCCTGAAAGGTTTCTATGAATATCCTTTCAACCATTGAACTATTAAAAAGTATTGTACAACATTGTTGTTCGTGTCAGCACAATTCATTTTAGAGTACGCAATAAAAGGAAAAACAAACTGTTCTAGTGCCTTAAAAACCCAACAACCAGGCAACACCAAACAAACATATTACTCCATAATGTCTTCGCTCAGTAATCAGCACTCATCTTCTTCATCCTCCTTTGGTTATCATTCAGTCCAGCCCAACATCCTCATAGTCCTTTCTCAGAGCAGCATGGTCTTTAAGTTTGTCTAGTATGTAATGTATTTTTTCTTCTTCTTTCTTTAGTAATTCACCTGAATTTCAGGGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGGGTAATGTTAATCTGAAACCAAATTCTCTCATTGTTTCTCTTGTATACGCTACTTTCCTTTATGTGTTTCAACTTTGAGCATTGATTTTGTTAGTGGTGGGTGTAGGTGATTTCGGATTACCAGTTTAGGGACTTCTATGATCAGCAGACATGCTGTAGTCCAAGGGATTTAGTGAATAAACTGTGTTCATCTCAACCCAGTAGCTTTACCTTGGACCATGTATATGTGTTCAGAAATCATCCAGATAATAGATATCAGACCCAGTTAATATGGGATGTGACAGAATTCCAAATCTGAATCCATATAACTCAAATGTGCCTAAAGTAGCACAAATAAAACTATCTATAAAGTGGTTAGTACTCTAATGTGAAGTTCTTGTTCTGATTATGGTTCTTTTACTTATACTTTTATGCAATAGGCAAGCATGGGTATGACCTGTTGCCTCGCTAAAAACTGCTTCTTTTGGGGAATTGCCAAAGAATGATTTGGATACCTGGCTGGTCATAATAAAACCAGTGGGCTCACATGTCATGAGTTACACGATTCAGAGCCAATGTGTTGTGCTTGGTGTGATGTCAGTGTAAAATAATGGAAATAAATGAAGTCTAATCTTTATATTACAACTGGATGATGTCCTTGTATATCAATTGTTTTTGTACACATTCTTTGCAAGACATTCCCTTTTTTGTGATAATATTAGATGAGGACTTATCCACTAACAAAAGAAAGAAATAAGATAAAGTACTGCATGAGGCATTCCTTTAACACTTGCTATCTCAACGAAATATCTGTTCAGAATTTCCTTTAAAGGAAAATCTGCTGTCAATGTAAATGGGACGAGATGGTTACAATTAAGTTCATATTGGACTTCCTCTTGAAAAGTGTTCCTTTACTTGCATATAATATTCCAAACTTGTCACTTGTCTTCTTCTTTTTTCTTGAACGAGGAACTCCATTCATTTTGTCAGTTCATCTGAATTTATTATGCTCCAAAAAGACCACAAGAGTCAAAAATATTTCCACTGAGTAGAAGCAGAACTAGACAAGCAAAGCATCATAACTGCCAGGAAAAGCAATGAAAAATGGAACCATGTTCTCTCAAATATTTCAAATTTGAAGACCATATTGGTTATGCTATAAGGTGCTTCTTATAGAGCAAAGAAATATCTATTTCCTTCTCTTCTTGTAATTATTACTCATATTTAAGATCCCTACATCAGCAGCAGCACATGTTTAGTGTGCATCAATCAAGTAATCTGAAGAAGATCTGAAGAACCATTCTCATATGCATCTTTTGGACTTATGGATGGAAAGAAATAAGGCTTGCTTTGAAGGAAGAAAGATGCATGTTTCTAGAATTAAGAACTCTTGTTTGCTTAGTTGATATTTCTGGTGTTATATGAGTAGAGTAGACAGCCTGGATCAGTGCATGGATGTCCTTAGCTTGCTAGAAGGGATTACTCGATGTGGTGATGTTTTCTCATGCAGTTGGTTTTTGTACTTCCCTGTACCATCTTGTACTTTTTTAAAATAAAATTGACCTCATCAAGAAAATAAAAAGTTACCAGGAGATTTAACTAAATAACATTAAAGATGGGTGATCTGTGATGTCTCAGTGGCCTTCCATGATATGGGTGCCTTTTCTTCCTATTTATGCAAATATTGTCTGAAGAAGTTGTCTTAACTTCCTTATCAGATTTTTTTTTGTGCTCACAGGCTGTAATTTCCAAAATAAATTGTCTTATCCATTGCTTCCTGATGCCTCTAACTAACTAGCATTTATTTACATGCAGGATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTTATATCCTCAATTTATTTAGTGAGTTCATGTTTTTTTAAAAAGTAGAACCTCTTTAGATTTTTATCAATAACAAAATGATAAACTCAATAAAAATTAATAGGACTTTTGTTTCATGATTGATGTTTTGAAAAGAGAAAAAATGTGATGAAAATAGATTTTGAAAGGCTTTGATTCAAGCGGATAAAAAAAAGGACTTTAAACTTATATATGTGCAACTTGTAATACTCACACATTTATTCATACAAGGCAATAGATTAAAATATCTCTATCTTCTTTAATGATATGATTTAATTTTAATAAATTATAAAACAAAGATAGGTTTGTATAATTTAAACATAACAAATATTTTATATGCCTAACTTAACAACTTCATTAGCACACAAAAATTCTAAATTGTTCAAGTTCAAAAAAAAAAAAAAG</genome_strand>
        <mrna_strand>GGGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG.......................................................................................................................GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAATGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCCTGCAGAAGTGAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAAGGGCGGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGCAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349222" ref_strand="+" ref_description="SGN-E349222 [cTOS-2-B3]">
      <seq>aacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataataggtgtgtagtagggattgagtttgatgttgtaccattaaagcttataattagcagtgtaagtgaaagctgtcgtactacaggtgttcatcctctacattttatttgtccatttcgactttttatttgtccctttttgcttatttttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="75995" stop="75097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75695" g_stop="75397" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E349222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75695" e_stop="75397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACA</genome_strand>
        <mrna_strand>AACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349374" ref_strand="+" ref_description="SGN-E349374 [cTOS-1-M22]">
      <seq>gaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataataggtgtgtagtagggattgagtttgatgttgtaccattaaagcttataattagcagtgtaagtgaaagctgtcgtactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="76488" stop="75167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76188" g_stop="75466" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E349374" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76188" e_stop="75466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAG</genome_strand>
        <mrna_strand>GAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351812" ref_strand="+" ref_description="SGN-E351812 [cTOS-8-G19]">
      <seq>gaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataatangtgtgtagtaggnattgagtttgatgttgtacattaaagcttatattagcagtgtaagtgaaagctgtcgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="76488" stop="75171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76188" g_stop="75471" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E351812" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76188" e_stop="75471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTAC</genome_strand>
        <mrna_strand>GAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATANGTGTGTAGTAGGNATTGAGTTTGATGTTGTA-CATTAAAGCTTAT-ATTAGCAGTGTAAGTGAAAGCTGTCGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737312" ref_strand="+" ref_description="SGN-E737312 [LC09BA08]">
      <seq>ctgtgatgtgtggaacgagtaccaagacatgggtgttagtggcactaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgccccgaaaatgatggcccgtggtaatgctcacttttcatatgggatagctgatgatttggatgatcctaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcactgtatggagttggcattgaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttcccctggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="77408" stop="75316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77108" g_stop="76887" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76240" g_stop="75616" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="847" r_length="625" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E737312" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77108" e_stop="76887"/>
          <exon e_start="76240" e_stop="75616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTT</genome_strand>
        <mrna_strand>CTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCCCTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699582" ref_strand="+" ref_description="SGN-E699582 [FA10CD04]">
      <seq>gctctaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgccccgaaaatgatggcccgtggtaatgctcacttttcatatgggatagctgatgatttggatgatcctaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcactgtatggagttggcattgaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttccctttgatacaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcacatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccaccttgacatgttatttatgaacttacttaccctttcccctggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="77367" stop="75368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77067" g_stop="76887" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76240" g_stop="75668" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="754" r_length="573" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E699582" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77067" e_stop="76887"/>
          <exon e_start="76240" e_stop="75668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCC</genome_strand>
        <mrna_strand>GCTCTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCCCTTTGATACAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCACATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCACCTTGACATGTTATTTATGAACTTACTTACCCTTTCCCCTGGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306648" ref_strand="+" ref_description="SGN-E306648 [cLEY-19-J13]">
      <seq>tgaaactgaaagagcatatgtttactaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="76489" stop="75439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76189" g_stop="75739" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E306648" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76189" e_stop="75739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTGAAAGAGCATATGTTTAC-AAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCAC</genome_strand>
        <mrna_strand>TGAAACTGAAAGAGCATATGTTTACTAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400666" ref_strand="+" ref_description="SGN-E400666 [PPC-1-D6]">
      <seq>tccttgcaaaagtaagtccagagacgatgctgctcagaattcaggacatcacgagaatcaaactacagattctaaagcaaaatattacagttatggaaggatgatgtcctttggaaaggatgcagcagaggctcatccatcagatcttaagaggattgactttagggatgctgttaagggcactaatgttgcaaataacacctgtgatgtgtggaacgagtaccaagacatgggtgttagtggtactaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgctccgaaaatgatggcccgtggtaatgctcatttttcatatgggatagctgatgatttggatgatccaaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcaatgtatggagttggcattgaaactgaaagagnctatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgatggtgatgaaagtagctgcttgaaatctggtggttacacgatagatggtgatgagactgtgcctgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="79402" stop="75736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79102" g_stop="78937" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77143" g_stop="76887" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="423" r_length="257" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76240" g_stop="76036" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="628" r_length="205" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E400666" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79102" e_stop="78937"/>
          <exon e_start="77143" e_stop="76887"/>
          <exon e_start="76240" e_stop="76036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGGGTAATGTTAATCTGAAACCAAATTCTCTCATTGTTTCTCTTGTATACGCTACTTTCCTTTATGTGTTTCAACTTTGAGCATTGATTTTGTTAGTGGTGGGTGTAGGTGATTTCGGATTACCAGTTTAGGGACTTCTATGATCAGCAGACATGCTGTAGTCCAAGGGATTTAGTGAATAAACTGTGTTCATCTCAACCCAGTAGCTTTACCTTGGACCATGTATATGTGTTCAGAAATCATCCAGATAATAGATATCAGACCCAGTTAATATGGGATGTGACAGAATTCCAAATCTGAATCCATATAACTCAAATGTGCCTAAAGTAGCACAAATAAAACTATCTATAAAGTGGTTAGTACTCTAATGTGAAGTTCTTGTTCTGATTATGGTTCTTTTACTTATACTTTTATGCAATAGGCAAGCATGGGTATGACCTGTTGCCTCGCTAAAAACTGCTTCTTTTGGGGAATTGCCAAAGAATGATTTGGATACCTGGCTGGTCATAATAAAACCAGTGGGCTCACATGTCATGAGTTACACGATTCAGAGCCAATGTGTTGTGCTTGGTGTGATGTCAGTGTAAAATAATGGAAATAAATGAAGTCTAATCTTTATATTACAACTGGATGATGTCCTTGTATATCAATTGTTTTTGTACACATTCTTTGCAAGACATTCCCTTTTTTGTGATAATATTAGATGAGGACTTATCCACTAACAAAAGAAAGAAATAAGATAAAGTACTGCATGAGGCATTCCTTTAACACTTGCTATCTCAACGAAATATCTGTTCAGAATTTCCTTTAAAGGAAAATCTGCTGTCAATGTAAATGGGACGAGATGGTTACAATTAAGTTCATATTGGACTTCCTCTTGAAAAGTGTTCCTTTACTTGCATATAATATTCCAAACTTGTCACTTGTCTTCTTCTTTTTTCTTGAACGAGGAACTCCATTCATTTTGTCAGTTCATCTGAATTTATTATGCTCCAAAAAGACCACAAGAGTCAAAAATATTTCCACTGAGTAGAAGCAGAACTAGACAAGCAAAGCATCATAACTGCCAGGAAAAGCAATGAAAAATGGAACCATGTTCTCTCAAATATTTCAAATTTGAAGACCATATTGGTTATGCTATAAGGTGCTTCTTATAGAGCAAAGAAATATCTATTTCCTTCTCTTCTTGTAATTATTACTCATATTTAAGATCCCTACATCAGCAGCAGCACATGTTTAGTGTGCATCAATCAAGTAATCTGAAGAAGATCTGAAGAACCATTCTCATATGCATCTTTTGGACTTATGGATGGAAAGAAATAAGGCTTGCTTTGAAGGAAGAAAGATGCATGTTTCTAGAATTAAGAACTCTTGTTTGCTTAGTTGATATTTCTGGTGTTATATGAGTAGAGTAGACAGCCTGGATCAGTGCATGGATGTCCTTAGCTTGCTAGAAGGGATTACTCGATGTGGTGATGTTTTCTCATGCAGTTGGTTTTTGTACTTCCCTGTACCATCTTGTACTTTTTTAAAATAAAATTGACCTCATCAAGAAAATAAAAAGTTACCAGGAGATTTAACTAAATAACATTAAAGATGGGTGATCTGTGATGTCTCAGTGGCCTTCCATGATATGGGTGCCTTTTCTTCCTATTTATGCAAATATTGTCTGAAGAAGTTGTCTTAACTTCCTTATCAGATTTTTTTTTGTGCTCACAGGCTGTAATTTCCAAAATAAATTGTCTTATCCATTGCTTCCTGATGCCTCTAACTAACTAGCATTTATTTACATGCAGGATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTA</genome_strand>
        <mrna_strand>TCCTTGCAAAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAGGCTCATCCATCAGATCTTAAGAGGATTGACTTTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAAGGGCACTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGTACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCTCCGAAAATGATGGCCCGTGGTAATGCTCATTTTTCATATGGGATAGCTGATGATTTGGATGATCCAAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCAATGTATGGAGTTGGCATTGAAACTGAAAGAGNCTATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATGGTGATGAAAGTAGCTGCTTGAAATCTGGTGGTTACACGATAGATGGTGATGAGACTGTGCCTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401500" ref_strand="+" ref_description="SGN-E401500 [PPC-4-K4]">
      <seq>cgagaatcaaactacagattctaaagcaaaatattacagttatggaaggatgatgtcctttggaaaagatgcaacagaggctcatccatcagatcttaagaggattgactttagggatgctgttaagggcagtaatgttgcaaataacacctgtgatgtgtggaacgagtaccaagacatgggtgttagtggtactaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgctccgaaaatgatggcccgtggtaatgctcatttttcatatgggatagctgatgatttggatgatcctaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcaatgtatggagttggcattgaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgatggtgatgaaagtacctgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="79351" stop="75783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79051" g_stop="78937" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77143" g_stop="76887" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="372" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76240" g_stop="76083" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="530" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E401500" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79051" e_stop="78937"/>
          <exon e_start="77143" e_stop="76887"/>
          <exon e_start="76240" e_stop="76083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGGGTAATGTTAATCTGAAACCAAATTCTCTCATTGTTTCTCTTGTATACGCTACTTTCCTTTATGTGTTTCAACTTTGAGCATTGATTTTGTTAGTGGTGGGTGTAGGTGATTTCGGATTACCAGTTTAGGGACTTCTATGATCAGCAGACATGCTGTAGTCCAAGGGATTTAGTGAATAAACTGTGTTCATCTCAACCCAGTAGCTTTACCTTGGACCATGTATATGTGTTCAGAAATCATCCAGATAATAGATATCAGACCCAGTTAATATGGGATGTGACAGAATTCCAAATCTGAATCCATATAACTCAAATGTGCCTAAAGTAGCACAAATAAAACTATCTATAAAGTGGTTAGTACTCTAATGTGAAGTTCTTGTTCTGATTATGGTTCTTTTACTTATACTTTTATGCAATAGGCAAGCATGGGTATGACCTGTTGCCTCGCTAAAAACTGCTTCTTTTGGGGAATTGCCAAAGAATGATTTGGATACCTGGCTGGTCATAATAAAACCAGTGGGCTCACATGTCATGAGTTACACGATTCAGAGCCAATGTGTTGTGCTTGGTGTGATGTCAGTGTAAAATAATGGAAATAAATGAAGTCTAATCTTTATATTACAACTGGATGATGTCCTTGTATATCAATTGTTTTTGTACACATTCTTTGCAAGACATTCCCTTTTTTGTGATAATATTAGATGAGGACTTATCCACTAACAAAAGAAAGAAATAAGATAAAGTACTGCATGAGGCATTCCTTTAACACTTGCTATCTCAACGAAATATCTGTTCAGAATTTCCTTTAAAGGAAAATCTGCTGTCAATGTAAATGGGACGAGATGGTTACAATTAAGTTCATATTGGACTTCCTCTTGAAAAGTGTTCCTTTACTTGCATATAATATTCCAAACTTGTCACTTGTCTTCTTCTTTTTTCTTGAACGAGGAACTCCATTCATTTTGTCAGTTCATCTGAATTTATTATGCTCCAAAAAGACCACAAGAGTCAAAAATATTTCCACTGAGTAGAAGCAGAACTAGACAAGCAAAGCATCATAACTGCCAGGAAAAGCAATGAAAAATGGAACCATGTTCTCTCAAATATTTCAAATTTGAAGACCATATTGGTTATGCTATAAGGTGCTTCTTATAGAGCAAAGAAATATCTATTTCCTTCTCTTCTTGTAATTATTACTCATATTTAAGATCCCTACATCAGCAGCAGCACATGTTTAGTGTGCATCAATCAAGTAATCTGAAGAAGATCTGAAGAACCATTCTCATATGCATCTTTTGGACTTATGGATGGAAAGAAATAAGGCTTGCTTTGAAGGAAGAAAGATGCATGTTTCTAGAATTAAGAACTCTTGTTTGCTTAGTTGATATTTCTGGTGTTATATGAGTAGAGTAGACAGCCTGGATCAGTGCATGGATGTCCTTAGCTTGCTAGAAGGGATTACTCGATGTGGTGATGTTTTCTCATGCAGTTGGTTTTTGTACTTCCCTGTACCATCTTGTACTTTTTTAAAATAAAATTGACCTCATCAAGAAAATAAAAAGTTACCAGGAGATTTAACTAAATAACATTAAAGATGGGTGATCTGTGATGTCTCAGTGGCCTTCCATGATATGGGTGCCTTTTCTTCCTATTTATGCAAATATTGTCTGAAGAAGTTGTCTTAACTTCCTTATCAGATTTTTTTTTGTGCTCACAGGCTGTAATTTCCAAAATAAATTGTCTTATCCATTGCTTCCTGATGCCTCTAACTAACTAGCATTTATTTACATGCAGGATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGA</genome_strand>
        <mrna_strand>CGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAAGATGCAACAGAGGCTCATCCATCAGATCTTAAGAGGATTGACTTTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGTACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCTCCGAAAATGATGGCCCGTGGTAATGCTCATTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCAATGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATGGTGATGAAAGTACCTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265427" ref_strand="+" ref_description="SGN-E265427 [cLEI-9-B19]">
      <seq>cgagactagttctcattttatgaagtgggtggaggcaccagctcctgtgggtggtggtggtggacccgattggtgcgccaagcacattaaagctgtgatgaatattggtgggccattgctaggtgttccaaaatctatagctggccttttctcagctgaagcacgggatattgctgttgccagggctctggctccaggtgttctggacacggatatgttccatcttcaaacattagagcacataatgaagatgtcacgaacctgggatgcaaccatgtcaatgataccaagaggaggggacacgatctggggcggtcttgaatggtcacccgaagaaggctattctccttgcagaagtaagtccagagacgatgctgctcagaattcaagacatcacgagaatcaaactacagattctaaagcaaaatattacagttatggaaggatgatgtcctttggaaaggatgcagcagaagctcatccatcagatcttaagaagattgacttcanggatgctgttaaaggcagtaatgttgcaaataacacctgtgatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="80298" stop="76798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80005" g_stop="79824" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79264" g_stop="78937" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="511" r_length="328" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77143" g_stop="77098" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="557" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E265427" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80005" e_stop="79824"/>
          <exon e_start="79264" e_stop="78937"/>
          <exon e_start="77143" e_stop="77098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATACT-TTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAGGTAAACTTAACTCTCTGAAAATCTTTCTTCTTTGCAGCTTGTTAAAAGGAAGGGTGCAAATTATGTGGATCGAAATCCTTTTATTTGGTTGCTGAAACTAATTTGTGGCCCATGGAGTAACTTCCTTAACATGCCATGAAATTATCCCTTCTTTTATGGCTTTCAAGCTGTGTTCTGAAACCTTTGAGCATCTCCAAAATGTTAACCAGATTCCTGAAAGGTTTCTATGAATATCCTTTCAACCATTGAACTATTAAAAAGTATTGTACAACATTGTTGTTCGTGTCAGCACAATTCATTTTAGAGTACGCAATAAAAGGAAAAACAAACTGTTCTAGTGCCTTAAAAACCCAACAACCAGGCAACACCAAACAAACATATTACTCCATAATGTCTTCGCTCAGTAATCAGCACTCATCTTCTTCATCCTCCTTTGGTTATCATTCAGTCCAGCCCAACATCCTCATAGTCCTTTCTCAGAGCAGCATGGTCTTTAAGTTTGTCTAGTATGTAATGTATTTTTTCTTCTTCTTTCTTTAGTAATTCACCTGAATTTCAGGGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGGGTAATGTTAATCTGAAACCAAATTCTCTCATTGTTTCTCTTGTATACGCTACTTTCCTTTATGTGTTTCAACTTTGAGCATTGATTTTGTTAGTGGTGGGTGTAGGTGATTTCGGATTACCAGTTTAGGGACTTCTATGATCAGCAGACATGCTGTAGTCCAAGGGATTTAGTGAATAAACTGTGTTCATCTCAACCCAGTAGCTTTACCTTGGACCATGTATATGTGTTCAGAAATCATCCAGATAATAGATATCAGACCCAGTTAATATGGGATGTGACAGAATTCCAAATCTGAATCCATATAACTCAAATGTGCCTAAAGTAGCACAAATAAAACTATCTATAAAGTGGTTAGTACTCTAATGTGAAGTTCTTGTTCTGATTATGGTTCTTTTACTTATACTTTTATGCAATAGGCAAGCATGGGTATGACCTGTTGCCTCGCTAAAAACTGCTTCTTTTGGGGAATTGCCAAAGAATGATTTGGATACCTGGCTGGTCATAATAAAACCAGTGGGCTCACATGTCATGAGTTACACGATTCAGAGCCAATGTGTTGTGCTTGGTGTGATGTCAGTGTAAAATAATGGAAATAAATGAAGTCTAATCTTTATATTACAACTGGATGATGTCCTTGTATATCAATTGTTTTTGTACACATTCTTTGCAAGACATTCCCTTTTTTGTGATAATATTAGATGAGGACTTATCCACTAACAAAAGAAAGAAATAAGATAAAGTACTGCATGAGGCATTCCTTTAACACTTGCTATCTCAACGAAATATCTGTTCAGAATTTCCTTTAAAGGAAAATCTGCTGTCAATGTAAATGGGACGAGATGGTTACAATTAAGTTCATATTGGACTTCCTCTTGAAAAGTGTTCCTTTACTTGCATATAATATTCCAAACTTGTCACTTGTCTTCTTCTTTTTTCTTGAACGAGGAACTCCATTCATTTTGTCAGTTCATCTGAATTTATTATGCTCCAAAAAGACCACAAGAGTCAAAAATATTTCCACTGAGTAGAAGCAGAACTAGACAAGCAAAGCATCATAACTGCCAGGAAAAGCAATGAAAAATGGAACCATGTTCTCTCAAATATTTCAAATTTGAAGACCATATTGGTTATGCTATAAGGTGCTTCTTATAGAGCAAAGAAATATCTATTTCCTTCTCTTCTTGTAATTATTACTCATATTTAAGATCCCTACATCAGCAGCAGCACATGTTTAGTGTGCATCAATCAAGTAATCTGAAGAAGATCTGAAGAACCATTCTCATATGCATCTTTTGGACTTATGGATGGAAAGAAATAAGGCTTGCTTTGAAGGAAGAAAGATGCATGTTTCTAGAATTAAGAACTCTTGTTTGCTTAGTTGATATTTCTGGTGTTATATGAGTAGAGTAGACAGCCTGGATCAGTGCATGGATGTCCTTAGCTTGCTAGAAGGGATTACTCGATGTGGTGATGTTTTCTCATGCAGTTGGTTTTTGTACTTCCCTGTACCATCTTGTACTTTTTTAAAATAAAATTGACCTCATCAAGAAAATAAAAAGTTACCAGGAGATTTAACTAAATAACATTAAAGATGGGTGATCTGTGATGTCTCAGTGGCCTTCCATGATATGGGTGCCTTTTCTTCCTATTTATGCAAATATTGTCTGAAGAAGTTGTCTTAACTTCCTTATCAGATTTTTTTTTGTGCTCACAGGCTGTAATTTCCAAAATAAATTGTCTTATCCATTGCTTCCTGATGCCTCTAACTAACTAGCATTTATTTACATGCAGGATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGT</genome_strand>
        <mrna_strand>CGAGACTAGTTCTCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAAGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAAGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAAGATTGACTTCANG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAAAGGCAGTAATGTTGCAAATAACACCTGTGATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706804" ref_strand="+" ref_description="SGN-E706804 [FA30DH11]">
      <seq>gacatcagtgtgctgaaggattgtttcggaagcggctttggggcgggacttttggagaagtgtacaaaagaccactatgctgggtgaaccacatgacattagataatgaaactgggatggatcctcctggtattagagttaggccagttagtggacttgttgctgcagattactttgctccaggatactttgtctgggcagttttgattgctaacttggctcgaattggatacgaggagaaaaccatgtatatggctgcatatgattggaggcttgcctttcagaacaccgaggtgcgagaccagaccctaagtcggataaaaagcaatatagaactgatggttgcaaccagtggcaagaaggcagtaattgttccacattccatgggggttgtatactttttgcattttatgaagtgggtggaggcaccagctcctgtgggtggtggtggtggacccgattggtgcgccaagcacattaaagctgtgatgaatattggtgggccattgctaggtgttccaaaatctatagctggccttttctcagctgaagcacgggatattgctgttgccagggctctggctccaggtgttctggacacggatatgttccatcttcaaacattagagcacataatgaagatgtcacgaacctgggatgcaaccatgtcaatgatacccagaggagggggacacgatctggggcggtcttgaatggtcacccgaggaaggctattctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="82182" stop="78800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81882" g_stop="81813" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80446" g_stop="80224" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="293" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80104" g_stop="79824" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="574" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79264" g_stop="79100" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="740" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E706804" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81882" e_stop="81813"/>
          <exon e_start="80446" e_stop="80224"/>
          <exon e_start="80104" e_stop="79824"/>
          <exon e_start="79264" e_stop="79100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAGGTAATGCCTCTGTCTGTTACTGTTCTGGGTAATTGGTTTTGCAAAGATTTTGGTTCTTAAATACTGTTTTGATTGCAATAAGCATGATTTATCTTAGTTTCAGCTGGATATTTGCACTGATCTTATCTCTTGAGATAGCTTTTTCAGCTAAATATTGCTGAATAATGAAGCTATTTGACACTGGAAACCTTCTTCTAATTTTATGCTGTTCTATTGCTTGCAATTTCAAGTCTGTCAAAGTTACAACTTACAAACTAATACAGTGTCTTTAAGTTGATTTAATTTAGAATATCTTCCTTCTGGCGTTAGTTCATATAGTAATTATCCATGATGATTAATACAAAGCTCAATATAGGATATACTTCTTGCATCAGTTAATTCTACTAAAGCAATTCTATAGTCATGATAAAAGATCTAGCTTTACAACTTAAATGGTTTAGTAGATGGGATTATAGACCCTTAATCATATTACACTGCTGTTTCCAGATTGACCAAGAAACAAACTAAAGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCATTTTCTTTCACTTCTTAAATTTTATGTATGGTCTTTTGCAGACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAGGTACTGATGTCTCCTATGTGGTGTCGTCTGTGTTTGTATTTGGTCAAATCACGTTAAAAGCTGTTCCAATTAAATCATTTTTAAATGTTATAATTGTGATGCTCAATTTTCCTCAATAGGTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAGGTAAACTTAACTCTCTGAAAATCTTTCTTCTTTGCAGCTTGTTAAAAGGAAGGGTGCAAATTATGTGGATCGAAATCCTTTTATTTGGTTGCTGAAACTAATTTGTGGCCCATGGAGTAACTTCCTTAACATGCCATGAAATTATCCCTTCTTTTATGGCTTTCAAGCTGTGTTCTGAAACCTTTGAGCATCTCCAAAATGTTAACCAGATTCCTGAAAGGTTTCTATGAATATCCTTTCAACCATTGAACTATTAAAAAGTATTGTACAACATTGTTGTTCGTGTCAGCACAATTCATTTTAGAGTACGCAATAAAAGGAAAAACAAACTGTTCTAGTGCCTTAAAAACCCAACAACCAGGCAACACCAAACAAACATATTACTCCATAATGTCTTCGCTCAGTAATCAGCACTCATCTTCTTCATCCTCCTTTGGTTATCATTCAGTCCAGCCCAACATCCTCATAGTCCTTTCTCAGAGCAGCATGGTCTTTAAGTTTGTCTAGTATGTAATGTATTTTTTCTTCTTCTTTCTTTAGTAATTCACCTGAATTTCAGGGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGA-GGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCC</genome_strand>
        <mrna_strand>GACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG.......................................................................................................................GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCCAGAGGAGGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578260" ref_strand="+" ref_description="SGN-E578260 [LE12BE05]">
      <seq>agattcaatttccttagcggaaactagcttctaattagcctcaattttttccgaacgtaatggacggttatactcaagaacaattacttagatattctacctgtctcaattcgcaagcggacaatccgttttaatctgttttggtttacatgatcctttgcttaattgaaaaagtttctcatacgaactattgctccactatattgtgaattttgagcatcatatgacacatctgtcaaaaagaggaaatgaagaacatcaggttactccttttcaacaaagaagcccactaatttccattttttcccctcatatacattctagtcaaacaaggccacaaaatgaggcagagcaagtgcaatgaataaatttcacctctgggagggatatactgctgaaattgttgtaaacaatcatctgtctttgggatagaacaactgtggcattgaatacactgaaattgttcggtcaaagaaactactagtaatatctagctataaggtttgaaaaatattaatagggaatccaccataattaattttgcccattgaattttgcccttcaggaactgtaagcctcacggctcacagtgtaatacatctttcagttaggcagtgcgactttctgatttagtaagagacttctgtttaggaatgaaaggatctcatatttactttctttcttggattttttcacttcaaagtcatggttcttaacctaaaaacttttcctttaaaaaacaaaaacaaatagaaacatcttacctctagctcacccgtaagactaaatctctgtcgtcatgctagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="81605" stop="80187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81305" g_stop="80487" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E578260" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81305" e_stop="80487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCAT</genome_strand>
        <mrna_strand>AGATT-CAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTAATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCAATGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGGATTTTTT-CACTTCAAAGTCATGGTTCTTAACCTAAAAACTTTTCCTTTAAAAAAC-AAAAAC--AAATAG-AAACATCTT-ACCTCTAGCTCA-CCCGTAAG-ACTAAATCTCTGTCGTCA-TGCTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289967" ref_strand="+" ref_description="SGN-E289967 [cLET-9-D12]">
      <seq>ttcagccgttgccggcggcggcttccggtggtctctgttcttatagaatataggaagctctctccgtatgttatgttaattgaagtaaaataaaagataaagagatgtcgttattacgaagaagaaaagcacctgaaaatgaaattcaaccggatgtggagccaaagcttgatgcggaagaagacgataagaagagtaggaagaagaatgtgaagtctggaaagaagaagaaatggtcgtgtatcgataattgctgttggttcgtaggatgcatatgttgtgtgtggtggattttgttgtttttatacaatgctatgccggcgtcgttcccgcagtatgttacggaggcgattacaggcccgttacctgatccaccgggcatcaagttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="82650" stop="81660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82350" g_stop="81960" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E289967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82350" e_stop="81960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCA</genome_strand>
        <mrna_strand>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344357" ref_strand="+" ref_description="SGN-E344357 [cTOF-16-D22]">
      <seq>tcttcttcaggcgtgtcatccaaattacagtctctaattatgctctgttttctctctccctaaaaccatcatcagttatccataactctttgtctccattgtctcttcttcacattcctattattattattactattgtgtgtatgtgtatgatgatcaattcctcattgacatcactattatgccgcagcttttgactcatctataacagacaataaagagattccttcaatcatttttcaccccactccttcacttcccctgtttttcttcctgttgctctgtttttttttcttcttctataaaaatactcagatatggataggtatagttatcaacgggagagggaaatttctcattcttcaaacccatctttctcttctacacttcttgacgcaatttaccgttcaattgatcaaggagaagaagaagaagagattgttctttacaaagaaacaatgcgtaagaaacagagcaacaatatggagagttttcaaaaagcttgtatgattgagaaatggatggaacataaagcaagtgaaaaagttgttgttcgaagaaaatctatagctgatttcgaaaggaatctgatgaactcgagctcgagttcttcagattcgagctgtgggggtgtgttttcttcttcagaaactgaatccagttacaataatgtagttataaattctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="91543" stop="92833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91843" g_stop="92533" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E344357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91843" e_stop="92533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGG</genome_strand>
        <mrna_strand>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315071" ref_strand="+" ref_description="SGN-E315071 [cTOB-4-K10]">
      <seq>ttgtctccattgtctcttcttcacattcttattattattattactattgtgtgtatgtgtatgatgatcaattcctcattgacatcactattatgccgcagcttttgactcatctataacagacaataaagagattccttcaatcatttttcaccccactccttcacttcccctgtttttcttcctgttgctctgcttttttttcttcttctataaaaatactcagatatggataggtatagttatcaacgggagagggaaatttctcattcttcaaacccatctttctcttctacacttcttgacgcaatttaccgttcaattgatcaaggagaagaagaagaagagattgttctttacaaagaaacaatgcgtgagaaacagagcaacaatatggagagttttcaaaaagcttgtctgattgagaaatggatggaacataaagcaagtgaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="91632" stop="92688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91932" g_stop="92388" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E315071" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91932" e_stop="92388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAG</genome_strand>
        <mrna_strand>TTGTCTCCATTGTCTCTTCTTCACATTCTTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGCTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTGAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTCTGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338457" ref_strand="+" ref_description="SGN-E338457 [cTOE-15-O10]">
      <seq>tcattcttcaaacccatctttctcttctacacttcttgacgcaatttaccgttcaattgatcaaggagaagaagaagaagagattgttctttacaaagaaacaatgcgtaagaaacagagcaacaatatggagagttttcaaaaagcttgtatgattgagaaatggatggaacataaagcaagtgaaaaagttgttgttcgaagaaaatctatagctgatttcgaaaggaatctgatgaactcgagctcgagttcttcagattcgagctgtgggggtgtgttttcttcttcagaaactgaatccagttacaataatgtagttataaattctgctgggtcatcttcttcttgttatggtctaaacaggcctaaaccaatcagaacctcaatttccggttcaaaccctgaaaaacacagcaaaaatcaagctaaacagctcaacaactatggcgatttccgccataatcatcctcctatggaaagagatttcgctcccaaaaccaaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="91898" stop="93006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92198" g_stop="92706" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E338457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92198" e_stop="92706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</genome_strand>
        <mrna_strand>TCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311581" ref_strand="+" ref_description="SGN-E311581 [cTOA-6-M11]">
      <seq>aagagattgttctttacaaagaaacaatgcgtaagaaacagagcaacaatatggagagttttcaaaaagcttgtatgattgagaaatggatggaacataaagcaagtgaaaaagttgttgttcgaagaaaatctatagctgatttcgaaaggaatctgatgaactcgagctcgagttcttcagattcgagctgtgggggtgtgttttcttcttcagaaactgaatccagttacaataatgtagttataaattctgctgggtcatcttcttcttgttatggtctaaacaggcctaaaccaatcagaacctcaatttccggttcaaaccctgaaaaacacagcaaaaatcaagctaaacagctcaacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="91975" stop="92944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92275" g_stop="92644" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E311581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92275" e_stop="92644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTA</genome_strand>
        <mrna_strand>AAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553333" ref_strand="+" ref_description="SGN-E553333 [cTSB-4-N24]">
      <seq>gtttcttgaactcactattcactgctggaaatacaaagaaacccaaagttgtttcttcgaattctgcaaatgcatcttctacatgttcttcagcttcttcattctccaggtcatgtttaagcaaaagcacacccaaatccagcagcaacggaaccaaacgttccgttagattttacccagtgagtatcatcgtaaacgaagattgtcagccatgtggacataaaaatctgtacgaagaaaaaatacccaaaccagagtctctaaagaataatatcagaaacaccgttaacgaagagctcaaatttcattcaatggagaaaaatcgtcgagtagaagaagctactaaggagttgctgagaaattatcagagaaattcaaattcccaaatcaagaaaatggaaattttcgacgatgaagatgatgacgacgatgatggtgcaagttgtgctagttcagatttattcgaacttgataatctttctgcaattggaatagatagtaataggtatctcgaagaattacccgtttacgaaactactcatctcgatactaatcgagccattgctagtggtttgattttgtaataaaagtgtattatttattgttaactaatgtaatttttgtaattggtttgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="92503" stop="93737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92803" g_stop="93436" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="661"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E553333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92803" e_stop="93436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</genome_strand>
        <mrna_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAAACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552420" ref_strand="+" ref_description="SGN-E552420 [cTSB-3-N24]">
      <seq>gtttcttgaactcactattcactgctggaaatacaaagaaacccaaagttgtttcttcgaattctgcaaatgcatcttctacatgttcttcagcttcttcattctccaggtcatgtttaagcaaaagcacacccaaatccagcagcaacggaaccaaacgttccgttagattttacccagtgagtatcatcgtagacgaagattgtcagccatgtggacataaaaatctgtacgaagaaaaaatacccaaaccagagtctctaaagaataatatcagaaacaccgttaacgaagagctcaaatttcattcaatggagaaaaatcgtcgagtagaagaagctactaaggagttgctgagaaattatcagagaaattcaaattcccaaatcaagaaaatggaaattttcgacgatgaagatgatgacgacgatgatggtgcaagttgtgctagttcagatttattcgaacttgataatctttctgcaattggaatagatagtaataggtatctcgaagaattacccgtttacgaaactactcatctcgatactaatcgagccattgctagtggtttgattttgtaataaaagtgtattatttattgttaactaatgtaatttttgtaattggtttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="+" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="92503" stop="93737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92803" g_stop="93436" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="659"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="+" ref_id="SGN-E552420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92803" e_stop="93436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</genome_strand>
        <mrna_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694605" ref_strand="+" ref_description="SGN-E694605 [LH_Ea04F19](-)">
      <seq>agacttcacagatccagtggtgctttctgccgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtgggcttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggcagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggcgctgctagttctatatgccgatttggaaggatgcatgtgccaggtattactattgaagaatgagctatacaatgagaatagctagaggtttttcaactttatgaagtgaaacctatttatcagtagtggctcgaagatttcagtgttgtattctatatttgatcatgttacaccctagtaagtacaatatctggggacatgcttttttactccagataatatttactgcttttcatttgtgaaatgtgagataaaaagttttggtcttaatgcctgaaagtgtcaatgcattaataatggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110347" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110047" g_stop="110017" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="202" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108827" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="639" r_length="437" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E694605" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110047" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGATATCTTAGCTTCATGTTATC</genome_strand>
        <mrna_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCC........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGGCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGCAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCCGATTTGGAAGGATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGGTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACCCT--AGTAAGTACAATATCTGGGGACATGCTTTTTTACTCCAGATAATATTTACTGCTTTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTAATGCCTGAAAGTGTCAATGCATTAATAA-TGGATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690766" ref_strand="+" ref_description="SGN-E690766 [LH_Ea04F20]">
      <seq>ctttaaagttacagatccagtggtgctttctgccgatagctttggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtgggcttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggcagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggcgctgctagttctatatgccgatttggaaggatgcatgtgccaggtattactattgaagaatgagctatacaatgagaatagctagaggtttttcaactttatgaagtgaaacctatttatcagtagtggctcgaagatttcagtgttgtattctatatttgatcatgttacaccctagtaagtacaatatctggggacatgcttttttactccagataatatttactgcttttcatttgtgaaatgtgagataaaaagttttggtcttggatcctgaaagtgtcaatgcattaataattggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110347" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110051" g_stop="110017" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="205" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108846" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="624" r_length="419" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="636"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E690766" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110051" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGAT</genome_strand>
        <mrna_strand>CTTTAAAGTT-ACAGATCCAGTGGTGCTTTCTGCC........................................................................................................................................................................................................................GATAGCTTTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGGCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGCAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCCGATTTGGAAGGATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGGTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACCCT--AGTAAGTACAATATCTGGGGACATGCTTTTTTACTCCAGATAATATTTACTGCTTTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCATTAATAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690765" ref_strand="+" ref_description="SGN-E690765 [LH_Ea04F19]">
      <seq>tagacttcacagatccagtggtgctttctgccgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtgggcttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggcagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggcgctgctagttctatatgccgatttggaaggatgcatgtgccaggtattactattgaagaatgagctatacaatgagaatagctagaggtttttcaactttatgaagtgaaacctatttatcagtagtggctcgaagatttcagtgttgtattctatatttgatcatgttacaccctagtaagtacaatatctggggacatgcttttttactccagataatatttactgcttttcatttgtgaaatgtgagataaaaagttttggtcttggatcctgaaagtgtcaatgcattaataattggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110347" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110048" g_stop="110017" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="203" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108846" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="622" r_length="419" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="634"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E690765" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110048" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGAT</genome_strand>
        <mrna_strand>TAGACTTCACAGATCCAGTGGTGCTTTCTGCC........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGGCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGCAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCCGATTTGGAAGGATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGGTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACCCT--AGTAAGTACAATATCTGGGGACATGCTTTTTTACTCCAGATAATATTTACTGCTTTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCATTAATAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694606" ref_strand="+" ref_description="SGN-E694606 [LH_Ea04F20](-)">
      <seq>agacttcacagatccagtggtgctttctgccgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtgggcttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggcagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggcgctgctagttctatatgccgatttggaaggatgcatgtgccaggtattactattgaagaatgagctatacaatgagaatagctagaggtttttcaactttatgaagtgaaacctatttatcagtagtggctcgaagatttcagtgttgtattctatatttgatcatgttacaccctagtaagtacaatatctggggacatgcttttttactccagataatattttctgaggttcatttgtgaaatgtgagataaaaagttttggtttgtgaggctgaaagtgtcaatgcattaataatggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110347" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110047" g_stop="110017" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="202" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108846" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="620" r_length="418" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="631"/>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E694606" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110047" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGAT</genome_strand>
        <mrna_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCC........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGGCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGCAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCCGATTTGGAAGGATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGGTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACCCT--AGTAAGTACAATATCTGGGGACATGCTTTTTTACTCCAGATAATATTTTCTGAGGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTTTGTGAGGCTGAAAGTGTCAATGCATTAATAA-TGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597770" ref_strand="+" ref_description="SGN-E597770 [67642]">
      <seq>gtggctcgaagatttcagtgttgtattctatatttgatcatgttacactctagagtaagtataatatctggggacatgctttattccttcagataatatttactgctgttcattttgtgaaatgtgagataaaaagttttgatcctagatcctaaaagtgtctaggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="109326" stop="108559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109026" g_stop="108857" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E597770" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109026" e_stop="108857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCA-TTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTT</genome_strand>
        <mrna_strand>GTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACTCTAGAGTAAGTATAATATCTGGGGACATGCTTTATTCCTTCAGATAATATTTACTGCTGTTCATTTTGTGAAATGTGAGATAAAAAGTTTTGATCCTAGATCCTAAAAGTGTCTAGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612659" ref_strand="+" ref_description="SGN-E612659 [62424]">
      <seq>gcaacatgaagctgaatctggacagattgcttgcaaaaatgtgggaagcgatgggtcttgtcagaatttacacaaagcctcaaggccagcaaccagacttcacagatcctgtggtcctttctgctgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtgtggggtactagtgcaaggcactccccccagcattgtggccttgcgcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggtagaggccggttcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggaggtgctagttctatatgccgatctggaagaatgcatgtgccaggtattactattgaagaatgagctatacattgagaatagctagaggtttcttcaactttatgaagtgaaacctatttatcagaagtggctcgaagatttcagtgtcgtattctatatttgatcatgttacactctagagtaagtataatatctggggacatgctttattccttcagataatatttactgctgtgcattttgtcgaaatgtgagataaaaagttctgatcctagatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110436" stop="108574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110130" g_stop="110017" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="125" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="296" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108873" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="693" r_length="397" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E612659" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110130" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGA-GTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCA-TTTGT-GAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTG</genome_strand>
        <mrna_strand>CTGAATCTGGACAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAATTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCTGTGGTCCTTTCTGCT........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTGTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCGCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGTAGAGGCCGGTTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGAGGTGCTAGTTCTATATGCCGATCTGGAAGAATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACATTGAGAATAGCTAGAGGTTTCTTCAACTTTATGAAGTGAAACCTATTTATCAGAAGTGGCTCGAAGATTTCAGTGTCGTATTCTATATTTGATCATGTTAC-ACTCTAGAGTAAGTATAATATCTGGGGACATGCTTTATTCCTTCAGATAATATTTACTGCTGTGCATTTTGTCGAAATGTGAGATAAAAAGTTCTGATCCTAGATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346027" ref_strand="+" ref_description="SGN-E346027 [cTOF-24-K14]">
      <seq>aaatactgcatgaatacaagatccacaatgctgaggtgttatttcgtgaagatgccacagtggatgaccttattgatgttattgagggcaatcgtaaatacatgaagtgcatatatgtctacaacaagatagatgttgttggtattgatgatgtagacagattagccagacagccaaactctgttgtcatcagctgcaacatgaagctgaatctggatagattgcttgcaaaaatgtgggaagcgatgggtcttgtcagagtttacacaaagcctcaaggccagcaaccagacttcacagatccagtggtgctttctgctgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtggccttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggtagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacctgattgagccagatagtggcgctgctagttctatatgctgatctggtaggatccatgtgccangtattactattgaagaatgagctatacaatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="111277" stop="108774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110977" g_stop="110943" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102">
            <donor d_prob="0.635" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110840" g_stop="110670" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="206" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110669" i_stop="110131" i_length="539">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110130" g_stop="110017" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="320" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="491" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109267" g_stop="109074" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="685" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E346027" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110977" e_stop="110943"/>
          <exon e_start="110840" e_stop="110670"/>
          <exon e_start="110130" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="109074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGAACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCTCTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAGGTATTTCAAAATTTTGTGAGATTCATTAGCAGATGAGATGAGCTATAGCATGTTTTGGTGACCCATAAGCTCATTGCTCTTATCTAATTTTGTGTCAAGGTACTACAATCATTATAATTCGTTGTTATTGGACATTTGCAAACATATATATTGGTTCCAAGATCAAATAACATATTTGGGTGCGCATAAAGTTAATTGCAGCTCATGATAGTATATGAAGTCTTTCTTTTGCGTGGCTCTGGAGAATTTCCAAAACTTGGTTTGACCAGGAGAATCTTCTTACCTGTAGTTTATCCTTCTGCAAATAAGAACACTCTTATGGTCACTAAGATACTTCCAAGTTGGTTTTTGATCTTGATGATGGAACAGAAAAGATTTACTTTGTTTTCCTTTGCCCGATTTGGACATGGCTTTTGAATAATGGGTTCACTTCCTCTGATTTTTGAATTTGGCAAACGATCTCTACATACTGACATGCTCTTTAGAAGTTTCCTGCATTGTCTATATAGTTAATGTTTGCATTTATTTTAATGATACAGCTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAA</genome_strand>
        <mrna_strand>AAATACTGCATGAATACAAGATCCACAATGCTGAG......................................................................................................GTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCAGTGGTGCTTTCTGCT........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCANGTATTACTATTGAAGAATGAGCTATACAATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600377" ref_strand="+" ref_description="SGN-E600377 [53387]">
      <seq>ccgggaatcattgaaggtgcatctgaaggcaaggggcgtggtaggcaggtcattgctgtttctaagtcagcagacattgtattaatggttctcgatgcttcaaaaagtgaaggccatcggcaaatattgacaaaggagctggaagcggtgggcctacgattaaacaagagacctcctcagatatacttcaagaagaaaaagactggtggaatttctttcaatagcactctgcatctgacacatgtggatgagaagctatgctatcaaattctgcatgaatacaagatccacaatgctgaggtgttatttcgtgaagatgctacagtggatgacctaattgatgttattgagggcaatcgtaaatacatgaagtgcatatatgtctacaacaagatagatgttgttggtattgatgatgtagacagattatcccgacagccaaactccgttgtcatcagctgcaacatgaagctgaatctggacagattgcttgcaaaaatgtgggaagcgatgggtcttgtcagaatttacacaaagcctcaaggccagcaaccagacttcacagatcctgtggtcctttctgctgatagaggtggctgtacggtagaagatttctgtaatcacatacatcgggagtcttgttaaggatgtgaagtatgtgttggtggtggggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="112665" stop="109421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112365" g_stop="112318" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112317" i_stop="112219" i_length="99">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112218" g_stop="112162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112161" i_stop="111523" i_length="639">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111522" g_stop="111448" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="180" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111062" g_stop="110943" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="300" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110840" g_stop="110670" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="471" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110669" i_stop="110131" i_length="539">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110130" g_stop="110017" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="585" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109800" g_stop="109712" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="676" r_length="91" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E600377" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112365" e_stop="112318"/>
          <exon e_start="112218" e_stop="112162"/>
          <exon e_start="111522" e_stop="111448"/>
          <exon e_start="111062" e_stop="110943"/>
          <exon e_start="110840" e_stop="110670"/>
          <exon e_start="110130" e_stop="110017"/>
          <exon e_start="109800" e_stop="109712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAGGTACATTGAAGATGGCTTTAGCAAATTGACAAACAATTTATGTTGTAATTTGTATAGTTGCTGGCGCTACAATCTCTGAACAATAGTCATTTTAAACAGGTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAAGTAAGTGATGATCATTGTGCCTGTTGAGGTTTATTTTTATCCTCTTTTGGTCATATTCGTTTCGTTACAATTGCACCTCAGCCCCGCCCAAGCTCAGGCTGTACTAAATTAAGCTGCTCTGAGCCCGCCTCAATCCTTGTAGCAGAGTCGAGCTTGGGCTGAGTTGGCACGGCCAGAGTTGAAGGTGAAAGTGTCATTGAAAAAAAACCAAATAACTAAAAGAAATGAAGTTGGTCTGTTTCTCAGCTGGTGAACACCTGGGGATGATCCCTCTATATATGCTCTCACCTATTAAAAAACTAATTATGCTTGGTAATACAGAAAAAAATTACAAACAGCATAATATTATATGACCCAAAAAACATAGTACATATTGTTCTCTGATCTCAGTGGTATAGAGAAGAAACAGAAAAAGAAGGCACACCGCACACATGGTACGAAAAAATGGAAAATTATAAAAGAAGAGTTTGTTTGGGTTTATATTCTCATTTCCAGCATTAATCTCGAAGAATATCAATGTTTCATTACATGTTAAATTGAAATTAGAATTAAGTCATCTCTCTGTCCAGACTTTCTGTTAGCTTATGCTTTCTTTTTTTTGTTGATTCACTCGAGTCTTAATTAAATATACAACATCAGAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTTCTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTGTTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCTTATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCTGTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTTTTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCGATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGAACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCTCTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAGGTATTTCAAAATTTTGTGAGATTCATTAGCAGATGAGATGAGCTATAGCATGTTTTGGTGACCCATAAGCTCATTGCTCTTATCTAATTTTGTGTCAAGGTACTACAATCATTATAATTCGTTGTTATTGGACATTTGCAAACATATATATTGGTTCCAAGATCAAATAACATATTTGGGTGCGCATAAAGTTAATTGCAGCTCATGATAGTATATGAAGTCTTTCTTTTGCGTGGCTCTGGAGAATTTCCAAAACTTGGTTTGACCAGGAGAATCTTCTTACCTGTAGTTTATCCTTCTGCAAATAAGAACACTCTTATGGTCACTAAGATACTTCCAAGTTGGTTTTTGATCTTGATGATGGAACAGAAAAGATTTACTTTGTTTTCCTTTGCCCGATTTGGACATGGCTTTTGAATAATGGGTTCACTTCCTCTGATTTTTGAATTTGGCAAACGATCTCTACATACTGACATGCTCTTTAGAAGTTTCCTGCATTGTCTATATAGTTAATGTTTGCATTTATTTTAATGATACAGCTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATC-GGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGT-TTGGGGTAC</genome_strand>
        <mrna_strand>CCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGGCGTGGTAGGCAG...................................................................................................GTCATTGCTGTTTCTAAGTCAGCAGACATTGTATTAATGGTTCTCGATGCTTCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTACGATTAAACAAGAGACCTCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................ATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATTCTGCATGAATACAAGATCCACAATGCTGAG......................................................................................................GTGTTATTTCGTGAAGATGCTACAGTGGATGACCTAATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTATCCCGACAGCCAAACTCCGTTGTCATCAGCTGCAACATGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGACAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAATTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCTGTGGTCCTTTCTGCT........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTGGTGGGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272771" ref_strand="+" ref_description="SGN-E272771 [cLEM-21-D2]">
      <seq>tacaatgataccaaaattcaattgcttgatcttcctggtatcattgaaggtgcatctgaaggcaaagggcgtggtaggcaggtcattgctgtttccaagtcatcagacattgttttgatggttctggatgcttcaaaaagtgaaggccatcgacaaattttaacaagggagctggaagctgtgggactgcgattaaataaacgacctcctcagatatacttcaagaagaaaaagacgggagggatttctttcaacagcacgttgcatctgacacatattgatgagaagctctgctatcaaattcttcatgaatacaagattcacaatgctgaggttttatttcgtgaagatgcaacagtggatgaccttattgatgttattgagggaaatcgtaaatacatgaagtgtatatatgtctacaacaagatagatgttgtcggtattgatgatgtggacagattatcccgacagccgaactccattgtcattagctgcaacttgaagctgaatctggacagactacttgcaaaaatgtgggaagcaatgggtcttgtcagagtttatacaaagcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="112698" stop="109760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112398" g_stop="112318" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112317" i_stop="112219" i_length="99">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112218" g_stop="112162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="138" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112161" i_stop="111523" i_length="639">
            <donor d_prob="0.947" d_score="0.88"/>
            <acceptor a_prob="0.976" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111522" g_stop="111448" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="213" r_length="75" r_score="0.853"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385">
            <donor d_prob="0.957" d_score="0.84"/>
            <acceptor a_prob="0.825" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111062" g_stop="110943" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="333" r_length="120" r_score="0.900"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102">
            <donor d_prob="0.635" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110840" g_stop="110670" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="504" r_length="171" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110669" i_stop="110131" i_length="539">
            <donor d_prob="0.916" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110130" g_stop="110060" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="575" r_length="71" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E272771" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112398" e_stop="112318"/>
          <exon e_start="112218" e_stop="112162"/>
          <exon e_start="111522" e_stop="111448"/>
          <exon e_start="111062" e_stop="110943"/>
          <exon e_start="110840" e_stop="110670"/>
          <exon e_start="110130" e_stop="110060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGATACTAAAATTCAATTGCTTGATCTTCCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAGGTACATTGAAGATGGCTTTAGCAAATTGACAAACAATTTATGTTGTAATTTGTATAGTTGCTGGCGCTACAATCTCTGAACAATAGTCATTTTAAACAGGTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAAGTAAGTGATGATCATTGTGCCTGTTGAGGTTTATTTTTATCCTCTTTTGGTCATATTCGTTTCGTTACAATTGCACCTCAGCCCCGCCCAAGCTCAGGCTGTACTAAATTAAGCTGCTCTGAGCCCGCCTCAATCCTTGTAGCAGAGTCGAGCTTGGGCTGAGTTGGCACGGCCAGAGTTGAAGGTGAAAGTGTCATTGAAAAAAAACCAAATAACTAAAAGAAATGAAGTTGGTCTGTTTCTCAGCTGGTGAACACCTGGGGATGATCCCTCTATATATGCTCTCACCTATTAAAAAACTAATTATGCTTGGTAATACAGAAAAAAATTACAAACAGCATAATATTATATGACCCAAAAAACATAGTACATATTGTTCTCTGATCTCAGTGGTATAGAGAAGAAACAGAAAAAGAAGGCACACCGCACACATGGTACGAAAAAATGGAAAATTATAAAAGAAGAGTTTGTTTGGGTTTATATTCTCATTTCCAGCATTAATCTCGAAGAATATCAATGTTTCATTACATGTTAAATTGAAATTAGAATTAAGTCATCTCTCTGTCCAGACTTTCTGTTAGCTTATGCTTTCTTTTTTTTGTTGATTCACTCGAGTCTTAATTAAATATACAACATCAGAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTTCTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTGTTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCTTATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCTGTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTTTTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCGATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGAACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCTCTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAGGTATTTCAAAATTTTGTGAGATTCATTAGCAGATGAGATGAGCTATAGCATGTTTTGGTGACCCATAAGCTCATTGCTCTTATCTAATTTTGTGTCAAGGTACTACAATCATTATAATTCGTTGTTATTGGACATTTGCAAACATATATATTGGTTCCAAGATCAAATAACATATTTGGGTGCGCATAAAGTTAATTGCAGCTCATGATAGTATATGAAGTCTTTCTTTTGCGTGGCTCTGGAGAATTTCCAAAACTTGGTTTGACCAGGAGAATCTTCTTACCTGTAGTTTATCCTTCTGCAAATAAGAACACTCTTATGGTCACTAAGATACTTCCAAGTTGGTTTTTGATCTTGATGATGGAACAGAAAAGATTTACTTTGTTTTCCTTTGCCCGATTTGGACATGGCTTTTGAATAATGGGTTCACTTCCTCTGATTTTTGAATTTGGCAAACGATCTCTACATACTGACATGCTCTTTAGAAGTTTCCTGCATTGTCTATATAGTTAATGTTTGCATTTATTTTAATGATACAGCTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCA</genome_strand>
        <mrna_strand>TACAATGATACCAAAATTCAATTGCTTGATCTTCCTGGTATCATTGAAGGTGCATCTGAAGGCAAAGGGCGTGGTAGGCAG...................................................................................................GTCATTGCTGTTTCCAAGTCATCAGACATTGTTTTGATGGTTCTGGATGCTTCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGCCATCGACAAATTTTAACAAGGGAGCTGGAAGCTGTGGGACTGCGATTAAATAAACGACCTCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................ATATACTTCAAGAAGAAAAAGACGGGAGGGATTTCTTTCAACAGCACGTTGCATCTGACACATATTGATGAGAAGCTCTGCTATCAAATTCTTCATGAATACAAGATTCACAATGCTGAG......................................................................................................GTTTTATTTCGTGAAGATGCAACAGTGGATGACCTTATTGATGTTATTGAGGGAAATCGTAAATACATGAAGTGTATATATGTCTACAACAAGATAGATGTTGTCGGTATTGATGATGTGGACAGATTATCCCGACAGCCGAACTCCATTGTCATTAGCTGCAACTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGACAGACTACTTGCAAAAATGTGGGAAGCAATGGGTCTTGTCAGAGTTTATACAAAGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290993" ref_strand="+" ref_description="SGN-E290993 [cLET-8-N21]">
      <seq>tgaaggtgcatctgaaggcaagggtcgtggtaggcaggtcattgctgtttctaagtcagcggacattgtattaatggttctcgatgcttcaaaaagtgaaggccatcggcaaatattgacaaaggagctggaagcggtgggcctgcgactaaacaagaaacctcctcagatatacttcaagaagaaaaagactggtggaatttctttcaatagcactctgcatctgacacatgtggatgagaagctatgctatcaaatactgcatgaatacaagatccacaatgctgaggtgttatttcgtgaagatgccacagtggatgaccttattgatgttattgagggcaatcgtaaatacatgaagtgcatatatgtctacaacaagatagatgttgttggtattgatgatgtagacagattagccagacagccaaactctgttgtcatcagctgcaacatgaagctgaatctggatagattgcttgcaaaaatgtgggaagcgatgggtcttgtcagagtttacacaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="112654" stop="109762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112354" g_stop="112318" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112317" i_stop="112219" i_length="99">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112218" g_stop="112162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="94" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112161" i_stop="111523" i_length="639">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111522" g_stop="111448" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="169" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111062" g_stop="110943" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="289" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110840" g_stop="110670" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="460" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110669" i_stop="110131" i_length="539">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110130" g_stop="110062" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="529" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E290993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112354" e_stop="112318"/>
          <exon e_start="112218" e_stop="112162"/>
          <exon e_start="111522" e_stop="111448"/>
          <exon e_start="111062" e_stop="110943"/>
          <exon e_start="110840" e_stop="110670"/>
          <exon e_start="110130" e_stop="110062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAGGTACATTGAAGATGGCTTTAGCAAATTGACAAACAATTTATGTTGTAATTTGTATAGTTGCTGGCGCTACAATCTCTGAACAATAGTCATTTTAAACAGGTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAAGTAAGTGATGATCATTGTGCCTGTTGAGGTTTATTTTTATCCTCTTTTGGTCATATTCGTTTCGTTACAATTGCACCTCAGCCCCGCCCAAGCTCAGGCTGTACTAAATTAAGCTGCTCTGAGCCCGCCTCAATCCTTGTAGCAGAGTCGAGCTTGGGCTGAGTTGGCACGGCCAGAGTTGAAGGTGAAAGTGTCATTGAAAAAAAACCAAATAACTAAAAGAAATGAAGTTGGTCTGTTTCTCAGCTGGTGAACACCTGGGGATGATCCCTCTATATATGCTCTCACCTATTAAAAAACTAATTATGCTTGGTAATACAGAAAAAAATTACAAACAGCATAATATTATATGACCCAAAAAACATAGTACATATTGTTCTCTGATCTCAGTGGTATAGAGAAGAAACAGAAAAAGAAGGCACACCGCACACATGGTACGAAAAAATGGAAAATTATAAAAGAAGAGTTTGTTTGGGTTTATATTCTCATTTCCAGCATTAATCTCGAAGAATATCAATGTTTCATTACATGTTAAATTGAAATTAGAATTAAGTCATCTCTCTGTCCAGACTTTCTGTTAGCTTATGCTTTCTTTTTTTTGTTGATTCACTCGAGTCTTAATTAAATATACAACATCAGAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTTCTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTGTTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCTTATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCTGTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTTTTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCGATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGAACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCTCTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAGGTATTTCAAAATTTTGTGAGATTCATTAGCAGATGAGATGAGCTATAGCATGTTTTGGTGACCCATAAGCTCATTGCTCTTATCTAATTTTGTGTCAAGGTACTACAATCATTATAATTCGTTGTTATTGGACATTTGCAAACATATATATTGGTTCCAAGATCAAATAACATATTTGGGTGCGCATAAAGTTAATTGCAGCTCATGATAGTATATGAAGTCTTTCTTTTGCGTGGCTCTGGAGAATTTCCAAAACTTGGTTTGACCAGGAGAATCTTCTTACCTGTAGTTTATCCTTCTGCAAATAAGAACACTCTTATGGTCACTAAGATACTTCCAAGTTGGTTTTTGATCTTGATGATGGAACAGAAAAGATTTACTTTGTTTTCCTTTGCCCGATTTGGACATGGCTTTTGAATAATGGGTTCACTTCCTCTGATTTTTGAATTTGGCAAACGATCTCTACATACTGACATGCTCTTTAGAAGTTTCCTGCATTGTCTATATAGTTAATGTTTGCATTTATTTTAATGATACAGCTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCT</genome_strand>
        <mrna_strand>TGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAG...................................................................................................GTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................ATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAG......................................................................................................GTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280400" ref_strand="+" ref_description="SGN-E280400 [cLER-1-J13]">
      <seq>tccattacaatgatactaaaattcaattgcttgatcttccgggaatcattgaaggtgcatctgaaggcaagggtcgtggtaggcaggtcattgctgtttctaagtcagcggacattgtattaatggttctcgatgcttcaaaaagtgaaggccatcggcaaatattgacaaaggagctggaagcggtgggcctgcgactaaacaagaaacctcctcagatatacttcaagaagaaaaagactggtggaatttctttcaatagcactctgcatctgacacatgtggatgagaagctatgctatcaaatactgcatgaatacaagatccacaatgctgaggtgttatttcgcgaagatgccacagtggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="112703" stop="110508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112403" g_stop="112318" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112317" i_stop="112219" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112218" g_stop="112162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="143" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112161" i_stop="111523" i_length="639">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111522" g_stop="111448" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="218" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111062" g_stop="110943" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="338" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110840" g_stop="110808" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="371" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E280400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112403" e_stop="112318"/>
          <exon e_start="112218" e_stop="112162"/>
          <exon e_start="111522" e_stop="111448"/>
          <exon e_start="111062" e_stop="110943"/>
          <exon e_start="110840" e_stop="110808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATGATACTAAAATTCAATTGCTTGATCTTCCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAGGTACATTGAAGATGGCTTTAGCAAATTGACAAACAATTTATGTTGTAATTTGTATAGTTGCTGGCGCTACAATCTCTGAACAATAGTCATTTTAAACAGGTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAAGTAAGTGATGATCATTGTGCCTGTTGAGGTTTATTTTTATCCTCTTTTGGTCATATTCGTTTCGTTACAATTGCACCTCAGCCCCGCCCAAGCTCAGGCTGTACTAAATTAAGCTGCTCTGAGCCCGCCTCAATCCTTGTAGCAGAGTCGAGCTTGGGCTGAGTTGGCACGGCCAGAGTTGAAGGTGAAAGTGTCATTGAAAAAAAACCAAATAACTAAAAGAAATGAAGTTGGTCTGTTTCTCAGCTGGTGAACACCTGGGGATGATCCCTCTATATATGCTCTCACCTATTAAAAAACTAATTATGCTTGGTAATACAGAAAAAAATTACAAACAGCATAATATTATATGACCCAAAAAACATAGTACATATTGTTCTCTGATCTCAGTGGTATAGAGAAGAAACAGAAAAAGAAGGCACACCGCACACATGGTACGAAAAAATGGAAAATTATAAAAGAAGAGTTTGTTTGGGTTTATATTCTCATTTCCAGCATTAATCTCGAAGAATATCAATGTTTCATTACATGTTAAATTGAAATTAGAATTAAGTCATCTCTCTGTCCAGACTTTCTGTTAGCTTATGCTTTCTTTTTTTTGTTGATTCACTCGAGTCTTAATTAAATATACAACATCAGAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTTCTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTGTTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCTTATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCTGTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTTTTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCGATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGAACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCTCTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGGATGAC</genome_strand>
        <mrna_strand>TCCATTACAATGATACTAAAATTCAATTGCTTGATCTTCCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAG...................................................................................................GTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................ATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAG......................................................................................................GTGTTATTTCGCGAAGATGCCACAGTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272292" ref_strand="+" ref_description="SGN-E272292 [cLEM-19-L19]">
      <seq>tctcgatgcttcaaaaagagaaggccatcggcaaatattgacaaacgagctggaagcggtgggcctgccactaaacaagaaacctcctcagatatacttcaagaagaaaaagactggtggaatttctttcaatagcactctgcatctgacacatgtggatgagaagctatgctatcaaatactgcatgaatacaagatccacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-mWZNo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0142A05.2" temp_strand="-" temp_description="C00HBa0142A05.2  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="111824" stop="110647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111522" g_stop="111448" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="91" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111062" g_stop="110947" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="207" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.2" gen_strand="-" ref_id="SGN-E272292" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111522" e_stop="111448"/>
          <exon e_start="111062" e_stop="110947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTTCTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTGTTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCTTATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCTGTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTTTTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCGATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGC</genome_strand>
        <mrna_strand>AGAGAAGGCCATCGGCAAATATTGACAAACGAGCTGGAAGCGGTGGGCCTGCCACTAAACAAGAAACCTCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................ATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>210</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5295" PGL_stop="8980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5295" e_stop="5551"/>
            <exon e_start="6657" e_stop="7176"/>
            <exon e_start="8953" e_stop="8980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5295" e_stop="5551" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6657" e_stop="7176" e_length="520"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="7177" i_stop="8952" i_length="1776"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8953" e_stop="8980" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5295" stop="5551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5296" stop="5551"/>
              <exon start="6657" stop="6899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5299" stop="5551"/>
              <exon start="6657" stop="6789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5326" stop="5551"/>
              <exon start="6657" stop="7176"/>
              <exon start="8953" stop="8980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5327" stop="5551"/>
              <exon start="6657" stop="6901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5386" stop="5551"/>
              <exon start="6657" stop="6964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG : GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAG : GCATCAATAGAAGTGATCTGGTTGTCCT</gDNA_template>
            <first_frame> M  L  L  C  M  P  I  A  F  L  I  G  I  H  V  F  D  H  *  F  L  I  Y  Q  L  K  S  R  T  R  T  R  I  R  *  R  K  K  W  R  *  R  R  R  C  V  Q  Q  R  K  *  L  M  R  C  W  N  V  W  W  S  R  C  *  G  V  V  L  A  N  Q  R  K  F  R  H  F  I  N  K  N  P  W  L  N  R :   W  V  L  L  C  F  S  T  T  T  T  T  G  S  N  I  K  I  R  K  *  S  F  L  I  L  H  H  F  A  N  *  L  *  F  *  N  Q  L  *  *  H  I  *  N  *  C  I  D  Q  Y  T  Q  T  W  T  I  W  K  A  N  F  H  S  L  R  R  K  L  *  G  H  V  I  Y  L  Q  R  W  M  M  Q  K  L  F  R  Y  H  R  N  G  L  L  P  K  L  L  Y  S  *  L  I  Q  G  G  R  I  A  C  S  C  I  V  L  *  P  A  Q  F  G  P  L  L  R  N  I  L  M  S  L  Q  V  I  F  L  I  Q  S  A  *  A  K  R  K  K  L  T  C  F  Q  P  V  F  S  M  L  M  D  H  R  S  K  I  L  R  F  P  L  P  Q  K  Q  Q  :  A  S  I  E  V  I  W  L  S  </first_frame>
            <second_frame>  C  F  F  A  C  P  L  H  F  *  L  E  F  T  F  S  I  I  D  F  *  S  I  N  *  N  L  E  L  E  L  E  S  D  D  G  K  N  G  G  D  G  E  D  V  C  N  R  G  S  S  *  C  V  A  G  M  Y  G  G  A  V  V  R  A  *  F  L  Q  I  K  G  S  S  D  T  L  S  T  K  I  H  G  *  T   : G  G  C  C  C  V  S  L  Q  L  L  L  Q  E  A  T  S  R  S  E  N  R  V  S  *  F  C  I  I  L  P  I  S  C  S  S  E  T  N  F  D  D  I  Y  E  I  N  A  S  I  S  I  H  R  R  G  Q  F  G  K  P  T  F  T  H  *  E  G  N  Y  E  G  M  *  Y  I  F  N  A  G  *  C  R  S  C  S  A  I  T  E  M  A  Y  F  Q  S  C  C  I  L  N  *  F  K  E  G  E  L  L  A  H  A  *  F  Y  D  L  R  S  L  V  H  Y  *  E  T  S  *  C  L  F  K  L  S  F  *  F  K  V  H  K  Q  K  E  K  S  *  H  V  F  N  Q  S  S  V  C  *  W  I  I  A  P  R  S  C  A  F  R  C  H  R  S  N  R :   H  Q  *  K  *  S  G  C  P </second_frame>
            <third_frame>   A  S  L  H  A  H  C  I  F  D  W  N  S  R  F  R  S  L  I  F  D  L  S  T  K  I  *  N  *  N  *  N  Q  M  T  E  K  M  E  V  T  E  K  M  C  A  T  E  E  V  V  D  A  L  L  E  C  M  V  E  P  L  L  G  R  S  S  C  K  S  K  E  V  P  T  L  Y  Q  Q  K  S  M  A  K  Q  :  V  G  A  V  V  F  L  Y  N  Y  Y  Y  R  K  Q  H  Q  D  Q  K  I  E  F  L  N  F  A  S  F  C  Q  L  A  V  V  L  K  P  T  L  M  T  Y  M  K  L  M  H  R  S  V  Y  T  D  V  D  N  L  E  S  Q  L  S  L  T  E  K  E  I  M  R  A  C  D  I  S  S  T  L  D  D  A  E  V  V  P  L  S  Q  K  W  P  T  S  K  V  A  V  F  L  I  D  S  R  R  E  N  C  L  L  M  H  S  S  M  T  C  A  V  W  S  I  I  E  K  H  L  D  V  S  S  S  Y  L  F  D  S  K  C  I  S  K  K  K  K  A  N  M  F  S  T  S  L  Q  Y  A  D  G  S  S  L  Q  D  L  A  L  S  A  A  T  E  A  T   : G  I  N  R  S  D  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5390" stop="5551"/>
                    <exon start="6657" stop="7176"/>
                    <exon start="8953" stop="8978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMTEKMEVTEKMCATEEVVDALLECMVEPLLGRSSCKSKEVPTLYQQKSMAKQVGAVVFLYNYYYRKQHQDQKIEFLNFASFCQLAVVLKPTLMTYMKLMHRSVYTDVDNLESQLSLTEKEIMRACDISSTLDDAEVVPLSQKWPTSKVAVFLIDSRRENCLLMHSSMTCAVWSIIEKHLDVSSSYLFDSKCISKKKKANMFSTSLQYADGSSLQDLALSAATEATGINRSDLVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15558" PGL_stop="19948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15558" e_stop="15606"/>
            <exon e_start="16419" e_stop="16573"/>
            <exon e_start="18591" e_stop="18657"/>
            <exon e_start="19550" e_stop="19948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.521" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15606" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15607" i_stop="16418" i_length="812"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16419" e_stop="16573" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.864">
            <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18591" e_stop="18657" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.521">
            <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19550" e_stop="19948" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15558" stop="15606"/>
              <exon start="16419" stop="16573"/>
              <exon start="18591" stop="18657"/>
              <exon start="19550" stop="19936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16419" stop="16573"/>
              <exon start="18591" stop="18657"/>
              <exon start="19550" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16443" stop="16573"/>
              <exon start="18591" stop="18657"/>
              <exon start="19550" stop="19934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19622" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACG : GGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAG : CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG : GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATAATGCTCAGCACC</gDNA_template>
            <first_frame> E  D  E  I  A  L  C  N  K  T  I  Q  A  E  L  N   : G  G  E  N  E  A  L  K  D  V  C  N  D  M  C  K  E  D  E  D  S  A  N  Q  L  V  E  D  S  C  T  I  Q  Y  S  K  G  K  R  L  S  E  A  I  L  T  L  Q  N  Q  C  Q  :  Q  L  D  Q  F  C  C  R  N  N  W  V  L  P  T  Y  Q  V  F  P  L  E   : G  G  F  L  A  K  V  I  V  R  A  A  D  S  K  V  V  S  R  S  K  I  C  E  S  P  R  E  A  R  E  S  A  A  A  H  V  I  S  S  F  Q  K  *  E  S  A  *  S  K  G  V  C  C  C  K  H  E  C  N  E  *  L  R  G  S  S  E  S  I  A  L  Q  R  G  Y  Y  C  S  L  Q  V  V  P  K  I  E  S  V  L  P  F  S  P  V  N  S  T  Q  N  M  Y  S  *  V  K  L  C  K  N  V  *  T  Y  R  F  *  L  *  R  N  T  N  C  C  R  L  F  D  N  A  Q  H  </first_frame>
            <second_frame>  K  T  R  L  L  C  V  I  K  L  F  R  Q  N  *  T  :  G  V  K  M  K  L  L  K  M  S  V  M  T  C  V  K  K  M  K  T  V  P  I  N  W  *  K  T  H  V  L  F  N  I  A  R  E  K  D  C  P  R  L  F  L  L  C  K  T  N  V  S :   N  W  I  N  S  A  A  G  I  I  G  Y  C  Q  H  I  K  S  F  H  L  R  :  V  D  F  L  P  R  S  L  *  E  L  L  I  P  K  L  S  V  E  A  R  S  V  R  V  R  A  K  Q  G  N  P  L  L  R  T  *  F  Q  A  F  K  S  E  S  P  R  E  A  R  E  S  A  A  A  N  M  N  A  T  S  S  S  V  V  V  Q  N  P  *  L  C  K  G  A  I  T  A  L  C  K  L  Y  Q  R  S  N  L  S  C  H  F  P  L  *  T  Q  L  K  T  C  T  H  K  L  N  C  V  R  M  C  K  L  I  D  S  S  Y  E  E  I  P  T  V  V  D  S  S  I  M  L  S  T </second_frame>
            <third_frame>   R  R  D  C  F  V  *  *  N  Y  S  G  R  I  K  R :   G  *  K  *  S  S  *  R  C  L  *  *  H  V  *  R  R  *  R  Q  C  Q  S  T  G  R  R  L  M  Y  Y  S  I  *  Q  G  K  K  I  V  R  G  Y  S  Y  F  A  K  P  M  S   : A  T  G  S  I  L  L  Q  E  *  L  G  I  A  N  I  S  S  L  S  T  *  G :   W  I  S  C  Q  G  H  C  K  S  C  *  F  Q  S  C  Q  *  K  Q  D  L  *  E  S  A  R  S  K  G  I  R  C  C  A  R  D  F  K  L  S  K  V  R  V  R  V  K  Q  G  S  L  L  L  Q  T  *  M  Q  R  V  A  P  W  *  F  R  I  H  S  F  A  K  G  L  L  L  L  F  A  S  C  T  K  D  R  I  C  L  A  I  F  P  C  K  L  N  S  K  H  V  L  I  S  *  T  V  *  E  C  V  N  L  *  I  L  V  M  K  K  Y  Q  L  L  S  T  L  R  *  C  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15558" stop="15606"/>
                    <exon start="16419" stop="16573"/>
                    <exon start="18591" stop="18657"/>
                    <exon start="19550" stop="19680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDEIALCNKTIQAELNGGENEALKDVCNDMCKEDEDSANQLVEDSCTIQYSKGKRLSEAILTLQNQCQQLDQFCCRNNWVLPTYQVFPLEGGFLAKVIVRAADSKVVSRSKICESPREARESAAAHVISSFQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21202" PGL_stop="20564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21202" e_stop="20564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21202" e_stop="20564" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21202" stop="20564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTATACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</gDNA_template>
            <first_frame> Q  V  T  S  Y  H  H  N  L  G  *  H  L  L  W  L  *  Q  F  P  A  N  Y  S  Y  T  I  S  L  S  H  S  L  Y  C  S  F  D  L  S  H  V  K  V  L  A  V  F  K  G  I  Q  E  T  E  V  V  L  G  L  E  Y  Y  P  L  R  F  C  Y  E  N  A  M  R  G  H  V  Y  T  P  C  S  I  E  D  V  *  Q  T  *  H  N  E  I  F  G  R  R  N  K  P  L  V  L  T  T  *  S  R  L  C  V  C  N  I  R  C  V  L  C  H  L  F  L  D  F  E  F  D  *  Y  W  T  K  E  S  I  V  F  L  S  V  V  L  H  K  H  S  C  F  C  F  L  *  S  *  L  *  N  R  S  R  K  P  S  T  S  L  *  F  D  L  V  V  Y  V  F  A  W  W  K  F  L  L  E  F  K  F  K  S  E  M  L  I  T  S  S  V  G  L  C  V  K  Y  F  S  F  D  F  Y  L  Y  * </first_frame>
            <second_frame>  K  S  L  H  I  T  T  T  L  V  D  T  F  S  G  C  D  S  S  P  Q  T  I  P  T  Q  Y  H  C  P  I  L  C  T  A  H  S  I  S  L  M  *  R  S  L  Q  C  S  K  G  Y  K  R  L  K  W  S  L  D  W  S  I  T  L  S  D  S  V  M  K  M  L  *  E  A  M  Y  T  H  H  V  A  *  K  M  F  S  R  L  D  T  M  R  Y  S  G  E  E  T  S  L  *  Y  L  P  L  R  A  D  Y  A  Y  A  T  Y  V  V  C  Y  V  I  C  S  *  I  L  N  L  I  D  I  G  L  K  K  V  *  F  F  F  Q  W  F  Y  I  S  I  P  V  F  V  F  F  R  V  D  C  E  I  G  A  E  S  H  Q  L  H  F  N  L  I  *  W  S  M  S  S  H  G  G  S  S  C  S  N  L  S  S  N  Q  R  C  *  *  L  P  L  L  G  Y  V  S  N  I  F  H  L  I  F  I  F  T   </second_frame>
            <third_frame>   S  H  F  I  S  P  Q  P  W  L  T  P  S  L  A  V  T  V  P  R  K  L  F  L  H  N  I  T  V  P  F  F  V  L  L  I  R  S  L  S  C  K  G  P  C  S  V  Q  R  D  T  R  D  *  S  G  P  W  I  G  V  L  P  S  Q  I  L  L  *  K  C  Y  E  R  P  C  I  H  T  M  *  H  R  R  C  L  A  D  L  T  Q  *  D  I  R  E  K  K  Q  A  F  S  T  Y  H  L  E  Q  I  M  R  M  Q  H  T  L  C  V  M  S  S  V  L  R  F  *  I  *  L  I  L  D  *  R  K  Y  S  F  S  F  S  G  F  T  *  A  F  L  F  L  F  S  L  E  L  I  V  K  S  E  Q  K  A  I  N  F  T  L  I  *  F  S  G  L  C  L  R  M  V  E  V  P  A  R  I  *  V  Q  I  R  D  V  N  N  F  L  C  W  A  M  C  Q  I  F  F  I  *  F  L  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21151" stop="20942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPANYSYTISLSHSLYCSFDLSHVKVLAVFKGIQETEVVLGLEYYPLRFCYENAMRGHVYTPCSIEDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23576" PGL_stop="22856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23576" e_stop="22856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="23576" e_stop="22856" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23576" stop="22856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGGTTCTCTGCGATCGGAAAAATAGCAAAACCCTAGCTCAAAGCCCTAGAACAAATCAGGAGGGAGCCCATGGCGTATCAACACCAATCATCTAATCACACCGGAGACAACGACGACGGCAAGAATCGACGGCTCTATAACCCTTACCAAGACCTACAAGTTCCAAGCAAAACACTTTACAAGCTTCCTACCTCACCTGAGTTTCTGTTTCAGGAAGAATCTATTGCCCAGCGTAGATCATGGGGAGAGAATTTGACTTATTACACTGGTATCGGTTATCTCTCTGGGGCCGTTGCCGGCGCTGGTAAAGGATTTGTTGAAGGTGTGAAAGCTTCGGAGCCTGGTGATACTATGAAGCTCAGGATCAATAGAATCCTGAATGCGTCGGGTCATACGGGCCGGAAGTTTGGAAATCGAGCTGGTGTTATTGGGTTGCTTTATGCTGGGATGGAGAGTGGAATGGTTGCTATTAGGGATACGGATGATGTTATCAATAGCGTGGTTGCTGGCTTGGGGACTGGTGCGTTCTACAGGGCGGCTTCGGGGCTGAGGTCAGCTGCCGTGGCTGGAGTTATTGGTGGCGTCGTTGTTGGCTTGGGAGTGACTGGAAAACAGGCGCTAAAACGATACGTACCGATCTGAGATTTGTGCTGTGGTTTGCTTTTGGATTTATGACCTCAATCTTGATAGCTGTTATTTGTTTCAAAAATTTTGATAA</gDNA_template>
            <first_frame> L  G  F  S  A  I  G  K  I  A  K  P  *  L  K  A  L  E  Q  I  R  R  E  P  M  A  Y  Q  H  Q  S  S  N  H  T  G  D  N  D  D  G  K  N  R  R  L  Y  N  P  Y  Q  D  L  Q  V  P  S  K  T  L  Y  K  L  P  T  S  P  E  F  L  F  Q  E  E  S  I  A  Q  R  R  S  W  G  E  N  L  T  Y  Y  T  G  I  G  Y  L  S  G  A  V  A  G  A  G  K  G  F  V  E  G  V  K  A  S  E  P  G  D  T  M  K  L  R  I  N  R  I  L  N  A  S  G  H  T  G  R  K  F  G  N  R  A  G  V  I  G  L  L  Y  A  G  M  E  S  G  M  V  A  I  R  D  T  D  D  V  I  N  S  V  V  A  G  L  G  T  G  A  F  Y  R  A  A  S  G  L  R  S  A  A  V  A  G  V  I  G  G  V  V  V  G  L  G  V  T  G  K  Q  A  L  K  R  Y  V  P  I  *  D  L  C  C  G  L  L  L  D  L  *  P  Q  S  *  *  L  L  F  V  S  K  I  L  I  </first_frame>
            <second_frame>  L  G  S  L  R  S  E  K  *  Q  N  P  S  S  K  P  *  N  K  S  G  G  S  P  W  R  I  N  T  N  H  L  I  T  P  E  T  T  T  T  A  R  I  D  G  S  I  T  L  T  K  T  Y  K  F  Q  A  K  H  F  T  S  F  L  P  H  L  S  F  C  F  R  K  N  L  L  P  S  V  D  H  G  E  R  I  *  L  I  T  L  V  S  V  I  S  L  G  P  L  P  A  L  V  K  D  L  L  K  V  *  K  L  R  S  L  V  I  L  *  S  S  G  S  I  E  S  *  M  R  R  V  I  R  A  G  S  L  E  I  E  L  V  L  L  G  C  F  M  L  G  W  R  V  E  W  L  L  L  G  I  R  M  M  L  S  I  A  W  L  L  A  W  G  L  V  R  S  T  G  R  L  R  G  *  G  Q  L  P  W  L  E  L  L  V  A  S  L  L  A  W  E  *  L  E  N  R  R  *  N  D  T  Y  R  S  E  I  C  A  V  V  C  F  W  I  Y  D  L  N  L  D  S  C  Y  L  F  Q  K  F  *  * </second_frame>
            <third_frame>   W  V  L  C  D  R  K  N  S  K  T  L  A  Q  S  P  R  T  N  Q  E  G  A  H  G  V  S  T  P  I  I  *  S  H  R  R  Q  R  R  R  Q  E  S  T  A  L  *  P  L  P  R  P  T  S  S  K  Q  N  T  L  Q  A  S  Y  L  T  *  V  S  V  S  G  R  I  Y  C  P  A  *  I  M  G  R  E  F  D  L  L  H  W  Y  R  L  S  L  W  G  R  C  R  R  W  *  R  I  C  *  R  C  E  S  F  G  A  W  *  Y  Y  E  A  Q  D  Q  *  N  P  E  C  V  G  S  Y  G  P  E  V  W  K  S  S  W  C  Y  W  V  A  L  C  W  D  G  E  W  N  G  C  Y  *  G  Y  G  *  C  Y  Q  *  R  G  C  W  L  G  D  W  C  V  L  Q  G  G  F  G  A  E  V  S  C  R  G  W  S  Y  W  W  R  R  C  W  L  G  S  D  W  K  T  G  A  K  T  I  R  T  D  L  R  F  V  L  W  F  A  F  G  F  M  T  S  I  L  I  A  V  I  C  F  K  N  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23537" stop="22932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKALEQIRREPMAYQHQSSNHTGDNDDGKNRRLYNPYQDLQVPSKTLYKLPTSPEFLFQEESIAQRRSWGENLTYYTGIGYLSGAVAGAGKGFVEGVKASEPGDTMKLRINRILNASGHTGRKFGNRAGVIGLLYAGMESGMVAIRDTDDVINSVVAGLGTGAFYRAASGLRSAAVAGVIGGVVVGLGVTGKQALKRYVPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25360" PGL_stop="28499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25360" e_stop="25440"/>
            <exon e_start="25696" e_stop="25785"/>
            <exon e_start="25861" e_stop="25965"/>
            <exon e_start="26992" e_stop="27321"/>
            <exon e_start="27426" e_stop="27476"/>
            <exon e_start="27793" e_stop="27855"/>
            <exon e_start="27942" e_stop="28066"/>
            <exon e_start="28463" e_stop="28499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.803" e_score="0.990"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.726" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25360" e_stop="25440" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.864">
            <gDNA_intron_boundary i_start="25441" i_stop="25695" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25696" e_stop="25785" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.949">
            <gDNA_intron_boundary i_start="25786" i_stop="25860" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="25861" e_stop="25965" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.803">
            <gDNA_intron_boundary i_start="25966" i_stop="26991" i_length="1026"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="26992" e_stop="27321" e_length="330"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27322" i_stop="27425" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27426" e_stop="27476" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.856">
            <gDNA_intron_boundary i_start="27477" i_stop="27792" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27793" e_stop="27855" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.617">
            <gDNA_intron_boundary i_start="27856" i_stop="27941" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27942" e_stop="28066" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.726">
            <gDNA_intron_boundary i_start="28067" i_stop="28462" i_length="396"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28463" e_stop="28499" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25360" stop="25440"/>
              <exon start="25696" stop="25785"/>
              <exon start="25861" stop="25965"/>
              <exon start="26992" stop="27321"/>
              <exon start="27426" stop="27476"/>
              <exon start="27793" stop="27855"/>
              <exon start="27942" stop="28066"/>
              <exon start="28463" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAG : TTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAG : GTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCGTTAAG : TCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCGTATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAG : CCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAG : GTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACT : TGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAG : GCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</gDNA_template>
            <first_frame> Y  S  Q  S  V  N  H  H  Y  S  R  R  S  Q  Q  Y  W  D  K  F  Y  K  L  H  K  N  K  :  F  F  K  D  R  H  Y  L  E  K  D  W  G  R  Y  F  D  D  E  I  E  S  S  N  G  K  V  V  L  E  :  V  G  C  G  A  G  N  T  I  F  P  L  I  A  T  F  P  K  L  Y  V  H  A  C  D  F  S  A  K  A  V  T  L  V  K  :  S  H  A  N  Y  S  S  E  K  I  N  V  F  V  C  D  A  A  M  D  D  L  C  A  N  V  M  P  F  T  V  D  V  V  T  L  V  S  E  G  S  K  *  *  *  S  Y  L  N  M  Y  *  V  I  K  A  *  C  S  P  K  S  N  L  I  N  R  I  S  F  L  R  E  K  C  M  P  T  *  A  S  N  S  F  K  *  I  F  T  L  S  A  V  S  P  C  K  M  A  S  I  L  E  N  C  K  Q  V  L  K  :  P  N  G  H  I  L  L  R  D  Y  A  V  G  D  S  A  Q  :  V  K  L  H  D  R  N  Q  M  I  S  E  N  F  Y  F  R  G  D  G  T  :  C  S  F  Y  F  S  E  T  Y  A  S  T  L  F  Q  S  A  G  F  A  I  V  D  I  N  T  Y  C  K  E  I  T  N  H  S  Q  N  I  T  M  Q  R :   R  W  I  R  G  I  F  G  R  S  *  L </first_frame>
            <second_frame>  T  A  R  V  *  T  T  I  T  A  E  G  L  N  S  T  G  I  S  S  T  S  S  T  K  T  S :   F  S  R  T  D  T  T  *  R  R  I  G  E  D  I  L  M  M  K  L  N  L  P  M  G  R  L  F  *  R :   W  A  V  E  R  V  I  R  F  F  L  S  *  L  R  F  R  S  S  M  F  T  P  V  I  S  Q  L  K  Q  *  P  S  L  S :   R  M  Q  I  T  V  Q  K  R  L  M  S  L  S  V  M  L  Q  W  M  I  S  V  L  M  S  C  L  L  P  L  M  L  *  P  W  *  V  K  G  V  S  N  D  N  H  I  *  I  C  I  K  *  L  K  H  S  V  H  L  K  A  I  *  *  T  V  Y  P  S  F  G  K  N  V  C  L  H  E  H  L  T  P  L  S  R  Y  L  H  C  L  Q  F  H  H  A  R  W  L  Q  F  W  R  T  V  S  K  Y  *  S :   Q  M  V  T  F  F  Y  E  I  M  Q  L  V  I  L  L  R :   *  N  C  M  T  E  T  R  *  L  V  R  T  F  T  S  E  E  M  E  L :   V  R  F  T  F  P  R  L  T  R  Q  P  C  F  K  V  L  V  L  Q  L  W  I  L  T  R  T  A  R  K  L  R  T  I  L  R  I  L  P  C  R   : G  A  G  Y  V  A  Y  L  V  V  H  D   </second_frame>
            <third_frame>   Q  P  E  C  K  P  P  L  Q  Q  K  V  S  T  V  L  G  *  V  L  Q  A  P  Q  K  Q   : V  F  Q  G  P  T  L  L  R  E  G  L  G  K  I  F  *  *  *  N  *  I  F  Q  W  E  G  C  S  R   : G  G  L  W  S  G  *  Y  D  F  S  S  H  S  Y  V  S  E  A  L  C  S  R  L  *  F  L  S  *  S  S  N  P  R  *   : V  A  C  K  L  Q  F  R  K  D  *  C  L  C  L  *  C  C  N  G  *  S  L  C  *  C  H  A  F  Y  R  *  C  C  N  L  G  K  *  R  E  *  V  M  I  I  I  S  E  Y  V  L  S  D  *  S  I  V  F  T  *  K  Q  F  N  K  P  Y  I  L  P  S  G  K  M  Y  A  Y  M  S  I  *  L  L  *  V  D  I  Y  I  V  C  S  F  T  M  Q  D  G  F  N  S  G  E  L  *  A  S  T  K   : A  K  W  S  H  S  F  T  R  L  C  S  W  *  F  C  S   : G  E  T  A  *  Q  K  P  D  D  *  *  E  L  L  L  P  R  R  W  N   : L  F  V  L  L  F  R  D  L  R  V  N  L  V  S  K  C  W  F  C  N  C  G  Y  *  H  V  L  Q  G  N  Y  E  P  F  S  E  Y  Y  H  A  E  :  A  L  D  T  W  H  I  W  S  F  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25360" stop="25440"/>
                    <exon start="25696" stop="25785"/>
                    <exon start="25861" stop="25965"/>
                    <exon start="26992" stop="27120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSQSVNHHYSRRSQQYWDKFYKLHKNKFFKDRHYLEKDWGRYFDDEIESSNGKVVLEVGCGAGNTIFPLIATFPKLYVHACDFSAKAVTLVKSHANYSSEKINVFVCDAAMDDLCANVMPFTVDVVTLVSEGSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27250" stop="27321"/>
                    <exon start="27426" stop="27476"/>
                    <exon start="27793" stop="27855"/>
                    <exon start="27942" stop="28066"/>
                    <exon start="28463" stop="28496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFTLSAVSPCKMASILENCKQVLKPNGHILLRDYAVGDSAQVKLHDRNQMISENFYFRGDGTCSFYFSETYASTLFQSAGFAIVDINTYCKEITNHSQNITMQRRWIRGIFGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33570" PGL_stop="31885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33570" e_stop="33026"/>
            <exon e_start="31980" e_stop="31885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.000" e_score="0.985"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="33570" e_stop="33026" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33025" i_stop="31981" i_length="1045"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="31980" e_stop="31885" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33570" stop="33026"/>
              <exon start="31980" stop="31953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296745" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33470" stop="33026"/>
              <exon start="31980" stop="31918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324023" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33455" stop="33026"/>
              <exon start="31980" stop="31885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341620" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33351" stop="33026"/>
              <exon start="31980" stop="31916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33350" stop="33026"/>
              <exon start="31980" stop="31953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440206" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGATAGATACAGAACCCCAGAGTGGCACACATTCCAATTCAAACACACTCTTGACACTTTCTTTGACAGGCTCCTTCTCACTGGGCAATGGAAGGGCCACTACAGATGCCTTAAGTGTAGGGCCACTAGTAATTTCATCATCTGGAAGAGCAACTATGGTATTACTAACCTTTCTATCTAAACTCCTTTCTTCCAAACTTATGACCTTGGCAACTATTTGTCCATTGTCAATACCCTCAATTTCAACAGCAATTGGCAAGCTCAACTGCAAGCTAGCGCCCAGTGGCAACAACTCCTCGCCATTAATTCCACATGGATCCTCTCCAACAGATAAAATCTCATCTTCATCACTTCCCTGAATGATGCTATCGCTAACAATCAGGCCATTTTCAGCTCCCAATACAGTCTGCGGCAGACTACATTTTCCAGAGCTTTCTCCTAGGGTCAACAAGGGAACTCTACCAACATCAACTTTCATACCGTTGCTTTTTCCATCCCAACTGGTATTTGACTCAGCATGCAACAAAGATGTAGGATCTGAAA : AAAAACCCTTTTACCAAAACACCTTGCAGCTACAGCCCCTTTACAAGATTTTATTTTCTTTTTTTCTTTGTGATACACATGAGAGAGAACAAAAAT</gDNA_template>
            <first_frame> T  D  R  Y  R  T  P  E  W  H  T  F  Q  F  K  H  T  L  D  T  F  F  D  R  L  L  L  T  G  Q  W  K  G  H  Y  R  C  L  K  C  R  A  T  S  N  F  I  I  W  K  S  N  Y  G  I  T  N  L  S  I  *  T  P  F  F  Q  T  Y  D  L  G  N  Y  L  S  I  V  N  T  L  N  F  N  S  N  W  Q  A  Q  L  Q  A  S  A  Q  W  Q  Q  L  L  A  I  N  S  T  W  I  L  S  N  R  *  N  L  I  F  I  T  S  L  N  D  A  I  A  N  N  Q  A  I  F  S  S  Q  Y  S  L  R  Q  T  T  F  S  R  A  F  S  *  G  Q  Q  G  N  S  T  N  I  N  F  H  T  V  A  F  S  I  P  T  G  I  *  L  S  M  Q  Q  R  C  R  I  *  K :   K  T  L  L  P  K  H  L  A  A  T  A  P  L  Q  D  F  I  F  F  F  S  L  *  Y  T  *  E  R  T  K   </first_frame>
            <second_frame>  Q  I  D  T  E  P  Q  S  G  T  H  S  N  S  N  T  L  L  T  L  S  L  T  G  S  F  S  L  G  N  G  R  A  T  T  D  A  L  S  V  G  P  L  V  I  S  S  S  G  R  A  T  M  V  L  L  T  F  L  S  K  L  L  S  S  K  L  M  T  L  A  T  I  C  P  L  S  I  P  S  I  S  T  A  I  G  K  L  N  C  K  L  A  P  S  G  N  N  S  S  P  L  I  P  H  G  S  S  P  T  D  K  I  S  S  S  S  L  P  *  M  M  L  S  L  T  I  R  P  F  S  A  P  N  T  V  C  G  R  L  H  F  P  E  L  S  P  R  V  N  K  G  T  L  P  T  S  T  F  I  P  L  L  F  P  S  Q  L  V  F  D  S  A  C  N  K  D  V  G  S  E   : K  K  P  F  Y  Q  N  T  L  Q  L  Q  P  L  Y  K  I  L  F  S  F  F  L  C  D  T  H  E  R  E  Q  K  </second_frame>
            <third_frame>   R  *  I  Q  N  P  R  V  A  H  I  P  I  Q  T  H  S  *  H  F  L  *  Q  A  P  S  H  W  A  M  E  G  P  L  Q  M  P  *  V  *  G  H  *  *  F  H  H  L  E  E  Q  L  W  Y  Y  *  P  F  Y  L  N  S  F  L  P  N  L  *  P  W  Q  L  F  V  H  C  Q  Y  P  Q  F  Q  Q  Q  L  A  S  S  T  A  S  *  R  P  V  A  T  T  P  R  H  *  F  H  M  D  P  L  Q  Q  I  K  S  H  L  H  H  F  P  E  *  C  Y  R  *  Q  S  G  H  F  Q  L  P  I  Q  S  A  A  D  Y  I  F  Q  S  F  L  L  G  S  T  R  E  L  Y  Q  H  Q  L  S  Y  R  C  F  F  H  P  N  W  Y  L  T  Q  H  A  T  K  M  *  D  L  K  :  K  N  P  F  T  K  T  P  C  S  Y  S  P  F  T  R  F  Y  F  L  F  F  F  V  I  H  M  R  E  N  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33569" stop="33210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIDTEPQSGTHSNSNTLLTLSLTGSFSLGNGRATTDALSVGPLVISSSGRATMVLLTFLSKLLSSKLMTLATICPLSIPSISTAIGKLNCKLAPSGNNSSPLIPHGSSPTDKISSSSLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33209" stop="33026"/>
                    <exon start="31980" stop="31886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMLSLTIRPFSAPNTVCGRLHFPELSPRVNKGTLPTSTFIPLLFPSQLVFDSACNKDVGSEKKPFYQNTLQLQPLYKILFSFFLCDTHEREQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="31909" PGL_stop="37194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32792" e_stop="33735"/>
            <exon e_start="34032" e_stop="34388"/>
            <exon e_start="34536" e_stop="34641"/>
            <exon e_start="36579" e_stop="37194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.653" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32792" e_stop="33735" e_length="944"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="34032" e_stop="34388" e_length="357"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34536" e_stop="34641" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.653" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36579" e_stop="37194" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32792" stop="33354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33028" stop="33574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33116" stop="33536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33143" stop="33346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33144" stop="33735"/>
              <exon start="34032" stop="34086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33260" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33300" stop="33735"/>
              <exon start="34032" stop="34257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33313" stop="33735"/>
              <exon start="34032" stop="34109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33735"/>
              <exon start="34032" stop="34243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33469" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33545" stop="33735"/>
              <exon start="34032" stop="34312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33674" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34372" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="37171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34538" stop="34641"/>
              <exon start="36579" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34544" stop="34641"/>
              <exon start="36579" stop="37088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267017" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34574" stop="34641"/>
              <exon start="36579" stop="37082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36643" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414708" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="36960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36772" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36887" stop="37194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG : GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA : CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG : GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATG</gDNA_template>
            <first_frame> Q  S  Y  S  V  K  H  K  A  W  N  N  L  L  L  V  V  L  H  G  L  T  R  L  T  Q  L  H  I  V  F  T  R  K  N  *  W  K  R  C  L  Q  L  L  L  L  H  S  A  *  A  A  L  S  V  I  T  L  Q  F  R  T  M  *  K  S  Q  G  S  N  *  *  L  T  Q  L  A  Y  F  Q  I  L  H  L  C  C  M  L  S  Q  I  P  V  G  M  E  K  A  T  V  *  K  L  M  L  V  E  F  P  C  *  P  *  E  K  A  L  E  N  V  V  C  R  R  L  Y  W  E  L  K  M  A  *  L  L  A  I  A  S  F  R  E  V  M  K  M  R  F  Y  L  L  E  R  I  H  V  E  L  M  A  R  S  C  C  H  W  A  L  A  C  S  *  A  C  Q  L  L  L  K  L  R  V  L  T  M  D  K  *  L  P  R  S  *  V  W  K  K  G  V  *  I  E  R  L  V  I  P  *  L  L  F  Q  M  M  K  L  L  V  A  L  H  L  R  H  L  *  W  P  F  H  C  P  V  R  R  S  L  S  K  K  V  S  R  V  C  L  N  W  N  V  C  H  S  G  V  L  Y  L  S  V  E  R  D  R  R  W  R  M  L  L  W  L  F  L  I  S  *  K  F  L  S  R  C  L  L  V  I  V  *  L  M  D  *  V  K  V  *  V  T  *  H  L  I  S  M  E  Y  M  M  V  M  E  D  L  R :   L  R  I  I  A  V  N  V  F  I  *  H  *  L  R  N  *  N  F  P  N  M  I  W  W  M  E  V  *  G  I  P  G  R  C  S  G  R  R  F  L  L  I  A  F  S  R  L  M  M  K  L  E  E  R  S  *  I  S  V  M  T  T  L  M  P  L  A  A  P  L  S  L  *  L  Q  K  L  L  G  P  P  Q  L  *  R  *  F  V  H  L  I  L  *  L  L  T  V  G  I  Q  E  Q  S  F  I  V  A  K  K  Q  W  H  C  Q  S  I  T  N :   Q  A  E  K  M  S  M  P  E  L  K  H  L  V  V  R  S  F  S  G  M  D  I  V  Y  L  A  F  L  Q  C  Q  D  L  L  :  V  T  D  I  *  N  H  G  *  Y  L  N  Q  K  L  C  L  Y  H  V  L  E  K  M  N  A  *  F  *  P  V  T  V  C  G  M  *  *  R  M  K  K  L  V  K  W  L  D  G  E  F  C  C  G  T  K  R  T  G  L  T  L  C  L  K  G  A  R  E  W  I  L  L  H  K  Q  Q  R  S  I  F  H  R  W  L  F  R  K  A  A  K  T  I  Y  P  *  L  W  W  T  L  K  L  T  G  S  S  K  A  K  V  R  D  D  M  F  T  T  F  G  L  V  *  I  C  T  R  R  R  V  *  I  S  L  L  H  N  S  V  H  *  F  F  L  W  A  *  G  V  C  M  R  I  V  F  *  Q  C  I  I  E  E  K  T  V  D  K  R  R  L  S  K  F  F  G  V  C  C  A  R  K  W  L  C  K  L  S  M  L  *  Q  I  S  E  M  Q  F  L  T  S  S  V  R  V  Y  </first_frame>
            <second_frame>  S  P  T  L  *  N  I  K  L  G  T  I  C  C  W  *  C  C  T  D  *  R  G  *  L  N  C  I  L  F  S  L  E  R  I  N  G  R  D  V  S  S  C  C  C  Y  T  Q  L  K  Q  L  Y  L  *  *  P  C  N  F  E  P  C  R  N  H  K  A  Q  I  S  D  *  H  S  *  L  T  F  R  S  Y  I  F  V  A  C  *  V  K  Y  Q  L  G  W  K  K  Q  R  Y  E  S  *  C  W  *  S  S  L  V  D  P  R  R  K  L  W  K  M  *  S  A  A  D  C  I  G  S  *  K  W  P  D  C  *  R  *  H  H  S  G  K  *  *  R  *  D  F  I  C  W  R  G  S  M  W  N  *  W  R  G  V  V  A  T  G  R  *  L  A  V  E  L  A  N  C  C  *  N  *  G  Y  *  Q  W  T  N  S  C  Q  G  H  K  F  G  R  K  E  F  R  *  K  G  *  *  Y  H  S  C  S  S  R  *  *  N  Y  *  W  P  Y  T  *  G  I  C  S  G  P  S  I  A  Q  *  E  G  A  C  Q  R  K  C  Q  E  C  V  *  I  G  M  C  A  T  L  G  F  C  I  Y  L  W  K  E  T  G  D  G  G  C  S  C  G  C  S  *  F  H  E  N  S  Y  Q  D  V  Y  W  *  S  C  N  *  W  T  K  S  K  F  E  S  P  D  I  S  F  L  W  S  I  *  W  S  W  R  I  S   : G  C  G  L  L  P  *  T  C  S  S  S  I  S  *  G  I  K  T  S  Q  T  *  F  G  G  W  K  C  K  G  Y  P  A  G  A  V  G  E  G  F  Y  *  L  L  S  Q  G  *  *  *  S  W  R  K  G  H  R  S  L  *  *  Q  H  *  C  L  *  L  H  L  *  A  Y  S  S  R  N  C  W  V  H  R  S  C  S  G  D  L  F  I  S  Y  Y  S  C  *  L  W  G  F  K  S  S  P  L  S  W  Q  R  S  S  G  I  V  N  R  S  Q   : T  K  Q  R  R  *  V  C  Q  N  *  S  I  W  W  *  G  H  S  V  E  W  T  S  C  I  W  R  S  C  N  V  K  I  Y  W :   *  Q  I  F  E  T  M  D  N  T  *  T  R  S  Y  V  C  T  T  C  *  R  R  *  M  P  S  F  S  Q  *  R  F  V  G  C  D  D  E  *  R  S  L  *  N  G  *  T  A  N  S  A  V  A  Q  K  E  R  D  *  P  S  A  *  K  G  P  G  S  G  S  C  C  T  S  S  S  G  V  S  F  I  D  G  S  S  E  R  Q  Q  R  Q  Y  I  R  D  C  G  G  P  *  S  S  Q  E  V  Q  K  Q  K  L  E  M  T  C  S  L  H  L  V  *  Y  K  S  V  H  G  D  G  Y  K  S  H  Y  Y  I  T  Q  S  I  N  F  S  Y  G  L  K  V  C  V  *  E  *  Y  F  S  N  V  L  *  K  K  K  Q  L  T  N  D  V  Y  P  N  F  L  V  F  V  A  P  E  N  G  Y  V  N  *  A  C  C  S  K  Y  Q  K  C  N  F  L  L  L  P  F  E  Y  M </second_frame>
            <third_frame>   V  L  L  C  E  T  *  S  L  E  Q  F  V  A  G  S  A  A  R  T  N  A  V  D  S  I  A  Y  C  F  H  *  K  E  L  M  E  E  M  S  P  A  V  A  V  T  L  S  L  S  S  S  I  C  D  N  P  A  I  S  N  H  V  E  I  T  R  L  K  L  V  T  D  T  A  S  L  L  S  D  P  T  S  L  L  H  A  E  S  N  T  S  W  D  G  K  S  N  G  M  K  V  D  V  G  R  V  P  L  L  T  L  G  E  S  S  G  K  C  S  L  P  Q  T  V  L  G  A  E  N  G  L  I  V  S  D  S  I  I  Q  G  S  D  E  D  E  I  L  S  V  G  E  D  P  C  G  I  N  G  E  E  L  L  P  L  G  A  S  L  Q  L  S  L  P  I  A  V  E  I  E  G  I  D  N  G  Q  I  V  A  K  V  I  S  L  E  E  R  S  L  D  R  K  V  S  N  T  I  V  A  L  P  D  D  E  I  T  S  G  P  T  L  K  A  S  V  V  A  L  P  L  P  S  E  K  E  P  V  K  E  S  V  K  S  V  F  E  L  E  C  V  P  L  W  G  S  V  S  I  C  G  K  R  P  E  M  E  D  A  L  V  V  V  P  N  F  M  K  I  P  I  K  M  F  I  G  D  R  V  I  D  G  L  S  Q  S  L  S  H  L  T  S  H  F  Y  G  V  Y  D  G  H  G  G  S  Q  :  V  A  D  Y  C  R  K  R  V  H  L  A  L  V  E  E  L  K  L  P  K  H  D  L  V  D  G  S  V  R  D  T  R  Q  V  Q  W  E  K  V  F  T  N  C  F  L  K  V  D  D  E  V  G  G  K  V  I  D  L  C  D  D  N  I  N  A  S  S  C  T  S  E  P  I  A  P  E  T  V  G  S  T  A  V  V  A  V  I  C  S  S  H  I  I  V  A  N  C  G  D  S  R  A  V  L  Y  R  G  K  E  A  V  A  L  S  I  D  H  K  :  P  S  R  E  D  E  Y  A  R  I  E  A  S  G  G  K  V  I  Q  W  N  G  H  R  V  F  G  V  L  A  M  S  R  S  I   : G  D  R  Y  L  K  P  W  I  I  P  E  P  E  V  M  F  V  P  R  A  R  E  D  E  C  L  V  L  A  S  D  G  L  W  D  V  M  T  N  E  E  A  C  E  M  A  R  R  R  I  L  L  W  H  K  K  N  G  T  N  P  L  P  E  R  G  Q  G  V  D  L  A  A  Q  A  A  A  E  Y  L  S  S  M  A  L  Q  K  G  S  K  D  N  I  S  V  I  V  V  D  L  K  A  H  R  K  F  K  S  K  S  *  R  *  H  V  H  Y  I  W  F  S  I  N  L  Y  T  A  T  G  I  N  L  I  I  T  *  L  S  P  L  I  F  P  M  G  L  R  C  V  Y  E  N  S  I  L  A  M  Y  Y  R  R  K  N  S  *  Q  T  T  F  I  Q  I  F  W  C  L  L  R  Q  K  M  A  M  *  I  E  H  V  V  A  N  I  R  N  A  I  S  Y  F  F  R  S  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32890" stop="33735"/>
                    <exon start="34032" stop="34388"/>
                    <exon start="34536" stop="34641"/>
                    <exon start="36579" stop="36913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELMEEMSPAVAVTLSLSSSICDNPAISNHVEITRLKLVTDTASLLSDPTSLLHAESNTSWDGKSNGMKVDVGRVPLLTLGESSGKCSLPQTVLGAENGLIVSDSIIQGSDEDEILSVGEDPCGINGEELLPLGASLQLSLPIAVEIEGIDNGQIVAKVISLEERSLDRKVSNTIVALPDDEITSGPTLKASVVALPLPSEKEPVKESVKSVFELECVPLWGSVSICGKRPEMEDALVVVPNFMKIPIKMFIGDRVIDGLSQSLSHLTSHFYGVYDGHGGSQVADYCRKRVHLALVEELKLPKHDLVDGSVRDTRQVQWEKVFTNCFLKVDDEVGGKVIDLCDDNINASSCTSEPIAPETVGSTAVVAVICSSHIIVANCGDSRAVLYRGKEAVALSIDHKPSREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAREDECLVLASDGLWDVMTNEEACEMARRRILLWHKKNGTNPLPERGQGVDLAAQAAAEYLSSMALQKGSKDNISVIVVDLKAHRKFKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31924" e_stop="31984"/>
            <exon e_start="32817" e_stop="33735"/>
            <exon e_start="34032" e_stop="34388"/>
            <exon e_start="34536" e_stop="34641"/>
            <exon e_start="36579" e_stop="37194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.530" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.653" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31924" e_stop="31984" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.530" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31985" i_stop="32816" i_length="832"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32817" e_stop="33735" e_length="919"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="34032" e_stop="34388" e_length="357"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34536" e_stop="34641" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.653" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36579" e_stop="37194" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31924" stop="31984"/>
              <exon start="32817" stop="33321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33028" stop="33574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33116" stop="33536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33143" stop="33346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33144" stop="33735"/>
              <exon start="34032" stop="34086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33260" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33300" stop="33735"/>
              <exon start="34032" stop="34257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33313" stop="33735"/>
              <exon start="34032" stop="34109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33735"/>
              <exon start="34032" stop="34243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33469" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33545" stop="33735"/>
              <exon start="34032" stop="34312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33674" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="36797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34372" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="37171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34538" stop="34641"/>
              <exon start="36579" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34544" stop="34641"/>
              <exon start="36579" stop="37088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267017" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34574" stop="34641"/>
              <exon start="36579" stop="37082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36643" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414708" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="36960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36772" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36887" stop="37194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTG : CTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG : GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA : CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG : GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATG</gDNA_template>
            <first_frame> K  I  K  S  C  K  G  A  V  A  A  R  C  F  G  K  R  V  F  V   : A  W  N  N  L  L  L  V  V  L  H  G  L  T  R  L  T  Q  L  H  I  V  F  T  R  K  N  *  W  K  R  C  L  Q  L  L  L  L  H  S  A  *  A  A  L  S  V  I  T  L  Q  F  R  T  M  *  K  S  Q  G  S  N  *  *  L  T  Q  L  A  Y  F  Q  I  L  H  L  C  C  M  L  S  Q  I  P  V  G  M  E  K  A  T  V  *  K  L  M  L  V  E  F  P  C  *  P  *  E  K  A  L  E  N  V  V  C  R  R  L  Y  W  E  L  K  M  A  *  L  L  A  I  A  S  F  R  E  V  M  K  M  R  F  Y  L  L  E  R  I  H  V  E  L  M  A  R  S  C  C  H  W  A  L  A  C  S  *  A  C  Q  L  L  L  K  L  R  V  L  T  M  D  K  *  L  P  R  S  *  V  W  K  K  G  V  *  I  E  R  L  V  I  P  *  L  L  F  Q  M  M  K  L  L  V  A  L  H  L  R  H  L  *  W  P  F  H  C  P  V  R  R  S  L  S  K  K  V  S  R  V  C  L  N  W  N  V  C  H  S  G  V  L  Y  L  S  V  E  R  D  R  R  W  R  M  L  L  W  L  F  L  I  S  *  K  F  L  S  R  C  L  L  V  I  V  *  L  M  D  *  V  K  V  *  V  T  *  H  L  I  S  M  E  Y  M  M  V  M  E  D  L  R :   L  R  I  I  A  V  N  V  F  I  *  H  *  L  R  N  *  N  F  P  N  M  I  W  W  M  E  V  *  G  I  P  G  R  C  S  G  R  R  F  L  L  I  A  F  S  R  L  M  M  K  L  E  E  R  S  *  I  S  V  M  T  T  L  M  P  L  A  A  P  L  S  L  *  L  Q  K  L  L  G  P  P  Q  L  *  R  *  F  V  H  L  I  L  *  L  L  T  V  G  I  Q  E  Q  S  F  I  V  A  K  K  Q  W  H  C  Q  S  I  T  N :   Q  A  E  K  M  S  M  P  E  L  K  H  L  V  V  R  S  F  S  G  M  D  I  V  Y  L  A  F  L  Q  C  Q  D  L  L  :  V  T  D  I  *  N  H  G  *  Y  L  N  Q  K  L  C  L  Y  H  V  L  E  K  M  N  A  *  F  *  P  V  T  V  C  G  M  *  *  R  M  K  K  L  V  K  W  L  D  G  E  F  C  C  G  T  K  R  T  G  L  T  L  C  L  K  G  A  R  E  W  I  L  L  H  K  Q  Q  R  S  I  F  H  R  W  L  F  R  K  A  A  K  T  I  Y  P  *  L  W  W  T  L  K  L  T  G  S  S  K  A  K  V  R  D  D  M  F  T  T  F  G  L  V  *  I  C  T  R  R  R  V  *  I  S  L  L  H  N  S  V  H  *  F  F  L  W  A  *  G  V  C  M  R  I  V  F  *  Q  C  I  I  E  E  K  T  V  D  K  R  R  L  S  K  F  F  G  V  C  C  A  R  K  W  L  C  K  L  S  M  L  *  Q  I  S  E  M  Q  F  L  T  S  S  V  R  V  Y  </first_frame>
            <second_frame>  K  *  N  L  V  K  G  L  *  L  Q  G  V  L  V  K  G  F  L  L  :  L  G  T  I  C  C  W  *  C  C  T  D  *  R  G  *  L  N  C  I  L  F  S  L  E  R  I  N  G  R  D  V  S  S  C  C  C  Y  T  Q  L  K  Q  L  Y  L  *  *  P  C  N  F  E  P  C  R  N  H  K  A  Q  I  S  D  *  H  S  *  L  T  F  R  S  Y  I  F  V  A  C  *  V  K  Y  Q  L  G  W  K  K  Q  R  Y  E  S  *  C  W  *  S  S  L  V  D  P  R  R  K  L  W  K  M  *  S  A  A  D  C  I  G  S  *  K  W  P  D  C  *  R  *  H  H  S  G  K  *  *  R  *  D  F  I  C  W  R  G  S  M  W  N  *  W  R  G  V  V  A  T  G  R  *  L  A  V  E  L  A  N  C  C  *  N  *  G  Y  *  Q  W  T  N  S  C  Q  G  H  K  F  G  R  K  E  F  R  *  K  G  *  *  Y  H  S  C  S  S  R  *  *  N  Y  *  W  P  Y  T  *  G  I  C  S  G  P  S  I  A  Q  *  E  G  A  C  Q  R  K  C  Q  E  C  V  *  I  G  M  C  A  T  L  G  F  C  I  Y  L  W  K  E  T  G  D  G  G  C  S  C  G  C  S  *  F  H  E  N  S  Y  Q  D  V  Y  W  *  S  C  N  *  W  T  K  S  K  F  E  S  P  D  I  S  F  L  W  S  I  *  W  S  W  R  I  S   : G  C  G  L  L  P  *  T  C  S  S  S  I  S  *  G  I  K  T  S  Q  T  *  F  G  G  W  K  C  K  G  Y  P  A  G  A  V  G  E  G  F  Y  *  L  L  S  Q  G  *  *  *  S  W  R  K  G  H  R  S  L  *  *  Q  H  *  C  L  *  L  H  L  *  A  Y  S  S  R  N  C  W  V  H  R  S  C  S  G  D  L  F  I  S  Y  Y  S  C  *  L  W  G  F  K  S  S  P  L  S  W  Q  R  S  S  G  I  V  N  R  S  Q   : T  K  Q  R  R  *  V  C  Q  N  *  S  I  W  W  *  G  H  S  V  E  W  T  S  C  I  W  R  S  C  N  V  K  I  Y  W :   *  Q  I  F  E  T  M  D  N  T  *  T  R  S  Y  V  C  T  T  C  *  R  R  *  M  P  S  F  S  Q  *  R  F  V  G  C  D  D  E  *  R  S  L  *  N  G  *  T  A  N  S  A  V  A  Q  K  E  R  D  *  P  S  A  *  K  G  P  G  S  G  S  C  C  T  S  S  S  G  V  S  F  I  D  G  S  S  E  R  Q  Q  R  Q  Y  I  R  D  C  G  G  P  *  S  S  Q  E  V  Q  K  Q  K  L  E  M  T  C  S  L  H  L  V  *  Y  K  S  V  H  G  D  G  Y  K  S  H  Y  Y  I  T  Q  S  I  N  F  S  Y  G  L  K  V  C  V  *  E  *  Y  F  S  N  V  L  *  K  K  K  Q  L  T  N  D  V  Y  P  N  F  L  V  F  V  A  P  E  N  G  Y  V  N  *  A  C  C  S  K  Y  Q  K  C  N  F  L  L  L  P  F  E  Y  M </second_frame>
            <third_frame>   N  K  I  L  *  R  G  C  S  C  K  V  F  W  *  K  G  F  C  C :   L  E  Q  F  V  A  G  S  A  A  R  T  N  A  V  D  S  I  A  Y  C  F  H  *  K  E  L  M  E  E  M  S  P  A  V  A  V  T  L  S  L  S  S  S  I  C  D  N  P  A  I  S  N  H  V  E  I  T  R  L  K  L  V  T  D  T  A  S  L  L  S  D  P  T  S  L  L  H  A  E  S  N  T  S  W  D  G  K  S  N  G  M  K  V  D  V  G  R  V  P  L  L  T  L  G  E  S  S  G  K  C  S  L  P  Q  T  V  L  G  A  E  N  G  L  I  V  S  D  S  I  I  Q  G  S  D  E  D  E  I  L  S  V  G  E  D  P  C  G  I  N  G  E  E  L  L  P  L  G  A  S  L  Q  L  S  L  P  I  A  V  E  I  E  G  I  D  N  G  Q  I  V  A  K  V  I  S  L  E  E  R  S  L  D  R  K  V  S  N  T  I  V  A  L  P  D  D  E  I  T  S  G  P  T  L  K  A  S  V  V  A  L  P  L  P  S  E  K  E  P  V  K  E  S  V  K  S  V  F  E  L  E  C  V  P  L  W  G  S  V  S  I  C  G  K  R  P  E  M  E  D  A  L  V  V  V  P  N  F  M  K  I  P  I  K  M  F  I  G  D  R  V  I  D  G  L  S  Q  S  L  S  H  L  T  S  H  F  Y  G  V  Y  D  G  H  G  G  S  Q  :  V  A  D  Y  C  R  K  R  V  H  L  A  L  V  E  E  L  K  L  P  K  H  D  L  V  D  G  S  V  R  D  T  R  Q  V  Q  W  E  K  V  F  T  N  C  F  L  K  V  D  D  E  V  G  G  K  V  I  D  L  C  D  D  N  I  N  A  S  S  C  T  S  E  P  I  A  P  E  T  V  G  S  T  A  V  V  A  V  I  C  S  S  H  I  I  V  A  N  C  G  D  S  R  A  V  L  Y  R  G  K  E  A  V  A  L  S  I  D  H  K  :  P  S  R  E  D  E  Y  A  R  I  E  A  S  G  G  K  V  I  Q  W  N  G  H  R  V  F  G  V  L  A  M  S  R  S  I   : G  D  R  Y  L  K  P  W  I  I  P  E  P  E  V  M  F  V  P  R  A  R  E  D  E  C  L  V  L  A  S  D  G  L  W  D  V  M  T  N  E  E  A  C  E  M  A  R  R  R  I  L  L  W  H  K  K  N  G  T  N  P  L  P  E  R  G  Q  G  V  D  L  A  A  Q  A  A  A  E  Y  L  S  S  M  A  L  Q  K  G  S  K  D  N  I  S  V  I  V  V  D  L  K  A  H  R  K  F  K  S  K  S  *  R  *  H  V  H  Y  I  W  F  S  I  N  L  Y  T  A  T  G  I  N  L  I  I  T  *  L  S  P  L  I  F  P  M  G  L  R  C  V  Y  E  N  S  I  L  A  M  Y  Y  R  R  K  N  S  *  Q  T  T  F  I  Q  I  F  W  C  L  L  R  Q  K  M  A  M  *  I  E  H  V  V  A  N  I  R  N  A  I  S  Y  F  F  R  S  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32890" stop="33735"/>
                    <exon start="34032" stop="34388"/>
                    <exon start="34536" stop="34641"/>
                    <exon start="36579" stop="36913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELMEEMSPAVAVTLSLSSSICDNPAISNHVEITRLKLVTDTASLLSDPTSLLHAESNTSWDGKSNGMKVDVGRVPLLTLGESSGKCSLPQTVLGAENGLIVSDSIIQGSDEDEILSVGEDPCGINGEELLPLGASLQLSLPIAVEIEGIDNGQIVAKVISLEERSLDRKVSNTIVALPDDEITSGPTLKASVVALPLPSEKEPVKESVKSVFELECVPLWGSVSICGKRPEMEDALVVVPNFMKIPIKMFIGDRVIDGLSQSLSHLTSHFYGVYDGHGGSQVADYCRKRVHLALVEELKLPKHDLVDGSVRDTRQVQWEKVFTNCFLKVDDEVGGKVIDLCDDNINASSCTSEPIAPETVGSTAVVAVICSSHIIVANCGDSRAVLYRGKEAVALSIDHKPSREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAREDECLVLASDGLWDVMTNEEACEMARRRILLWHKKNGTNPLPERGQGVDLAAQAAAEYLSSMALQKGSKDNISVIVVDLKAHRKFKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34533" e_stop="34641"/>
            <exon e_start="36579" e_stop="37194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.653" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34533" e_stop="34641" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.653" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36579" e_stop="37194" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34533" stop="34641"/>
              <exon start="36579" stop="37144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426563" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34535" stop="34641"/>
              <exon start="36579" stop="37155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34538" stop="34641"/>
              <exon start="36579" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34544" stop="34641"/>
              <exon start="36579" stop="37088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267017" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34574" stop="34641"/>
              <exon start="36579" stop="37082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36643" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414708" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36649" stop="36960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36772" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36887" stop="37194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36891" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG : GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATG</gDNA_template>
            <first_frame> Q  P  S  R  E  D  E  Y  A  R  I  E  A  S  G  G  K  V  I  Q  W  N  G  H  R  V  F  G  V  L  A  M  S  R  S  I   : G  D  R  Y  L  K  P  W  I  I  P  E  P  E  V  M  F  V  P  R  A  R  E  D  E  C  L  V  L  A  S  D  G  L  W  D  V  M  T  N  E  E  A  C  E  M  A  R  R  R  I  L  L  W  H  K  K  N  G  T  N  P  L  P  E  R  G  Q  G  V  D  L  A  A  Q  A  A  A  E  Y  L  S  S  M  A  L  Q  K  G  S  K  D  N  I  S  V  I  V  V  D  L  K  A  H  R  K  F  K  S  K  S  *  R  *  H  V  H  Y  I  W  F  S  I  N  L  Y  T  A  T  G  I  N  L  I  I  T  *  L  S  P  L  I  F  P  M  G  L  R  C  V  Y  E  N  S  I  L  A  M  Y  Y  R  R  K  N  S  *  Q  T  T  F  I  Q  I  F  W  C  L  L  R  Q  K  M  A  M  *  I  E  H  V  V  A  N  I  R  N  A  I  S  Y  F  F  R  S  S  I   </first_frame>
            <second_frame>  S  Q  A  E  K  M  S  M  P  E  L  K  H  L  V  V  R  S  F  S  G  M  D  I  V  Y  L  A  F  L  Q  C  Q  D  L  L  :  V  T  D  I  *  N  H  G  *  Y  L  N  Q  K  L  C  L  Y  H  V  L  E  K  M  N  A  *  F  *  P  V  T  V  C  G  M  *  *  R  M  K  K  L  V  K  W  L  D  G  E  F  C  C  G  T  K  R  T  G  L  T  L  C  L  K  G  A  R  E  W  I  L  L  H  K  Q  Q  R  S  I  F  H  R  W  L  F  R  K  A  A  K  T  I  Y  P  *  L  W  W  T  L  K  L  T  G  S  S  K  A  K  V  R  D  D  M  F  T  T  F  G  L  V  *  I  C  T  R  R  R  V  *  I  S  L  L  H  N  S  V  H  *  F  F  L  W  A  *  G  V  C  M  R  I  V  F  *  Q  C  I  I  E  E  K  T  V  D  K  R  R  L  S  K  F  F  G  V  C  C  A  R  K  W  L  C  K  L  S  M  L  *  Q  I  S  E  M  Q  F  L  T  S  S  V  R  V  Y  </second_frame>
            <third_frame>   A  K  Q  R  R  *  V  C  Q  N  *  S  I  W  W  *  G  H  S  V  E  W  T  S  C  I  W  R  S  C  N  V  K  I  Y  W :   *  Q  I  F  E  T  M  D  N  T  *  T  R  S  Y  V  C  T  T  C  *  R  R  *  M  P  S  F  S  Q  *  R  F  V  G  C  D  D  E  *  R  S  L  *  N  G  *  T  A  N  S  A  V  A  Q  K  E  R  D  *  P  S  A  *  K  G  P  G  S  G  S  C  C  T  S  S  S  G  V  S  F  I  D  G  S  S  E  R  Q  Q  R  Q  Y  I  R  D  C  G  G  P  *  S  S  Q  E  V  Q  K  Q  K  L  E  M  T  C  S  L  H  L  V  *  Y  K  S  V  H  G  D  G  Y  K  S  H  Y  Y  I  T  Q  S  I  N  F  S  Y  G  L  K  V  C  V  *  E  *  Y  F  S  N  V  L  *  K  K  K  Q  L  T  N  D  V  Y  P  N  F  L  V  F  V  A  P  E  N  G  Y  V  N  *  A  C  C  S  K  Y  Q  K  C  N  F  L  L  L  P  F  E  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34533" stop="34641"/>
                    <exon start="36579" stop="36913"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPSREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAREDECLVLASDGLWDVMTNEEACEMARRRILLWHKKNGTNPLPERGQGVDLAAQAAAEYLSSMALQKGSKDNISVIVVDLKAHRKFKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="31909" e_stop="32758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="31909" e_stop="32758" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31909" stop="32746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31923" stop="32535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31923" stop="32279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32135" stop="32758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</gDNA_template>
            <first_frame> H  K  E  K  K  K  I  K  S  C  K  G  A  V  A  A  R  C  F  G  K  R  V  F  V  G  K  L  T  F  V  T  V  L  V  E  F  I  V  S  R  T  F  F  F  F  F  M  L  L  N  G  L  L  L  K  D  S  I  F  I  C  W  V  G  G  R  R  R  V  Y  L  V  N  D  L  Y  F  E  R  W  T  *  V  A  S  D  P  *  N  P  S  Y  M  W  Q  K  G  C  I  F  L  G  F  F  H  V  I  L  D  *  L  S  V  F  F  P  L  L  G  S  F  P  *  F  F  H  F  H  F  F  N  S  W  I  R  V  *  F  C  R  F  P  H  F  L  V  Y  L  R  V  G  G  G  G  A  K  I  C  S  S  *  S  C  F  F  S  *  R  E  R  Y  N  C  M  I  F  *  F  Q  V  Q  E  R  S  P  Q  L  F  S  V  *  D  V  P  S  T  D  L  F  I  A  T  D  L  L  H  T  L  V  S  L  T  Y  L  E  L  V  P  P  F  L  *  C  W  *  C  T  L  Y  F  *  *  *  A  V  D  *  D  L  L  A  S  F  N  F  Y  L  S  P  F  L  W  I  P  T  S  F  S  L  C  L  *  F  S  C  L  A  H  F  C  G  F  L  A  H  F  I  V  D  S  I  *  </first_frame>
            <second_frame>  T  K  K  K  R  K  *  N  L  V  K  G  L  *  L  Q  G  V  L  V  K  G  F  L  L  V  S  L  L  L  L  L  F  *  L  N  L  L  *  V  G  P  F  F  F  F  L  C  C  *  M  V  C  C  L  K  I  Q  F  L  S  V  G  L  E  E  E  E  E  Y  I  *  *  M  T  C  I  L  R  G  G  H  E  L  P  Q  I  H  E  T  Q  V  T  C  G  K  K  V  V  S  F  *  G  F  F  M  *  F  L  I  S  C  L  F  S  S  H  Y  *  V  L  F  H  D  S  F  T  F  T  S  S  I  H  G  *  G  F  D  F  V  V  F  P  I  F  L  C  I  *  G  L  V  V  V  E  L  R  F  A  L  L  S  P  V  S  S  L  E  E  R  D  I  I  A  *  F  F  S  S  R  Y  K  K  G  P  P  N  C  S  Q  S  R  T  C  H  L  Q  I  C  L  *  Q  Q  I  S  F  T  L  L  L  V  S  L  I  W  S  L  F  H  L  F  Y  D  V  G  S  V  P  F  T  S  S  S  E  L  L  T  E  I  Y  L  P  H  S  I  F  I  S  P  H  F  C  G  F  L  P  R  S  P  C  A  Y  N  L  A  V  L  H  I  F  V  D  S  *  L  I  S  L  W  I  Q  F  S </second_frame>
            <third_frame>   Q  R  K  K  E  N  K  I  L  *  R  G  C  S  C  K  V  F  W  *  K  G  F  C  W  *  A  Y  F  C  Y  C  F  S  *  I  Y  C  K  *  D  L  F  F  F  F  Y  V  V  E  W  F  V  A  *  R  F  N  F  Y  L  L  G  W  R  K  K  K  S  I  F  S  K  *  P  V  F  *  E  V  D  M  S  C  L  R  S  M  K  P  K  L  H  V  A  K  R  L  Y  L  F  R  V  F  S  C  D  S  *  L  V  V  C  F  L  P  I  T  R  F  F  S  M  I  L  S  L  S  L  L  Q  F  M  D  K  G  L  I  L  S  F  S  P  F  S  C  V  F  K  G  W  W  W  W  S  *  D  L  L  F  L  V  L  F  L  L  L  K  R  E  I  *  L  H  D  F  L  V  P  G  T  R  K  V  P  P  T  V  L  S  L  G  R  A  I  Y  R  S  V  Y  S  N  R  S  P  S  H  S  C  *  S  H  L  S  G  A  C  S  T  F  S  M  M  L  V  V  Y  P  L  L  L  V  V  S  C  *  L  R  S  T  C  L  I  Q  F  L  S  L  P  I  F  V  D  S  Y  L  V  L  P  V  L  I  I  *  L  S  C  T  F  L  W  I  P  S  S  F  H  C  G  F  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31909" stop="32157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKEKKKIKSCKGAVAARCFGKRVFVGKLTFVTVLVEFIVSRTFFFFFMLLNGLLLKDSIFICWVGGRRRVYLVNDLYFERWT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32513" stop="32731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQISFTLLLVSLIWSLFHLFYDVGSVPFTSSSELLTEIYLPHSIFISPHFCGFLPRSPCAYNLAVLHIFVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37121" PGL_stop="36881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37121" e_stop="36881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37121" e_stop="36881" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37121" stop="36881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTGGCGCAACAAACACCAAAAAATTTGGATAAACGTCGTTTGTCAACTGTTTTTTCTTCTATAATACATTGCTAAAATACTATTCTCATACACACACCTTAAGCCCATAGGAAAAATTAATGGACTGAGTTATGTAATAATGAGATTTATACCCGTCGCCGTGTACAGATTTATACTAAACCAAATGTAGTGAACATGTCATCTCTAACTTTTGCTTTTGAACTTCCTGTGAGCTTT</gDNA_template>
            <first_frame> F  S  G  A  T  N  T  K  K  F  G  *  T  S  F  V  N  C  F  F  F  Y  N  T  L  L  K  Y  Y  S  H  T  H  T  L  S  P  *  E  K  L  M  D  *  V  M  *  *  *  D  L  Y  P  S  P  C  T  D  L  Y  *  T  K  C  S  E  H  V  I  S  N  F  C  F  *  T  S  C  E  L  </first_frame>
            <second_frame>  F  L  A  Q  Q  T  P  K  N  L  D  K  R  R  L  S  T  V  F  S  S  I  I  H  C  *  N  T  I  L  I  H  T  P  *  A  H  R  K  N  *  W  T  E  L  C  N  N  E  I  Y  T  R  R  R  V  Q  I  Y  T  K  P  N  V  V  N  M  S  S  L  T  F  A  F  E  L  P  V  S  F </second_frame>
            <third_frame>   F  W  R  N  K  H  Q  K  I  W  I  N  V  V  C  Q  L  F  F  L  L  *  Y  I  A  K  I  L  F  S  Y  T  H  L  K  P  I  G  K  I  N  G  L  S  Y  V  I  M  R  F  I  P  V  A  V  Y  R  F  I  L  N  Q  M  *  *  T  C  H  L  *  L  L  L  L  N  F  L  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0142A05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="39673" PGL_stop="40147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39673" e_stop="40147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39673" e_stop="40147" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39673" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39673" stop="40005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</gDNA_template>
            <first_frame> K  S  A  K  P  K  S  L  N  K  Q  N  Y  K  V  S  K  R  A  P  F  S  L  N  Q  W  Q  M  M  G  K  I  *  P  H  F  G  Y  K  T  P  P  I  S  A  V  L  R  G  Y  A  T  G  C  R  L  S  S  L  T  Q  D  C  C  S  L  F  C  C  W  *  R  R  S  S  L  Q  F  L  *  F  L  Q  H  Y  L  C  L  N  Q  P  M  *  R  K  A  G  I  L  L  M  *  C  W  F  *  L  L  *  F  L  V  F  S  A  E  T  T  M  K  I  K  I  S  I  N  I  N  E  Q  L  L  R  L  T  E  I  K  F  R  N  R  I  H  Q  H  Q  I  V  D  G  L  V  K  F  E  I  R  </first_frame>
            <second_frame>  K  V  P  N  P  S  L  *  T  S  K  I  T  K  C  P  K  E  L  L  L  A  *  I  N  G  R  *  W  G  R  Y  D  P  I  L  A  T  K  H  H  Q  S  P  P  Y  *  E  A  T  P  P  G  V  V  S  L  L  *  R  R  T  V  A  H  Y  S  V  V  G  D  G  D  L  L  C  S  F  C  S  S  F  N  T  I  Y  V  *  T  N  Q  C  K  E  K  L  G  F  C  *  C  S  V  G  S  S  C  C  D  F  W  F  S  Q  Q  K  Q  Q  *  R  *  K  S  Q  S  I  S  T  N  S  F  S  D  *  Q  K  S  S  S  E  I  E  S  I  N  T  K  *  *  M  V  *  *  S  S  K  S  E </second_frame>
            <third_frame>   K  C  Q  T  Q  V  F  K  Q  A  K  L  Q  S  V  Q  K  S  S  F  *  P  K  S  M  A  D  D  G  E  D  M  T  P  F  W  L  Q  N  T  T  N  L  R  R  T  E  R  L  R  H  R  V  S  S  L  F  F  N  A  G  L  L  L  I  I  L  L  L  V  T  A  I  F  F  A  V  F  V  V  P  S  T  L  S  M  F  K  P  T  N  V  K  K  S  W  D  S  V  N  V  V  L  V  L  V  A  V  I  F  G  F  L  S  R  N  N  N  E  D  K  N  L  N  Q  Y  Q  R  T  A  S  P  I  N  R  N  Q  V  Q  K  S  N  P  S  T  P  N  S  R  W  F  S  E  V  R  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39738" stop="40145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSMADDGEDMTPFWLQNTTNLRRTERLRHRVSSLFFNAGLLLIILLLVTAIFFAVFVVPSTLSMFKPTNVKKSWDSVNVVLVLVAVIFGFLSRNNNEDKNLNQYQRTASPINRNQVQKSNPSTPNSRWFSEVRNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40570" PGL_stop="41473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40570" e_stop="41473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="40570" e_stop="41473" e_length="904"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40570" stop="41450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40813" stop="41473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAGAAGGAGAGAGCAAGTAAAAAGAGGGAAAATCATGAGCGAGAAGCAACTAAAATTATTATGGCACCGGCGACGCTTCCTCCTCCACCACCACCTCCGCCACCGCCGCCTCCATTACCACAATATGTGGAGCCGAGGAGCAGCAAAAGTGATCGGAAAAGAGGTGGTGCAAGTGCGACGAAGGAGTTTATAAACTCTTTATATCACAAAAAGAAGAGAAAGAACAGATCAAAAAGTGTTGATAATTTTGATGCTCTTCTCTACAAATCAGAACCACCTCCTCTCCATTACCAACGGCCGGCATCCTCCACTCCACCACCACCACCTCCTCCGCCACCGCCACCACCTTCTTCTCTGTTTCAAAACTTATTCACATCCAAAAAGGCCAGAAGAAAGAGAAATGCACCTCCACCACCGCCACCACCTCCTCCGCCAGTCAAGGCAGTACCGGTCAGGATATCAAGACCAAATACCCCTTTCACCAGAACTCCAGCACCAAAGCCAGTGAAAATAAGAAGCTTCGACAGTGTCGAAGAAAACCCAAACAGCGGAGGAGAATCGCCGTTGATACCAATTCCACCACCACCTCCACCACCCCCATTCTTCAGAAAACACGCCTGGAAATTCGTAGTACAAGGCGACTACTTGAGAATAGACAGCACCCTCAGCTCACGTTCTGGGTCTCCTGAACTTGAAGATATAGATTCAGCCGAAAACACCCCGATGGCAGAAGACGCCGGCGCTGGTGAAGGGATGGCGTTTGCTCCGTCACCATTGTTTTGTCCAAGCCCAGATGTAAACACAAAAGCTGAAAACTTCATATCAAAATTTAGAGCTGGATTAAAGCTAGAAAAAATCAATTCCTTCAACAAAAATGATCTAGGACGAAGCTTATCAAATCT</gDNA_template>
            <first_frame> V  R  R  R  E  Q  V  K  R  G  K  I  M  S  E  K  Q  L  K  L  L  W  H  R  R  R  F  L  L  H  H  H  L  R  H  R  R  L  H  Y  H  N  M  W  S  R  G  A  A  K  V  I  G  K  E  V  V  Q  V  R  R  R  S  L  *  T  L  Y  I  T  K  R  R  E  R  T  D  Q  K  V  L  I  I  L  M  L  F  S  T  N  Q  N  H  L  L  S  I  T  N  G  R  H  P  P  L  H  H  H  H  L  L  R  H  R  H  H  L  L  L  C  F  K  T  Y  S  H  P  K  R  P  E  E  R  E  M  H  L  H  H  R  H  H  L  L  R  Q  S  R  Q  Y  R  S  G  Y  Q  D  Q  I  P  L  S  P  E  L  Q  H  Q  S  Q  *  K  *  E  A  S  T  V  S  K  K  T  Q  T  A  E  E  N  R  R  *  Y  Q  F  H  H  H  L  H  H  P  H  S  S  E  N  T  P  G  N  S  *  Y  K  A  T  T  *  E  *  T  A  P  S  A  H  V  L  G  L  L  N  L  K  I  *  I  Q  P  K  T  P  R  W  Q  K  T  P  A  L  V  K  G  W  R  L  L  R  H  H  C  F  V  Q  A  Q  M  *  T  Q  K  L  K  T  S  Y  Q  N  L  E  L  D  *  S  *  K  K  S  I  P  S  T  K  M  I  *  D  E  A  Y  Q  I  </first_frame>
            <second_frame>  *  E  G  E  S  K  *  K  E  G  K  S  *  A  R  S  N  *  N  Y  Y  G  T  G  D  A  S  S  S  T  T  T  S  A  T  A  A  S  I  T  T  I  C  G  A  E  E  Q  Q  K  *  S  E  K  R  W  C  K  C  D  E  G  V  Y  K  L  F  I  S  Q  K  E  E  K  E  Q  I  K  K  C  *  *  F  *  C  S  S  L  Q  I  R  T  T  S  S  P  L  P  T  A  G  I  L  H  S  T  T  T  T  S  S  A  T  A  T  T  F  F  S  V  S  K  L  I  H  I  Q  K  G  Q  K  K  E  K  C  T  S  T  T  A  T  T  S  S  A  S  Q  G  S  T  G  Q  D  I  K  T  K  Y  P  F  H  Q  N  S  S  T  K  A  S  E  N  K  K  L  R  Q  C  R  R  K  P  K  Q  R  R  R  I  A  V  D  T  N  S  T  T  T  S  T  T  P  I  L  Q  K  T  R  L  E  I  R  S  T  R  R  L  L  E  N  R  Q  H  P  Q  L  T  F  W  V  S  *  T  *  R  Y  R  F  S  R  K  H  P  D  G  R  R  R  R  R  W  *  R  D  G  V  C  S  V  T  I  V  L  S  K  P  R  C  K  H  K  S  *  K  L  H  I  K  I  *  S  W  I  K  A  R  K  N  Q  F  L  Q  Q  K  *  S  R  T  K  L  I  K  S </second_frame>
            <third_frame>   K  K  E  R  A  S  K  K  R  E  N  H  E  R  E  A  T  K  I  I  M  A  P  A  T  L  P  P  P  P  P  P  P  P  P  P  P  P  L  P  Q  Y  V  E  P  R  S  S  K  S  D  R  K  R  G  G  A  S  A  T  K  E  F  I  N  S  L  Y  H  K  K  K  R  K  N  R  S  K  S  V  D  N  F  D  A  L  L  Y  K  S  E  P  P  P  L  H  Y  Q  R  P  A  S  S  T  P  P  P  P  P  P  P  P  P  P  P  P  S  S  L  F  Q  N  L  F  T  S  K  K  A  R  R  K  R  N  A  P  P  P  P  P  P  P  P  P  P  V  K  A  V  P  V  R  I  S  R  P  N  T  P  F  T  R  T  P  A  P  K  P  V  K  I  R  S  F  D  S  V  E  E  N  P  N  S  G  G  E  S  P  L  I  P  I  P  P  P  P  P  P  P  P  F  F  R  K  H  A  W  K  F  V  V  Q  G  D  Y  L  R  I  D  S  T  L  S  S  R  S  G  S  P  E  L  E  D  I  D  S  A  E  N  T  P  M  A  E  D  A  G  A  G  E  G  M  A  F  A  P  S  P  L  F  C  P  S  P  D  V  N  T  K  A  E  N  F  I  S  K  F  R  A  G  L  K  L  E  K  I  N  S  F  N  K  N  D  L  G  R  S  L  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40572" stop="41471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKERASKKRENHEREATKIIMAPATLPPPPPPPPPPPPLPQYVEPRSSKSDRKRGGASATKEFINSLYHKKKRKNRSKSVDNFDALLYKSEPPPLHYQRPASSTPPPPPPPPPPPPSSLFQNLFTSKKARRKRNAPPPPPPPPPPVKAVPVRISRPNTPFTRTPAPKPVKIRSFDSVEENPNSGGESPLIPIPPPPPPPPFFRKHAWKFVVQGDYLRIDSTLSSRSGSPELEDIDSAENTPMAEDAGAGEGMAFAPSPLFCPSPDVNTKAENFISKFRAGLKLEKINSFNKNDLGRSLSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="41753" PGL_stop="41179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41753" e_stop="41179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="41753" e_stop="41179" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="41179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="41179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41752" stop="41258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTC</gDNA_template>
            <first_frame> I  D  Y  S  K  S  H  F  F  H  N  L  G  *  S  S  T  T  *  P  T  Y  Q  L  Q  Q  R  N  T  K  L  T  N  V  Q  S  I  A  E  A  *  V  T  Y  D  S  F  F  F  F  K  Q  S  L  Y  F  L  Y  T  N  N  N  S  N  L  K  *  *  T  K  K  M  T  T  L  T  N  Q  S  M  W  *  E  K  N  L  T  V  A  Y  S  W  A  E  I  *  *  A  S  S  *  I  I  F  V  E  G  I  D  F  F  *  L  *  S  S  S  K  F  *  Y  E  V  F  S  F  C  V  Y  I  W  A  W  T  K  Q  W  *  R  S  K  R  H  P  F  T  S  A  G  V  F  C  H  R  G  V  F  G  *  I  Y  I  F  K  F  R  R  P  R  T  *  A  E  G  A  V  Y  S  Q  V  V  A  L  Y  Y  E  F  P  G  V  F   </first_frame>
            <second_frame>  S  I  I  Q  N  H  T  S  F  I  T  *  A  S  Q  V  L  H  D  Q  L  I  N  C  N  K  E  T  Q  N  *  Q  M  F  N  P  *  R  K  L  K  *  P  M  I  V  F  F  F  L  N  N  L  S  I  F  C  T  L  I  I  T  Q  I  S  N  D  E  Q  K  K  *  Q  L  *  Q  I  N  Q  C  G  K  K  R  I  *  L  W  P  T  P  G  P  R  F  D  K  L  R  P  R  S  F  L  L  K  E  L  I  F  S  S  F  N  P  A  L  N  F  D  M  K  F  S  A  F  V  F  T  S  G  L  G  Q  N  N  G  D  G  A  N  A  I  P  S  P  A  P  A  S  S  A  I  G  V  F  S  A  E  S  I  S  S  S  S  G  D  P  E  R  E  L  R  V  L  S  I  L  K  *  S  P  C  T  T  N  F  Q  A  C  F  </second_frame>
            <third_frame>   R  L  F  K  I  T  L  L  S  *  L  R  L  V  K  Y  Y  M  T  N  L  S  T  A  T  K  K  H  K  I  N  K  C  S  I  H  S  G  S  L  S  D  L  *  *  F  F  F  F  *  T  I  S  L  F  S  V  H  *  *  *  L  K  S  Q  M  M  N  K  K  N  D  N  F  N  K  S  I  N  V  V  R  K  E  S  N  C  G  L  L  L  G  R  D  L  I  S  F  V  L  D  H  F  C  *  R  N  *  F  F  L  A  L  I  Q  L  *  I  L  I  *  S  F  Q  L  L  C  L  H  L  G  L  D  K  T  M  V  T  E  Q  T  P  S  L  H  Q  R  R  R  L  L  P  S  G  C  F  R  L  N  L  Y  L  Q  V  Q  E  T  Q  N  V  S  *  G  C  C  L  F  S  S  S  R  L  V  L  R  I  S  R  R  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41494" stop="41213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWPTPGPRFDKLRPRSFLLKELIFSSFNPALNFDMKFSAFVFTSGLGQNNGDGANAIPSPAPASSAIGVFSAESISSSSGDPERELRVLSILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="43604" PGL_stop="42845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43604" e_stop="43103"/>
            <exon e_start="42854" e_stop="42845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43604" e_stop="43103" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="43102" i_stop="42855" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="42854" e_stop="42845" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43604" stop="43111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43603" stop="43105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43603" stop="43111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43603" stop="43115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43601" stop="43105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43591" stop="43202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43590" stop="43191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43586" stop="43105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43577" stop="43417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43543" stop="43103"/>
              <exon start="42854" stop="42845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAAGAAATAGAGATGGAGCATTATAACTTTGCCCAAAAGATCATGACATTGGCTTTGTTTGCCATAGTGTTAAGTAGTGTTAATATAGAGGTGGTGCGGGCACAAGGAATATGCAACGTGTCTGGTGAAGGATTAATGTCATGCAGACCATCAATCACGCCACCTTATCCGACAGCACCTACAGCACAGTGCTGTAACGCGCTGTCTCGTGCAGACATGGCCTGCCTTTGCTCTTACAAAAATTCCCAGTTATTGCCTTCTCTTGGAATCGATCCTAACCTCGCAATTCAGCTCCCTCAGAAATGCAGACTACCTAATCCTCCCCGTTGCTAAATTAAAGATGAGTAATTAAAAGTTGAAAGCGTTTGTTACTTGAATAAGCCTCGTTATGAAAATTGACGCTTTCTAAGCTCTCACTTTCCTATACTTGTATCACCGTGTGTTATGTGTACTTCGAGCTTTATTGTTTTTACTTAATAATTCAGTGGTTTGTTATTGT : TGATATAATA</gDNA_template>
            <first_frame> D  K  E  I  E  M  E  H  Y  N  F  A  Q  K  I  M  T  L  A  L  F  A  I  V  L  S  S  V  N  I  E  V  V  R  A  Q  G  I  C  N  V  S  G  E  G  L  M  S  C  R  P  S  I  T  P  P  Y  P  T  A  P  T  A  Q  C  C  N  A  L  S  R  A  D  M  A  C  L  C  S  Y  K  N  S  Q  L  L  P  S  L  G  I  D  P  N  L  A  I  Q  L  P  Q  K  C  R  L  P  N  P  P  R  C  *  I  K  D  E  *  L  K  V  E  S  V  C  Y  L  N  K  P  R  Y  E  N  *  R  F  L  S  S  H  F  P  I  L  V  S  P  C  V  M  C  T  S  S  F  I  V  F  T  *  *  F  S  G  L  L  L   : L  I  *   </first_frame>
            <second_frame>  T  K  K  *  R  W  S  I  I  T  L  P  K  R  S  *  H  W  L  C  L  P  *  C  *  V  V  L  I  *  R  W  C  G  H  K  E  Y  A  T  C  L  V  K  D  *  C  H  A  D  H  Q  S  R  H  L  I  R  Q  H  L  Q  H  S  A  V  T  R  C  L  V  Q  T  W  P  A  F  A  L  T  K  I  P  S  Y  C  L  L  L  E  S  I  L  T  S  Q  F  S  S  L  R  N  A  D  Y  L  I  L  P  V  A  K  L  K  M  S  N  *  K  L  K  A  F  V  T  *  I  S  L  V  M  K  I  D  A  F  *  A  L  T  F  L  Y  L  Y  H  R  V  L  C  V  L  R  A  L  L  F  L  L  N  N  S  V  V  C  Y  C  :  *  Y  N  </second_frame>
            <third_frame>   Q  R  N  R  D  G  A  L  *  L  C  P  K  D  H  D  I  G  F  V  C  H  S  V  K  *  C  *  Y  R  G  G  A  G  T  R  N  M  Q  R  V  W  *  R  I  N  V  M  Q  T  I  N  H  A  T  L  S  D  S  T  Y  S  T  V  L  *  R  A  V  S  C  R  H  G  L  P  L  L  L  Q  K  F  P  V  I  A  F  S  W  N  R  S  *  P  R  N  S  A  P  S  E  M  Q  T  T  *  S  S  P  L  L  N  *  R  *  V  I  K  S  *  K  R  L  L  L  E  *  A  S  L  *  K  L  T  L  S  K  L  S  L  S  Y  T  C  I  T  V  C  Y  V  Y  F  E  L  Y  C  F  Y  L  I  I  Q  W  F  V  I  V :   D  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43604" stop="43269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEIEMEHYNFAQKIMTLALFAIVLSSVNIEVVRAQGICNVSGEGLMSCRPSITPPYPTAPTAQCCNALSRADMACLCSYKNSQLLPSLGIDPNLAIQLPQKCRLPNPPRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="45899" PGL_stop="46535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45899" e_stop="46535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="45899" e_stop="46535" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45899" stop="46535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAATTTCTAGCTGCAGTATCCGAAGTGAATTCTCTTTAAGGTCATATAATTTAACAAAACAGGTCAAATTAAGGCAGTTTCCATTGTGATGCACCAAAGCAATGCTACAAAAAGCAGACTGTTACAAAAAACAGAGTTCCATAAAAGGACTCGAGTTCGTAGTACTCTCAAAAGTAATGTAGAGCCTTTCTCTCCCCAACTCTGCCAACAACAAAATCACCATCTGGTCATTTCTATACGGCAAATTAATGGCGATAAATGACCATATGCTGACAAAAGGAGTACATATTACAAACTTACTATGTTTAAAACTGACAACACATCATAGCTTGGAATTTTGGCTCAACAAATAGCTCTTCAGAACATCCATAACTGATCCAAAATCTGCTTTCACTTCCACAGGTGGGTTAGAAAACCGACATTCCATGTCTTTTATTTCCTTTGAGTGGTAATCAATCTTGGATTGAGTAAACTTCAATCCATGAGCTGTACTCACAACCACAGTCCTATCAGTTGGTGCAATGACTCCACTGTTTCTCAGCTTGAACAGCGCAGTCAATGCCACACCAGTATGCGGGCAAATGAACATCCCAGTGGAGTCTGCCTGAGCCATAGCATCCATCAACTCCTCCTC</gDNA_template>
            <first_frame> N  K  F  L  A  A  V  S  E  V  N  S  L  *  G  H  I  I  *  Q  N  R  S  N  *  G  S  F  H  C  D  A  P  K  Q  C  Y  K  K  Q  T  V  T  K  N  R  V  P  *  K  D  S  S  S  *  Y  S  Q  K  *  C  R  A  F  L  S  P  T  L  P  T  T  K  S  P  S  G  H  F  Y  T  A  N  *  W  R  *  M  T  I  C  *  Q  K  E  Y  I  L  Q  T  Y  Y  V  *  N  *  Q  H  I  I  A  W  N  F  G  S  T  N  S  S  S  E  H  P  *  L  I  Q  N  L  L  S  L  P  Q  V  G  *  K  T  D  I  P  C  L  L  F  P  L  S  G  N  Q  S  W  I  E  *  T  S  I  H  E  L  Y  S  Q  P  Q  S  Y  Q  L  V  Q  *  L  H  C  F  S  A  *  T  A  Q  S  M  P  H  Q  Y  A  G  K  *  T  S  Q  W  S  L  P  E  P  *  H  P  S  T  P  P  </first_frame>
            <second_frame>  T  N  F  *  L  Q  Y  P  K  *  I  L  F  K  V  I  *  F  N  K  T  G  Q  I  K  A  V  S  I  V  M  H  Q  S  N  A  T  K  S  R  L  L  Q  K  T  E  F  H  K  R  T  R  V  R  S  T  L  K  S  N  V  E  P  F  S  P  Q  L  C  Q  Q  Q  N  H  H  L  V  I  S  I  R  Q  I  N  G  D  K  *  P  Y  A  D  K  R  S  T  Y  Y  K  L  T  M  F  K  T  D  N  T  S  *  L  G  I  L  A  Q  Q  I  A  L  Q  N  I  H  N  *  S  K  I  C  F  H  F  H  R  W  V  R  K  P  T  F  H  V  F  Y  F  L  *  V  V  I  N  L  G  L  S  K  L  Q  S  M  S  C  T  H  N  H  S  P  I  S  W  C  N  D  S  T  V  S  Q  L  E  Q  R  S  Q  C  H  T  S  M  R  A  N  E  H  P  S  G  V  C  L  S  H  S  I  H  Q  L  L  L </second_frame>
            <third_frame>   Q  I  S  S  C  S  I  R  S  E  F  S  L  R  S  Y  N  L  T  K  Q  V  K  L  R  Q  F  P  L  *  C  T  K  A  M  L  Q  K  A  D  C  Y  K  K  Q  S  S  I  K  G  L  E  F  V  V  L  S  K  V  M  *  S  L  S  L  P  N  S  A  N  N  K  I  T  I  W  S  F  L  Y  G  K  L  M  A  I  N  D  H  M  L  T  K  G  V  H  I  T  N  L  L  C  L  K  L  T  T  H  H  S  L  E  F  W  L  N  K  *  L  F  R  T  S  I  T  D  P  K  S  A  F  T  S  T  G  G  L  E  N  R  H  S  M  S  F  I  S  F  E  W  *  S  I  L  D  *  V  N  F  N  P  *  A  V  L  T  T  T  V  L  S  V  G  A  M  T  P  L  F  L  S  L  N  S  A  V  N  A  T  P  V  C  G  Q  M  N  I  P  V  E  S  A  *  A  I  A  S  I  N  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45951" stop="46163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNKTGQIKAVSIVMHQSNATKSRLLQKTEFHKRTRVRSTLKSNVEPFSPQLCQQQNHHLVISIRQINGDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="47813" PGL_stop="45932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47813" e_stop="45932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="47813" e_stop="45932" e_length="1882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47813" stop="46963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47809" stop="47203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47809" stop="47308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47807" stop="47143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47806" stop="47112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47805" stop="47278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47804" stop="47498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47802" stop="47128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47802" stop="47159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47796" stop="47247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47794" stop="47179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47794" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47793" stop="47124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47793" stop="47318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47791" stop="47153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47791" stop="47318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47787" stop="47447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47783" stop="46963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47782" stop="47321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47780" stop="47213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47779" stop="47310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47777" stop="47129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47773" stop="47208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47773" stop="47334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47771" stop="47183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47771" stop="47204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47768" stop="47162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47747" stop="47006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47728" stop="47182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47713" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47586" stop="47067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47572" stop="46926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47542" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47415" stop="46958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="46616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47058" stop="46379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46870" stop="46337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46788" stop="45971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46765" stop="46166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46641" stop="45932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="45965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46593" stop="46021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46427" stop="45932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467680" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46254" stop="46025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</gDNA_template>
            <first_frame> A  S  S  Q  L  H  N  H  T  T  M  A  A  S  C  M  L  R  S  S  F  L  S  P  G  L  P  Q  L  H  H  Q  S  T  S  K  P  N  N  G  I  H  F  F  A  P  I  K  A  T  A  T  N  D  A  I  S  Q  Q  K  H  R  R  P  A  D  E  N  I  R  E  E  A  R  R  H  C  S  S  H  N  F  S  A  R  Y  V  P  F  N  A  G  P  T  S  D  E  W  Y  S  L  D  E  I  V  Y  R  S  R  S  G  G  L  L  D  V  Q  H  D  M  D  A  L  K  K  F  D  G  Q  Y  W  R  S  L  F  D  S  R  V  G  K  T  T  W  P  Y  G  S  G  V  W  S  K  K  E  W  V  L  P  E  I  D  S  D  D  I  V  S  A  F  E  G  N  S  N  L  F  W  A  E  R  F  G  K  Q  F  L  G  M  T  D  L  W  V  K  H  C  G  I  S  H  T  G  S  F  K  D  L  G  M  T  V  L  V  S  Q  V  N  R  L  R  K  M  H  K  P  V  V  G  V  G  C  A  S  T  G  D  T  S  A  A  L  S  A  Y  C  A  S  A  G  I  P  S  I  V  F  L  P  A  N  K  I  S  M  A  Q  L  V  Q  P  I  A  N  G  A  F  V  L  S  I  D  T  D  F  D  G  C  M  Q  L  I  R  E  V  T  A  E  L  P  I  Y  L  A  N  S  L  N  S  L  R  L  E  G  Q  K  T  A  A  I  E  I  L  Q  Q  F  D  W  E  V  P  E  W  V  I  V  P  G  G  N  L  G  N  I  Y  A  F  Y  K  G  F  Q  M  C  K  E  L  G  L  V  D  R  I  P  R  L  V  C  A  Q  A  A  N  A  N  P  L  Y  L  H  Y  K  S  G  W  K  D  F  K  P  V  K  A  N  T  T  F  A  S  A  I  Q  I  G  D  P  V  S  I  D  R  A  V  F  A  L  Q  N  C  N  G  I  V  E  E  A  T  E  E  E  L  M  D  A  M  A  Q  A  D  S  T  G  M  F  I  C  P  H  T  G  V  A  L  T  A  L  F  K  L  R  N  S  G  V  I  A  P  T  D  R  T  V  V  V  S  T  A  H  G  L  K  F  T  Q  S  K  I  D  Y  H  S  K  E  I  K  D  M  E  C  R  F  S  N  P  P  V  E  V  K  A  D  F  G  S  V  M  D  V  L  K  S  Y  L  L  S  Q  N  S  K  L  *  C  V  V  S  F  K  H  S  K  F  V  I  C  T  P  F  V  S  I  W  S  F  I  A  I  N  L  P  Y  R  N  D  Q  M  V  I  L  L  L  A  E  L  G  R  E  R  L  Y  I  T  F  E  S  T  T  N  S  S  P  F  M  E  L  C  F  L  *  Q  S  A  F  C  S  I  A  L  V  H  H  N  G  N  C  L  N  L  T  C  F  V  K  L  Y  D  L  K  E  </first_frame>
            <second_frame>  R  L  L  S  F  T  I  T  Q  Q  W  R  L  L  A  C  L  D  P  L  S  S  L  L  V  F  L  N  F  I  I  N  Q  L  Q  N  P  I  M  V  F  I  S  S  L  R  L  K  L  Q  P  Q  T  M  R  F  L  N  R  S  T  D  V  L  L  T  R  T  S  V  K  K  R  A  V  T  A  H  L  I  I  F  Q  P  G  M  F  L  L  M  L  V  L  L  L  M  N  G  I  L  *  M  R  L  F  I  G  V  G  L  V  D  Y  L  M  F  S  M  I  W  M  P  *  R  S  L  M  V  S  I  G  D  P  C  L  I  L  V  S  V  R  P  L  G  L  M  G  P  V  F  G  L  R  R  N  G  F  C  L  K  L  I  V  M  I  L  L  V  L  L  K  G  T  R  I  C  F  G  L  S  V  L  A  N  S  F  *  A  *  L  I  C  G  S  N  T  V  G  L  A  I  L  V  V  L  R  I  L  G  *  L  F  W  *  V  K  L  I  G  C  A  K  C  I  N  R  S  S  V  W  G  V  L  L  L  E  T  H  L  R  P  C  R  L  T  V  H  L  Q  A  F  H  Q  L  Y  F  Y  L  R  I  R  F  L  W  R  N  W  F  N  L  L  Q  M  G  L  L  C  *  V  L  T  L  I  L  M  V  V  C  S  *  F  V  K  L  L  L  S  C  L  F  T  W  Q  I  R  *  I  V  *  G  W  K  G  K  R  R  Q  Q  S  R  F  Y  S  S  L  I  G  K  F  R  S  G  L  *  F  L  V  G  T  *  A  T  Y  M  H  F  I  K  V  F  R  C  A  K  S  W  D  L  W  I  A  S  L  G  L  F  V  L  K  L  P  T  L  I  R  S  T  C  I  T  N  L  V  G  K  T  S  N  L  *  R  R  T  Q  H  L  H  L  L  Y  R  L  V  T  Q  C  L  *  T  E  L  F  L  P  C  R  T  A  T  G  *  L  R  R  P  P  R  R  S  *  W  M  L  W  L  R  Q  T  P  L  G  C  S  F  A  R  I  L  V  W  H  *  L  R  C  S  S  *  E  T  V  E  S  L  H  Q  L  I  G  L  W  L  *  V  Q  L  M  D  *  S  L  L  N  P  R  L  I  T  T  Q  R  K  *  K  T  W  N  V  G  F  L  T  H  L  W  K  *  K  Q  I  L  D  Q  L  W  M  F  *  R  A  I  C  *  A  K  I  P  S  Y  D  V  L  S  V  L  N  I  V  S  L  *  Y  V  L  L  L  S  A  Y  G  H  L  S  P  L  I  C  R  I  E  M  T  R  W  *  F  C  C  W  Q  S  W  G  E  K  G  S  T  L  L  L  R  V  L  R  T  R  V  L  L  W  N  S  V  F  C  N  S  L  L  F  V  A  L  L  W  C  I  T  M  E  T  A  L  I  *  P  V  L  L  N  Y  M  T  L  K  R </second_frame>
            <third_frame>   V  F  S  A  S  Q  S  H  N  N  G  G  F  L  H  A  *  I  L  F  P  L  S  W  S  S  S  T  S  S  S  I  N  F  K  T  Q  *  W  Y  S  F  L  R  S  D  *  S  Y  S  H  K  R  C  D  F  S  T  E  A  P  T  S  C  *  R  E  H  P  *  R  S  A  P  S  L  L  I  S  *  F  F  S  Q  V  C  S  F  *  C  W  S  Y  F  *  *  M  V  F  S  R  *  D  C  L  S  E  S  V  W  W  I  T  *  C  S  A  *  Y  G  C  L  K  E  V  *  W  S  V  L  A  I  L  V  *  F  S  C  R  *  D  H  L  A  L  W  V  R  C  L  V  *  E  G  M  G  S  A  *  N  *  *  *  *  Y  C  *  C  F  *  R  E  L  E  S  V  L  G  *  A  F  W  Q  T  V  S  R  H  D  *  F  V  G  Q  T  L  W  D  *  P  Y  W  *  F  *  G  S  W  D  D  C  F  G  E  S  S  *  S  V  A  Q  N  A  *  T  G  R  R  C  G  V  C  F  Y  W  R  H  I  C  G  P  V  G  L  L  C  I  C  R  H  S  I  N  C  I  S  T  C  E  *  D  F  Y  G  A  T  G  S  T  Y  C  K  W  G  F  C  V  E  Y  *  H  *  F  *  W  L  Y  A  V  D  S  *  S  Y  C  *  V  A  Y  L  L  G  K  F  V  E  *  F  E  V  G  R  A  K  D  G  S  N  R  D  F  T  A  V  *  L  G  S  S  G  V  G  Y  S  S  W  W  E  L  R  Q  H  I  C  I  L  *  R  F  S  D  V  Q  R  V  G  T  C  G  S  H  P  *  A  C  L  C  S  S  C  Q  R  *  S  A  L  L  A  L  Q  I  W  L  E  R  L  Q  T  C  E  G  E  H  N  I  C  I  C  Y  T  D  W  *  P  S  V  Y  R  Q  S  C  F  C  P  A  E  L  Q  R  D  S  *  G  G  H  R  G  G  V  D  G  C  Y  G  S  G  R  L  H  W  D  V  H  L  P  A  Y  W  C  G  I  D  C  A  V  Q  A  E  K  Q  W  S  H  C  T  N  *  *  D  C  G  C  E  Y  S  S  W  I  E  V  Y  S  I  Q  D  *  L  P  L  K  G  N  K  R  H  G  M  S  V  F  *  P  T  C  G  S  E  S  R  F  W  I  S  Y  G  C  S  E  E  L  F  V  E  P  K  F  Q  A  M  M  C  C  Q  F  *  T  *  *  V  C  N  M  Y  S  F  C  Q  H  M  V  I  Y  R  H  *  F  A  V  *  K  *  P  D  G  D  F  V  V  G  R  V  G  E  R  K  A  L  H  Y  F  *  E  Y  Y  E  L  E  S  F  Y  G  T  L  F  F  V  T  V  C  F  L  *  H  C  F  G  A  S  Q  W  K  L  P  *  F  D  L  F  C  *  I  I  *  P  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47813" stop="46224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSQLHNHTTMAASCMLRSSFLSPGLPQLHHQSTSKPNNGIHFFAPIKATATNDAISQQKHRRPADENIREEARRHCSSHNFSARYVPFNAGPTSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFSNPPVEVKADFGSVMDVLKSYLLSQNSKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46223" stop="46023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVVSFKHSKFVICTPFVSIWSFIAINLPYRNDQMVILLLAELGRERLYITFESTTNSSPFMELCFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47813" e_stop="46202"/>
            <exon e_start="46102" e_stop="45965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.816" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47813" e_stop="46202" e_length="1612"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.816">
            <gDNA_intron_boundary i_start="46201" i_stop="46103" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46102" e_stop="45965" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47813" stop="46963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47809" stop="47203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47809" stop="47308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47807" stop="47143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47806" stop="47112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47805" stop="47278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47804" stop="47498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47802" stop="47128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47802" stop="47159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47796" stop="47247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47794" stop="47179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47794" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47793" stop="47124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47793" stop="47318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47792" stop="46202"/>
              <exon start="46102" stop="45971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47791" stop="47153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47791" stop="47318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47787" stop="47447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47783" stop="46963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47782" stop="47321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47780" stop="47213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47779" stop="47310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47777" stop="47129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47773" stop="47208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47773" stop="47334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47771" stop="47183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47771" stop="47204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47768" stop="47162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47747" stop="47006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47728" stop="47182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47713" stop="47181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47586" stop="47067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47572" stop="46926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47542" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47415" stop="46958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="46616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47058" stop="46379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46870" stop="46337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46531" stop="46202"/>
              <exon start="46102" stop="45965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATA : AGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGA</gDNA_template>
            <first_frame> A  S  S  Q  L  H  N  H  T  T  M  A  A  S  C  M  L  R  S  S  F  L  S  P  G  L  P  Q  L  H  H  Q  S  T  S  K  P  N  N  G  I  H  F  F  A  P  I  K  A  T  A  T  N  D  A  I  S  Q  Q  K  H  R  R  P  A  D  E  N  I  R  E  E  A  R  R  H  C  S  S  H  N  F  S  A  R  Y  V  P  F  N  A  G  P  T  S  D  E  W  Y  S  L  D  E  I  V  Y  R  S  R  S  G  G  L  L  D  V  Q  H  D  M  D  A  L  K  K  F  D  G  Q  Y  W  R  S  L  F  D  S  R  V  G  K  T  T  W  P  Y  G  S  G  V  W  S  K  K  E  W  V  L  P  E  I  D  S  D  D  I  V  S  A  F  E  G  N  S  N  L  F  W  A  E  R  F  G  K  Q  F  L  G  M  T  D  L  W  V  K  H  C  G  I  S  H  T  G  S  F  K  D  L  G  M  T  V  L  V  S  Q  V  N  R  L  R  K  M  H  K  P  V  V  G  V  G  C  A  S  T  G  D  T  S  A  A  L  S  A  Y  C  A  S  A  G  I  P  S  I  V  F  L  P  A  N  K  I  S  M  A  Q  L  V  Q  P  I  A  N  G  A  F  V  L  S  I  D  T  D  F  D  G  C  M  Q  L  I  R  E  V  T  A  E  L  P  I  Y  L  A  N  S  L  N  S  L  R  L  E  G  Q  K  T  A  A  I  E  I  L  Q  Q  F  D  W  E  V  P  E  W  V  I  V  P  G  G  N  L  G  N  I  Y  A  F  Y  K  G  F  Q  M  C  K  E  L  G  L  V  D  R  I  P  R  L  V  C  A  Q  A  A  N  A  N  P  L  Y  L  H  Y  K  S  G  W  K  D  F  K  P  V  K  A  N  T  T  F  A  S  A  I  Q  I  G  D  P  V  S  I  D  R  A  V  F  A  L  Q  N  C  N  G  I  V  E  E  A  T  E  E  E  L  M  D  A  M  A  Q  A  D  S  T  G  M  F  I  C  P  H  T  G  V  A  L  T  A  L  F  K  L  R  N  S  G  V  I  A  P  T  D  R  T  V  V  V  S  T  A  H  G  L  K  F  T  Q  S  K  I  D  Y  H  S  K  E  I  K  D  M  E  C  R  F  S  N  P  P  V  E  V  K  A  D  F  G  S  V  M  D  V  L  K  S  Y  L  L  S  Q  N  S  K  L  *  C  V  V  S  F  K  H   : K  L  G  R  E  R  L  Y  I  T  F  E  S  T  T  N  S  S  P  F  M  E  L  C  F  L  *  Q  S  A  F  C  S  I  A  L  V  H  H  N  G  N  C  L  N  L  </first_frame>
            <second_frame>  R  L  L  S  F  T  I  T  Q  Q  W  R  L  L  A  C  L  D  P  L  S  S  L  L  V  F  L  N  F  I  I  N  Q  L  Q  N  P  I  M  V  F  I  S  S  L  R  L  K  L  Q  P  Q  T  M  R  F  L  N  R  S  T  D  V  L  L  T  R  T  S  V  K  K  R  A  V  T  A  H  L  I  I  F  Q  P  G  M  F  L  L  M  L  V  L  L  L  M  N  G  I  L  *  M  R  L  F  I  G  V  G  L  V  D  Y  L  M  F  S  M  I  W  M  P  *  R  S  L  M  V  S  I  G  D  P  C  L  I  L  V  S  V  R  P  L  G  L  M  G  P  V  F  G  L  R  R  N  G  F  C  L  K  L  I  V  M  I  L  L  V  L  L  K  G  T  R  I  C  F  G  L  S  V  L  A  N  S  F  *  A  *  L  I  C  G  S  N  T  V  G  L  A  I  L  V  V  L  R  I  L  G  *  L  F  W  *  V  K  L  I  G  C  A  K  C  I  N  R  S  S  V  W  G  V  L  L  L  E  T  H  L  R  P  C  R  L  T  V  H  L  Q  A  F  H  Q  L  Y  F  Y  L  R  I  R  F  L  W  R  N  W  F  N  L  L  Q  M  G  L  L  C  *  V  L  T  L  I  L  M  V  V  C  S  *  F  V  K  L  L  L  S  C  L  F  T  W  Q  I  R  *  I  V  *  G  W  K  G  K  R  R  Q  Q  S  R  F  Y  S  S  L  I  G  K  F  R  S  G  L  *  F  L  V  G  T  *  A  T  Y  M  H  F  I  K  V  F  R  C  A  K  S  W  D  L  W  I  A  S  L  G  L  F  V  L  K  L  P  T  L  I  R  S  T  C  I  T  N  L  V  G  K  T  S  N  L  *  R  R  T  Q  H  L  H  L  L  Y  R  L  V  T  Q  C  L  *  T  E  L  F  L  P  C  R  T  A  T  G  *  L  R  R  P  P  R  R  S  *  W  M  L  W  L  R  Q  T  P  L  G  C  S  F  A  R  I  L  V  W  H  *  L  R  C  S  S  *  E  T  V  E  S  L  H  Q  L  I  G  L  W  L  *  V  Q  L  M  D  *  S  L  L  N  P  R  L  I  T  T  Q  R  K  *  K  T  W  N  V  G  F  L  T  H  L  W  K  *  K  Q  I  L  D  Q  L  W  M  F  *  R  A  I  C  *  A  K  I  P  S  Y  D  V  L  S  V  L  N  I  :  S  W  G  E  K  G  S  T  L  L  L  R  V  L  R  T  R  V  L  L  W  N  S  V  F  C  N  S  L  L  F  V  A  L  L  W  C  I  T  M  E  T  A  L  I  * </second_frame>
            <third_frame>   V  F  S  A  S  Q  S  H  N  N  G  G  F  L  H  A  *  I  L  F  P  L  S  W  S  S  S  T  S  S  S  I  N  F  K  T  Q  *  W  Y  S  F  L  R  S  D  *  S  Y  S  H  K  R  C  D  F  S  T  E  A  P  T  S  C  *  R  E  H  P  *  R  S  A  P  S  L  L  I  S  *  F  F  S  Q  V  C  S  F  *  C  W  S  Y  F  *  *  M  V  F  S  R  *  D  C  L  S  E  S  V  W  W  I  T  *  C  S  A  *  Y  G  C  L  K  E  V  *  W  S  V  L  A  I  L  V  *  F  S  C  R  *  D  H  L  A  L  W  V  R  C  L  V  *  E  G  M  G  S  A  *  N  *  *  *  *  Y  C  *  C  F  *  R  E  L  E  S  V  L  G  *  A  F  W  Q  T  V  S  R  H  D  *  F  V  G  Q  T  L  W  D  *  P  Y  W  *  F  *  G  S  W  D  D  C  F  G  E  S  S  *  S  V  A  Q  N  A  *  T  G  R  R  C  G  V  C  F  Y  W  R  H  I  C  G  P  V  G  L  L  C  I  C  R  H  S  I  N  C  I  S  T  C  E  *  D  F  Y  G  A  T  G  S  T  Y  C  K  W  G  F  C  V  E  Y  *  H  *  F  *  W  L  Y  A  V  D  S  *  S  Y  C  *  V  A  Y  L  L  G  K  F  V  E  *  F  E  V  G  R  A  K  D  G  S  N  R  D  F  T  A  V  *  L  G  S  S  G  V  G  Y  S  S  W  W  E  L  R  Q  H  I  C  I  L  *  R  F  S  D  V  Q  R  V  G  T  C  G  S  H  P  *  A  C  L  C  S  S  C  Q  R  *  S  A  L  L  A  L  Q  I  W  L  E  R  L  Q  T  C  E  G  E  H  N  I  C  I  C  Y  T  D  W  *  P  S  V  Y  R  Q  S  C  F  C  P  A  E  L  Q  R  D  S  *  G  G  H  R  G  G  V  D  G  C  Y  G  S  G  R  L  H  W  D  V  H  L  P  A  Y  W  C  G  I  D  C  A  V  Q  A  E  K  Q  W  S  H  C  T  N  *  *  D  C  G  C  E  Y  S  S  W  I  E  V  Y  S  I  Q  D  *  L  P  L  K  G  N  K  R  H  G  M  S  V  F  *  P  T  C  G  S  E  S  R  F  W  I  S  Y  G  C  S  E  E  L  F  V  E  P  K  F  Q  A  M  M  C  C  Q  F  *  T  * :   V  G  E  R  K  A  L  H  Y  F  *  E  Y  Y  E  L  E  S  F  Y  G  T  L  F  F  V  T  V  C  F  L  *  H  C  F  G  A  S  Q  W  K  L  P  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47813" stop="46224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSQLHNHTTMAASCMLRSSFLSPGLPQLHHQSTSKPNNGIHFFAPIKATATNDAISQQKHRRPADENIREEARRHCSSHNFSARYVPFNAGPTSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFSNPPVEVKADFGSVMDVLKSYLLSQNSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47751" e_stop="47560"/>
            <exon e_start="46946" e_stop="45932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47751" e_stop="47560" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="47559" i_stop="46947" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="46946" e_stop="45932" e_length="1015"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47751" stop="47560"/>
              <exon start="46946" stop="46771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46870" stop="46337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46788" stop="45971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46765" stop="46166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46641" stop="45932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="45965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46593" stop="46021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46427" stop="45932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467680" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46254" stop="46025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAG : TTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</gDNA_template>
            <first_frame> P  L  S  W  S  S  S  T  S  S  S  I  N  F  K  T  Q  *  W  Y  S  F  L  R  S  D  *  S  Y  S  H  K  R  C  D  F  S  T  E  A  P  T  S  C  *  R  E  H  P  *  R  S  A  P  S  L  L  I  S  *  F  F  S  Q  :  L  I  R  E  V  T  A  E  L  P  I  Y  L  A  N  S  L  N  S  L  R  L  E  G  Q  K  T  A  A  I  E  I  L  Q  Q  F  D  W  E  V  P  E  W  V  I  V  P  G  G  N  L  G  N  I  Y  A  F  Y  K  G  F  Q  M  C  K  E  L  G  L  V  D  R  I  P  R  L  V  C  A  Q  A  A  N  A  N  P  L  Y  L  H  Y  K  S  G  W  K  D  F  K  P  V  K  A  N  T  T  F  A  S  A  I  Q  I  G  D  P  V  S  I  D  R  A  V  F  A  L  Q  N  C  N  G  I  V  E  E  A  T  E  E  E  L  M  D  A  M  A  Q  A  D  S  T  G  M  F  I  C  P  H  T  G  V  A  L  T  A  L  F  K  L  R  N  S  G  V  I  A  P  T  D  R  T  V  V  V  S  T  A  H  G  L  K  F  T  Q  S  K  I  D  Y  H  S  K  E  I  K  D  M  E  C  R  F  S  N  P  P  V  E  V  K  A  D  F  G  S  V  M  D  V  L  K  S  Y  L  L  S  Q  N  S  K  L  *  C  V  V  S  F  K  H  S  K  F  V  I  C  T  P  F  V  S  I  W  S  F  I  A  I  N  L  P  Y  R  N  D  Q  M  V  I  L  L  L  A  E  L  G  R  E  R  L  Y  I  T  F  E  S  T  T  N  S  S  P  F  M  E  L  C  F  L  *  Q  S  A  F  C  S  I  A  L  V  H  H  N  G  N  C  L  N  L  T  C  F  V  K  L  Y  D  L  K  E  </first_frame>
            <second_frame>  L  S  P  G  L  P  Q  L  H  H  Q  S  T  S  K  P  N  N  G  I  H  F  F  A  P  I  K  A  T  A  T  N  D  A  I  S  Q  Q  K  H  R  R  P  A  D  E  N  I  R  E  E  A  R  R  H  C  S  S  H  N  F  S  A  S :   *  F  V  K  L  L  L  S  C  L  F  T  W  Q  I  R  *  I  V  *  G  W  K  G  K  R  R  Q  Q  S  R  F  Y  S  S  L  I  G  K  F  R  S  G  L  *  F  L  V  G  T  *  A  T  Y  M  H  F  I  K  V  F  R  C  A  K  S  W  D  L  W  I  A  S  L  G  L  F  V  L  K  L  P  T  L  I  R  S  T  C  I  T  N  L  V  G  K  T  S  N  L  *  R  R  T  Q  H  L  H  L  L  Y  R  L  V  T  Q  C  L  *  T  E  L  F  L  P  C  R  T  A  T  G  *  L  R  R  P  P  R  R  S  *  W  M  L  W  L  R  Q  T  P  L  G  C  S  F  A  R  I  L  V  W  H  *  L  R  C  S  S  *  E  T  V  E  S  L  H  Q  L  I  G  L  W  L  *  V  Q  L  M  D  *  S  L  L  N  P  R  L  I  T  T  Q  R  K  *  K  T  W  N  V  G  F  L  T  H  L  W  K  *  K  Q  I  L  D  Q  L  W  M  F  *  R  A  I  C  *  A  K  I  P  S  Y  D  V  L  S  V  L  N  I  V  S  L  *  Y  V  L  L  L  S  A  Y  G  H  L  S  P  L  I  C  R  I  E  M  T  R  W  *  F  C  C  W  Q  S  W  G  E  K  G  S  T  L  L  L  R  V  L  R  T  R  V  L  L  W  N  S  V  F  C  N  S  L  L  F  V  A  L  L  W  C  I  T  M  E  T  A  L  I  *  P  V  L  L  N  Y  M  T  L  K  R </second_frame>
            <third_frame>   S  L  L  V  F  L  N  F  I  I  N  Q  L  Q  N  P  I  M  V  F  I  S  S  L  R  L  K  L  Q  P  Q  T  M  R  F  L  N  R  S  T  D  V  L  L  T  R  T  S  V  K  K  R  A  V  T  A  H  L  I  I  F  Q  P   : V  D  S  *  S  Y  C  *  V  A  Y  L  L  G  K  F  V  E  *  F  E  V  G  R  A  K  D  G  S  N  R  D  F  T  A  V  *  L  G  S  S  G  V  G  Y  S  S  W  W  E  L  R  Q  H  I  C  I  L  *  R  F  S  D  V  Q  R  V  G  T  C  G  S  H  P  *  A  C  L  C  S  S  C  Q  R  *  S  A  L  L  A  L  Q  I  W  L  E  R  L  Q  T  C  E  G  E  H  N  I  C  I  C  Y  T  D  W  *  P  S  V  Y  R  Q  S  C  F  C  P  A  E  L  Q  R  D  S  *  G  G  H  R  G  G  V  D  G  C  Y  G  S  G  R  L  H  W  D  V  H  L  P  A  Y  W  C  G  I  D  C  A  V  Q  A  E  K  Q  W  S  H  C  T  N  *  *  D  C  G  C  E  Y  S  S  W  I  E  V  Y  S  I  Q  D  *  L  P  L  K  G  N  K  R  H  G  M  S  V  F  *  P  T  C  G  S  E  S  R  F  W  I  S  Y  G  C  S  E  E  L  F  V  E  P  K  F  Q  A  M  M  C  C  Q  F  *  T  *  *  V  C  N  M  Y  S  F  C  Q  H  M  V  I  Y  R  H  *  F  A  V  *  K  *  P  D  G  D  F  V  V  G  R  V  G  E  R  K  A  L  H  Y  F  *  E  Y  Y  E  L  E  S  F  Y  G  T  L  F  F  V  T  V  C  F  L  *  H  C  F  G  A  S  Q  W  K  L  P  *  F  D  L  F  C  *  I  I  *  P  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47571" stop="47560"/>
                    <exon start="46946" stop="46224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFSNPPVEVKADFGSVMDVLKSYLLSQNSKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46223" stop="46023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVVSFKHSKFVICTPFVSIWSFIAINLPYRNDQMVILLLAELGRERLYITFESTTNSSPFMELCFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47749" stop="47560"/>
                    <exon start="46946" stop="46936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLVFLNFIINQLQNPIMVFISSLRLKLQPQTMRFLNRSTDVLLTRTSVKKRAVTAHLIIFQPVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="49707" PGL_stop="51953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49708" e_stop="51953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49708" e_stop="51953" e_length="2246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49708" stop="50330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49715" stop="50033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49716" stop="50424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49838" stop="50123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50173" stop="50833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50176" stop="50719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50372" stop="50877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50412" stop="50840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50471" stop="51066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50472" stop="51085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50472" stop="50897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50800" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50965" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51193" stop="51945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51289" stop="51953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51370" stop="51927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAAATTTGTGT</gDNA_template>
            <first_frame> Q  H  S  T  S  K  F  T  P  I  E  Y  L  R  R  D  P  R  F  S  G  E  F  S  D  L  L  R  F  V  *  L  T  I  M  N  L  S  H  M  M  R  L  Q  K  C  *  V  L  L  L  L  P  I  S  D  P  K  Y  G  F  A  S  E  K  N  L  Y  L  L  H  L  A  S  I  *  *  I  R  R  *  F  V  L  Y  I  S  R  K  E  *  K  Y  L  V  K  I  E  T  E  T  G  K  L  G  K  M  S  L  G  V  A  E  E  E  S  G  K  E  I  Q  L  P  A  D  V  D  W  Q  M  L  D  K  S  K  F  F  F  L  G  A  A  L  F  S  G  V  S  A  V  L  Y  P  V  V  V  L  K  T  R  Q  Q  V  A  Q  A  H  L  S  C  F  R  T  A  L  S  V  V  R  L  E  G  I  R  G  L  Y  R  G  F  G  T  S  L  M  G  T  I  P  A  R  A  L  Y  M  T  A  L  E  V  T  K  S  S  V  G  T  A  T  V  R  L  G  I  P  E  P  T  A  T  A  L  A  S  A  A  A  G  L  S  A  A  V  A  A  Q  L  V  W  T  P  V  D  V  V  S  Q  R  L  M  V  Q  R  V  C  A  A  P  A  S  C  K  Y  L  N  G  I  D  A  F  R  R  I  L  K  T  D  G  P  K  G  L  Y  R  G  F  G  F  S  I  L  T  Y  A  P  S  N  A  L  W  W  T  S  Y  T  I  T  Q  R  L  V  W  S  G  Y  G  C  Y  F  S  K  N  G  D  D  R  I  E  D  N  I  K  S  T  L  K  P  D  S  K  T  V  M  M  V  Q  G  V  S  A  A  M  A  G  G  V  S  A  L  I  T  T  P  L  D  T  I  K  T  R  L  Q  V  L  D  G  D  E  N  G  R  R  G  P  T  V  A  Q  T  V  R  N  L  V  K  E  G  G  W  M  A  C  Y  R  G  L  G  P  R  W  A  S  M  S  M  S  A  T  T  M  I  T  T  Y  E  F  L  K  R  L  S  T  K  N  Q  E  N  W  A  *  S  S  P  *  I  A  V  T  L  L  R  F  M  F  L  S  L  I  H  V  *  V  F  F  L  N  D  P  F  L  G  I  S  M  L  S  L  D  I  K  K  T  *  I  K  N  K  K  N  D  E  C  T  K  Y  E  S  V  Y  I  V  H  F  T  K  L  I  W  L  L  L  L  F  L  F  P  L  S  Y  P  M  L  S  L  V  L  V  L  T  L  A  V  L  S  E  T  A  S  P  S  Q  *  G  R  D  K  Q  C  T  L  Y  F  I  S  M  N  *  S  G  Y  V  A  V  V  V  L  S  N  L  S  T  Y  R  C  E  T  S  F  S  S  F  K  N  Y  T  F  S  R  M  E  P  K  *  L  E  A  I  L  L  R  H  *  S  N  S  K  M  R  I  C  S  G  L  N  *  L  L  A  N  L  N  Q  W  K  M  R  F  C  L  I  M  M  L  I  *  T  C  C  V  H  K  G  F  S  I  S  I  L  D  L  M  *  Q  E  L  S  Q  I  E  V  A  H  I  V  G  *  G  L  L  *  A  E  N  L  C  K  I  C  Q  F  G  N  R  S  *  E  R  *  R  *  V  K  R  E  S  D  Y  V  Y  C  Y  F  V  V  S  F  P  L  L  L  L  F  F  L  F  F  F  L  Y  V  E  Y  L  S  K  I  I  P  F  I  C  *  D  R  N  K  I  C   </first_frame>
            <second_frame>  S  T  A  Q  A  S  S  L  R  L  N  I  S  A  E  I  L  D  F  P  V  S  F  P  I  Y  Y  D  L  Y  S  *  P  L  *  I  F  L  I  *  C  D  Y  R  N  V  R  S  F  C  Y  Y  P  F  P  I  Q  N  M  D  S  P  A  K  K  I  F  T  F  S  I  *  L  Q  F  S  R  L  D  V  D  L  Y  C  T  F  P  G  R  N  K  S  I  L  *  K  L  R  P  R  Q  E  N  W  G  K  *  V  *  V  *  R  R  R  N  R  V  R  K  S  S  C  R  R  M  *  T  G  K  C  W  T  N  L  S  F  S  S  S  A  P  P  Y  F  Q  V  F  Q  L  C  F  I  L  L  W  C  *  R  L  D  N  R  *  P  K  L  I  F  P  V  L  E  L  P  Y  P  L  L  G  L  K  E  F  V  D  C  I  G  G  L  G  L  R  *  W  V  Q  F  L  L  G  H  F  I  *  L  L  L  R  L  P  R  V  V  L  V  R  P  R  L  G  S  A  F  L  S  Q  L  R  L  R  *  P  V  L  L  L  D  *  A  Q  L  W  P  H  N  W  F  G  L  R  W  M  W  S  A  S  G  S  W  C  S  V  F  V  L  H  Q  H  P  V  N  I  S  M  G  L  M  L  F  D  E  S  S  R  Q  M  D  L  R  D  S  T  E  V  L  G  F  Q  F  *  H  M  P  H  P  M  H  C  G  G  H  P  T  P  S  L  S  G  L  S  G  V  G  M  D  V  T  S  A  R  M  V  M  T  E  L  R  I  T  S  K  V  L  *  S  L  I  R  R  L  L  *  W  F  R  E  *  V  Q  P  W  P  E  V  F  Q  R  *  L  Q  H  H  *  T  Q  S  R  Q  D  C  R  S  W  M  A  M  R  M  D  G  E  G  Q  Q  *  L  R  R  *  E  I  *  *  R  K  V  G  G  W  L  V  T  E  D  *  A  L  D  G  L  Q  C  P  C  L  Q  P  Q  *  S  L  L  M  N  S  S  N  A  S  P  Q  R  I  K  K  I  G  H  S  H  P  H  R  *  L  S  L  F  L  D  L  C  F  S  L  *  S  M  Y  K  F  S  F  *  M  I  L  F  *  E  S  V  C  *  V  *  T  *  K  K  P  K  S  R  T  K  R  M  M  N  V  Q  S  M  N  L  Y  I  *  S  T  S  L  N  L  F  G  C  C  Y  C  F  S  F  R  *  A  T  L  C  F  L  L  C  L  F  *  L  S  R  F  F  R  K  Q  P  L  H  L  N  E  V  G  I  S  S  V  H  S  T  S  S  Q  *  T  K  V  G  M  L  L  L  L  Y  *  A  I  C  L  L  T  D  V  R  L  L  F  L  P  S  R  T  I  L  F  R  E  W  S  Q  N  S  W  K  L  S  F  S  G  T  D  Q  I  V  R  *  E  S  V  V  G  L  I  D  F  *  L  I  S  T  N  G  R  *  D  S  A  *  S  *  C  *  F  E  H  V  A  C  T  K  V  L  A  Y  L  F  L  I  *  C  D  K  N  S  V  R  L  R  L  L  I  L  S  D  E  G  C  C  R  L  K  T  C  V  K  F  V  N  L  G  I  G  A  R  R  G  R  D  K  *  K  E  K  V  I  M  C  I  V  I  L  L  S  P  S  L  Y  Y  F  S  F  F  F  F  S  F  C  M  L  S  I  Y  R  K  *  Y  L  L  S  V  E  I  G  I  K  F  V  </second_frame>
            <third_frame>   A  Q  H  K  Q  V  H  S  D  *  I  S  P  P  R  S  *  I  F  R  *  V  F  R  S  I  T  I  C  I  V  D  H  Y  E  S  F  S  Y  D  A  I  T  E  M  L  G  P  F  A  I  T  H  F  R  S  K  I  W  I  R  Q  R  K  K  S  L  P  S  P  S  S  F  N  L  V  D  *  T  L  I  C  T  V  H  F  P  E  G  I  K  V  S  C  E  N  *  D  R  D  R  K  T  G  E  N  E  F  R  C  S  G  G  G  I  G  *  G  N  P  V  A  G  G  C  R  L  A  N  A  G  Q  I  *  V  F  L  P  R  R  R  L  I  F  R  C  F  S  C  A  L  S  C  C  G  V  E  D  S  T  T  G  S  P  S  S  S  F  L  F  *  N  C  L  I  R  C  *  A  *  R  N  S  W  I  V  S  G  V  W  D  F  V  D  G  Y  N  S  C  *  G  T  L  Y  D  C  S  *  G  Y  Q  E  *  C  W  Y  G  H  G  *  A  R  H  S  *  A  N  C  D  C  V  S  Q  C  C  C  W  I  E  R  S  C  G  R  T  I  G  L  D  S  G  G  C  G  Q  P  A  A  H  G  A  A  C  L  C  C  T  S  I  L  *  I  S  Q  W  D  *  C  F  S  T  N  P  Q  D  R  W  T  *  G  T  L  Q  R  F  W  V  F  N  F  D  I  C  P  I  Q  C  T  V  V  D  I  L  H  H  H  S  A  A  C  L  E  W  V  W  M  L  L  Q  Q  E  W  *  *  Q  N  *  G  *  H  Q  K  Y  S  E  A  *  F  E  D  C  Y  D  G  S  G  S  E  C  S  H  G  R  R  C  F  S  A  D  Y  N  T  I  R  H  N  Q  D  K  I  A  G  P  G  W  R  *  E  W  T  E  R  A  N  S  S  S  D  G  K  K  F  S  K  G  R  W  V  D  G  L  L  Q  R  I  R  P  S  M  G  F  N  V  H  V  C  N  H  N  D  H  Y  L  *  I  P  Q  T  P  L  H  K  E  S  R  K  L  G  I  V  I  P  I  D  S  C  H  S  S  *  I  Y  V  S  L  F  D  P  C  I  S  F  L  F  E  *  S  F  F  R  N  Q  Y  A  E  F  R  H  K  K  N  L  N  Q  E  Q  K  E  *  *  M  Y  K  V  *  I  C  I  Y  S  P  L  H  *  T  Y  L  A  V  V  T  V  S  L  S  V  K  L  P  Y  A  F  S  C  A  C  F  N  S  R  G  S  F  G  N  S  L  S  I  S  M  R  *  G  *  A  V  Y  T  L  L  H  L  N  E  L  K  W  V  C  C  C  C  C  T  E  Q  F  V  Y  L  Q  M  *  D  F  F  F  F  L  Q  E  L  Y  F  F  E  N  G  A  K  I  V  G  S  Y  P  S  Q  A  L  I  K  *  *  D  E  N  L  *  W  A  *  L  T  F  S  *  S  Q  P  M  E  D  E  I  L  P  D  H  D  V  D  L  N  M  L  R  A  Q  R  F  *  H  I  Y  S  *  F  N  V  T  R  T  Q  S  D  *  G  C  S  Y  C  R  M  R  V  V  V  G  *  K  P  V  *  N  L  S  I  W  E  *  E  L  G  E  V  E  I  S  K  K  R  K  *  L  C  V  L  L  F  C  C  L  L  P  S  I  T  S  L  F  S  F  F  L  F  V  C  *  V  F  I  E  N  N  T  F  Y  L  L  R  *  E  *  N  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49981" stop="51057"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYLVKIETETGKLGKMSLGVAEEESGKEIQLPADVDWQMLDKSKFFFLGAALFSGVSAVLYPVVVLKTRQQVAQAHLSCFRTALSVVRLEGIRGLYRGFGTSLMGTIPARALYMTALEVTKSSVGTATVRLGIPEPTATALASAAAGLSAAVAAQLVWTPVDVVSQRLMVQRVCAAPASCKYLNGIDAFRRILKTDGPKGLYRGFGFSILTYAPSNALWWTSYTITQRLVWSGYGCYFSKNGDDRIEDNIKSTLKPDSKTVMMVQGVSAAMAGGVSALITTPLDTIKTRLQVLDGDENGRRGPTVAQTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSTKNQENWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49707" e_stop="49768"/>
            <exon e_start="50144" e_stop="51953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.308" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49707" e_stop="49768" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.308">
            <gDNA_intron_boundary i_start="49769" i_stop="50143" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="50144" e_stop="51953" e_length="1810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49707" stop="49768"/>
              <exon start="50144" stop="50899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50173" stop="50833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50176" stop="50719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50372" stop="50877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50412" stop="50840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50471" stop="51066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50472" stop="51085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50472" stop="50897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50800" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50965" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51193" stop="51945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51289" stop="51953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51370" stop="51927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCACAGCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCG : GTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAAATTTGTGT</gDNA_template>
            <first_frame> A  A  Q  H  K  Q  V  H  S  D  *  I  S  P  P  R  S  *  I  F  R :   C  F  S  C  A  L  S  C  C  G  V  E  D  S  T  T  G  S  P  S  S  S  F  L  F  *  N  C  L  I  R  C  *  A  *  R  N  S  W  I  V  S  G  V  W  D  F  V  D  G  Y  N  S  C  *  G  T  L  Y  D  C  S  *  G  Y  Q  E  *  C  W  Y  G  H  G  *  A  R  H  S  *  A  N  C  D  C  V  S  Q  C  C  C  W  I  E  R  S  C  G  R  T  I  G  L  D  S  G  G  C  G  Q  P  A  A  H  G  A  A  C  L  C  C  T  S  I  L  *  I  S  Q  W  D  *  C  F  S  T  N  P  Q  D  R  W  T  *  G  T  L  Q  R  F  W  V  F  N  F  D  I  C  P  I  Q  C  T  V  V  D  I  L  H  H  H  S  A  A  C  L  E  W  V  W  M  L  L  Q  Q  E  W  *  *  Q  N  *  G  *  H  Q  K  Y  S  E  A  *  F  E  D  C  Y  D  G  S  G  S  E  C  S  H  G  R  R  C  F  S  A  D  Y  N  T  I  R  H  N  Q  D  K  I  A  G  P  G  W  R  *  E  W  T  E  R  A  N  S  S  S  D  G  K  K  F  S  K  G  R  W  V  D  G  L  L  Q  R  I  R  P  S  M  G  F  N  V  H  V  C  N  H  N  D  H  Y  L  *  I  P  Q  T  P  L  H  K  E  S  R  K  L  G  I  V  I  P  I  D  S  C  H  S  S  *  I  Y  V  S  L  F  D  P  C  I  S  F  L  F  E  *  S  F  F  R  N  Q  Y  A  E  F  R  H  K  K  N  L  N  Q  E  Q  K  E  *  *  M  Y  K  V  *  I  C  I  Y  S  P  L  H  *  T  Y  L  A  V  V  T  V  S  L  S  V  K  L  P  Y  A  F  S  C  A  C  F  N  S  R  G  S  F  G  N  S  L  S  I  S  M  R  *  G  *  A  V  Y  T  L  L  H  L  N  E  L  K  W  V  C  C  C  C  C  T  E  Q  F  V  Y  L  Q  M  *  D  F  F  F  F  L  Q  E  L  Y  F  F  E  N  G  A  K  I  V  G  S  Y  P  S  Q  A  L  I  K  *  *  D  E  N  L  *  W  A  *  L  T  F  S  *  S  Q  P  M  E  D  E  I  L  P  D  H  D  V  D  L  N  M  L  R  A  Q  R  F  *  H  I  Y  S  *  F  N  V  T  R  T  Q  S  D  *  G  C  S  Y  C  R  M  R  V  V  V  G  *  K  P  V  *  N  L  S  I  W  E  *  E  L  G  E  V  E  I  S  K  K  R  K  *  L  C  V  L  L  F  C  C  L  L  P  S  I  T  S  L  F  S  F  F  L  F  V  C  *  V  F  I  E  N  N  T  F  Y  L  L  R  *  E  *  N  L  C </first_frame>
            <second_frame>  Q  H  S  T  S  K  F  T  P  I  E  Y  L  R  R  D  P  R  F  S   : G  V  S  A  V  L  Y  P  V  V  V  L  K  T  R  Q  Q  V  A  Q  A  H  L  S  C  F  R  T  A  L  S  V  V  R  L  E  G  I  R  G  L  Y  R  G  F  G  T  S  L  M  G  T  I  P  A  R  A  L  Y  M  T  A  L  E  V  T  K  S  S  V  G  T  A  T  V  R  L  G  I  P  E  P  T  A  T  A  L  A  S  A  A  A  G  L  S  A  A  V  A  A  Q  L  V  W  T  P  V  D  V  V  S  Q  R  L  M  V  Q  R  V  C  A  A  P  A  S  C  K  Y  L  N  G  I  D  A  F  R  R  I  L  K  T  D  G  P  K  G  L  Y  R  G  F  G  F  S  I  L  T  Y  A  P  S  N  A  L  W  W  T  S  Y  T  I  T  Q  R  L  V  W  S  G  Y  G  C  Y  F  S  K  N  G  D  D  R  I  E  D  N  I  K  S  T  L  K  P  D  S  K  T  V  M  M  V  Q  G  V  S  A  A  M  A  G  G  V  S  A  L  I  T  T  P  L  D  T  I  K  T  R  L  Q  V  L  D  G  D  E  N  G  R  R  G  P  T  V  A  Q  T  V  R  N  L  V  K  E  G  G  W  M  A  C  Y  R  G  L  G  P  R  W  A  S  M  S  M  S  A  T  T  M  I  T  T  Y  E  F  L  K  R  L  S  T  K  N  Q  E  N  W  A  *  S  S  P  *  I  A  V  T  L  L  R  F  M  F  L  S  L  I  H  V  *  V  F  F  L  N  D  P  F  L  G  I  S  M  L  S  L  D  I  K  K  T  *  I  K  N  K  K  N  D  E  C  T  K  Y  E  S  V  Y  I  V  H  F  T  K  L  I  W  L  L  L  L  F  L  F  P  L  S  Y  P  M  L  S  L  V  L  V  L  T  L  A  V  L  S  E  T  A  S  P  S  Q  *  G  R  D  K  Q  C  T  L  Y  F  I  S  M  N  *  S  G  Y  V  A  V  V  V  L  S  N  L  S  T  Y  R  C  E  T  S  F  S  S  F  K  N  Y  T  F  S  R  M  E  P  K  *  L  E  A  I  L  L  R  H  *  S  N  S  K  M  R  I  C  S  G  L  N  *  L  L  A  N  L  N  Q  W  K  M  R  F  C  L  I  M  M  L  I  *  T  C  C  V  H  K  G  F  S  I  S  I  L  D  L  M  *  Q  E  L  S  Q  I  E  V  A  H  I  V  G  *  G  L  L  *  A  E  N  L  C  K  I  C  Q  F  G  N  R  S  *  E  R  *  R  *  V  K  R  E  S  D  Y  V  Y  C  Y  F  V  V  S  F  P  L  L  L  L  F  F  L  F  F  F  L  Y  V  E  Y  L  S  K  I  I  P  F  I  C  *  D  R  N  K  I  C   </second_frame>
            <third_frame>   S  T  A  Q  A  S  S  L  R  L  N  I  S  A  E  I  L  D  F  P  :  V  F  Q  L  C  F  I  L  L  W  C  *  R  L  D  N  R  *  P  K  L  I  F  P  V  L  E  L  P  Y  P  L  L  G  L  K  E  F  V  D  C  I  G  G  L  G  L  R  *  W  V  Q  F  L  L  G  H  F  I  *  L  L  L  R  L  P  R  V  V  L  V  R  P  R  L  G  S  A  F  L  S  Q  L  R  L  R  *  P  V  L  L  L  D  *  A  Q  L  W  P  H  N  W  F  G  L  R  W  M  W  S  A  S  G  S  W  C  S  V  F  V  L  H  Q  H  P  V  N  I  S  M  G  L  M  L  F  D  E  S  S  R  Q  M  D  L  R  D  S  T  E  V  L  G  F  Q  F  *  H  M  P  H  P  M  H  C  G  G  H  P  T  P  S  L  S  G  L  S  G  V  G  M  D  V  T  S  A  R  M  V  M  T  E  L  R  I  T  S  K  V  L  *  S  L  I  R  R  L  L  *  W  F  R  E  *  V  Q  P  W  P  E  V  F  Q  R  *  L  Q  H  H  *  T  Q  S  R  Q  D  C  R  S  W  M  A  M  R  M  D  G  E  G  Q  Q  *  L  R  R  *  E  I  *  *  R  K  V  G  G  W  L  V  T  E  D  *  A  L  D  G  L  Q  C  P  C  L  Q  P  Q  *  S  L  L  M  N  S  S  N  A  S  P  Q  R  I  K  K  I  G  H  S  H  P  H  R  *  L  S  L  F  L  D  L  C  F  S  L  *  S  M  Y  K  F  S  F  *  M  I  L  F  *  E  S  V  C  *  V  *  T  *  K  K  P  K  S  R  T  K  R  M  M  N  V  Q  S  M  N  L  Y  I  *  S  T  S  L  N  L  F  G  C  C  Y  C  F  S  F  R  *  A  T  L  C  F  L  L  C  L  F  *  L  S  R  F  F  R  K  Q  P  L  H  L  N  E  V  G  I  S  S  V  H  S  T  S  S  Q  *  T  K  V  G  M  L  L  L  L  Y  *  A  I  C  L  L  T  D  V  R  L  L  F  L  P  S  R  T  I  L  F  R  E  W  S  Q  N  S  W  K  L  S  F  S  G  T  D  Q  I  V  R  *  E  S  V  V  G  L  I  D  F  *  L  I  S  T  N  G  R  *  D  S  A  *  S  *  C  *  F  E  H  V  A  C  T  K  V  L  A  Y  L  F  L  I  *  C  D  K  N  S  V  R  L  R  L  L  I  L  S  D  E  G  C  C  R  L  K  T  C  V  K  F  V  N  L  G  I  G  A  R  R  G  R  D  K  *  K  E  K  V  I  M  C  I  V  I  L  L  S  P  S  L  Y  Y  F  S  F  F  F  F  S  F  C  M  L  S  I  Y  R  K  *  Y  L  L  S  V  E  I  G  I  K  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49708" stop="49768"/>
                    <exon start="50144" stop="51057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHSTSKFTPIEYLRRDPRFSGVSAVLYPVVVLKTRQQVAQAHLSCFRTALSVVRLEGIRGLYRGFGTSLMGTIPARALYMTALEVTKSSVGTATVRLGIPEPTATALASAAAGLSAAVAAQLVWTPVDVVSQRLMVQRVCAAPASCKYLNGIDAFRRILKTDGPKGLYRGFGFSILTYAPSNALWWTSYTITQRLVWSGYGCYFSKNGDDRIEDNIKSTLKPDSKTVMMVQGVSAAMAGGVSALITTPLDTIKTRLQVLDGDENGRRGPTVAQTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSTKNQENWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49717" e_stop="49768"/>
            <exon e_start="49840" e_stop="49981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.196" e_score="0.865"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="49717" e_stop="49768" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.196">
            <gDNA_intron_boundary i_start="49769" i_stop="49839" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="49840" e_stop="49981" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49717" stop="49768"/>
              <exon start="49840" stop="49981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCG : AAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAA</gDNA_template>
            <first_frame> T  S  K  F  T  P  I  E  Y  L  R  R  D  P  R  F  S   : E  M  L  G  P  F  A  I  T  H  F  R  S  K  I  W  I  R  Q  R  K  K  S  L  P  S  P  S  S  F  N  L  V  D  *  T  L  I  C  T  V  H  F  P  E  G  I   </first_frame>
            <second_frame>  Q  A  S  S  L  R  L  N  I  S  A  E  I  L  D  F  P  :  K  C  *  V  L  L  L  L  P  I  S  D  P  K  Y  G  F  A  S  E  K  N  L  Y  L  L  H  L  A  S  I  *  *  I  R  R  *  F  V  L  Y  I  S  R  K  E  *  </second_frame>
            <third_frame>   K  Q  V  H  S  D  *  I  S  P  P  R  S  *  I  F  R :   N  V  R  S  F  C  Y  Y  P  F  P  I  Q  N  M  D  S  P  A  K  K  I  F  T  F  S  I  *  L  Q  F  S  R  L  D  V  D  L  Y  C  T  F  P  G  R  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0142A05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="50111" PGL_stop="49721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50111" e_stop="49721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="50111" e_stop="49721" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50111" stop="49721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGATTTGTCCAGCATTTGCCAGTCTACATCCGCCGGCAACTGGATTTCCTTACCCGATTCCTCCTCCGCTACACCTAAACTCATTTTCCCCAGTTTTCCTGTCTCGGTCTCAATTTTCACAAGATACTTTTATTCCTTCCGGGAAATGTACAGTACAAATCAACGTCTAATCTACTAAATTGAAGCTAGATGGAGAAGGTAAAGATTTTTTTCGCTGGCGAATCCATATTTTGGATCGGAAATGGGTAATAGCAAAAGGACCTAACATTTCTGTAATCGCATCATATGAGAAAGATTCATAATGGTCAACTATACAAATCGTAATAGATCGGAAAACTCACCGGAAAATCTAGGATCTCGGCGGAGATATTCAATCGGAGTGAACTTGC</gDNA_template>
            <first_frame> L  D  L  S  S  I  C  Q  S  T  S  A  G  N  W  I  S  L  P  D  S  S  S  A  T  P  K  L  I  F  P  S  F  P  V  S  V  S  I  F  T  R  Y  F  Y  S  F  R  E  M  Y  S  T  N  Q  R  L  I  Y  *  I  E  A  R  W  R  R  *  R  F  F  S  L  A  N  P  Y  F  G  S  E  M  G  N  S  K  R  T  *  H  F  C  N  R  I  I  *  E  R  F  I  M  V  N  Y  T  N  R  N  R  S  E  N  S  P  E  N  L  G  S  R  R  R  Y  S  I  G  V  N  L  </first_frame>
            <second_frame>  *  I  C  P  A  F  A  S  L  H  P  P  A  T  G  F  P  Y  P  I  P  P  P  L  H  L  N  S  F  S  P  V  F  L  S  R  S  Q  F  S  Q  D  T  F  I  P  S  G  K  C  T  V  Q  I  N  V  *  S  T  K  L  K  L  D  G  E  G  K  D  F  F  R  W  R  I  H  I  L  D  R  K  W  V  I  A  K  G  P  N  I  S  V  I  A  S  Y  E  K  D  S  *  W  S  T  I  Q  I  V  I  D  R  K  T  H  R  K  I  *  D  L  G  G  D  I  Q  S  E  *  T  C </second_frame>
            <third_frame>   R  F  V  Q  H  L  P  V  Y  I  R  R  Q  L  D  F  L  T  R  F  L  L  R  Y  T  *  T  H  F  P  Q  F  S  C  L  G  L  N  F  H  K  I  L  L  F  L  P  G  N  V  Q  Y  K  S  T  S  N  L  L  N  *  S  *  M  E  K  V  K  I  F  F  A  G  E  S  I  F  W  I  G  N  G  *  *  Q  K  D  L  T  F  L  *  S  H  H  M  R  K  I  H  N  G  Q  L  Y  K  S  *  *  I  G  K  L  T  G  K  S  R  I  S  A  E  I  F  N  R  S  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0142A05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="57281" PGL_stop="52261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57281" e_stop="57065"/>
            <exon e_start="56983" e_stop="56951"/>
            <exon e_start="54936" e_stop="54708"/>
            <exon e_start="53450" e_stop="53315"/>
            <exon e_start="53038" e_stop="52480"/>
            <exon e_start="52292" e_stop="52261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.528" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.993"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.781"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57281" e_stop="57065" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56983" e_stop="56951" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.528" acc_prob="0.988">
            <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54936" e_stop="54708" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="54707" i_stop="53451" i_length="1257"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="53450" e_stop="53315" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="53314" i_stop="53039" i_length="276"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="53038" e_stop="52480" e_length="559"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52479" i_stop="52293" i_length="187"/>
          </intron>
          <exon e_serial="6" e_score="0.781">
            <gDNA_exon_boundary e_start="52292" e_stop="52261" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57281" stop="57065"/>
              <exon start="56983" stop="56951"/>
              <exon start="54936" stop="54746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57269" stop="57065"/>
              <exon start="56983" stop="56951"/>
              <exon start="54936" stop="54708"/>
              <exon start="53450" stop="53315"/>
              <exon start="53038" stop="52965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57268" stop="57065"/>
              <exon start="56983" stop="56951"/>
              <exon start="54936" stop="54708"/>
              <exon start="53450" stop="53396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53037" stop="52480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53037" stop="52480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53037" stop="52661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53036" stop="52543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53036" stop="52576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52955" stop="52480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52882" stop="52480"/>
              <exon start="52292" stop="52261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52822" stop="52480"/>
              <exon start="52292" stop="52261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGGTAAGCGTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG : ATGTGGATGAATTTTATAAGCAGTGTGATCCTG : AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAG : GAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCAAACGCCACTAAG : AGGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC : CTATATGATTTTTTAGAAAAAAAATAGAAGAA</gDNA_template>
            <first_frame> E  L  V  S  V  L  S  N  S  L  K  L  S  S  S  S  L  I  *  F  L  T  T  L  L  V  T  A  E  V  V  F  N  Y  F  F  *  K  K  M  E  F  G  A  K  G  Q  K  K  A  K  P  I  D  V  F  K  N  V  K  G  R  Y  T  G  L  I  K  A  L  T  T   : D  V  D  E  F  Y  K  Q  C  D  P   : E  K  E  N  L  S  L  Y  G  L  P  N  E  R  W  E  V  N  L  P  A  E  D  S  P  P  G  L  P  E  P  V  L  G  I  N  F  A  R  E  G  M  E  Q  K  E  W  L  S  F  V  A  Y  H  S  D  S  W  L  L  A  I  A  F  Y  A  G  A  R  C  G  F  G  K  A  D  R :   K  K  L  F  D  M  I  N  D  L  P  S  I  H  E  V  V  I  G  V  P  K  T  Q  Q  K  E  K  P  T  V  A  N  Q  S  K  N  K  S  K  P  N  A  T  K  :  R  A  A  E  P  Q  D  M  F  T  K  M  Q  Q  K  Y  E  E  D  D  D  D  D  D  D  D  D  E  A  G  E  E  D  E  D  E  W  G  I  E  M  D  V  E  E  E  E  G  E  T  L  C  G  I  C  E  G  K  Y  A  K  D  E  F  W  I  C  C  D  H  C  E  T  W  F  H  G  Q  C  V  K  I  T  A  A  T  A  E  Y  M  K  Q  Y  K  C  P  P  C  S  S  K  R  A  R  T  H  F  T  E  Y  *  S  T  T  V  L  L  L  L  T  V  Y  S  *  C  F  A  K  M  S  E  V  *  N  *  S  *  T  L  L  R  L  T  S  V  V  T  S  K  V  V  P  N  *  V  D  V  P  K  F  Y  K  F  R  T  L  L  K  Q  *  H  Q  N  C  V  C  V  Y  S  P  T  P  P  N  F  K   : P  I  *  F  F  R  K  K  I  E  E </first_frame>
            <second_frame>  N  W  *  A  Y  Y  Q  I  L  S  N  F  L  L  L  L  S  Y  D  F  *  R  R  C  L  *  P  Q  K  W  C  L  I  I  F  F  K  K  R  W  N  L  E  L  K  D  R  R  R  Q  N  P  L  M  S  S  R  M  S  R  A  D  I  L  V  *  L  K  L  S  Q  Q  :  M  W  M  N  F  I  S  S  V  I  L  :  K  R  R  T  *  A  C  M  D  S  Q  M  S  D  G  R  S  I  C  L  L  K  I  H  H  Q  A  F  Q  S  L  F  L  V  S  T  L  L  E  R  E  W  N  K  R  S  G  F  L  L  L  L  I  T  V  I  L  G  C  L  L  L  P  S  T  L  V  L  D  V  D  L  V  K  P  T   : G  R  S  S  L  T  *  *  M  I  Y  L  Q  Y  M  K  *  *  L  V  F  Q  R  R  N  K  K  K  N  L  Q  S  L  I  K  V  K  T  N  P  S  Q  T  P  L  R :   G  Q  R  S  L  R  I  C  L  R  R  C  S  K  N  M  K  K  M  M  M  M  M  M  T  T  T  K  Q  E  K  K  M  R  M  N  G  V  L  R  W  M  L  K  R  R  K  V  R  H  C  A  A  Y  V  R  G  S  M  R  R  M  N  F  G  Y  V  A  I  I  V  K  H  G  S  T  A  S  V  L  R  S  P  L  P  Q  L  S  I  *  S  N  T  S  A  R  L  A  A  A  K  E  P  G  L  T  L  Q  N  T  D  Q  Q  Q  F  S  C  C  *  L  S  I  H  D  V  L  L  K  C  L  K  Y  E  T  E  V  R  L  C  *  D  *  L  Q  S  L  R  L  K  L  S  R  I  E  *  M  Y  Q  N  F  I  N  L  G  H  Y  L  N  S  D  T  K  I  V  S  V  C  T  P  Q  P  H  P  I  L  N  :  L  Y  D  F  L  E  K  K  *  K   </second_frame>
            <third_frame>   I  G  K  R  I  I  K  F  S  Q  T  F  F  F  F  S  H  M  I  F  D  D  A  A  C  N  R  R  S  G  V  *  L  F  F  L  K  K  D  G  I  W  S  *  R  T  E  E  G  K  T  H  *  C  L  Q  E  C  Q  G  Q  I  Y  W  S  N  *  S  S  H  N  R :   C  G  *  I  L  *  A  V  *  S  * :   K  G  E  L  K  L  V  W  T  P  K  *  A  M  G  G  Q  S  A  C  *  R  F  T  T  R  P  S  R  A  C  S  W  Y  Q  L  C  *  R  G  N  G  T  K  G  V  A  F  F  C  C  L  S  Q  *  F  L  V  A  C  Y  C  L  L  R  W  C  *  M  W  I  W  *  S  R  Q  :  E  E  A  L  *  H  D  K  *  F  T  F  N  T  *  S  S  D  W  C  S  K  D  A  T  K  R  K  T  Y  S  R  *  S  K  *  K  Q  I  Q  A  K  R  H  *   : E  G  S  G  A  S  G  Y  V  Y  E  D  A  A  K  I  *  R  R  *  *  *  *  *  *  R  R  R  S  R  R  R  R  *  G  *  M  G  Y  *  D  G  C  *  R  G  G  R  *  D  T  V  R  H  M  *  G  E  V  C  E  G  *  I  L  D  M  L  R  S  L  *  N  M  V  P  R  P  V  C  *  D  H  R  C  H  S  *  V  Y  E  A  I  Q  V  P  A  L  Q  Q  Q  K  S  P  D  S  L  Y  R  I  L  I  N  N  S  S  L  A  A  N  C  L  F  M  M  F  C  *  N  V  *  S  M  K  L  K  L  D  S  V  K  T  N  F  S  R  Y  V  *  S  C  P  E  L  S  R  C  T  K  I  L  *  I  *  D  I  T  *  T  V  T  P  K  L  C  L  C  V  L  P  N  P  T  Q  F  *  T :   Y  M  I  F  *  K  K  N  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57170" stop="57065"/>
                    <exon start="56983" stop="56951"/>
                    <exon start="54936" stop="54708"/>
                    <exon start="53450" stop="53315"/>
                    <exon start="53038" stop="52706"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMEFGAKGQKKAKPIDVFKNVKGRYTGLIKALTTDVDEFYKQCDPEKENLSLYGLPNERWEVNLPAEDSPPGLPEPVLGINFAREGMEQKEWLSFVAYHSDSWLLAIAFYAGARCGFGKADRKKLFDMINDLPSIHEVVIGVPKTQQKEKPTVANQSKNKSKPNATKRAAEPQDMFTKMQQKYEEDDDDDDDDDEAGEEDEDEWGIEMDVEEEEGETLCGICEGKYAKDEFWICCDHCETWFHGQCVKITAATAEYMKQYKCPPCSSKRARTHFTEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="52567" PGL_stop="52903"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52567" e_stop="52903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="52567" e_stop="52903" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52567" stop="52903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACATCTACTCAATTCGGGACAACTTTAGACGTAACGACTGAAGTTAGTCTTAACAGAGTCTAACTTCAGTTTCATACTTCAGACATTTTAGCAAAACATCATGAATAGACAGTTAGCAGCAAGAGAACTGTTGTTGATCAGTATTCTGTAAAGTGAGTCCGGGCTCTTTTGCTGCTGCAAGGCGGGCACTTGTATTGCTTCATATACTCAGCTGTGGCAGCGGTGATCTTAACACACTGGCCGTGGAACCATGTTTCACAATGATCGCAACATATCCAAAATTCATCCTTCGCATACTTCCCCTCACATATGCCGCACAGTGTCTCACCTTCCTC</gDNA_template>
            <first_frame> V  H  L  L  N  S  G  Q  L  *  T  *  R  L  K  L  V  L  T  E  S  N  F  S  F  I  L  Q  T  F  *  Q  N  I  M  N  R  Q  L  A  A  R  E  L  L  L  I  S  I  L  *  S  E  S  G  L  F  C  C  C  K  A  G  T  C  I  A  S  Y  T  Q  L  W  Q  R  *  S  *  H  T  G  R  G  T  M  F  H  N  D  R  N  I  S  K  I  H  P  S  H  T  S  P  H  I  C  R  T  V  S  H  L  P  </first_frame>
            <second_frame>  Y  I  Y  S  I  R  D  N  F  R  R  N  D  *  S  *  S  *  Q  S  L  T  S  V  S  Y  F  R  H  F  S  K  T  S  *  I  D  S  *  Q  Q  E  N  C  C  *  S  V  F  C  K  V  S  P  G  S  F  A  A  A  R  R  A  L  V  L  L  H  I  L  S  C  G  S  G  D  L  N  T  L  A  V  E  P  C  F  T  M  I  A  T  Y  P  K  F  I  L  R  I  L  P  L  T  Y  A  A  Q  C  L  T  F  L </second_frame>
            <third_frame>   T  S  T  Q  F  G  T  T  L  D  V  T  T  E  V  S  L  N  R  V  *  L  Q  F  H  T  S  D  I  L  A  K  H  H  E  *  T  V  S  S  K  R  T  V  V  D  Q  Y  S  V  K  *  V  R  A  L  L  L  L  Q  G  G  H  L  Y  C  F  I  Y  S  A  V  A  A  V  I  L  T  H  W  P  W  N  H  V  S  Q  *  S  Q  H  I  Q  N  S  S  F  A  Y  F  P  S  H  M  P  H  S  V  S  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52706" stop="52903"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVFCKVSPGSFAAARRALVLLHILSCGSGDLNTLAVEPCFTMIATYPKFILRILPLTYAAQCLTFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="62770" PGL_stop="58532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60995" e_stop="60547"/>
            <exon e_start="60408" e_stop="60337"/>
            <exon e_start="59027" e_stop="58923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60995" e_stop="60547" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60408" e_stop="60337" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="59027" e_stop="58923" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60995" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60995" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60994" stop="60641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT : GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG : GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</gDNA_template>
            <first_frame> Q  T  G  E  S  Y  L  F  L  A  L  L  L  W  G  V  M  P  L  H  P  H  L  S  I  E  R  Y  T  H  T  K  C  C  V  M  L  P  F  I  S  H  S  F  R  R  A  D  I  L  I  I  *  I  I  *  L  F  P  D  P  H  D  I  *  G  *  *  G  C  I  S  Y  L  A  Y  *  L  L  V  S  *  V  I  L  N  S  H  N  S  P  F  P  S  T  F  T  Y  F  F  S  D  F  C  I  F  L  L  *  S  C  G  Y  L  L  G  P  L  Q  A  V  L  E  V  V  G  S  P  M  I  P  K  V  C  Q  V  R  S  M  V  G  L  S  I  R  I  R  Q  I  L :   L  L  F  L  F  L  T  R  I  L  T  I  T  I  *  L  L  P  M  E  I  Q  P  W :   F  N  P  K  C  *  A  R  L  L  L  G  C  H  F  H  L  T  L  S  K  M  S  L  Y  L  S  M  L  N  N  I  R  L   </first_frame>
            <second_frame>  R  L  E  K  V  I  S  F  *  L  Y  C  F  G  A  *  C  L  Y  T  P  T  *  A  S  K  D  I  H  I  L  N  V  V  S  C  C  P  S  F  L  I  P  F  E  G  Q  T  F  L  L  S  K  S  S  S  Y  F  L  T  H  M  I  Y  K  V  D  E  V  V  F  P  I  W  L  T  S  C  *  *  V  K  L  F  *  I  A  T  T  L  L  F  P  Q  L  S  L  I  S  F  L  T  S  A  F  S  Y  S  D  R  V  D  I  C  L  D  H  S  R  Q  C  *  K  *  W  E  V  R  *  F  P  K  C  V  K  S  G  A  W  L  D  F  R  Y  V  S  D  K  F   : C  C  C  S  F  S  S  P  G  S  L  L  S  R  S  S  C  C  L  W  K  S  N  L   : G  S  I  P  N  V  R  H  G  C  S  S  G  A  T  S  T  *  P  *  A  R  *  A  Y  I  C  Q  C  *  T  I  S  G  Y  </second_frame>
            <third_frame>   D  W  R  K  L  S  L  S  S  F  I  A  L  G  R  N  A  F  T  P  P  L  K  H  R  K  I  Y  T  Y  *  M  L  C  H  A  A  L  H  F  S  F  L  S  K  G  R  H  S  Y  Y  L  N  H  L  A  I  S  *  P  T  *  Y  I  R  L  M  R  L  Y  F  L  F  G  L  L  A  V  S  E  L  S  Y  F  K  *  P  Q  L  S  F  S  L  N  F  H  L  F  L  F  *  L  L  H  F  L  T  L  I  V  W  I  S  A  W  T  T  P  G  S  V  R  S  S  G  K  S  D  D  S  Q  S  V  S  S  Q  E  H  G  W  T  F  D  T  Y  Q  T  N  F  :  A  V  V  P  F  P  H  P  D  P  Y  Y  H  D  L  V  A  A  Y  G  N  P  T  L  :  V  Q  S  Q  M  L  G  T  V  A  P  R  V  P  L  P  L  D  L  K  Q  D  E  P  I  F  V  N  A  K  Q  Y  Q  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60690" stop="60547"/>
                    <exon start="60408" stop="60337"/>
                    <exon start="59027" stop="58923"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHFLTLIVWISAWTTPGSVRSSGKSDDSQSVSSQEHGWTFDTYQTNFAVVPFPHPDPYYHDLVAAYGNPTLVQSQMLGTVAPRVPLPLDLKQDEPIFVNAKQYQAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61525" e_stop="61075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="61525" e_stop="61075" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61525" stop="61075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</gDNA_template>
            <first_frame> R  S  G  F  L  V  Y  S  I  N  E  S  I  M  S  *  S  S  *  *  T  R  N  K  N  P  W  *  K  Q  Y  F  F  A  S  R  *  G  Y  S  L  L  F  C  I  *  F  Y  I  Y  N  T  L  S  Y  V  R  E  V  L  K  Q  S  N  R  V  H  D  *  L  V  Y  N  F  L  P  Y  I  N  *  E  K  L  I  D  R  S  V  E  E  K  F  A  N  *  L  S  S  R  F  I  N  L  S  T  S  M  L  F  L  Q  M  *  S  V  T  T  F  *  M  W  W  I  V  G  S  C  *  P  A  K  E  A  P  Q  K  *  T  *  N  V  G  T  R  P  V  L  Q  I  G  </first_frame>
            <second_frame>  D  Q  D  S  S  S  T  Q  S  T  S  Q  S  C  P  E  A  P  N  E  R  E  T  K  I  H  G  K  N  N  I  S  L  R  A  G  E  D  I  H  Y  C  S  A  S  S  F  I  Y  T  T  L  *  V  M  S  E  K  F  *  N  K  V  I  V  F  M  I  S  L  F  I  T  F  Y  H  T  S  I  R  R  S  *  L  I  G  V  L  K  R  N  L  Q  I  D  C  L  V  G  L  S  I  *  V  L  P  C  C  S  S  K  C  D  R  L  Q  P  F  K  C  G  G  L  *  V  L  V  S  L  L  R  R  H  H  R  N  E  L  E  M  S  V  Q  G  L  Y  C  R  L  V </second_frame>
            <third_frame>   I  R  I  P  R  L  L  N  Q  R  V  N  H  V  L  K  L  L  M  N  E  K  Q  K  S  M  V  K  T  I  F  L  C  E  Q  V  R  I  F  T  I  V  L  H  L  V  L  Y  I  Q  H  F  K  L  C  Q  R  S  F  E  T  K  *  S  C  S  *  L  A  C  L  *  L  F  T  I  H  Q  L  G  E  A  N  *  *  E  C  *  R  E  I  C  K  L  I  V  *  *  V  Y  Q  F  K  Y  F  H  V  V  P  P  N  V  I  G  Y  N  L  L  N  V  V  D  C  R  F  L  L  A  C  *  G  G  T  T  E  M  N  L  K  C  R  Y  K  A  C  T  A  D  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0142A05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62760" e_stop="62665"/>
            <exon e_start="62241" e_stop="62209"/>
            <exon e_start="61595" e_stop="61419"/>
            <exon e_start="60638" e_stop="60547"/>
            <exon e_start="60408" e_stop="60337"/>
            <exon e_start="59027" e_stop="58860"/>
            <exon e_start="58636" e_stop="58532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="0.802"/>
          <exon-intron don_prob="0.000" acc_prob="0.886" e_score="0.606"/>
          <exon-intron don_prob="0.997" acc_prob="0.657" e_score="0.904"/>
          <exon-intron don_prob="0.720" acc_prob="0.984" e_score="0.978"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.964"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.802">
            <gDNA_exon_boundary e_start="62760" e_stop="62665" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="62664" i_stop="62242" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="0.606">
            <gDNA_exon_boundary e_start="62241" e_stop="62209" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.886">
            <gDNA_intron_boundary i_start="62208" i_stop="61596" i_length="613"/>
          </intron>
          <exon e_serial="3" e_score="0.904">
            <gDNA_exon_boundary e_start="61595" e_stop="61419" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.657">
            <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="60638" e_stop="60547" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.720" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.917">
            <gDNA_exon_boundary e_start="60408" e_stop="60337" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309"/>
          </intron>
          <exon e_serial="6" e_score="0.964">
            <gDNA_exon_boundary e_start="59027" e_stop="58860" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58859" i_stop="58637" i_length="223"/>
          </intron>
          <exon e_serial="7" e_score="0.895">
            <gDNA_exon_boundary e_start="58636" e_stop="58532" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62760" stop="62665"/>
              <exon start="62241" stop="62209"/>
              <exon start="61595" stop="61419"/>
              <exon start="60638" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58860"/>
              <exon start="58636" stop="58532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAA : CTTTGTGAATGTAAGTGTCAGAAACCCAAAAAT : ATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAG : GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT : GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG : GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATCCTCAGGCGTAGACAATACCGTGCTAGGCTGGAAGCTCAAAACAAACTCTCTAAAGGACGGAAG : CCATATCTCCATGAGTCCCGGCACCGGCATGCATTGAATAGGGCTAGGGGACCTGGTGGACGCTTTGTCAACATGAAGAAGCCTGGAGAGTCCAAATCCCCCGAT</gDNA_template>
            <first_frame> I  V  V  F  C  I  Q  R  D  W  T  W  T  S  F  T  T  K  D  S  E  V  L  E  F  *  V  W  F  N  H  K  :  L  C  E  C  K  C  Q  K  P  K  N  :  I  Y  R  C  N  K  C  L  H  F  L  V  L  R  I  P  R  N  *  I  T  I  F  K  I  R  I  P  R  L  L  N  Q  R  V  N  H  V  L  K  L  L  M  N  E  K  Q  K  S  M  V  K  T  I  F  L  C  E  Q  :  A  V  L  E  V  V  G  S  P  M  I  P  K  V  C  Q  V  R  S  M  V  G  L  S  I  R  I  R  Q  I  L :   L  L  F  L  F  L  T  R  I  L  T  I  T  I  *  L  L  P  M  E  I  Q  P  W :   F  N  P  K  C  *  A  R  L  L  L  G  C  H  F  H  L  T  L  S  K  M  S  L  Y  L  S  M  L  N  N  I  R  L  S  S  G  V  D  N  T  V  L  G  W  K  L  K  T  N  S  L  K  D  G  S :   H  I  S  M  S  P  G  T  G  M  H  *  I  G  L  G  D  L  V  D  A  L  S  T  *  R  S  L  E  S  P  N  P  P   </first_frame>
            <second_frame>  L  W  C  S  V  Y  R  E  T  G  L  G  L  L  L  P  P  K  I  Q  R  C  L  N  S  E  F  G  S  T  I  N :   F  V  N  V  S  V  R  N  P  K  I :   F  T  D  A  T  N  V  Y  I  S  W  S  S  E  Y  Q  G  T  E  S  P  F  S  R  S  G  F  L  V  Y  S  I  N  E  S  I  M  S  *  S  S  *  *  T  R  N  K  N  P  W  *  K  Q  Y  F  F  A  S  R :   Q  C  *  K  *  W  E  V  R  *  F  P  K  C  V  K  S  G  A  W  L  D  F  R  Y  V  S  D  K  F   : C  C  C  S  F  S  S  P  G  S  L  L  S  R  S  S  C  C  L  W  K  S  N  L   : G  S  I  P  N  V  R  H  G  C  S  S  G  A  T  S  T  *  P  *  A  R  *  A  Y  I  C  Q  C  *  T  I  S  G  Y  P  Q  A  *  T  I  P  C  *  A  G  S  S  K  Q  T  L  *  R  T  E   : A  I  S  P  *  V  P  A  P  A  C  I  E  *  G  *  G  T  W  W  T  L  C  Q  H  E  E  A  W  R  V  Q  I  P  R  </second_frame>
            <third_frame>   C  G  V  L  Y  T  E  R  L  D  L  D  F  F  Y  H  Q  R  F  R  G  A  *  I  L  S  L  V  Q  P  *   : T  L  *  M  *  V  S  E  T  Q  K   : Y  L  Q  M  Q  Q  M  S  T  F  P  G  P  Q  N  T  K  E  L  N  H  H  F  Q  D  Q  D  S  S  S  T  Q  S  T  S  Q  S  C  P  E  A  P  N  E  R  E  T  K  I  H  G  K  N  N  I  S  L  R  A   : G  S  V  R  S  S  G  K  S  D  D  S  Q  S  V  S  S  Q  E  H  G  W  T  F  D  T  Y  Q  T  N  F  :  A  V  V  P  F  P  H  P  D  P  Y  Y  H  D  L  V  A  A  Y  G  N  P  T  L  :  V  Q  S  Q  M  L  G  T  V  A  P  R  V  P  L  P  L  D  L  K  Q  D  E  P  I  F  V  N  A  K  Q  Y  Q  A  I  L  R  R  R  Q  Y  R  A  R  L  E  A  Q  N  K  L  S  K  G  R  K  :  P  Y  L  H  E  S  R  H  R  H  A  L  N  R  A  R  G  P  G  G  R  F  V  N  M  K  K  P  G  E  S  K  S  P  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62227" stop="62209"/>
                    <exon start="61595" stop="61419"/>
                    <exon start="60638" stop="60547"/>
                    <exon start="60408" stop="60337"/>
                    <exon start="59027" stop="58860"/>
                    <exon start="58636" stop="58532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSETQKYLQMQQMSTFPGPQNTKELNHHFQDQDSSSTQSTSQSCPEAPNERETKIHGKNNISLRAGSVRSSGKSDDSQSVSSQEHGWTFDTYQTNFAVVPFPHPDPYYHDLVAAYGNPTLVQSQMLGTVAPRVPLPLDLKQDEPIFVNAKQYQAILRRRQYRARLEAQNKLSKGRKPYLHESRHRHALNRARGPGGRFVNMKKPGESKSPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62770" e_stop="62646"/>
            <exon e_start="61595" e_stop="61419"/>
            <exon e_start="60638" e_stop="60547"/>
            <exon e_start="60408" e_stop="60337"/>
            <exon e_start="59027" e_stop="58933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62770" e_stop="62646" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.886">
            <gDNA_intron_boundary i_start="62645" i_stop="61596" i_length="1050"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61595" e_stop="61419" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.657">
            <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60638" e_stop="60547" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.720" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60408" e_stop="60337" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="59027" e_stop="58933" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62770" stop="62646"/>
              <exon start="61595" stop="61419"/>
              <exon start="60638" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAG : ATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAG : GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT : GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG : GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</gDNA_template>
            <first_frame> A  A  K  Y  C  G  V  L  Y  T  E  R  L  D  L  D  F  F  Y  H  Q  R  F  R  G  A  *  I  L  S  L  V  Q  P  *  S  F  T  K  S  T  R :   F  T  D  A  T  N  V  Y  I  S  W  S  S  E  Y  Q  G  T  E  S  P  F  S  R  S  G  F  L  V  Y  S  I  N  E  S  I  M  S  *  S  S  *  *  T  R  N  K  N  P  W  *  K  Q  Y  F  F  A  S  R :   Q  C  *  K  *  W  E  V  R  *  F  P  K  C  V  K  S  G  A  W  L  D  F  R  Y  V  S  D  K  F   : C  C  C  S  F  S  S  P  G  S  L  L  S  R  S  S  C  C  L  W  K  S  N  L   : G  S  I  P  N  V  R  H  G  C  S  S  G  A  T  S  T  *  P  *  A  R  *  A  Y  I  C  Q  C  *  T  I </first_frame>
            <second_frame>  Q  P  N  I  V  V  F  C  I  Q  R  D  W  T  W  T  S  F  T  T  K  D  S  E  V  L  E  F  *  V  W  F  N  H  K  V  S  L  N  Q  Q   : D  L  Q  M  Q  Q  M  S  T  F  P  G  P  Q  N  T  K  E  L  N  H  H  F  Q  D  Q  D  S  S  S  T  Q  S  T  S  Q  S  C  P  E  A  P  N  E  R  E  T  K  I  H  G  K  N  N  I  S  L  R  A   : G  S  V  R  S  S  G  K  S  D  D  S  Q  S  V  S  S  Q  E  H  G  W  T  F  D  T  Y  Q  T  N  F  :  A  V  V  P  F  P  H  P  D  P  Y  Y  H  D  L  V  A  A  Y  G  N  P  T  L  :  V  Q  S  Q  M  L  G  T  V  A  P  R  V  P  L  P  L  D  L  K  Q  D  E  P  I  F  V  N  A  K  Q   </second_frame>
            <third_frame>   S  Q  I  L  W  C  S  V  Y  R  E  T  G  L  G  L  L  L  P  P  K  I  Q  R  C  L  N  S  E  F  G  S  T  I  K  F  H  *  I  N  K  :  I  Y  R  C  N  K  C  L  H  F  L  V  L  R  I  P  R  N  *  I  T  I  F  K  I  R  I  P  R  L  L  N  Q  R  V  N  H  V  L  K  L  L  M  N  E  K  Q  K  S  M  V  K  T  I  F  L  C  E  Q  :  A  V  L  E  V  V  G  S  P  M  I  P  K  V  C  Q  V  R  S  M  V  G  L  S  I  R  I  R  Q  I  L :   L  L  F  L  F  L  T  R  I  L  T  I  T  I  *  L  L  P  M  E  I  Q  P  W :   F  N  P  K  C  *  A  R  L  L  L  G  C  H  F  H  L  T  L  S  K  M  S  L  Y  L  S  M  L  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62682" stop="62646"/>
                    <exon start="61595" stop="61419"/>
                    <exon start="60638" stop="60547"/>
                    <exon start="60408" stop="60337"/>
                    <exon start="59027" stop="58935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFNHKVSLNQQDLQMQQMSTFPGPQNTKELNHHFQDQDSSSTQSTSQSCPEAPNERETKIHGKNNISLRAGSVRSSGKSDDSQSVSSQEHGWTFDTYQTNFAVVPFPHPDPYYHDLVAAYGNPTLVQSQMLGTVAPRVPLPLDLKQDEPIFVNAKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="69890" PGL_stop="62935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69890" e_stop="69695"/>
            <exon e_start="68645" e_stop="68521"/>
            <exon e_start="68364" e_stop="68295"/>
            <exon e_start="68181" e_stop="68148"/>
            <exon e_start="67013" e_stop="66697"/>
            <exon e_start="66568" e_stop="66422"/>
            <exon e_start="65603" e_stop="65511"/>
            <exon e_start="65365" e_stop="65303"/>
            <exon e_start="64100" e_stop="63736"/>
            <exon e_start="63612" e_stop="63576"/>
            <exon e_start="62942" e_stop="62935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.775" acc_prob="0.671" e_score="0.960"/>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="0.914"/>
          <exon-intron don_prob="0.742" acc_prob="0.579" e_score="0.912"/>
          <exon-intron don_prob="0.998" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.898" acc_prob="0.572" e_score="0.459"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="69890" e_stop="69695" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="0.994">
            <gDNA_intron_boundary i_start="69694" i_stop="68646" i_length="1049"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="68645" e_stop="68521" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.775" acc_prob="0.671">
            <gDNA_intron_boundary i_start="68520" i_stop="68365" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="68364" e_stop="68295" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68294" i_stop="68182" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.912">
            <gDNA_exon_boundary e_start="68181" e_stop="68148" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.742" acc_prob="0.579">
            <gDNA_intron_boundary i_start="68147" i_stop="67014" i_length="1134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67013" e_stop="66697" e_length="317"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.923">
            <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66568" e_stop="66422" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.821" acc_prob="0.985">
            <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65603" e_stop="65511" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65365" e_stop="65303" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="64100" e_stop="63736" e_length="365"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63735" i_stop="63613" i_length="123"/>
          </intron>
          <exon e_serial="10" e_score="0.459">
            <gDNA_exon_boundary e_start="63612" e_stop="63576" e_length="37"/>
          </exon>
          <intron i_serial="10" don_prob="0.898" acc_prob="0.572">
            <gDNA_intron_boundary i_start="63575" i_stop="62943" i_length="633"/>
          </intron>
          <exon e_serial="11" e_score="0.500">
            <gDNA_exon_boundary e_start="62942" e_stop="62935" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69890" stop="69695"/>
              <exon start="68645" stop="68521"/>
              <exon start="68364" stop="68295"/>
              <exon start="68181" stop="68148"/>
              <exon start="67013" stop="66766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66917" stop="66697"/>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66875" stop="66697"/>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
              <exon start="64100" stop="63861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66744" stop="66697"/>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
              <exon start="64100" stop="63896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66726" stop="66697"/>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
              <exon start="64100" stop="63895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
              <exon start="64100" stop="63736"/>
              <exon start="63612" stop="63576"/>
              <exon start="62942" stop="62935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACCAGATTTTCAGCAGTTGTTAGAGGGGTTGATGATAGTGGATATGGTGATTGTGAGGACATACTGTTGGATTCACGTAATGATGAAACATTTCAATGTATCTCTAGTTCTTCTATGGGAAAGTCATTCACTGGTATGAGTGTTGGGGAAGTTGTTGATGGTGTGGAATTCTCATCAAGATCTTCCTCTTTG : GATGAATTGCAATCCTCTCAGTTGAGTACCAGCAGGGATGTCTATCAGACTTACTATGATGATCATAGCAAACAGTCATCAGCTAAACATGTTCCTCAAAGTGCCTCAAAGATGGATGAGAGCAG : GGGGCACAAGATCACTTTCAATGAACATGATGGAGCTAGTTGCAATGACGAGGAGACGAGAATGCAAATG : TTAGCTGAAGGGGCGCATACATCGATACCCGAAG : ATTCAAAGTCATCACTAAGAGTGAAAATGGAAACCTTGGATAAGGGTGTGTCATCTATGAATGTCTCTGCATTGGCCCCCGTTCCTGAATTCCAGGAAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAG : GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG : GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG : TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT : GAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAACTTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACATGATA : TGTTAAAGAAGAGGAGGCATAGATAGATAGTCCTTTG : AGGAAGAG</gDNA_template>
            <first_frame> R  N  Q  I  F  S  S  C  *  R  G  *  *  *  W  I  W  *  L  *  G  H  T  V  G  F  T  *  *  *  N  I  S  M  Y  L  *  F  F  Y  G  K  V  I  H  W  Y  E  C  W  G  S  C  *  W  C  G  I  L  I  K  I  F  L  F   : G  *  I  A  I  L  S  V  E  Y  Q  Q  G  C  L  S  D  L  L  *  *  S  *  Q  T  V  I  S  *  T  C  S  S  K  C  L  K  D  G  *  E  Q  :  G  A  Q  D  H  F  Q  *  T  *  W  S  *  L  Q  *  R  G  D  E  N  A  N   : V  S  *  R  G  A  Y  I  D  T  R  R :   F  K  V  I  T  K  S  E  N  G  N  L  G  *  G  C  V  I  Y  E  C  L  C  I  G  P  R  S  *  I  P  G  K  D  H  R  F  F  *  *  K  G  G  C  W  V  F  Q  E  S  R  Q  H  P  I  C  *  F  L  C  *  T  *  Q  F  C  F  I  F  Y  *  *  S  R  C  C  I  *  Q  W  I  I  T  *  L  F  R  E  F  I  I  F  R  K  I  H  E  V  H  I  K  S  T  C  *   : G  I  *  I  *  S  Q  C  K  E  L  C  P  I  S  S  D  F  E  A  D  I  S  S  V  *  *  F  L  L  L  S  S  W  D  G  C  Y  A  T  H  A  W  H  V  Y  G  L  R   : G  W  S  I  V  C  W  T  S  V  C  C  I  *  S  T  G  Y  P  C  A  T  A  I  F  S  S  K  W  T  S   : V  W  T  A  D  D  D  W  S  P  S  A  S  C  L  H  A  N  L  S  P   : *  V  T  V  Q  G  K  G  R  V  L  T  S  S  W  *  S  A  L  L  G  G  L  T  L  C  *  Y  W  K  Q  N  S  D  S  R  L  H  G  S  F  V  G  A  L  I  L  L  I  K  *  L  Q  S  A  P  A  G  *  N  G  F  V  S  T  P  V  *  *  R  I  N  Y  S  A  F  H  N  R  S  V  L  A  L  R  C  S  L  S  S  Y  Y  R  L  F  F  I  F  W  V  S  S  T  F  F  F  P  W  K  I  F  N  Q  P  P  I  L  S  Y  Y  M  I  :  C  *  R  R  G  G  I  D  R  *  S  F   : E  E  E </first_frame>
            <second_frame>  E  T  R  F  S  A  V  V  R  G  V  D  D  S  G  Y  G  D  C  E  D  I  L  L  D  S  R  N  D  E  T  F  Q  C  I  S  S  S  S  M  G  K  S  F  T  G  M  S  V  G  E  V  V  D  G  V  E  F  S  S  R  S  S  S  L  :  D  E  L  Q  S  S  Q  L  S  T  S  R  D  V  Y  Q  T  Y  Y  D  D  H  S  K  Q  S  S  A  K  H  V  P  Q  S  A  S  K  M  D  E  S  R :   G  H  K  I  T  F  N  E  H  D  G  A  S  C  N  D  E  E  T  R  M  Q  M  :  L  A  E  G  A  H  T  S  I  P  E   : D  S  K  S  S  L  R  V  K  M  E  T  L  D  K  G  V  S  S  M  N  V  S  A  L  A  P  V  P  E  F  Q  E  K  I  T  G  S  F  S  E  K  G  A  V  G  S  S  K  S  R  D  N  T  R  S  V  N  S  C  V  R  P  S  S  S  A  L  S  S  I  D  R  A  G  A  A  S  S  N  G  L  S  R  S  S  S  V  S  S  L  S  S  E  K  S  T  K  S  T  L  N  P  H  A  K  :  E  F  K  F  N  P  S  A  K  S  F  V  P  S  Q  A  T  L  R  P  T  S  P  V  S  D  N  S  F  Y  Y  P  A  G  M  A  A  M  P  H  M  H  G  M  S  M  G  L  G  :  V  G  P  S  F  A  G  H  Q  S  V  V  Y  N  P  Q  G  T  P  V  P  Q  P  Y  F  H  P  N  G  P  Q  :  Y  G  Q  Q  M  M  I  G  H  P  R  Q  V  V  Y  M  P  T  Y  P  P  :  E  S  P  Y  K  G  R  G  E  Y  *  P  V  L  G  D  L  H  C  L  V  A  *  P  F  A  D  I  G  N  K  I  L  T  V  D  C  M  D  H  L  L  V  H  *  F  F  *  *  N  S  C  N  L  H  L  L  A  E  M  V  L  L  A  L  L  Y  N  D  E  L  I  I  L  L  F  I  I  V  V  F  *  L  L  G  V  L  C  H  H  T  T  D  Y  F  S  S  F  G  F  L  Q  L  F  F  F  L  G  K  Y  L  T  S  L  L  Y  C  L  I  T  *  Y :   V  K  E  E  E  A  *  I  D  S  P  L  :  R  K   </second_frame>
            <third_frame>   K  P  D  F  Q  Q  L  L  E  G  L  M  I  V  D  M  V  I  V  R  T  Y  C  W  I  H  V  M  M  K  H  F  N  V  S  L  V  L  L  W  E  S  H  S  L  V  *  V  L  G  K  L  L  M  V  W  N  S  H  Q  D  L  P  L  W :   M  N  C  N  P  L  S  *  V  P  A  G  M  S  I  R  L  T  M  M  I  I  A  N  S  H  Q  L  N  M  F  L  K  V  P  Q  R  W  M  R  A   : G  G  T  R  S  L  S  M  N  M  M  E  L  V  A  M  T  R  R  R  E  C  K  C :   *  L  K  G  R  I  H  R  Y  P  K  :  I  Q  S  H  H  *  E  *  K  W  K  P  W  I  R  V  C  H  L  *  M  S  L  H  W  P  P  F  L  N  S  R  K  R  S  Q  V  L  L  V  K  R  G  L  L  G  L  P  R  V  E  T  T  P  D  L  L  I  L  V  L  D  L  A  V  L  L  Y  L  L  L  I  E  Q  V  L  H  L  A  M  D  Y  H  V  A  L  P  *  V  H  Y  L  Q  K  N  P  R  S  P  H  *  I  H  M  L  R :   N  L  N  L  I  P  V  Q  R  A  L  S  H  L  K  R  L  *  G  R  H  L  Q  C  L  I  I  P  S  T  I  Q  L  G  W  L  L  C  H  T  C  M  A  C  L  W  A  *  G :   L  V  H  R  L  L  D  I  S  L  L  Y  I  I  H  R  V  P  L  C  H  S  H  I  F  I  Q  M  D  L  S :   M  D  S  R  *  *  L  V  T  L  G  K  L  S  T  C  Q  L  I  P  L :   S  H  R  T  R  E  G  E  S  I  D  Q  F  L  V  I  C  I  A  W  W  L  N  P  L  L  I  L  E  T  K  F  *  Q  *  I  A  W  I  I  C  W  C  I  N  S  S  D  K  I  A  A  I  C  T  C  W  L  K  W  F  C  *  H  S  C  I  M  T  N  *  L  F  C  F  S  *  S  *  C  S  S  S  *  V  F  F  V  I  I  L  Q  I  I  F  H  L  L  G  F  F  N  F  F  F  S  L  E  N  I  *  P  A  S  Y  I  V  L  L  H  D   : M  L  K  K  R  R  H  R  *  I  V  L  * :   G  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69889" stop="69695"/>
                    <exon start="68645" stop="68521"/>
                    <exon start="68364" stop="68295"/>
                    <exon start="68181" stop="68148"/>
                    <exon start="67013" stop="66697"/>
                    <exon start="66568" stop="66422"/>
                    <exon start="65603" stop="65511"/>
                    <exon start="65365" stop="65303"/>
                    <exon start="64100" stop="64068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETRFSAVVRGVDDSGYGDCEDILLDSRNDETFQCISSSSMGKSFTGMSVGEVVDGVEFSSRSSSLDELQSSQLSTSRDVYQTYYDDHSKQSSAKHVPQSASKMDESRGHKITFNEHDGASCNDEETRMQMLAEGAHTSIPEDSKSSLRVKMETLDKGVSSMNVSALAPVPEFQEKITGSFSEKGAVGSSKSRDNTRSVNSCVRPSSSALSSIDRAGAASSNGLSRSSSVSSLSSEKSTKSTLNPHAKEFKFNPSAKSFVPSQATLRPTSPVSDNSFYYPAGMAAMPHMHGMSMGLGVGPSFAGHQSVVYNPQGTPVPQPYFHPNGPQYGQQMMIGHPRQVVYMPTYPPESPYKGRGEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="82350" PGL_stop="72122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82350" e_stop="81813"/>
            <exon e_start="80446" e_stop="80224"/>
            <exon e_start="80104" e_stop="79824"/>
            <exon e_start="79264" e_stop="78937"/>
            <exon e_start="77143" e_stop="76887"/>
            <exon e_start="76240" e_stop="75363"/>
            <exon e_start="74957" e_stop="74943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="82350" e_stop="81813" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80446" e_stop="80224" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80104" e_stop="79824" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="79264" e_stop="78937" e_length="328"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="77143" e_stop="76887" e_length="257"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="76240" e_stop="75363" e_length="878"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75362" i_stop="74958" i_length="405"/>
          </intron>
          <exon e_serial="7" e_score="0.933">
            <gDNA_exon_boundary e_start="74957" e_stop="74943" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82350" stop="81960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82271" stop="81813"/>
              <exon start="80446" stop="80224"/>
              <exon start="80104" stop="79824"/>
              <exon start="79264" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="75363"/>
              <exon start="74957" stop="74943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81882" stop="81813"/>
              <exon start="80446" stop="80224"/>
              <exon start="80104" stop="79824"/>
              <exon start="79264" stop="79100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80005" stop="79824"/>
              <exon start="79264" stop="78937"/>
              <exon start="77143" stop="77098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79102" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="76036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79051" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="76083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77108" stop="76887"/>
              <exon start="76240" stop="75616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77067" stop="76887"/>
              <exon start="76240" stop="75668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76189" stop="75739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="75471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75695" stop="75397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG : ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG : GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG : GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGG : GATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA : GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTT : AAAAAAAAAAAAAAG</gDNA_template>
            <first_frame> F  S  R  C  R  R  R  L  P  V  V  S  V  L  I  E  Y  R  K  L  S  P  Y  V  M  L  I  E  V  K  *  K  I  K  R  C  R  Y  Y  E  E  E  K  H  L  K  M  K  F  N  R  M  W  S  Q  S  L  M  R  K  K  T  I  R  R  V  G  R  R  M  *  S  L  E  R  R  R  N  G  R  V  S  I  I  A  V  G  S  *  D  A  Y  V  V  C  G  G  F  C  C  F  Y  T  M  L  C  R  R  R  S  R  S  M  L  R  R  R  L  Q  A  R  Y  L  I  H  R  A  S  S  C  R  R  K  G  *  R  L  S  I  R  W  Y  L  F  L  E  L  S  R  V  D  L  N  C  G  K  D  I  S  V  L  K  D  C  F  G  S  G  F  G  A  G  L  L  E  K  C  T  K   : D  H  Y  A  G  *  T  T  *  H  *  I  M  K  L  G  W  I  L  L  V  L  E  L  G  Q  L  V  D  L  L  L  Q  I  T  L  L  Q  D  T  L  S  G  Q  F  *  L  L  T  W  L  E  L  D  T  R  R  K  P  C  I  W  L  H  M  I  G  G  L  P  F  R  T  P  R :   C  E  T  R  P  *  V  G  *  K  A  I  *  N  *  W  L  Q  P  V  A  R  R  Q  *  L  F  H  I  P  W  G  L  Y  T  F  C  I  L  *  S  G  W  R  H  Q  L  L  W  V  V  V  V  D  P  I  G  A  P  S  T  L  K  L  *  *  I  L  V  G  H  C  *  V  F  Q  N  L  *  L  A  F  S  Q  L  K  H  G  I  L  L  L  P   : G  L  W  L  Q  V  F  W  T  R  I  C  S  I  F  K  H  *  S  T  *  *  R  C  H  E  P  G  M  Q  P  C  Q  *  Y  Q  E  E  G  T  R  S  G  A  V  L  N  G  H  P  R  K  A  I  L  L  A  E  V  S  P  E  T  M  L  L  R  I  Q  D  I  T  R  I  K  L  Q  I  L  K  Q  N  I  T  V  M  E  G  *  C  P  L  E  R  M  Q  Q  K  L  I  H  Q  I  L  R  G  L  T  S  G :   M  L  L  R  A  V  M  L  Q  I  T  P  V  M  C  G  T  S  T  K  T  W  V  L  V  A  L  K  Q  W  K  S  T  R  F  I  Q  L  E  R  L  W  I  C  S  T  L  L  P  R  K  *  W  P  V  V  M  L  T  F  H  M  G  *  L  M  I  W  M  I  L  S  I  H  T  T  N  I  G  Q  I  H  W  R  Q   : S  Y  Q  M  L  L  T  W  R  S  I  H  C  M  E  L  A  L  K  L  K  E  H  M  F  T  S  G  Y  L  Q  Q  D  A  I  F  H  S  R  L  I  L  Q  L  M  I  M  M  K  V  A  A  *  N  L  V  F  T  R  *  M  V  M  R  L  C  L  H  *  A  Q  D  S  C  V  Q  K  D  G  E  E  K  L  D  L  I  P  L  V  S  K  L  I  *  G  S  I  F  M  L  P  L  Q  T  F  L  R  V  V  V  H  R  V  V  H  M  L  I  *  W  E  I  S  L  *  *  R  M  *  *  E  L  L  L  V  E  Q  V  K  T  W  E  V  I  K  F  T  Q  I  S  S  S  G  L  R  R  S  I  Y  V  C  D  Y  L  S  K  L  T  S  F  I  V  S  T  Y  Q  L  D  M  L  F  M  N  L  H  T  L  S  T  G  C  H  S  N  I  Q  K  *  T  G  I  F  P  D  I  V  Q  D  L  L  L  P  V  V  *  I  V  T  L  T  Q  L  I  S  L  C  N  N  K  E  *  *  V  C  S  R  D  *  V  *  C  C  T  I  K  A  Y  N  *  Q  C  K  *  K  L  S  Y  Y  R  C  S  S  S  T  F  Y  L  S  I  S  T  F  Y  L  S  L  F  A  Y  F  *  Q  I  K  K  R  L  I  F  F  L  P  F  :  K  K  K  K  K </first_frame>
            <second_frame>  S  A  V  A  G  G  G  F  R  W  S  L  F  L  *  N  I  G  S  S  L  R  M  L  C  *  L  K  *  N  K  R  *  R  D  V  V  I  T  K  K  K  S  T  *  K  *  N  S  T  G  C  G  A  K  A  *  C  G  R  R  R  *  E  E  *  E  E  E  C  E  V  W  K  E  E  E  M  V  V  Y  R  *  L  L  L  V  R  R  M  H  M  L  C  V  V  D  F  V  V  F  I  Q  C  Y  A  G  V  V  P  A  V  C  Y  G  G  D  Y  R  P  V  T  *  S  T  G  H  Q  V  A  E  G  R  V  E  G  *  A  S  G  G  I  Y  S  W  N  C  H  V  W  T  *  T  V  G  R  T  S  V  C  *  R  I  V  S  E  A  A  L  G  R  D  F  W  R  S  V  Q  K  :  T  T  M  L  G  E  P  H  D  I  R  *  *  N  W  D  G  S  S  W  Y  *  S  *  A  S  *  W  T  C  C  C  R  L  L  C  S  R  I  L  C  L  G  S  F  D  C  *  L  G  S  N  W  I  R  G  E  N  H  V  Y  G  C  I  *  L  E  A  C  L  S  E  H  R   : G  A  R  P  D  P  K  S  D  K  K  Q  Y  R  T  D  G  C  N  Q  W  Q  E  G  S  N  C  S  T  F  H  G  G  C  I  L  F  A  F  Y  E  V  G  G  G  T  S  S  C  G  W  W  W  W  T  R  L  V  R  Q  A  H  *  S  C  D  E  Y  W  W  A  I  A  R  C  S  K  I  Y  S  W  P  F  L  S  *  S  T  G  Y  C  C  C  Q  :  G  S  G  S  R  C  S  G  H  G  Y  V  P  S  S  N  I  R  A  H  N  E  D  V  T  N  L  G  C  N  H  V  N  D  T  K  R  R  G  H  D  L  G  R  S  *  M  V  T  R  G  R  L  F  S  L  Q  K  *  V  Q  R  R  C  C  S  E  F  R  T  S  R  E  S  N  Y  R  F  *  S  K  I  L  Q  L  W  K  D  D  V  L  W  K  G  C  S  R  S  S  S  I  R  S  *  E  D  *  L  Q   : G  C  C  *  G  Q  *  C  C  K  *  H  L  *  C  V  E  R  V  P  R  H  G  C  *  W  H  *  S  S  G  R  V  Q  G  L  Y  S  W  R  D  C  G  F  A  Q  L  C  C  P  E  N  D  G  P  W  *  C  S  L  F  I  W  D  S  *  *  F  G  *  S  *  V  F  T  L  Q  I  L  V  K  S  I  G  D  K  :  V  T  K  C  S  *  H  G  D  L  F  T  V  W  S  W  H  *  N  *  K  S  I  C  L  Q  A  D  T  Y  S  R  M  Q  Y  S  I  P  D  *  Y  F  S  *  *  *  *  *  R  *  L  L  E  I  W  C  L  H  G  R  W  *  *  D  C  A  C  I  K  R  R  I  H  V  C  K  R  M  A  R  K  N  *  I  *  S  L  W  Y  Q  N  L  Y  K  G  V  F  S  C  S  P  C  K  P  S  *  G  S  W  Y  T  E  W  C  T  C  *  Y  N  G  K  F  R  F  D  R  G  C  N  E  S  C  C  W  W  N  K  *  K  L  G  R  *  S  S  L  L  R  Y  L  Q  V  V  *  E  D  Q  F  T  F  V  I  I  C  R  N  S  P  V  S  L  C  Q  H  T  S  L  T  C  Y  L  *  T  Y  I  P  F  P  L  D  A  I  Q  I  F  R  N  E  Q  V  F  F  Q  I  *  C  R  I  Y  Y  F  R  W  C  K  L  *  H  *  R  S  S  S  R  Y  A  T  T  K  N  N  R  C  V  V  G  I  E  F  D  V  V  P  L  K  L  I  I  S  S  V  S  E  S  C  R  T  T  G  V  H  P  L  H  F  I  C  P  F  R  L  F  I  C  P  F  L  L  I  F  D  K  *  K  K  D  *  Y  F  F  Y  L  L :   K  K  K  K   </second_frame>
            <third_frame>   Q  P  L  P  A  A  A  S  G  G  L  C  S  Y  R  I  *  E  A  L  S  V  C  Y  V  N  *  S  K  I  K  D  K  E  M  S  L  L  R  R  R  K  A  P  E  N  E  I  Q  P  D  V  E  P  K  L  D  A  E  E  D  D  K  K  S  R  K  K  N  V  K  S  G  K  K  K  K  W  S  C  I  D  N  C  C  W  F  V  G  C  I  C  C  V  W  W  I  L  L  F  L  Y  N  A  M  P  A  S  F  P  Q  Y  V  T  E  A  I  T  G  P  L  P  D  P  P  G  I  K  L  Q  K  E  G  L  K  A  K  H  P  V  V  F  I  P  G  I  V  T  C  G  L  E  L  W  E  G  H  Q  C  A  E  G  L  F  R  K  R  L  W  G  G  T  F  G  E  V  Y  K  R :   P  L  C  W  V  N  H  M  T  L  D  N  E  T  G  M  D  P  P  G  I  R  V  R  P  V  S  G  L  V  A  A  D  Y  F  A  P  G  Y  F  V  W  A  V  L  I  A  N  L  A  R  I  G  Y  E  E  K  T  M  Y  M  A  A  Y  D  W  R  L  A  F  Q  N  T  E  :  V  R  D  Q  T  L  S  R  I  K  S  N  I  E  L  M  V  A  T  S  G  K  K  A  V  I  V  P  H  S  M  G  V  V  Y  F  L  H  F  M  K  W  V  E  A  P  A  P  V  G  G  G  G  G  P  D  W  C  A  K  H  I  K  A  V  M  N  I  G  G  P  L  L  G  V  P  K  S  I  A  G  L  F  S  A  E  A  R  D  I  A  V  A  R :   A  L  A  P  G  V  L  D  T  D  M  F  H  L  Q  T  L  E  H  I  M  K  M  S  R  T  W  D  A  T  M  S  M  I  P  R  G  G  D  T  I  W  G  G  L  E  W  S  P  E  E  G  Y  S  P  C  R  S  K  S  R  D  D  A  A  Q  N  S  G  H  H  E  N  Q  T  T  D  S  K  A  K  Y  Y  S  Y  G  R  M  M  S  F  G  K  D  A  A  E  A  H  P  S  D  L  K  R  I  D  F  R  :  D  A  V  K  G  S  N  V  A  N  N  T  C  D  V  W  N  E  Y  Q  D  M  G  V  S  G  T  K  A  V  E  E  Y  K  V  Y  T  A  G  E  I  V  D  L  L  N  F  V  A  P  K  M  M  A  R  G  N  A  H  F  S  Y  G  I  A  D  D  L  D  D  P  K  Y  S  H  Y  K  Y  W  S  N  P  L  E  T  K :   L  P  N  A  P  D  M  E  I  Y  S  L  Y  G  V  G  I  E  T  E  R  A  Y  V  Y  K  R  I  P  T  A  G  C  N  I  P  F  Q  I  D  T  S  A  D  D  N  D  E  G  S  C  L  K  S  G  V  Y  T  V  D  G  D  E  T  V  P  A  L  S  A  G  F  M  C  A  K  G  W  R  G  K  T  R  F  N  P  S  G  I  K  T  Y  I  R  E  Y  F  H  A  P  P  A  N  L  L  E  G  R  G  T  Q  S  G  A  H  V  D  I  M  G  N  F  A  L  I  E  D  V  M  R  V  A  A  G  G  T  S  K  N  L  G  G  D  Q  V  Y  S  D  I  F  K  W  S  E  K  I  N  L  R  L  *  L  S  V  E  T  H  Q  F  H  C  V  N  I  P  A  *  H  V  I  Y  E  L  T  Y  P  F  H  W  M  P  F  K  Y  S  E  M  N  R  Y  F  S  R  Y  S  A  G  F  I  T  S  G  G  V  N  C  N  I  N  A  A  H  L  A  M  Q  Q  Q  R  I  I  G  V  *  *  G  L  S  L  M  L  Y  H  *  S  L  *  L  A  V  *  V  K  A  V  V  L  Q  V  F  I  L  Y  I  L  F  V  H  F  D  F  L  F  V  P  F  C  L  F  L  T  N  K  K  K  I  D  I  F  F  T  F   : *  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82267" stop="81813"/>
                    <exon start="80446" stop="80224"/>
                    <exon start="80104" stop="79824"/>
                    <exon start="79264" stop="78937"/>
                    <exon start="77143" stop="76887"/>
                    <exon start="76240" stop="75757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2025</number_coding_nucleotides>
                  <number_encoded_amino_acids>675</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIKDKEMSLLRRRKAPENEIQPDVEPKLDAEEDDKKSRKKNVKSGKKKKWSCIDNCCWFVGCICCVWWILLFLYNAMPASFPQYVTEAITGPLPDPPGIKLQKEGLKAKHPVVFIPGIVTCGLELWEGHQCAEGLFRKRLWGGTFGEVYKRPLCWVNHMTLDNETGMDPPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLAFQNTEVRDQTLSRIKSNIELMVATSGKKAVIVPHSMGVVYFLHFMKWVEAPAPVGGGGGPDWCAKHIKAVMNIGGPLLGVPKSIAGLFSAEARDIAVARALAPGVLDTDMFHLQTLEHIMKMSRTWDATMSMIPRGGDTIWGGLEWSPEEGYSPCRSKSRDDAAQNSGHHENQTTDSKAKYYSYGRMMSFGKDAAEAHPSDLKRIDFRDAVKGSNVANNTCDVWNEYQDMGVSGTKAVEEYKVYTAGEIVDLLNFVAPKMMARGNAHFSYGIADDLDDPKYSHYKYWSNPLETKLPNAPDMEIYSLYGVGIETERAYVYKRIPTAGCNIPFQIDTSADDNDEGSCLKSGVYTVDGDETVPALSAGFMCAKGWRGKTRFNPSGIKTYIREYFHAPPANLLEGRGTQSGAHVDIMGNFALIEDVMRVAAGGTSKNLGGDQVYSDIFKWSEKINLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81882" e_stop="81813"/>
            <exon e_start="80446" e_stop="80224"/>
            <exon e_start="80104" e_stop="79824"/>
            <exon e_start="79264" e_stop="78937"/>
            <exon e_start="77143" e_stop="76887"/>
            <exon e_start="76240" e_stop="75363"/>
            <exon e_start="75230" e_stop="75224"/>
            <exon e_start="74121" e_stop="74107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.900" acc_prob="0.445" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.857"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81882" e_stop="81813" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80446" e_stop="80224" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80104" e_stop="79824" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="79264" e_stop="78937" e_length="328"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="77143" e_stop="76887" e_length="257"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="76240" e_stop="75363" e_length="878"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.445">
            <gDNA_intron_boundary i_start="75362" i_stop="75231" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="0.857">
            <gDNA_exon_boundary e_start="75230" e_stop="75224" e_length="7"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75223" i_stop="74122" i_length="1102"/>
          </intron>
          <exon e_serial="8" e_score="0.733">
            <gDNA_exon_boundary e_start="74121" e_stop="74107" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81882" stop="81813"/>
              <exon start="80446" stop="80224"/>
              <exon start="80104" stop="79824"/>
              <exon start="79264" stop="79100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80005" stop="79824"/>
              <exon start="79264" stop="78937"/>
              <exon start="77143" stop="77098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79102" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="76036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79051" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="76083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77108" stop="76887"/>
              <exon start="76240" stop="75616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77067" stop="76887"/>
              <exon start="76240" stop="75668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76189" stop="75739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="75471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75832" stop="75363"/>
              <exon start="75230" stop="75224"/>
              <exon start="74121" stop="74107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75695" stop="75397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG : ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG : GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG : GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGG : GATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA : GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTT : AGAAAAA : GAAAAAGAAACCCCG</gDNA_template>
            <first_frame> D  I  S  V  L  K  D  C  F  G  S  G  F  G  A  G  L  L  E  K  C  T  K   : D  H  Y  A  G  *  T  T  *  H  *  I  M  K  L  G  W  I  L  L  V  L  E  L  G  Q  L  V  D  L  L  L  Q  I  T  L  L  Q  D  T  L  S  G  Q  F  *  L  L  T  W  L  E  L  D  T  R  R  K  P  C  I  W  L  H  M  I  G  G  L  P  F  R  T  P  R :   C  E  T  R  P  *  V  G  *  K  A  I  *  N  *  W  L  Q  P  V  A  R  R  Q  *  L  F  H  I  P  W  G  L  Y  T  F  C  I  L  *  S  G  W  R  H  Q  L  L  W  V  V  V  V  D  P  I  G  A  P  S  T  L  K  L  *  *  I  L  V  G  H  C  *  V  F  Q  N  L  *  L  A  F  S  Q  L  K  H  G  I  L  L  L  P   : G  L  W  L  Q  V  F  W  T  R  I  C  S  I  F  K  H  *  S  T  *  *  R  C  H  E  P  G  M  Q  P  C  Q  *  Y  Q  E  E  G  T  R  S  G  A  V  L  N  G  H  P  R  K  A  I  L  L  A  E  V  S  P  E  T  M  L  L  R  I  Q  D  I  T  R  I  K  L  Q  I  L  K  Q  N  I  T  V  M  E  G  *  C  P  L  E  R  M  Q  Q  K  L  I  H  Q  I  L  R  G  L  T  S  G :   M  L  L  R  A  V  M  L  Q  I  T  P  V  M  C  G  T  S  T  K  T  W  V  L  V  A  L  K  Q  W  K  S  T  R  F  I  Q  L  E  R  L  W  I  C  S  T  L  L  P  R  K  *  W  P  V  V  M  L  T  F  H  M  G  *  L  M  I  W  M  I  L  S  I  H  T  T  N  I  G  Q  I  H  W  R  Q   : S  Y  Q  M  L  L  T  W  R  S  I  H  C  M  E  L  A  L  K  L  K  E  H  M  F  T  S  G  Y  L  Q  Q  D  A  I  F  H  S  R  L  I  L  Q  L  M  I  M  M  K  V  A  A  *  N  L  V  F  T  R  *  M  V  M  R  L  C  L  H  *  A  Q  D  S  C  V  Q  K  D  G  E  E  K  L  D  L  I  P  L  V  S  K  L  I  *  G  S  I  F  M  L  P  L  Q  T  F  L  R  V  V  V  H  R  V  V  H  M  L  I  *  W  E  I  S  L  *  *  R  M  *  *  E  L  L  L  V  E  Q  V  K  T  W  E  V  I  K  F  T  Q  I  S  S  S  G  L  R  R  S  I  Y  V  C  D  Y  L  S  K  L  T  S  F  I  V  S  T  Y  Q  L  D  M  L  F  M  N  L  H  T  L  S  T  G  C  H  S  N  I  Q  K  *  T  G  I  F  P  D  I  V  Q  D  L  L  L  P  V  V  *  I  V  T  L  T  Q  L  I  S  L  C  N  N  K  E  *  *  V  C  S  R  D  *  V  *  C  C  T  I  K  A  Y  N  *  Q  C  K  *  K  L  S  Y  Y  R  C  S  S  S  T  F  Y  L  S  I  S  T  F  Y  L  S  L  F  A  Y  F  *  Q  I  K  K  R  L  I  F  F  L  P  F  :  R  K   : R  K  R  N  P  </first_frame>
            <second_frame>  T  S  V  C  *  R  I  V  S  E  A  A  L  G  R  D  F  W  R  S  V  Q  K  :  T  T  M  L  G  E  P  H  D  I  R  *  *  N  W  D  G  S  S  W  Y  *  S  *  A  S  *  W  T  C  C  C  R  L  L  C  S  R  I  L  C  L  G  S  F  D  C  *  L  G  S  N  W  I  R  G  E  N  H  V  Y  G  C  I  *  L  E  A  C  L  S  E  H  R   : G  A  R  P  D  P  K  S  D  K  K  Q  Y  R  T  D  G  C  N  Q  W  Q  E  G  S  N  C  S  T  F  H  G  G  C  I  L  F  A  F  Y  E  V  G  G  G  T  S  S  C  G  W  W  W  W  T  R  L  V  R  Q  A  H  *  S  C  D  E  Y  W  W  A  I  A  R  C  S  K  I  Y  S  W  P  F  L  S  *  S  T  G  Y  C  C  C  Q  :  G  S  G  S  R  C  S  G  H  G  Y  V  P  S  S  N  I  R  A  H  N  E  D  V  T  N  L  G  C  N  H  V  N  D  T  K  R  R  G  H  D  L  G  R  S  *  M  V  T  R  G  R  L  F  S  L  Q  K  *  V  Q  R  R  C  C  S  E  F  R  T  S  R  E  S  N  Y  R  F  *  S  K  I  L  Q  L  W  K  D  D  V  L  W  K  G  C  S  R  S  S  S  I  R  S  *  E  D  *  L  Q   : G  C  C  *  G  Q  *  C  C  K  *  H  L  *  C  V  E  R  V  P  R  H  G  C  *  W  H  *  S  S  G  R  V  Q  G  L  Y  S  W  R  D  C  G  F  A  Q  L  C  C  P  E  N  D  G  P  W  *  C  S  L  F  I  W  D  S  *  *  F  G  *  S  *  V  F  T  L  Q  I  L  V  K  S  I  G  D  K  :  V  T  K  C  S  *  H  G  D  L  F  T  V  W  S  W  H  *  N  *  K  S  I  C  L  Q  A  D  T  Y  S  R  M  Q  Y  S  I  P  D  *  Y  F  S  *  *  *  *  *  R  *  L  L  E  I  W  C  L  H  G  R  W  *  *  D  C  A  C  I  K  R  R  I  H  V  C  K  R  M  A  R  K  N  *  I  *  S  L  W  Y  Q  N  L  Y  K  G  V  F  S  C  S  P  C  K  P  S  *  G  S  W  Y  T  E  W  C  T  C  *  Y  N  G  K  F  R  F  D  R  G  C  N  E  S  C  C  W  W  N  K  *  K  L  G  R  *  S  S  L  L  R  Y  L  Q  V  V  *  E  D  Q  F  T  F  V  I  I  C  R  N  S  P  V  S  L  C  Q  H  T  S  L  T  C  Y  L  *  T  Y  I  P  F  P  L  D  A  I  Q  I  F  R  N  E  Q  V  F  F  Q  I  *  C  R  I  Y  Y  F  R  W  C  K  L  *  H  *  R  S  S  S  R  Y  A  T  T  K  N  N  R  C  V  V  G  I  E  F  D  V  V  P  L  K  L  I  I  S  S  V  S  E  S  C  R  T  T  G  V  H  P  L  H  F  I  C  P  F  R  L  F  I  C  P  F  L  L  I  F  D  K  *  K  K  D  *  Y  F  F  Y  L  L :   E  K  :  E  K  E  T  P </second_frame>
            <third_frame>   H  Q  C  A  E  G  L  F  R  K  R  L  W  G  G  T  F  G  E  V  Y  K  R :   P  L  C  W  V  N  H  M  T  L  D  N  E  T  G  M  D  P  P  G  I  R  V  R  P  V  S  G  L  V  A  A  D  Y  F  A  P  G  Y  F  V  W  A  V  L  I  A  N  L  A  R  I  G  Y  E  E  K  T  M  Y  M  A  A  Y  D  W  R  L  A  F  Q  N  T  E  :  V  R  D  Q  T  L  S  R  I  K  S  N  I  E  L  M  V  A  T  S  G  K  K  A  V  I  V  P  H  S  M  G  V  V  Y  F  L  H  F  M  K  W  V  E  A  P  A  P  V  G  G  G  G  G  P  D  W  C  A  K  H  I  K  A  V  M  N  I  G  G  P  L  L  G  V  P  K  S  I  A  G  L  F  S  A  E  A  R  D  I  A  V  A  R :   A  L  A  P  G  V  L  D  T  D  M  F  H  L  Q  T  L  E  H  I  M  K  M  S  R  T  W  D  A  T  M  S  M  I  P  R  G  G  D  T  I  W  G  G  L  E  W  S  P  E  E  G  Y  S  P  C  R  S  K  S  R  D  D  A  A  Q  N  S  G  H  H  E  N  Q  T  T  D  S  K  A  K  Y  Y  S  Y  G  R  M  M  S  F  G  K  D  A  A  E  A  H  P  S  D  L  K  R  I  D  F  R  :  D  A  V  K  G  S  N  V  A  N  N  T  C  D  V  W  N  E  Y  Q  D  M  G  V  S  G  T  K  A  V  E  E  Y  K  V  Y  T  A  G  E  I  V  D  L  L  N  F  V  A  P  K  M  M  A  R  G  N  A  H  F  S  Y  G  I  A  D  D  L  D  D  P  K  Y  S  H  Y  K  Y  W  S  N  P  L  E  T  K :   L  P  N  A  P  D  M  E  I  Y  S  L  Y  G  V  G  I  E  T  E  R  A  Y  V  Y  K  R  I  P  T  A  G  C  N  I  P  F  Q  I  D  T  S  A  D  D  N  D  E  G  S  C  L  K  S  G  V  Y  T  V  D  G  D  E  T  V  P  A  L  S  A  G  F  M  C  A  K  G  W  R  G  K  T  R  F  N  P  S  G  I  K  T  Y  I  R  E  Y  F  H  A  P  P  A  N  L  L  E  G  R  G  T  Q  S  G  A  H  V  D  I  M  G  N  F  A  L  I  E  D  V  M  R  V  A  A  G  G  T  S  K  N  L  G  G  D  Q  V  Y  S  D  I  F  K  W  S  E  K  I  N  L  R  L  *  L  S  V  E  T  H  Q  F  H  C  V  N  I  P  A  *  H  V  I  Y  E  L  T  Y  P  F  H  W  M  P  F  K  Y  S  E  M  N  R  Y  F  S  R  Y  S  A  G  F  I  T  S  G  G  V  N  C  N  I  N  A  A  H  L  A  M  Q  Q  Q  R  I  I  G  V  *  *  G  L  S  L  M  L  Y  H  *  S  L  *  L  A  V  *  V  K  A  V  V  L  Q  V  F  I  L  Y  I  L  F  V  H  F  D  F  L  F  V  P  F  C  L  F  L  T  N  K  K  K  I  D  I  F  F  T  F   : *  K  K :   K  K  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81880" stop="81813"/>
                    <exon start="80446" stop="80224"/>
                    <exon start="80104" stop="79824"/>
                    <exon start="79264" stop="78937"/>
                    <exon start="77143" stop="76887"/>
                    <exon start="76240" stop="75757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1638</number_coding_nucleotides>
                  <number_encoded_amino_acids>546</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQCAEGLFRKRLWGGTFGEVYKRPLCWVNHMTLDNETGMDPPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLAFQNTEVRDQTLSRIKSNIELMVATSGKKAVIVPHSMGVVYFLHFMKWVEAPAPVGGGGGPDWCAKHIKAVMNIGGPLLGVPKSIAGLFSAEARDIAVARALAPGVLDTDMFHLQTLEHIMKMSRTWDATMSMIPRGGDTIWGGLEWSPEEGYSPCRSKSRDDAAQNSGHHENQTTDSKAKYYSYGRMMSFGKDAAEAHPSDLKRIDFRDAVKGSNVANNTCDVWNEYQDMGVSGTKAVEEYKVYTAGEIVDLLNFVAPKMMARGNAHFSYGIADDLDDPKYSHYKYWSNPLETKLPNAPDMEIYSLYGVGIETERAYVYKRIPTAGCNIPFQIDTSADDNDEGSCLKSGVYTVDGDETVPALSAGFMCAKGWRGKTRFNPSGIKTYIREYFHAPPANLLEGRGTQSGAHVDIMGNFALIEDVMRVAAGGTSKNLGGDQVYSDIFKWSEKINLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74558" e_stop="74446"/>
            <exon e_start="73016" e_stop="72829"/>
            <exon e_start="72759" e_stop="72613"/>
            <exon e_start="72484" e_stop="72351"/>
            <exon e_start="72183" e_stop="72122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.905" e_score="0.991"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.988" e_score="0.963"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="74558" e_stop="74446" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.905">
            <gDNA_intron_boundary i_start="74445" i_stop="73017" i_length="1429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73016" e_stop="72829" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72759" e_stop="72613" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="72484" e_stop="72351" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.988">
            <gDNA_intron_boundary i_start="72350" i_stop="72184" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="0.935">
            <gDNA_exon_boundary e_start="72183" e_stop="72122" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74558" stop="74446"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74551" stop="74446"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72351"/>
              <exon start="72183" stop="72122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74551" stop="74446"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72351"/>
              <exon start="72183" stop="72128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74543" stop="74446"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74510" stop="74446"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTC : TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG : GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG : GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTCTGGTCAAACCTCCAAGTAAGACTTTGATTATACCGGGTAAAGAGCTTGTGCAAGTTTTAGCAAAG : GGTGTTCCTGCCTCTTTAGATGTCTTCAGAGCTGAATTGCTGCGGGAAAAACAGCTGGAACT</gDNA_template>
            <first_frame> L  C  S  S  F  N  F  S  S  T  Q  S  I  V  V  S  D  Q  S  P  F  L  I  A  T  F  N  L  S  R  Y  L  Y  I  F  I  Y  S :   V  *  G  E  A  E  L  N  C  I  L  L  I  S  F  G  D  N  M  Q  Q  A  V  Q  S  R  S  F  A  N  G  F  G  S  R  K  G  E  K  E  M  G  T  R  L  E  S  K  M  Q  S  T  K  T  T  S  S  K  S  T  A  V   : G  K  G  G  S  Y  E  S  P  S  H  D  R  L  V  Y  F  S  T  C  L  L  G  H  Q  V  E  V  Q  T  T  D  G  S  V  F  S  G  I  F  H  A  T  N  A  D  K  D  F   : G  I  I  L  K  L  A  H  L  I  K  D  G  S  L  E  S  K  N  T  P  E  S  L  V  K  P  P  S  K  T  L  I  I  P  G  K  E  L  V  Q  V  L  A  K  :  G  V  P  A  S  L  D  V  F  R  A  E  L  L  R  E  K  Q  L  E   </first_frame>
            <second_frame>  C  V  H  L  S  I  F  L  R  H  R  A  S  S  S  P  I  N  P  L  S  *  S  P  P  S  I  S  L  D  I  Y  I  Y  L  S  I   : L  C  R  V  K  L  S  *  T  V  S  C  L  Y  L  S  G  T  I  C  S  K  L  F  S  Q  G  P  L  P  M  D  L  A  V  A  K  A  K  K  K  W  G  Q  G  W  R  V  K  C  S  L  Q  K  R  L  P  A  S  R  Q  L  *  :  V  K  G  D  H  T  K  V  L  H  M  I  D  *  F  I  L  V  H  V  F  L  D  I  K  W  K  Y  K  Q  R  M  D  L  C  F  Q  G  Y  F  M  Q  Q  M  L  T  K  I  L  :  V  L  F  *  N  W  P  T  *  *  K  M  V  P  W  R  V  R  I  L  L  N  L  W  S  N  L  Q  V  R  L  *  L  Y  R  V  K  S  L  C  K  F  *  Q  R :   V  F  L  P  L  *  M  S  S  E  L  N  C  C  G  K  N  S  W  N  </second_frame>
            <third_frame>   V  F  I  F  Q  F  F  F  D  T  E  H  R  R  L  R  S  I  P  F  L  D  R  H  L  Q  S  L  *  I  S  I  Y  I  Y  L  F  :  C  V  G  *  S  *  A  E  L  Y  L  A  Y  I  F  R  G  Q  Y  A  A  S  C  S  V  K  V  L  C  Q  W  I  W  Q  S  Q  R  R  K  R  N  G  D  K  V  G  E  *  N  A  V  Y  K  N  D  F  Q  Q  V  D  S  C  R :   *  R  G  I  I  R  K  S  F  T  *  S  T  S  L  F  *  Y  M  S  S  W  T  S  S  G  S  T  N  N  G  W  I  C  V  F  R  D  I  S  C  N  K  C  *  Q  R  F  W :   Y  Y  S  E  T  G  P  L  D  K  R  W  F  P  G  E  *  E  Y  S  *  I  S  G  Q  T  S  K  *  D  F  D  Y  T  G  *  R  A  C  A  S  F  S  K   : G  C  S  C  L  F  R  C  L  Q  S  *  I  A  A  G  K  T  A  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73009" stop="72829"/>
                    <exon start="72759" stop="72613"/>
                    <exon start="72484" stop="72351"/>
                    <exon start="72183" stop="72124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAELNCILLISFGDNMQQAVQSRSFANGFGSRKGEKEMGTRLESKMQSTKTTSSKSTAVGKGGSYESPSHDRLVYFSTCLLGHQVEVQTTDGSVFSGIFHATNADKDFGIILKLAHLIKDGSLESKNTPESLVKPPSKTLIIPGKELVQVLAKGVPASLDVFRAELLREKQLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74567" e_stop="74446"/>
            <exon e_start="73700" e_stop="73693"/>
            <exon e_start="73016" e_stop="72829"/>
            <exon e_start="72759" e_stop="72613"/>
            <exon e_start="72484" e_stop="72414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.000" e_score="0.934"/>
          <exon-intron don_prob="0.609" acc_prob="0.905" e_score="0.625"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="74567" e_stop="74446" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74445" i_stop="73701" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="73700" e_stop="73693" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.609" acc_prob="0.905">
            <gDNA_intron_boundary i_start="73692" i_stop="73017" i_length="676"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73016" e_stop="72829" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72759" e_stop="72613" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="72484" e_stop="72414" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74567" stop="74446"/>
              <exon start="73700" stop="73693"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACTATTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTC : TTCCATTT : TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG : GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG : GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTCTG</gDNA_template>
            <first_frame> Q  K  L  L  C  S  S  F  N  F  S  S  T  Q  S  I  V  V  S  D  Q  S  P  F  L  I  A  T  F  N  L  S  R  Y  L  Y  I  F  I  Y  S :   S  I   : L  C  R  V  K  L  S  *  T  V  S  C  L  Y  L  S  G  T  I  C  S  K  L  F  S  Q  G  P  L  P  M  D  L  A  V  A  K  A  K  K  K  W  G  Q  G  W  R  V  K  C  S  L  Q  K  R  L  P  A  S  R  Q  L  *  :  V  K  G  D  H  T  K  V  L  H  M  I  D  *  F  I  L  V  H  V  F  L  D  I  K  W  K  Y  K  Q  R  M  D  L  C  F  Q  G  Y  F  M  Q  Q  M  L  T  K  I  L  :  V  L  F  *  N  W  P  T  *  *  K  M  V  P  W  R  V  R  I  L  L  N  L   </first_frame>
            <second_frame>  K  N  Y  C  V  H  L  S  I  F  L  R  H  R  A  S  S  S  P  I  N  P  L  S  *  S  P  P  S  I  S  L  D  I  Y  I  Y  L  S  I   : L  P  F  :  C  V  G  *  S  *  A  E  L  Y  L  A  Y  I  F  R  G  Q  Y  A  A  S  C  S  V  K  V  L  C  Q  W  I  W  Q  S  Q  R  R  K  R  N  G  D  K  V  G  E  *  N  A  V  Y  K  N  D  F  Q  Q  V  D  S  C  R :   *  R  G  I  I  R  K  S  F  T  *  S  T  S  L  F  *  Y  M  S  S  W  T  S  S  G  S  T  N  N  G  W  I  C  V  F  R  D  I  S  C  N  K  C  *  Q  R  F  W :   Y  Y  S  E  T  G  P  L  D  K  R  W  F  P  G  E  *  E  Y  S  *  I  S  </second_frame>
            <third_frame>   K  T  I  V  F  I  F  Q  F  F  F  D  T  E  H  R  R  L  R  S  I  P  F  L  D  R  H  L  Q  S  L  *  I  S  I  Y  I  Y  L  F  :  F  H  F :   V  *  G  E  A  E  L  N  C  I  L  L  I  S  F  G  D  N  M  Q  Q  A  V  Q  S  R  S  F  A  N  G  F  G  S  R  K  G  E  K  E  M  G  T  R  L  E  S  K  M  Q  S  T  K  T  T  S  S  K  S  T  A  V   : G  K  G  G  S  Y  E  S  P  S  H  D  R  L  V  Y  F  S  T  C  L  L  G  H  Q  V  E  V  Q  T  T  D  G  S  V  F  S  G  I  F  H  A  T  N  A  D  K  D  F   : G  I  I  L  K  L  A  H  L  I  K  D  G  S  L  E  S  K  N  T  P  E  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73009" stop="72829"/>
                    <exon start="72759" stop="72613"/>
                    <exon start="72484" stop="72414"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAELNCILLISFGDNMQQAVQSRSFANGFGSRKGEKEMGTRLESKMQSTKTTSSKSTAVGKGGSYESPSHDRLVYFSTCLLGHQVEVQTTDGSVFSGIFHATNADKDFGIILKLAHLIKDGSLESKNTPESL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="81305" e_stop="80487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="81305" e_stop="80487" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81305" stop="80487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCAT</gDNA_template>
            <first_frame> R  F  Q  F  P  *  R  K  L  A  S  N  *  P  Q  F  F  P  N  V  M  D  G  Y  T  Q  E  Q  L  L  R  Y  S  T  C  L  N  S  Q  A  D  N  P  F  *  S  V  L  V  Y  M  I  L  C  L  I  E  K  V  S  H  T  N  Y  C  S  T  I  L  *  I  L  S  I  I  *  H  I  C  Q  K  E  E  M  K  N  I  R  L  L  L  F  N  K  E  A  H  *  F  P  F  F  P  L  I  Y  I  L  V  K  Q  G  H  K  M  R  Q  S  K  C  T  E  *  I  S  P  L  G  G  I  Y  C  *  N  C  C  K  Q  S  S  V  F  G  I  E  Q  L  W  H  *  I  H  *  N  C  S  V  K  E  T  T  S  N  I  *  L  *  G  L  K  N  I  N  R  E  S  T  I  I  N  F  A  H  *  I  L  P  F  R  N  C  K  P  H  G  S  Q  C  N  T  S  F  S  *  A  V  R  L  S  D  L  V  R  D  F  C  L  G  M  K  G  S  H  I  Y  F  L  S  C  I  F  S  T  S  K  S  W  F  L  T  *  N  L  F  L  K  K  T  K  N  K  N  R  K  H  L  N  L  *  L  T  P  *  E  L  N  L  C  R  H  C  *  H </first_frame>
            <second_frame>  D  F  N  F  L  S  G  N  *  L  L  I  S  L  N  F  F  R  T  S  W  T  V  I  L  K  N  N  Y  L  D  I  L  P  V  S  I  R  K  R  T  I  R  F  N  L  F  W  F  T  *  S  F  A  *  L  K  K  F  L  I  R  T  I  A  P  L  Y  C  E  F  *  A  S  Y  D  T  S  V  K  K  R  K  *  R  T  S  G  Y  S  F  S  T  K  K  P  T  N  F  H  F  F  P  S  Y  T  F  *  S  N  K  A  T  K  *  G  R  A  S  A  L  N  K  F  H  L  W  E  G  Y  T  A  E  I  V  V  N  N  H  L  S  L  G  *  N  N  C  G  I  E  Y  T  E  I  V  R  S  K  K  L  L  V  I  S  S  Y  K  V  *  K  I  L  I  G  N  P  P  *  L  I  L  P  I  E  F  C  P  S  G  T  V  S  L  T  A  H  S  V  I  H  L  S  V  R  Q  C  D  F  L  I  *  *  E  T  S  V  *  E  *  K  D  L  I  F  T  F  F  L  V  F  F  P  L  Q  S  H  G  S  *  P  K  T  F  S  L  K  K  Q  K  T  K  I  E  N  I  L  T  S  S  S  P  R  K  N  *  I  S  V  V  I  A  S   </second_frame>
            <third_frame>   I  S  I  S  L  A  E  T  S  F  *  L  A  S  I  F  S  E  R  H  G  R  L  Y  S  R  T  I  T  *  I  F  Y  L  S  Q  F  A  S  G  Q  S  V  L  I  C  F  G  L  H  D  P  L  L  N  *  K  S  F  S  Y  E  L  L  L  H  Y  I  V  N  F  E  H  H  M  T  H  L  S  K  R  G  N  E  E  H  Q  V  T  P  F  Q  Q  R  S  P  L  I  S  I  F  S  P  H  I  H  S  S  Q  T  R  P  Q  N  E  A  E  Q  V  H  *  I  N  F  T  S  G  R  D  I  L  L  K  L  L  *  T  I  I  C  L  W  D  R  T  T  V  A  L  N  T  L  K  L  F  G  Q  R  N  Y  *  *  Y  L  A  I  R  F  E  K  Y  *  *  G  I  H  H  N  *  F  C  P  L  N  F  A  L  Q  E  L  *  A  S  R  L  T  V  *  Y  I  F  Q  L  G  S  A  T  F  *  F  S  K  R  L  L  F  R  N  E  R  I  S  Y  L  L  S  F  L  Y  F  F  H  F  K  V  M  V  L  N  L  K  P  F  P  *  K  N  K  K  Q  K  *  K  T  S  *  P  L  A  H  P  V  R  T  K  S  L  S  S  L  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81135" stop="80941"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFSYELLLHYIVNFEHHMTHLSKRGNEEHQVTPFQQRSPLISIFSPHIHSSQTRPQNEAEQVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="91843" PGL_stop="92706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91843" e_stop="92706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91843" e_stop="92706" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91843" stop="92533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91932" stop="92388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92198" stop="92706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92275" stop="92644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</gDNA_template>
            <first_frame> S  S  S  G  V  S  S  K  L  Q  S  L  I  M  L  C  F  L  S  P  *  N  H  H  Q  L  S  I  T  L  C  L  H  C  L  F  F  T  F  L  L  L  L  L  L  L  C  V  C  V  *  *  S  I  P  H  *  H  H  Y  Y  A  A  A  F  D  S  S  I  T  D  N  K  E  I  P  S  I  I  F  H  P  T  P  S  L  P  L  F  F  F  L  L  L  C  F  F  F  F  F  Y  K  N  T  Q  I  W  I  G  I  V  I  N  G  R  G  K  F  L  I  L  Q  T  H  L  S  L  L  H  F  L  T  Q  F  T  V  Q  L  I  K  E  K  K  K  K  R  L  F  F  T  K  K  Q  C  V  R  N  R  A  T  I  W  R  V  F  K  K  L  V  *  L  R  N  G  W  N  I  K  Q  V  K  K  L  L  F  E  E  N  L  *  L  I  S  K  G  I  *  *  T  R  A  R  V  L  Q  I  R  A  V  G  V  C  F  L  L  Q  K  L  N  P  V  T  I  M  *  L  *  I  L  L  G  H  L  L  L  V  M  V  *  T  G  L  N  Q  S  E  P  Q  F  P  V  Q  T  L  K  N  T  A  K  I  K  L  N  S  S  T  T  M  A  I  S  A  I  I  I  L  L  W  K  E  I  S  L  P  K  P  K  V </first_frame>
            <second_frame>  L  L  Q  A  C  H  P  N  Y  S  L  *  L  C  S  V  F  S  L  P  K  T  I  I  S  Y  P  *  L  F  V  S  I  V  S  S  S  H  S  Y  Y  Y  Y  Y  Y  C  V  Y  V  Y  D  D  Q  F  L  I  D  I  T  I  M  P  Q  L  L  T  H  L  *  Q  T  I  K  R  F  L  Q  S  F  F  T  P  L  L  H  F  P  C  F  S  S  C  C  S  V  F  F  S  S  S  I  K  I  L  R  Y  G  *  V  *  L  S  T  G  E  G  N  F  S  F  F  K  P  I  F  L  F  Y  T  S  *  R  N  L  P  F  N  *  S  R  R  R  R  R  R  D  C  S  L  Q  R  N  N  A  *  E  T  E  Q  Q  Y  G  E  F  S  K  S  L  Y  D  *  E  M  D  G  T  *  S  K  *  K  S  C  C  S  K  K  I  Y  S  *  F  R  K  E  S  D  E  L  E  L  E  F  F  R  F  E  L  W  G  C  V  F  F  F  R  N  *  I  Q  L  Q  *  C  S  Y  K  F  C  W  V  I  F  F  L  L  W  S  K  Q  A  *  T  N  Q  N  L  N  F  R  F  K  P  *  K  T  Q  Q  K  S  S  *  T  A  Q  Q  L  W  R  F  P  P  *  S  S  S  Y  G  K  R  F  R  S  Q  N  Q  K   </second_frame>
            <third_frame>   F  F  R  R  V  I  Q  I  T  V  S  N  Y  A  L  F  S  L  S  L  K  P  S  S  V  I  H  N  S  L  S  P  L  S  L  L  H  I  P  I  I  I  I  T  I  V  C  M  C  M  M  I  N  S  S  L  T  S  L  L  C  R  S  F  *  L  I  Y  N  R  Q  *  R  D  S  F  N  H  F  S  P  H  S  F  T  S  P  V  F  L  P  V  A  L  F  F  F  L  L  L  *  K  Y  S  D  M  D  R  Y  S  Y  Q  R  E  R  E  I  S  H  S  S  N  P  S  F  S  S  T  L  L  D  A  I  Y  R  S  I  D  Q  G  E  E  E  E  E  I  V  L  Y  K  E  T  M  R  K  K  Q  S  N  N  M  E  S  F  Q  K  A  C  M  I  E  K  W  M  E  H  K  A  S  E  K  V  V  V  R  R  K  S  I  A  D  F  E  R  N  L  M  N  S  S  S  S  S  S  D  S  S  C  G  G  V  F  S  S  S  E  T  E  S  S  Y  N  N  V  V  I  N  S  A  G  S  S  S  S  C  Y  G  L  N  R  P  K  P  I  R  T  S  I  S  G  S  N  P  E  K  H  S  K  N  Q  A  K  Q  L  N  N  Y  G  D  F  R  H  N  H  P  P  M  E  R  D  F  A  P  K  T  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92148" stop="92705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYSDMDRYSYQREREISHSSNPSFSSTLLDAIYRSIDQGEEEEEIVLYKETMRKKQSNNMESFQKACMIEKWMEHKASEKVVVRRKSIADFERNLMNSSSSSSDSSCGGVFSSSETESSYNNVVINSAGSSSSCYGLNRPKPIRTSISGSNPEKHSKNQAKQLNNYGDFRHNHPPMERDFAPKTKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91845" stop="92039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRRVIQITVSNYALFSLSLKPSSVIHNSLSPLSLLHIPIIIITIVCMCMMINSSLTSLLCRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="92803" PGL_stop="93436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92803" e_stop="93436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="92803" e_stop="93436" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</gDNA_template>
            <first_frame> V  S  *  T  H  Y  S  L  L  E  I  Q  R  N  P  K  L  F  L  R  I  L  Q  M  H  L  L  H  V  L  Q  L  L  H  S  P  G  H  V  *  A  K  A  H  P  N  P  A  A  T  E  P  N  V  P  L  D  F  T  Q  *  V  S  S  *  T  K  I  V  S  H  V  D  I  K  I  C  T  K  K  K  Y  P  N  Q  S  L  *  R  I  I  S  E  T  P  L  T  K  S  S  N  F  I  Q  W  R  K  I  V  E  *  K  K  L  L  R  S  C  *  E  I  I  R  E  I  Q  I  P  K  S  R  K  W  K  F  S  T  M  K  M  M  T  T  M  M  V  Q  V  V  L  V  Q  I  Y  S  N  L  I  I  F  L  Q  L  E  *  I  V  I  G  I  S  K  N  Y  P  F  T  K  L  L  I  S  I  L  I  E  P  L  L  V  V  *  F  C  N  K  S  V  L  F  I  V  N  *  C  N  F  C  N  W  F  </first_frame>
            <second_frame>  F  L  E  L  T  I  H  C  W  K  Y  K  E  T  Q  S  C  F  F  E  F  C  K  C  I  F  Y  M  F  F  S  F  F  I  L  Q  V  M  F  K  Q  K  H  T  Q  I  Q  Q  Q  R  N  Q  T  F  R  *  I  L  P  S  E  Y  H  R  R  R  R  L  S  A  M  W  T  *  K  S  V  R  R  K  N  T  Q  T  R  V  S  K  E  *  Y  Q  K  H  R  *  R  R  A  Q  I  S  F  N  G  E  K  S  S  S  R  R  S  Y  *  G  V  A  E  K  L  S  E  K  F  K  F  P  N  Q  E  N  G  N  F  R  R  *  R  *  *  R  R  *  W  C  K  L  C  *  F  R  F  I  R  T  *  *  S  F  C  N  W  N  R  *  *  *  V  S  R  R  I  T  R  L  R  N  Y  S  S  R  Y  *  S  S  H  C  *  W  F  D  F  V  I  K  V  Y  Y  L  L  L  T  N  V  I  F  V  I  G  L </second_frame>
            <third_frame>   F  L  N  S  L  F  T  A  G  N  T  K  K  P  K  V  V  S  S  N  S  A  N  A  S  S  T  C  S  S  A  S  S  F  S  R  S  C  L  S  K  S  T  P  K  S  S  S  N  G  T  K  R  S  V  R  F  Y  P  V  S  I  I  V  D  E  D  C  Q  P  C  G  H  K  N  L  Y  E  E  K  I  P  K  P  E  S  L  K  N  N  I  R  N  T  V  N  E  E  L  K  F  H  S  M  E  K  N  R  R  V  E  E  A  T  K  E  L  L  R  N  Y  Q  R  N  S  N  S  Q  I  K  K  M  E  I  F  D  D  E  D  D  D  D  D  D  G  A  S  C  A  S  S  D  L  F  E  L  D  N  L  S  A  I  G  I  D  S  N  R  Y  L  E  E  L  P  V  Y  E  T  T  H  L  D  T  N  R  A  I  A  S  G  L  I  L  *  *  K  C  I  I  Y  C  *  L  M  *  F  L  *  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92805" stop="93386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNSLFTAGNTKKPKVVSSNSANASSTCSSASSFSRSCLSKSTPKSSSNGTKRSVRFYPVSIIVDEDCQPCGHKNLYEEKIPKPESLKNNIRNTVNEELKFHSMEKNRRVEEATKELLRNYQRNSNSQIKKMEIFDDEDDDDDDGASCASSDLFELDNLSAIGIDSNRYLEELPVYETTHLDTNRAIASGLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="112403" PGL_stop="108827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112403" e_stop="112318"/>
            <exon e_start="112218" e_stop="112162"/>
            <exon e_start="111522" e_stop="111448"/>
            <exon e_start="111062" e_stop="110943"/>
            <exon e_start="110840" e_stop="110670"/>
            <exon e_start="110130" e_stop="110017"/>
            <exon e_start="109800" e_stop="109630"/>
            <exon e_start="109267" e_stop="108827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.748" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112403" e_stop="112318" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.936">
            <gDNA_intron_boundary i_start="112317" i_stop="112219" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112218" e_stop="112162" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.976">
            <gDNA_intron_boundary i_start="112161" i_stop="111523" i_length="639"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111522" e_stop="111448" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.825">
            <gDNA_intron_boundary i_start="111447" i_stop="111063" i_length="385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111062" e_stop="110943" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.635" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110942" i_stop="110841" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110840" e_stop="110670" e_length="171"/>
          </exon>
          <intron i_serial="5" don_prob="0.916" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110669" i_stop="110131" i_length="539"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110130" e_stop="110017" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109800" e_stop="109630" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.748">
            <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362"/>
          </intron>
          <exon e_serial="8" e_score="0.964">
            <gDNA_exon_boundary e_start="109267" e_stop="108827" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112403" stop="112318"/>
              <exon start="112218" stop="112162"/>
              <exon start="111522" stop="111448"/>
              <exon start="111062" stop="110943"/>
              <exon start="110840" stop="110808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112398" stop="112318"/>
              <exon start="112218" stop="112162"/>
              <exon start="111522" stop="111448"/>
              <exon start="111062" stop="110943"/>
              <exon start="110840" stop="110670"/>
              <exon start="110130" stop="110060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112365" stop="112318"/>
              <exon start="112218" stop="112162"/>
              <exon start="111522" stop="111448"/>
              <exon start="111062" stop="110943"/>
              <exon start="110840" stop="110670"/>
              <exon start="110130" stop="110017"/>
              <exon start="109800" stop="109712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112354" stop="112318"/>
              <exon start="112218" stop="112162"/>
              <exon start="111522" stop="111448"/>
              <exon start="111062" stop="110943"/>
              <exon start="110840" stop="110670"/>
              <exon start="110130" stop="110062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111522" stop="111448"/>
              <exon start="111062" stop="110947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110977" stop="110943"/>
              <exon start="110840" stop="110670"/>
              <exon start="110130" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="109074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110130" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110051" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110047" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110047" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109026" stop="108857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTACAATGATACTAAAATTCAATTGCTTGATCTTCCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAG : GTCATTGCTGTTTCTAAGTCAGCGGACATTGTATTAATGGTTCTCGATGCTTCAAAA : AGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCTGCGACTAAACAAGAAACCTCCTCAG : ATATACTTCAAGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATGAGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAG : GTGTTATTTCGTGAAGATGCCACAGTGGATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTGTTGTCATCAGCTGCAACATGAAG : CTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGCGATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCCAGTGGTGCTTTCTGCT : GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG : GAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGATATCTTAGCTTCATGTTATC</gDNA_template>
            <first_frame> S  I  T  M  I  L  K  F  N  C  L  I  F  R  E  S  L  K  V  H  L  K  A  R  V  V  V  G  R :   S  L  L  F  L  S  Q  R  T  L  Y  *  W  F  S  M  L  Q  K :   V  K  A  I  G  K  Y  *  Q  R  S  W  K  R  W  A  C  D  *  T  R  N  L  L  R :   Y  T  S  R  R  K  R  L  V  E  F  L  S  I  A  L  C  I  *  H  M  W  M  R  S  Y  A  I  K  Y  C  M  N  T  R  S  T  M  L  R :   C  Y  F  V  K  M  P  Q  W  M  T  L  L  M  L  L  R  A  I  V  N  T  *  S  A  Y  M  S  T  T  R  *  M  L  L  V  L  M  M  *  T  D  *  P  D  S  Q  T  L  L  S  S  A  A  T  *  S :   *  I  W  I  D  C  L  Q  K  C  G  K  R  W  V  L  S  E  F  T  Q  S  L  K  A  S  N  Q  T  S  Q  I  Q  W  C  F  L  L :   I  E  V  A  V  R  *  K  I  S  V  I  T  Y  I  G  V  L  L  R  M  *  S  M  C  W  F  G  V  L  V  Q  G  T  P  P  S  I  V  A  L  L  K  C  L  R  M  K  M  W  C  R  L  L  R  K  R :   R  R  K  M  E  E  V  E  A  D  S  N  H  I  L  M  L  L  L  V  Y  L  T  V  K  R  R  L  H  *  R  P  D  *  A  R  *  W  R  C  *  F  Y  M  L  I  W  *  D  P  C  A  R  Y  Y  Y  *  R  M  S  Y  T  M  R  I  A  R  V  F  S  T  L  *  S  E  T  Y  L  S  V  V  A  R  R  F  Q  C  C  I  L  Y  L  I  M  L  Q  P  *  S  K  Y  N  I  W  G  H  A  F  F  L  Q  I  I  L  T  A  V  H  L  *  N  V  R  *  K  V  L  V  L  D  P  E  S  V  N  A  L  I  I  G  Y  L  S  F  M  L   </first_frame>
            <second_frame>  P  L  Q  *  Y  *  N  S  I  A  *  S  S  G  N  H  *  R  C  I  *  R  Q  G  S  W  *  A   : G  H  C  C  F  *  V  S  G  H  C  I  N  G  S  R  C  F  K   : K  *  R  P  S  A  N  I  D  K  G  A  G  S  G  G  P  A  T  K  Q  E  T  S  S   : D  I  L  Q  E  E  K  D  W  W  N  F  F  Q  *  H  S  A  S  D  T  C  G  *  E  A  M  L  S  N  T  A  *  I  Q  D  P  Q  C  *   : G  V  I  S  *  R  C  H  S  G  *  P  Y  *  C  Y  *  G  Q  S  *  I  H  E  V  H  I  C  L  Q  Q  D  R  C  C  W  Y  *  *  C  R  Q  I  S  Q  T  A  K  L  C  C  H  Q  L  Q  H  E   : A  E  S  G  *  I  A  C  K  N  V  G  S  D  G  S  C  Q  S  L  H  K  A  S  R  P  A  T  R  L  H  R  S  S  G  A  F  C   : *  *  R  W  L  Y  G  R  R  F  L  *  S  H  T  S  E  S  C  *  G  C  E  V  C  V  G  L  G  Y  *  C  K  A  L  P  P  A  L  W  P  C  S  N  A  *  G  *  R  C  G  A  D  C  *  E  K   : G  E  G  R  W  R  R  *  R  P  I  Q  I  T  F  *  C  S  F  S  Y  I  *  P  *  K  E  G  S  I  E  D  L  I  E  P  D  S  G  A  A  S  S  I  C  *  S  G  R  I  H  V  P  G  I  T  I  E  E  *  A  I  Q  *  E  *  L  E  F  F  Q  L  Y  E  V  K  P  I  Y  Q  *  W  L  E  D  F  S  V  V  F  Y  I  *  S  C  Y  N  P  R  V  S  T  I  S  G  D  M  L  F  S  S  R  *  Y  *  L  P  F  I  C  E  M  *  D  K  K  F  W  S  W  I  L  K  V  S  M  R  *  *  L  D  I  L  A  S  C  Y  </second_frame>
            <third_frame>   H  Y  N  D  T  K  I  Q  L  L  D  L  P  G  I  I  E  G  A  S  E  G  K  G  R  G  R  Q  :  V  I  A  V  S  K  S  A  D  I  V  L  M  V  L  D  A  S  K  :  S  E  G  H  R  Q  I  L  T  K  E  L  E  A  V  G  L  R  L  N  K  K  P  P  Q  :  I  Y  F  K  K  K  K  T  G  G  I  S  F  N  S  T  L  H  L  T  H  V  D  E  K  L  C  Y  Q  I  L  H  E  Y  K  I  H  N  A  E  :  V  L  F  R  E  D  A  T  V  D  D  L  I  D  V  I  E  G  N  R  K  Y  M  K  C  I  Y  V  Y  N  K  I  D  V  V  G  I  D  D  V  D  R  L  A  R  Q  P  N  S  V  V  I  S  C  N  M  K  :  L  N  L  D  R  L  L  A  K  M  W  E  A  M  G  L  V  R  V  Y  T  K  P  Q  G  Q  Q  P  D  F  T  D  P  V  V  L  S  A  :  D  R  G  G  C  T  V  E  D  F  C  N  H  I  H  R  S  L  V  K  D  V  K  Y  V  L  V  W  G  T  S  A  R  H  S  P  Q  H  C  G  L  A  Q  M  L  E  D  E  D  V  V  Q  I  V  K  K  K  :  E  K  E  D  G  G  G  R  G  R  F  K  S  H  S  N  A  P  S  R  I  S  D  R  E  K  K  A  P  L  K  T  *  L  S  Q  I  V  A  L  L  V  L  Y  A  D  L  V  G  S  M  C  Q  V  L  L  L  K  N  E  L  Y  N  E  N  S  *  S  F  F  N  F  M  K  *  N  L  F  I  S  S  G  S  K  I  S  V  L  Y  S  I  F  D  H  V  T  T  L  E  *  V  Q  Y  L  G  T  C  F  F  P  P  D  N  I  N  C  R  S  F  V  K  C  E  I  K  S  F  G  L  G  S  *  K  C  Q  C  V  N  N  W  I  S  *  L  H  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112401" stop="112318"/>
                    <exon start="112218" stop="112162"/>
                    <exon start="111522" stop="111448"/>
                    <exon start="111062" stop="110943"/>
                    <exon start="110840" stop="110670"/>
                    <exon start="110130" stop="110017"/>
                    <exon start="109800" stop="109630"/>
                    <exon start="109267" stop="109169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSADIVLMVLDASKSEGHRQILTKELEAVGLRLNKKPPQIYFKKKKTGGISFNSTLHLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCIYVYNKIDVVGIDDVDRLARQPNSVVISCNMKLNLDRLLAKMWEAMGLVRVYTKPQGQQPDFTDPVVLSADRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHSPQHCGLAQMLEDEDVVQIVKKKEKEDGGGRGRFKSHSNAPSRISDREKKAPLKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 296 chains have been computed
$ 
$ memory statistics:
$ 699808 bytes spliced alignments in total
$ 210 spliced alignments have been stored
$ 3332 bytes was the average size of a spliced alignment
$ 38640 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1610 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 331 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:46:40
-->
