<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:44:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417868" ref_strand="+" ref_description="SGN-E417868 [STM-26-E12]">
      <seq>catgcttcaaccaccccacgctgcagtccaaggaactgtgactctcttcagtaggcacagcaaactccttggccccataagaactgcattgcttttctaagatacgaattacgattgtagaaatcagtcgggaagctaagagatctcacagaaattgaaaatgagtagcaagaaaatattgatagttggtggcacaggttacttgggtcagcatcttctgcaagaattcacggcaatccaagatactcttccatatgctctctcattagcctttacctaccacaccaatccccctcctgagtgcctactgaaagccattcctcatgccctacccttccatgtagatttacgaaccagcaatggctttgatgacatctcacaaaattttgggcagcctgatgttgtggttaattgtgctgcactttctgttccacgtgcctgtgaagtggatgctactgctgccatggctattaatgtgccttctgctcttgttaagtggttgtcaagttttagcaatggcggtactcttctgattcacttgtctactgatcaagtttatgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgtaaattactcaaattttgcaattttgaggagcagtattatttatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="191" stop="3343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="488" g_stop="868" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="394" r_length="381" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="869" i_stop="1452" i_length="584">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1453" g_stop="1612" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="554" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1613" i_stop="2897" i_length="1285">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2898" g_stop="3043" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="700" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E417868" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="488" e_stop="868"/>
          <exon e_start="1453" e_stop="1612"/>
          <exon e_start="2898" e_stop="3043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACGCTGCAGTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAGGTATGAATTTTACACTACAAAGTTACTAGAGATTCCATCTTTCTCTTTTAGGGTTTCAAGAATTGCAATTATTTTGCTTGCATTTTCAGTTTTGGTGATTGATAGCATCTTACGAATTGTTTGTCTAGTTTTTTGGGGTGGAAGTGTAAAACTTATGGTTCAAAGGTTCAACTAGTAATAGATTTTGAACACATAAATCCAATGGGTAATGGTAGAATTTTGATTTCGAACTCGAACTCATGAAGTTTACATTTTGAATTTCATGGTTTGCATTTTACTGTACACACTTACTAACGATTACGTTTTTCTTTTTCTCACTTGTATTTTGGTGATTGAGATTTGCATCTTCATATATATGTATATAAGATTTGAAGAAAGTTTTGGTATTTAATAAGAGAACTTATGTGTCGACTGATATCACTCAAGGCTGTGAATTTATTTAGGTGGTCTTTGCTGTCTGTTTGTTGTAATCTCGGATAAATACCTGAAGTGGCTGGTGGATTGTATAGTAGGTCAAATTTATTACTGAACCAGTTAAAATGACCATAATAGCTAATACCAAGTTTTGTAATGTGAATGAGCAGCCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAGGTAACACACGAGGAAATCATTGTAGTGACAACAGCTAATTTTTCACAAAAGTTAGAGAGTTTCTTGCTTCTGTATTGAGCTGGTTATGCTTCTTAGGCTAACTGTGTTGGTTTCTAATGTGGAGGAGAATGATAAAAGTCGACTTACTTTCATTGGTAGGGTTTGGTCATTGTTTCATTTATTTGGTACCGTTGGAAAAAAGTAGATGATGAAAATAGTAAAATGGACGTACTTCATTCCTCTGTAGGACTTCTGAGAGTGAAAAGTTGCATAGCTGATTACACAAGTCCTCAGCTATTGCCACACTCCACTTCTGCTTGGTTACCTGGCAGCCAATTCTTCCCTCATCTTACAACTCAGCTTCAATGTTGCTTTAGAGCCTTCGAATCCGTCTCCCCACTGATCTCCTTTTTCTTTTGTTAAAAAAAGGATCACCTATTTCATCAGATTTTAAAGTTTATCCACTCATTTAACTTTTGAGTTAGACGCAAAGATGCAATTTTTGGCATTTCTTAACAATTGATATAGCACTTTGCCAGTTTTATTTGTTATTTAGTTACACACTCTTCAAGATAATATAGCCAATGGGCAATGAGGTGCATGTCTTAGAGCTTTTGTGCCTGCCCGTAAGTGTCTCCTAAGCGAGATGTTGCGCCTAACCTGCCCTGCACCTAGATTCTTGGTGTAAGCGTACCTCAATTGAGTATTTAACAACACCACTGGCTATTAATATCATAGGAGCTAAACTCTATATACTTATTAACTCCTTGTGTTACCTCTGCAACTCTTGCCTAACAAACTAATTCTGGCACAAGGATGAACTGATCCTTCTAACACATGGGTAAACTTTTTAATGTTAAGGAAAATATCAGTAGGTTTATGGTATTTTATAACTCCTTCAGGTAGGTAAAGGTAAGATGCTTAAAATTTATAGCCACTTGGATAACGAAGATGCTGACTTGATATCTGGTGCATAAAATTTTGAGAAATAGGATGTTAGCTTATGTTCAGCAATTCCCCTGATATATTTGTTGGTGAATGCTTCATAATATTTATTGGCAGTATTCCTCTCCATGAAAGATTTGAAAAAGCTGTTTACAACCTTAGCATTTATAGATCAAGCAAGCTCTCTCACCTGTGATGTAATTTTATCAAATTGTTGAATGTTCTCATGTGGCTGTATGGACAACCATTTAATTATTGATTGTTCTCATGAGTCGTATATTTTGACTGATGCAAACAATTTTCTTGAGACTATGTGATGCTAATTAAACTTTTATCTCAGTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGA</genome_strand>
        <mrna_strand>CCCCACGCTGCAGTCCAAGGAACTGTGACTCTCTTCAGTAGGCACAGCAAACTCCTTGGCCCCATAAGAACTGCATTGCTTTTCTAAGATACGAATTACGATTGTAGAAATCAGTCGGGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAAATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAAGAATTCACGGCAATCCAAGATACTCTTCCATATGCTCTCTCATTAGCCTTTACCTACCACACCAATCCCCCTCCTGAGTGCCTACTGAAAGCCATTCCTCATGCCCTACCCTTCCATGTAGATTTACGAACCAGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATGCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGTAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202876" ref_strand="+" ref_description="SGN-E202876 [cLEB-1-F5]">
      <seq>gcacgaggtccaacgaactgtgactctcatcagtaggcacagcaaactccttggccccataaaaactgcattgcttttccaagatacgaattacgattgtagaaatcagtggagaagctaagagatctcacagaaattgaaaatgagtagcaagaagatattgatagttggtggcacaggttacttgggtcagcatcttctgcaggaattcacggcaacccaaaatactcttccatatgctctctcgttagcctttacctaccacaccaatcccccacctgagcgcctactggaagccattcctcatgccctaccctttcatgtagatttacgaaccggcaatggctttgatgacatctcacaaaattttgggcagtttacgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgcaaattactcaaattttgcaattttgaggagcagtattatttatggacctcagactgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="193" stop="3356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="490" g_stop="868" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2898" g_stop="3056" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="535" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E202876" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="490" e_stop="868"/>
          <exon e_start="2898" e_stop="3056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGCTGCAGTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAGGTATGAATTTTACACTACAAAGTTACTAGAGATTCCATCTTTCTCTTTTAGGGTTTCAAGAATTGCAATTATTTTGCTTGCATTTTCAGTTTTGGTGATTGATAGCATCTTACGAATTGTTTGTCTAGTTTTTTGGGGTGGAAGTGTAAAACTTATGGTTCAAAGGTTCAACTAGTAATAGATTTTGAACACATAAATCCAATGGGTAATGGTAGAATTTTGATTTCGAACTCGAACTCATGAAGTTTACATTTTGAATTTCATGGTTTGCATTTTACTGTACACACTTACTAACGATTACGTTTTTCTTTTTCTCACTTGTATTTTGGTGATTGAGATTTGCATCTTCATATATATGTATATAAGATTTGAAGAAAGTTTTGGTATTTAATAAGAGAACTTATGTGTCGACTGATATCACTCAAGGCTGTGAATTTATTTAGGTGGTCTTTGCTGTCTGTTTGTTGTAATCTCGGATAAATACCTGAAGTGGCTGGTGGATTGTATAGTAGGTCAAATTTATTACTGAACCAGTTAAAATGACCATAATAGCTAATACCAAGTTTTGTAATGTGAATGAGCAGCCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAGGTAACACACGAGGAAATCATTGTAGTGACAACAGCTAATTTTTCACAAAAGTTAGAGAGTTTCTTGCTTCTGTATTGAGCTGGTTATGCTTCTTAGGCTAACTGTGTTGGTTTCTAATGTGGAGGAGAATGATAAAAGTCGACTTACTTTCATTGGTAGGGTTTGGTCATTGTTTCATTTATTTGGTACCGTTGGAAAAAAGTAGATGATGAAAATAGTAAAATGGACGTACTTCATTCCTCTGTAGGACTTCTGAGAGTGAAAAGTTGCATAGCTGATTACACAAGTCCTCAGCTATTGCCACACTCCACTTCTGCTTGGTTACCTGGCAGCCAATTCTTCCCTCATCTTACAACTCAGCTTCAATGTTGCTTTAGAGCCTTCGAATCCGTCTCCCCACTGATCTCCTTTTTCTTTTGTTAAAAAAAGGATCACCTATTTCATCAGATTTTAAAGTTTATCCACTCATTTAACTTTTGAGTTAGACGCAAAGATGCAATTTTTGGCATTTCTTAACAATTGATATAGCACTTTGCCAGTTTTATTTGTTATTTAGTTACACACTCTTCAAGATAATATAGCCAATGGGCAATGAGGTGCATGTCTTAGAGCTTTTGTGCCTGCCCGTAAGTGTCTCCTAAGCGAGATGTTGCGCCTAACCTGCCCTGCACCTAGATTCTTGGTGTAAGCGTACCTCAATTGAGTATTTAACAACACCACTGGCTATTAATATCATAGGAGCTAAACTCTATATACTTATTAACTCCTTGTGTTACCTCTGCAACTCTTGCCTAACAAACTAATTCTGGCACAAGGATGAACTGATCCTTCTAACACATGGGTAAACTTTTTAATGTTAAGGAAAATATCAGTAGGTTTATGGTATTTTATAACTCCTTCAGGTAGGTAAAGGTAAGATGCTTAAAATTTATAGCCACTTGGATAACGAAGATGCTGACTTGATATCTGGTGCATAAAATTTTGAGAAATAGGATGTTAGCTTATGTTCAGCAATTCCCCTGATATATTTGTTGGTGAATGCTTCATAATATTTATTGGCAGTATTCCTCTCCATGAAAGATTTGAAAAAGCTGTTTACAACCTTAGCATTTATAGATCAAGCAAGCTCTCTCACCTGTGATGTAATTTTATCAAATTGTTGAATGTTCTCATGTGGCTGTATGGACAACCATTTAATTATTGATTGTTCTCATGAGTCGTATATTTTGACTGATGCAAACAATTTTCTTGAGACTATGTGATGCTAATTAAACTTTTATCTCAGTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCT</genome_strand>
        <mrna_strand>GCACG-AG--GTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281411" ref_strand="+" ref_description="SGN-E281411 [cLEL-1-C19](-)">
      <seq>agatgtcatcaaagccattgccggttcgtaaatctacatgaaagggtagggcatgaggaatggcttccagtaggcgctcaggtgcgggattggtgtggtaggtaaaggctaacgagagagcatatggaagagtattttgggttgccgtgaattcctgcagaagatgctgacccaagtaacctgtgccaccaactatcaatatcttcttgctactcattttcaatttctgtgagatctcttagcttctccactgatttctacaatcgtgatgtcgtatcttggaaaagcaatgcagtttttatggggccaaggagtttgctgtgcctactgatgagagtcacagttcgttggacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="1151" stop="193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="851" g_stop="490" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E281411" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="851" e_stop="490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTCATCAAAGCCATTGCCGGTTCGTAAATCTACATGAAAGGGTAGGGCATGAGGAATGGCTTCCAGTAGGCGCTCAGGTGGGGGATTGGTGTGGTAGGTAAAGGCTAACGAGAGAGCATATGGAAGAGTATTTTGGGTTGCCGTGAATTCCTGCAGAAGATGCTGACCCAAGTAACCTGTGCCACCAACTATCAATATCTTCTTGCTACTCATTTTCAATTTCTGTGAGATCTCTTAGCTTCTCCACTGATTTCTACAATCGTAAT-TCGTATCTTGGAAAAGCAATGCAGTTTTTATGGGGCCAAGGAGTTTGCTGTGCCTACTGATGAGAGTCACAGTTCGTTGGACTGCAGCGTGC</genome_strand>
        <mrna_strand>AGATGTCATCAAAGCCATTGCCGGTTCGTAAATCTACATGAAAGGGTAGGGCATGAGGAATGGCTTCCAGTAGGCGCTCAGGTGCGGGATTGGTGTGGTAGGTAAAGGCTAACGAGAGAGCATATGGAAGAGTATTTTGGGTTGCCGTGAATTCCTGCAGAAGATGCTGACCCAAGTAACCTGTGCCACCAACTATCAATATCTTCTTGCTACTCATTTTCAATTTCTGTGAGATCTCTTAGCTTCTCCACTGATTTCTACAATCGTGATGTCGTATCTTGGAAAAGCAATGCAGTTTTTATGGGGCCAAGGAGTTTGCTGTGCCTACTGATGAGAGTCACAGTTCGTTGGAC--C-TCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235549" ref_strand="+" ref_description="SGN-E235549 [cLED-11-B20]">
      <seq>caacgaactgtgactctcatcagtaggcacagcaaactccttggccccataaaaactgcattgcttttccaagatacgaattacgattgtagaaatcagtggagaagctaagagatctcacagaaattgaaaatgagtagcaagaagatattgatagttggtggcacaggttacttgggtcagcatcttctgcaggaattcacggcaacccaaaatactcttccatatgctctctcgttagcctttacctaccacaccaatcccccacctgagcgcctactggaagccattcctcatgccctaccctttcatgtagatttacgaaccggcaatggctttgatgacatctcacaaaattttgggcagtttacgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgcaaattactcaaattttgcaattttgaggagcagtattatttatggacctcagactgtctcccctgtcccaaaatcacttccagttcagtggatggatagtgttcttgcaaagggagaagccatggatttttttcacgatgaattccgttgtcctgtctatgtgaaggatcttgtgaccatcatatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="203" stop="4062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="503" g_stop="868" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2898" g_stop="3085" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="554" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3662" g_stop="3762" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="655" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E235549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="503" e_stop="868"/>
          <exon e_start="2898" e_stop="3085"/>
          <exon e_start="3662" e_stop="3762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAGGTATGAATTTTACACTACAAAGTTACTAGAGATTCCATCTTTCTCTTTTAGGGTTTCAAGAATTGCAATTATTTTGCTTGCATTTTCAGTTTTGGTGATTGATAGCATCTTACGAATTGTTTGTCTAGTTTTTTGGGGTGGAAGTGTAAAACTTATGGTTCAAAGGTTCAACTAGTAATAGATTTTGAACACATAAATCCAATGGGTAATGGTAGAATTTTGATTTCGAACTCGAACTCATGAAGTTTACATTTTGAATTTCATGGTTTGCATTTTACTGTACACACTTACTAACGATTACGTTTTTCTTTTTCTCACTTGTATTTTGGTGATTGAGATTTGCATCTTCATATATATGTATATAAGATTTGAAGAAAGTTTTGGTATTTAATAAGAGAACTTATGTGTCGACTGATATCACTCAAGGCTGTGAATTTATTTAGGTGGTCTTTGCTGTCTGTTTGTTGTAATCTCGGATAAATACCTGAAGTGGCTGGTGGATTGTATAGTAGGTCAAATTTATTACTGAACCAGTTAAAATGACCATAATAGCTAATACCAAGTTTTGTAATGTGAATGAGCAGCCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAGGTAACACACGAGGAAATCATTGTAGTGACAACAGCTAATTTTTCACAAAAGTTAGAGAGTTTCTTGCTTCTGTATTGAGCTGGTTATGCTTCTTAGGCTAACTGTGTTGGTTTCTAATGTGGAGGAGAATGATAAAAGTCGACTTACTTTCATTGGTAGGGTTTGGTCATTGTTTCATTTATTTGGTACCGTTGGAAAAAAGTAGATGATGAAAATAGTAAAATGGACGTACTTCATTCCTCTGTAGGACTTCTGAGAGTGAAAAGTTGCATAGCTGATTACACAAGTCCTCAGCTATTGCCACACTCCACTTCTGCTTGGTTACCTGGCAGCCAATTCTTCCCTCATCTTACAACTCAGCTTCAATGTTGCTTTAGAGCCTTCGAATCCGTCTCCCCACTGATCTCCTTTTTCTTTTGTTAAAAAAAGGATCACCTATTTCATCAGATTTTAAAGTTTATCCACTCATTTAACTTTTGAGTTAGACGCAAAGATGCAATTTTTGGCATTTCTTAACAATTGATATAGCACTTTGCCAGTTTTATTTGTTATTTAGTTACACACTCTTCAAGATAATATAGCCAATGGGCAATGAGGTGCATGTCTTAGAGCTTTTGTGCCTGCCCGTAAGTGTCTCCTAAGCGAGATGTTGCGCCTAACCTGCCCTGCACCTAGATTCTTGGTGTAAGCGTACCTCAATTGAGTATTTAACAACACCACTGGCTATTAATATCATAGGAGCTAAACTCTATATACTTATTAACTCCTTGTGTTACCTCTGCAACTCTTGCCTAACAAACTAATTCTGGCACAAGGATGAACTGATCCTTCTAACACATGGGTAAACTTTTTAATGTTAAGGAAAATATCAGTAGGTTTATGGTATTTTATAACTCCTTCAGGTAGGTAAAGGTAAGATGCTTAAAATTTATAGCCACTTGGATAACGAAGATGCTGACTTGATATCTGGTGCATAAAATTTTGAGAAATAGGATGTTAGCTTATGTTCAGCAATTCCCCTGATATATTTGTTGGTGAATGCTTCATAATATTTATTGGCAGTATTCCTCTCCATGAAAGATTTGAAAAAGCTGTTTACAACCTTAGCATTTATAGATCAAGCAAGCTCTCTCACCTGTGATGTAATTTTATCAAATTGTTGAATGTTCTCATGTGGCTGTATGGACAACCATTTAATTATTGATTGTTCTCATGAGTCGTATATTTTGACTGATGCAAACAATTTTCTTGAGACTATGTGATGCTAATTAAACTTTTATCTCAGTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAGGTGAATACAATGAACTTCACCTTGTACTTGCACTTGTCCGACTTCATTAAAGGGCTGTTATTGTTCAGTAGAATGAGTGGGGGCAATAGTAGCCTCCGTGCCTTTTCTTTTGTGTGATTTGCAATTTAAACACGATATATCTTTTTTTTTGAAGCTTAACCTAATCACTTCATATTATGTCACGCTTTCCTGCTGTTTGGCCTGTATCTAGATTTAAACTTGATGTTGACTTTATTTTTTTTTAAAAAAAAAACAAAGTTGATATTGAGATGTATTCATGCTTGCAAATTATATTTAGCATTCTATATGCGATTACTATTGAATTCCATCTATTTATCCCCTTTTTTTGGACTCAATGGTCATACCATGGGGGTGAGTGGCTCTATTGAGCTTTATAATATAGTACTGTTGTTACATCCAATTGAGCATAAGATTGAATGTTACTCATGATTCTGTTATGATACAACAACAGAAAAAATTGTATCTAAATCCCAAGCAATTCTATTATGATATATGACACATTAAATCACTCGACTACTGGGCTTTGAGCTGATGTTTCACATGAAAATCATGCAGTGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGAC</genome_strand>
        <mrna_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367816" ref_strand="+" ref_description="SGN-E367816 [TUS-22-A15]">
      <seq>caacgaactgtgactctcatcagtaggcacagcaaactccttggccccataaaaactgcattgcttttccaagatacgaattacgattgtagaaatcagtggagaagctaagagatctcacagaaattgaaaatgagtagcaagaagatattgatagttggtggcacaggttacttgggtcagcatcttctgcaggaattcacggcaacccaaaatactcttccatatgctctctcgttagcctttacctaccacaccaatcccccacctgagcgcctactggaagccattcctcatgccctaccctttcatgtagatttacgaaccggcaatggctttgatgacatctcacaaaattttgggcagtttacgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgcaaattactcaaattttgcaattttgaggagcagtattatttatggacctcagactgtctcccctgttccaaaatcacttccagttcagtggatggatagtgttcttgcacagggagaagccatggatttttttcacgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="203" stop="4016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="503" g_stop="868" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2898" g_stop="3085" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="554" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3662" g_stop="3716" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="609" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E367816" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="503" e_stop="868"/>
          <exon e_start="2898" e_stop="3085"/>
          <exon e_start="3662" e_stop="3716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAGGTATGAATTTTACACTACAAAGTTACTAGAGATTCCATCTTTCTCTTTTAGGGTTTCAAGAATTGCAATTATTTTGCTTGCATTTTCAGTTTTGGTGATTGATAGCATCTTACGAATTGTTTGTCTAGTTTTTTGGGGTGGAAGTGTAAAACTTATGGTTCAAAGGTTCAACTAGTAATAGATTTTGAACACATAAATCCAATGGGTAATGGTAGAATTTTGATTTCGAACTCGAACTCATGAAGTTTACATTTTGAATTTCATGGTTTGCATTTTACTGTACACACTTACTAACGATTACGTTTTTCTTTTTCTCACTTGTATTTTGGTGATTGAGATTTGCATCTTCATATATATGTATATAAGATTTGAAGAAAGTTTTGGTATTTAATAAGAGAACTTATGTGTCGACTGATATCACTCAAGGCTGTGAATTTATTTAGGTGGTCTTTGCTGTCTGTTTGTTGTAATCTCGGATAAATACCTGAAGTGGCTGGTGGATTGTATAGTAGGTCAAATTTATTACTGAACCAGTTAAAATGACCATAATAGCTAATACCAAGTTTTGTAATGTGAATGAGCAGCCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAGGTAACACACGAGGAAATCATTGTAGTGACAACAGCTAATTTTTCACAAAAGTTAGAGAGTTTCTTGCTTCTGTATTGAGCTGGTTATGCTTCTTAGGCTAACTGTGTTGGTTTCTAATGTGGAGGAGAATGATAAAAGTCGACTTACTTTCATTGGTAGGGTTTGGTCATTGTTTCATTTATTTGGTACCGTTGGAAAAAAGTAGATGATGAAAATAGTAAAATGGACGTACTTCATTCCTCTGTAGGACTTCTGAGAGTGAAAAGTTGCATAGCTGATTACACAAGTCCTCAGCTATTGCCACACTCCACTTCTGCTTGGTTACCTGGCAGCCAATTCTTCCCTCATCTTACAACTCAGCTTCAATGTTGCTTTAGAGCCTTCGAATCCGTCTCCCCACTGATCTCCTTTTTCTTTTGTTAAAAAAAGGATCACCTATTTCATCAGATTTTAAAGTTTATCCACTCATTTAACTTTTGAGTTAGACGCAAAGATGCAATTTTTGGCATTTCTTAACAATTGATATAGCACTTTGCCAGTTTTATTTGTTATTTAGTTACACACTCTTCAAGATAATATAGCCAATGGGCAATGAGGTGCATGTCTTAGAGCTTTTGTGCCTGCCCGTAAGTGTCTCCTAAGCGAGATGTTGCGCCTAACCTGCCCTGCACCTAGATTCTTGGTGTAAGCGTACCTCAATTGAGTATTTAACAACACCACTGGCTATTAATATCATAGGAGCTAAACTCTATATACTTATTAACTCCTTGTGTTACCTCTGCAACTCTTGCCTAACAAACTAATTCTGGCACAAGGATGAACTGATCCTTCTAACACATGGGTAAACTTTTTAATGTTAAGGAAAATATCAGTAGGTTTATGGTATTTTATAACTCCTTCAGGTAGGTAAAGGTAAGATGCTTAAAATTTATAGCCACTTGGATAACGAAGATGCTGACTTGATATCTGGTGCATAAAATTTTGAGAAATAGGATGTTAGCTTATGTTCAGCAATTCCCCTGATATATTTGTTGGTGAATGCTTCATAATATTTATTGGCAGTATTCCTCTCCATGAAAGATTTGAAAAAGCTGTTTACAACCTTAGCATTTATAGATCAAGCAAGCTCTCTCACCTGTGATGTAATTTTATCAAATTGTTGAATGTTCTCATGTGGCTGTATGGACAACCATTTAATTATTGATTGTTCTCATGAGTCGTATATTTTGACTGATGCAAACAATTTTCTTGAGACTATGTGATGCTAATTAAACTTTTATCTCAGTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAGGTGAATACAATGAACTTCACCTTGTACTTGCACTTGTCCGACTTCATTAAAGGGCTGTTATTGTTCAGTAGAATGAGTGGGGGCAATAGTAGCCTCCGTGCCTTTTCTTTTGTGTGATTTGCAATTTAAACACGATATATCTTTTTTTTTGAAGCTTAACCTAATCACTTCATATTATGTCACGCTTTCCTGCTGTTTGGCCTGTATCTAGATTTAAACTTGATGTTGACTTTATTTTTTTTTAAAAAAAAAACAAAGTTGATATTGAGATGTATTCATGCTTGCAAATTATATTTAGCATTCTATATGCGATTACTATTGAATTCCATCTATTTATCCCCTTTTTTTGGACTCAATGGTCATACCATGGGGGTGAGTGGCTCTATTGAGCTTTATAATATAGTACTGTTGTTACATCCAATTGAGCATAAGATTGAATGTTACTCATGATTCTGTTATGATACAACAACAGAAAAAATTGTATCTAAATCCCAAGCAATTCTATTATGATATATGACACATTAAATCACTCGACTACTGGGCTTTGAGCTGATGTTTCACATGAAAATCATGCAGTGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAAT</genome_strand>
        <mrna_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTTCCAAAATCACTTCCAGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGATAGTGTTCTTGCACAGGGAGAAGCCATGGATTTTTTTCACGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242460" ref_strand="+" ref_description="SGN-E242460 [cLED-30-P4]">
      <seq>caacgaactgtgactctcatcagtaggcacagcaaactccttggccccataaaaactgcattgcttttccaagatacgaattacgattgtagaaatcagtggagaagctaagagatctcacagaaattgaaaatgagtagcaagaagatattgatagttggtggcacaggttacttgggtcagcatcttctgcaggaattcacggcaacccaaaatactcttccatatgctctctcgttagcctttacctaccacaccaatcccccacctgagcgcctactggaagccattcctcatgccctaccctttcatgtagatttacgaaccggcaatggctttgatgacatctcacaaaattttgggcagtttacgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgcaaattactcaaattttgcaattttgaggagcagtattatttatggacctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="203" stop="3349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="503" g_stop="868" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2898" g_stop="3049" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="518" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E242460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="503" e_stop="868"/>
          <exon e_start="2898" e_stop="3049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAGGTATGAATTTTACACTACAAAGTTACTAGAGATTCCATCTTTCTCTTTTAGGGTTTCAAGAATTGCAATTATTTTGCTTGCATTTTCAGTTTTGGTGATTGATAGCATCTTACGAATTGTTTGTCTAGTTTTTTGGGGTGGAAGTGTAAAACTTATGGTTCAAAGGTTCAACTAGTAATAGATTTTGAACACATAAATCCAATGGGTAATGGTAGAATTTTGATTTCGAACTCGAACTCATGAAGTTTACATTTTGAATTTCATGGTTTGCATTTTACTGTACACACTTACTAACGATTACGTTTTTCTTTTTCTCACTTGTATTTTGGTGATTGAGATTTGCATCTTCATATATATGTATATAAGATTTGAAGAAAGTTTTGGTATTTAATAAGAGAACTTATGTGTCGACTGATATCACTCAAGGCTGTGAATTTATTTAGGTGGTCTTTGCTGTCTGTTTGTTGTAATCTCGGATAAATACCTGAAGTGGCTGGTGGATTGTATAGTAGGTCAAATTTATTACTGAACCAGTTAAAATGACCATAATAGCTAATACCAAGTTTTGTAATGTGAATGAGCAGCCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAGGTAACACACGAGGAAATCATTGTAGTGACAACAGCTAATTTTTCACAAAAGTTAGAGAGTTTCTTGCTTCTGTATTGAGCTGGTTATGCTTCTTAGGCTAACTGTGTTGGTTTCTAATGTGGAGGAGAATGATAAAAGTCGACTTACTTTCATTGGTAGGGTTTGGTCATTGTTTCATTTATTTGGTACCGTTGGAAAAAAGTAGATGATGAAAATAGTAAAATGGACGTACTTCATTCCTCTGTAGGACTTCTGAGAGTGAAAAGTTGCATAGCTGATTACACAAGTCCTCAGCTATTGCCACACTCCACTTCTGCTTGGTTACCTGGCAGCCAATTCTTCCCTCATCTTACAACTCAGCTTCAATGTTGCTTTAGAGCCTTCGAATCCGTCTCCCCACTGATCTCCTTTTTCTTTTGTTAAAAAAAGGATCACCTATTTCATCAGATTTTAAAGTTTATCCACTCATTTAACTTTTGAGTTAGACGCAAAGATGCAATTTTTGGCATTTCTTAACAATTGATATAGCACTTTGCCAGTTTTATTTGTTATTTAGTTACACACTCTTCAAGATAATATAGCCAATGGGCAATGAGGTGCATGTCTTAGAGCTTTTGTGCCTGCCCGTAAGTGTCTCCTAAGCGAGATGTTGCGCCTAACCTGCCCTGCACCTAGATTCTTGGTGTAAGCGTACCTCAATTGAGTATTTAACAACACCACTGGCTATTAATATCATAGGAGCTAAACTCTATATACTTATTAACTCCTTGTGTTACCTCTGCAACTCTTGCCTAACAAACTAATTCTGGCACAAGGATGAACTGATCCTTCTAACACATGGGTAAACTTTTTAATGTTAAGGAAAATATCAGTAGGTTTATGGTATTTTATAACTCCTTCAGGTAGGTAAAGGTAAGATGCTTAAAATTTATAGCCACTTGGATAACGAAGATGCTGACTTGATATCTGGTGCATAAAATTTTGAGAAATAGGATGTTAGCTTATGTTCAGCAATTCCCCTGATATATTTGTTGGTGAATGCTTCATAATATTTATTGGCAGTATTCCTCTCCATGAAAGATTTGAAAAAGCTGTTTACAACCTTAGCATTTATAGATCAAGCAAGCTCTCTCACCTGTGATGTAATTTTATCAAATTGTTGAATGTTCTCATGTGGCTGTATGGACAACCATTTAATTATTGATTGTTCTCATGAGTCGTATATTTTGACTGATGCAAACAATTTTCTTGAGACTATGTGATGCTAATTAAACTTTTATCTCAGTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAG</genome_strand>
        <mrna_strand>CAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559340" ref_strand="+" ref_description="SGN-E559340 [18821]">
      <seq>gtttatgaagggaccaaatccttctacaaggaagatgatgagacccttcctgtgaatgtttatggaagatcaaaggtagcagcagagcaatttatatctgtaaattactcaaattttgcaattttgaggagcagtattatttatggacctcagactgtctcccctgtaccaaaatcacttccagttcagtggatggatagtgttcttgcaaagggagaagccatggatttttttcatgatgagttccgttgtcctgtctatgttaaggatcttgtgaccatcgtctggactctgacaagtagatggatctcagagaaggagccaatgcagttacttctgaacgtgggtggacctgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaaatctccagcagatatatccatggatatcaccagattaattcagacactcgatatgtcaccaacttcatttagggatggtgttaaattgacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctctttgccagaattctcatctttgtgtgtattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="2597" stop="5057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2897" g_stop="3085" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3662" g_stop="3785" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="313" r_length="124" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441">
            <donor d_prob="0.909" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4227" g_stop="4357" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="444" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4570" g_stop="4757" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="632" r_length="188" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E559340" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2897" e_stop="3085"/>
          <exon e_start="3662" e_stop="3785"/>
          <exon e_start="4227" e_stop="4357"/>
          <exon e_start="4570" e_stop="4757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAGGTGAATACAATGAACTTCACCTTGTACTTGCACTTGTCCGACTTCATTAAAGGGCTGTTATTGTTCAGTAGAATGAGTGGGGGCAATAGTAGCCTCCGTGCCTTTTCTTTTGTGTGATTTGCAATTTAAACACGATATATCTTTTTTTTTGAAGCTTAACCTAATCACTTCATATTATGTCACGCTTTCCTGCTGTTTGGCCTGTATCTAGATTTAAACTTGATGTTGACTTTATTTTTTTTTAAAAAAAAAACAAAGTTGATATTGAGATGTATTCATGCTTGCAAATTATATTTAGCATTCTATATGCGATTACTATTGAATTCCATCTATTTATCCCCTTTTTTTGGACTCAATGGTCATACCATGGGGGTGAGTGGCTCTATTGAGCTTTATAATATAGTACTGTTGTTACATCCAATTGAGCATAAGATTGAATGTTACTCATGATTCTGTTATGATACAACAACAGAAAAAATTGTATCTAAATCCCAAGCAATTCTATTATGATATATGACACATTAAATCACTCGACTACTGGGCTTTGAGCTGATGTTTCACATGAAAATCATGCAGTGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAGGTTTGACATGCTTTGACCCTCTAGACTGATTTGCCTTGATCACCCTCTGTCTGCATTATCAAATACGGGATACTTAACAACCGTCTGAAATTTCACTATGATCTTCTAGGATTGGTTCTTTCTTTGTGGTAGTTTTCCACATATTTAATACAACATTTCTTGCTGCGTGAGGATTTGATTCTTTTGAAGTATTATGATTGAGTTAACTGGAATATAATCCAAAAAACAAATAATTCAGCTCAATGTTCAATGTGGTGGTTCACTATGACTCGAGATAAGTTCTACAATGTGACTCTATCAATGCTCATGACCGGTTTATAGTTGAAGTTATGTCAGACTTTTTCCCTTTAAAGCCTCTAGTAAAGTTTCTGATACAATTTACCTGATTTTCTATCTCTCCTTGACTTTTCCGTTTTATCACATGATATGTGTTGTTTCTAGAGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGT</genome_strand>
        <mrna_strand>GTTTATGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGTAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTACCAAAATCACTTCCAGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCATGATGAGTTCCGTTGTCCTGTCTATGTTAAGGATCTTGTGACCATCGTCTGGACTCTGACAAGTAGATGGATCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAATCTCCAGCAGATATATCCATGGATATCACCAGATTAATTCAGACACTCGATATGTCACCAACTTCATTTAGGGATGGTGTTAAATTGACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTGCCAGAATTCTCATCTTTGTGTGTATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367815" ref_strand="+" ref_description="SGN-E367815 [TUS-22-A15](-)">
      <seq>caaaggtaccagcagagcaatttatatctgcaaattactcaaattttgcaattttgaggagcagtattatttatggacctcagactgtctcccctgtcccaaaatcacttccagttcagtggatgaatagtgttcttgcaaagggagaagccatggatttttttcacgatgaattccgttgtcctgtctatgtgaaggatcttgtgaccatcatatggaccctgacaaataaatggatctcagagaaggagccaatgcagttacttctgaacgtgggtggacctgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaagtctccagcagatatatccatggataccaacagattaattcagacactcaatatgtcaccaacttcatttaggaatggtgttaagttaacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctcttttccagaatgctcatcttcatatgtattcgttttgtcaaattatgttcattttttcaaaaatataatttgacttcagaatttatcaaaagaatttggaccttcgcactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="2667" stop="5137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2967" g_stop="3085" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3662" g_stop="3785" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="243" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4227" g_stop="4357" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="374" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4570" g_stop="4844" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="649" r_length="275" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E367815" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2967" e_stop="3085"/>
          <exon e_start="3662" e_stop="3785"/>
          <exon e_start="4227" e_stop="4357"/>
          <exon e_start="4570" e_stop="4844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAGGTGAATACAATGAACTTCACCTTGTACTTGCACTTGTCCGACTTCATTAAAGGGCTGTTATTGTTCAGTAGAATGAGTGGGGGCAATAGTAGCCTCCGTGCCTTTTCTTTTGTGTGATTTGCAATTTAAACACGATATATCTTTTTTTTTGAAGCTTAACCTAATCACTTCATATTATGTCACGCTTTCCTGCTGTTTGGCCTGTATCTAGATTTAAACTTGATGTTGACTTTATTTTTTTTTAAAAAAAAAACAAAGTTGATATTGAGATGTATTCATGCTTGCAAATTATATTTAGCATTCTATATGCGATTACTATTGAATTCCATCTATTTATCCCCTTTTTTTGGACTCAATGGTCATACCATGGGGGTGAGTGGCTCTATTGAGCTTTATAATATAGTACTGTTGTTACATCCAATTGAGCATAAGATTGAATGTTACTCATGATTCTGTTATGATACAACAACAGAAAAAATTGTATCTAAATCCCAAGCAATTCTATTATGATATATGACACATTAAATCACTCGACTACTGGGCTTTGAGCTGATGTTTCACATGAAAATCATGCAGTGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAGGTTTGACATGCTTTGACCCTCTAGACTGATTTGCCTTGATCACCCTCTGTCTGCATTATCAAATACGGGATACTTAACAACCGTCTGAAATTTCACTATGATCTTCTAGGATTGGTTCTTTCTTTGTGGTAGTTTTCCACATATTTAATACAACATTTCTTGCTGCGTGAGGATTTGATTCTTTTGAAGTATTATGATTGAGTTAACTGGAATATAATCCAAAAAACAAATAATTCAGCTCAATGTTCAATGTGGTGGTTCACTATGACTCGAGATAAGTTCTACAATGTGACTCTATCAATGCTCATGACCGGTTTATAGTTGAAGTTATGTCAGACTTTTTCCCTTTAAAGCCTCTAGTAAAGTTTCTGATACAATTTACCTGATTTTCTATCTCTCCTTGACTTTTCCGTTTTATCACATGATATGTGTTGTTTCTAGAGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATG</genome_strand>
        <mrna_strand>CAAAGGTACCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243885" ref_strand="+" ref_description="SGN-E243885 [cLED-35-K18]">
      <seq>attatttatggacctcagactgtctcccctgtcccaaaatcacttccagttcagtggatggatagtgttcttgcaaagggagaagccatggatttttttcacgatgaattccgttgtcctgtctatgtgaaggatcttgtgaccatcatatggaccctgacaaataaatggatctcaggtttgacatgctttgaccctctagactgatttgccttgatcaccctctgtctgcattatcaaatacgggatacttaacaaccgtctgaaatttcactatgatcttctaggattggttctttctttgtggtagttttccacatatttaatacaacatttcttgctgcgtgaggatttgattcttttgaagtattatgattgagttaactggaatataatccaaaaaacaaataattcagctcaatgttcaatgtggtggttcactatgactcgagataagttctacaatgtgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="2732" stop="4381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3032" g_stop="3085" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3662" g_stop="4081" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="474" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E243885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3032" e_stop="3085"/>
          <exon e_start="3662" e_stop="4081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAGGTGAATACAATGAACTTCACCTTGTACTTGCACTTGTCCGACTTCATTAAAGGGCTGTTATTGTTCAGTAGAATGAGTGGGGGCAATAGTAGCCTCCGTGCCTTTTCTTTTGTGTGATTTGCAATTTAAACACGATATATCTTTTTTTTTGAAGCTTAACCTAATCACTTCATATTATGTCACGCTTTCCTGCTGTTTGGCCTGTATCTAGATTTAAACTTGATGTTGACTTTATTTTTTTTTAAAAAAAAAACAAAGTTGATATTGAGATGTATTCATGCTTGCAAATTATATTTAGCATTCTATATGCGATTACTATTGAATTCCATCTATTTATCCCCTTTTTTTGGACTCAATGGTCATACCATGGGGGTGAGTGGCTCTATTGAGCTTTATAATATAGTACTGTTGTTACATCCAATTGAGCATAAGATTGAATGTTACTCATGATTCTGTTATGATACAACAACAGAAAAAATTGTATCTAAATCCCAAGCAATTCTATTATGATATATGACACATTAAATCACTCGACTACTGGGCTTTGAGCTGATGTTTCACATGAAAATCATGCAGTGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAGGTTTGACATGCTTTGACCCTCTAGACTGATTTGCCTTGATCACCCTCTGTCTGCATTATCAAATACGGGATACTTAACAACCGTCTGAAATTTCACTATGATCTTCTAGGATTGGTTCTTTCTTTGTGGTAGTTTTCCACATATTTAATACAACATTTCTTGCTGCGTGAGGATTTGATTCTTTTGAAGTATTATGATTGAGTTAACTGGAATATAATCCAAAAAACAAATAATTCAGCTCAATGTTCAATGTGGTGGTTCACTATGACTCGAGATAAGTTCTACAATGTGACTCT</genome_strand>
        <mrna_strand>ATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAGGTTTGACATGCTTTGACCCTCTAGACTGATTTGCCTTGATCACCCTCTGTCTGCATTATCAAATACGGGATACTTAACAACCGTCTGAAATTTCACTATGATCTTCTAGGATTGGTTCTTTCTTTGTGGTAGTTTTCCACATATTTAATACAACATTTCTTGCTGCGTGAGGATTTGATTCTTTTGAAGTATTATGATTGAGTTAACTGGAATATAATCCAAAAAACAAATAATTCAGCTCAATGTTCAATGTGGTGGTTCACTATGACTCGAGATAAGTTCTACAATGTGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401567" ref_strand="+" ref_description="SGN-E401567 [PPC-4-J13]">
      <seq>tctgaacgtgggtggacctgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaaatctccagcagatatatccatggatatcaccagattaattcagacactcgatatgtcaccaacttcatttagggatggtgttaaattgacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctctttgccagaattctcatctttgtgtgtattcgttttgtcaaattatgttcatcttttcagaaatataatttgacttcacaatttgtcaaaagattttggatcttcgcactcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="3949" stop="20286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4249" g_stop="4357" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4570" g_stop="4838" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="378" r_length="269" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4839" i_stop="5033" i_length="195">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5034" g_stop="5046" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="391" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E401567" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4249" e_stop="4357"/>
          <exon e_start="4570" e_stop="4838"/>
          <exon e_start="5034" e_stop="5046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATGACCTAATGGTTTAGAATCATGATGTTTGCATTCAAATTTAAGTGGCCGAGTTACAAACTGGCTCAGACATCTTCTTTATCAAAAAATAAAATAAAGTTTAGCTTCAGACACAAATGTATCATAAAATGTCAAAGATTACAAAATCTATATTTAGTGATTTTAATGTCAGTAGAATCTTAATTTTCGTAGAAAGTTAAAACAA</genome_strand>
        <mrna_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAATCTCCAGCAGATATATCCATGGATATCACCAGATTAATTCAGACACTCGATATGTCACCAACTTCATTTAGGGATGGTGTTAAATTGACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTGCCAGAATTCTCATCTTTGTGTGTATTCGTTTTGTCAAATTATGTTCATCTTTTCAGAAATATAATTTGACTTCACAATTTGTCAAAAGATTTTGGATCTTCGCACTCAAA...................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432364" ref_strand="+" ref_description="SGN-E432364 [STM-56-N22]">
      <seq>tctgaacgtgggtggacctgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaaatctccagcagatatatccatggatatcaccagattaattcagacactcgatatgtcaccaacttcatttagggatggtgttaaattgacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctctttgccagaattctcatctttgtgtgtattcgttttgtcaaattatgttcatcttttcagaaatataatttgacttcacaatttgtcaaaagattttggatcttcgcactcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="3949" stop="20286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4249" g_stop="4357" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4570" g_stop="4838" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="378" r_length="269" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4839" i_stop="5033" i_length="195">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5034" g_stop="5046" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="391" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E432364" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4249" e_stop="4357"/>
          <exon e_start="4570" e_stop="4838"/>
          <exon e_start="5034" e_stop="5046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATGACCTAATGGTTTAGAATCATGATGTTTGCATTCAAATTTAAGTGGCCGAGTTACAAACTGGCTCAGACATCTTCTTTATCAAAAAATAAAATAAAGTTTAGCTTCAGACACAAATGTATCATAAAATGTCAAAGATTACAAAATCTATATTTAGTGATTTTAATGTCAGTAGAATCTTAATTTTCGTAGAAAGTTAAAACAA</genome_strand>
        <mrna_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAATCTCCAGCAGATATATCCATGGATATCACCAGATTAATTCAGACACTCGATATGTCACCAACTTCATTTAGGGATGGTGTTAAATTGACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTGCCAGAATTCTCATCTTTGTGTGTATTCGTTTTGTCAAATTATGTTCATCTTTTCAGAAATATAATTTGACTTCACAATTTGTCAAAAGATTTTGGATCTTCGCACTCAAA...................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432365" ref_strand="-" ref_description="SGN-E432365 [STM-56-N22]">
      <seq>tctgaacgtgggtggacctgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaaatctccagcagatatatccatggatatcaccagattaattcagacactcgatatgtcaccaacttcatttagggatggtgttaaattgacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctctttgccagaattctcatctttgtgtgtattcgttttgtcaaattatgttcatcttttcagaaatataatttgacttcacaatttgtcaaaagatgaaaaatcttcgcactcaaacaccctttggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="3949" stop="5117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4249" g_stop="4357" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4570" g_stop="4817" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="357" r_length="248" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E432365" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4249" e_stop="4357"/>
          <exon e_start="4570" e_stop="4817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGA</genome_strand>
        <mrna_strand>TCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAATCTCCAGCAGATATATCCATGGATATCACCAGATTAATTCAGACACTCGATATGTCACCAACTTCATTTAGGGATGGTGTTAAATTGACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTGCCAGAATTCTCATCTTTGTGTGTATTCGTTTTGTCAAATTATGTTCATCTTTTCAGAAATATAATTTGACTTCACAATTTGTCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281210" ref_strand="-" ref_description="SGN-E281210 [cLEL-1-C19]">
      <seq>tgatcgagtttccagggttcagatggctgaagctgttgcacatattcgaggttataatttgtcattgatcaaatcagtatcctcatcaactgttaaccgcggcgttaagtctccagcagatatatccatggataccaacagattaattcagacactcaatatgtcaccaacttcatttaggaatggtgttaagttaacacttgaagctgaatttgcttctgcatcatagtagtttttgtcttgctcttttccagaatgctcatcttcatatgtattcgttttgtcaaattatggtcattttttcaaaaatataatttgacttcagaatttatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="3967" stop="20285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4267" g_stop="4357" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4570" g_stop="4818" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="340" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4819" i_stop="5033" i_length="215">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5034" g_stop="5043" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="350" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E281210" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281210" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4267" e_stop="4357"/>
          <exon e_start="4570" e_stop="4818"/>
          <exon e_start="5034" e_stop="5043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACTGTAAGTAACATTGGTTTAACATTACATTGACATTTGCATGCACGCGCACAAACAAATTTTCAAAAAAAGTCTCTTTACTTTTTTCATTTACCTTCTAGCTTCTGTTGTGTTACACTACAAGCACAACAAAGTCCAAGAAAGTATCATCACTACTGTTTTTTTCCTTAAAACCACATACCTAACCTATGTGTGTTATTATCTGAACATTATAGGTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATGACCTAATGGTTTAGAATCATGATGTTTGCATTCAAATTTAAGTGGCCGAGTTACAAACTGGCTCAGACATCTTCTTTATCAAAAAATAAAATAAAGTTTAGCTTCAGACACAAATGTATCATAAAATGTCAAAGATTACAAAATCTATATTTAGTGATTTTAATGTCAGTAGAATCTTAATTTTCGTAGAAAGTTAAAA</genome_strand>
        <mrna_strand>TGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT....................................................................................................................................................................................................................GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGGTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAAAA.......................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570261" ref_strand="+" ref_description="SGN-E570261 [14817]">
      <seq>gaaaagtgaaaggaatataagcagcagcgttgcaaggagagtataaatatctggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacgggattcccaatgacggaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagacagtgttgtttcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggtttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaactggccttctactcaggtagacatgattgtgctgacagatggaagtcgtattcttggccttggcgatcttggagttcaggggataggtataccaattggaaaaacttgacatgtatgtagcagctgctggtatcaacccacaaagagtgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="7855" stop="13577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8154" g_stop="8206" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8207" i_stop="8318" i_length="112">
            <donor d_prob="0.825" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8319" g_stop="8456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="191" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="288" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="407" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="575" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13147" g_stop="13275" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="705" r_length="130" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E570261" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8154" e_stop="8206"/>
          <exon e_start="8319" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTAGAAGGAATATAAGCAGCAGCATTG-AAGGAGAGTATAAATATCTGGGTACTTGACTCTTTCACATATTCATGGAGTTGTAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGG-AAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA</genome_strand>
        <mrna_strand>GAAAAGTGAAAGGAATATAAGCAGCAGCGTTGCAAGGAGAGTATAAATATCT-G................................................................................................................GAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGGGATTCCCAATGACGGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGACAGTGTTGTTTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGTTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCTACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTGCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740881" ref_strand="+" ref_description="SGN-E740881 [LC23BB08]">
      <seq>ccgctttaatattcatggagttgtagtgtgcttcgtcttccactcaattctaagtttttctgattcaatttttactcgttttttttttatttatttgtataaggagcgtgcaatgtggaaagtggctcgatctgcggcgtcaactttccgccgtacgcggcggttatcgacggcaatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacaggattcccaatgacaaaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagaaagtgttgtctcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggcttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaactggccttccactcaggtagacatgattgtcctgacaaatggaagtcgtattcttggccttggcgatcttggagttcaggggataggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="7915" stop="13519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8214" g_stop="8456" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="338" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="457" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="625" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13219" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="698" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E740881" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8214" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTCACATATTCATGGAGTTGTAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTA</genome_strand>
        <mrna_strand>CCGCTTT-A-ATATTCATGGAGTTGTAGTGTGCTTCGTCTTCCACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAAAGTGGCTCGATCTGCGGCGTCAACTTTCCGCCGTACGCGGCGGTTATCGACGGCAATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGGATTCCCAATGACAAAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTCCTGACAAATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405829" ref_strand="+" ref_description="SGN-E405829 [PPI-1-B14]">
      <seq>ttcatcttcttcttgttgaactcgaattcaaagttttgttgattcaatttttacgcatttttttatttatataaggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacgggattcccaatgacggaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagacagtgttgtttcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggtttgtttagacgtccacgtggcatgtatttcagtgccaaagataanggagagatgatgtcaatgatcttcaactggccttctactcangtagacatgattgtgctgacagatggaagtcgtattcttggccttggcgatcttggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="8000" stop="13505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8238" g_stop="8456" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="310" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="429" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="597" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13205" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="656" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E405829" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8238" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTGTTCTTCATCTTCAACTC-AATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGT</genome_strand>
        <mrna_strand>TTCATCTTCTTCTTGTTGAACTCGAATTCAAAGTTTTGTTGATTCAATTTTTA--CG-CATTTTTTTATTTA--T--ATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGGGATTCCCAATGACGGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGACAGTGTTGTTTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGTTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAANGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCTACTCAN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTGCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322013" ref_strand="+" ref_description="SGN-E322013 [cTOB-29-N7]">
      <seq>tagtgttcttcatcttcaactcaattctaagtttttctgattcaatttttactcgttttttttttatttatttgtataaggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacaggattcccaatgacagaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagaaagtgttgtctcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggcttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaactggccttccactcaggtagacatgattgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="7939" stop="13464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8239" g_stop="8456" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="315" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="434" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="602" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13164" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="620" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E322013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8239" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTG</genome_strand>
        <mrna_strand>TAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474147" ref_strand="+" ref_description="SGN-E474147 [cSTB-34-J6]">
      <seq>atcttcttcttgttgaactcgaattcaaagttttgttgattcaatttttacgcatttttttatttatataaggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacgggattcccaatgacggaaagagatcgattgggtctacgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagacagtgttgtttcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggtttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaactggccttctactcaggtagacatgattgtgctgacagatggaagtcgtattcttggccttggcgatcttggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="8000" stop="13505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8241" g_stop="8456" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="307" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="426" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="594" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13205" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="653" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E474147" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8241" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTTCATCTTCAACTC-AATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGT</genome_strand>
        <mrna_strand>ATCTTCTTCTTGTTGAACTCGAATTCAAAGTTTTGTTGATTCAATTTTTA--CG-CATTTTTTTATTTA----TATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGGGATTCCCAATGACGGAAAGAGATCGATTGGGTCTACGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGACAGTGTTGTTTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGTTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCTACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTGCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319570" ref_strand="+" ref_description="SGN-E319570 [cTOB-15-B24]">
      <seq>ttcttcatcttcaactcaattcgtaagtttttctgattcaatttttactcgttttttttttatttatttgtataaggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacaggattcccaatgacagaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagaaagtgttgtctcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacaccgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggcttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="7944" stop="12289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8244" g_stop="8456" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="311" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="430" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="11989" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="584" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E319570" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8244" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="11989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATCTTCAACTCAATTC-TAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACT</genome_strand>
        <mrna_strand>TTCTTCATCTTCAACTCAATTCGTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACCGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689897" ref_strand="+" ref_description="SGN-E689897 [LH_Ea02B15]">
      <seq>cgttttcttcaactcaattctaagtttttctcattcaattcttactcggtttcttttttttttatttatataacgagcgtgaaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacaggattcccaatgacggaaagagatcgattgggtctgcgtggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagaaagtggtgtttcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggcttgtttaggcgtccacgtggcatgtatttcagtgcgaaagataagggagagatgatgtcaatgatcttcaactggccttccactcaggtagacatgattgtcctgacagacggaagtcgtattcttggccttggcgatcttggagttcaggggataggtataccaattggaaaacttgacatgtatgtagcagctgctggtatcaacccacaaagagtgctcccagttatgcttgatgtcgggaccaacaatcagaagcttctagaagatcctctttatcttggactgcgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="7946" stop="14114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8246" g_stop="8456" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="309" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="428" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="596" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13275" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="725" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13276" i_stop="13751" i_length="476">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13752" g_stop="13812" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="786" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E689897" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8246" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13275"/>
          <exon e_start="13752" e_stop="13812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTC-GTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGAGTATGTATGAGAATAACTGTTTGTTCAGCAATTTGACATTCATGAGCTATTATTATCAGTGTGTGGGTTGCATATGTTTTGTATCTTTTGCATATGCTGCTTTGGAAATCTGAAGTGCTATGACACATAGACGTTTCTCATGGATTTGACAAGGATATCAATCTGACTAACTAGCCTATCCAAAAAGACATAAAACAATATTAAATAAAGATGTGACTCCAGATTTAAAATGAGATTTGGTTTAAGTGTTAAGTAATGACTGCTAACACTGATGTTTGGTAAGTCTGCCTATGTCGTTTCTTATTAGTGTCTTGTACAGTTTAATCAAAATTGATAACCACTCAATCTGTTCTTTGAATAATAGAACTGGTGATTGTTATACTTCCCAAAAAAACAATTAACTCTTCCGTGTTATGATGTGCCTTCATGTTTAAAATATGATGTCTGCCAGATTTACCTATGCCTATGCTTTACAGGTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTT</genome_strand>
        <mrna_strand>CGTTTTCTTCAACTCAATTCTAAGTTTTTCTCATTCAATTCTTACTCGGTTTCTTTTTTTTTTATTTATATAACGAGCGTGAAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGGATTCCCAATGACGGAAAGAGATCGATTGGGTCTGCGTGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGGTGTTTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGGCGTCCACGTGGCATGTATTTCAGTGCGAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTCCTGACAGACGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCCAGTTATGCTTGATGTCGGGACCAACAATCAGAAGCTTCTAGAAGATCCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624128" ref_strand="+" ref_description="SGN-E624128 [GI|438130]">
      <seq>ctcgaattcaaagttttgttgattcaatttttacgcatttttttatttatataaggagcgtgcaatgtggagagtggctcgatctgcggcgtcgactttccgccgtacgcggcggttatcgacggcgatttcagctccatgtatcgtacacaagcgcggtgctgatattcttcatgatccttggttcaataaggacacgggattcccaatgacggaaagagatcgattgggtctgcgcggtctcctcccacctcgtgtaatatcatttgaacagcaatatgaccgcttcatggagtcatttcggtcacttgagaaaaatactgagggtcaaccagacagtgttgtttcgttagcaaaatggaggatcttaaacaggctgcatgacaggaatgagacactgtactaccgagttctaattgacaatatcaaagattttgctcccataatatacactccaacagtaggattggtttgccaaaactactctggtttgtttagacgtccacgtggcatgtatttcagtgccaaagataagggagagatgatgtcaatgatcttcaactggccttctactcaggtagacatgattgtgctgacagatggaagtcgtattcttggccttggcgatcttggagttcaggggataggtataccaattggaaaacttgacatgtatgtagcagctgctggtatcaacccacaaagagtgctcccagttatgcttgacgtcgggaccaacaatcagaagcttctagaagatcctctttatcttggactgcgacaacctaggttggaaggagaagaatatttgtcaatagttgatgaatttgtggaagctgttcatgctcgttggccaaaggctgttgtgcagtttgaggattttcaagcaaagtgggcttttgagacactggatcgctatcggaaaaagttttgcatgttcaatgatgatatacagggaacagctggtgttgctcttgctgggctattaggaactgttagggcacagggccggccactgactgattttgccaaccaaaagatagtggtagttggagcaggaagtgcggggcttggtgttcttaagatggcattacaagccgtttcaagaatgactggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcagggctcgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgatgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaaaagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgatctggtcgtctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtattaggtgtacaattacaaggacaaatgttgctgaaccacgaaagagacaagggctcttcaaatatttcatttttttgttgttagccattcttgtttatctcatgaagcatatgtaacctttgatttgactaggagatgtatttgttatctcagaataaaagctgatactttctctcagcaccaccacctattgaactgtattcatttttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="8000" stop="19170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8258" g_stop="8456" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9722" g_stop="9818" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="290" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11619" g_stop="11737" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="409" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11836" g_stop="12003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="577" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13147" g_stop="13275" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="706" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13276" i_stop="13751" i_length="476">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13752" g_stop="13812" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="767" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13813" i_stop="14529" i_length="717">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.546" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14530" g_stop="14633" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="871" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14711" g_stop="14794" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14906" g_stop="15012" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1062" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1156" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1157" r_stop="1270" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1336" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1409" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1496" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1497" r_stop="1551" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1552" r_stop="1623" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1624" r_stop="1686" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1687" r_stop="1801" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="18480" g_stop="18870" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1802" r_stop="2188" r_length="387" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E624128" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>2198</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8258" e_stop="8456"/>
          <exon e_start="9722" e_stop="9818"/>
          <exon e_start="11619" e_stop="11737"/>
          <exon e_start="11836" e_stop="12003"/>
          <exon e_start="13147" e_stop="13275"/>
          <exon e_start="13752" e_stop="13812"/>
          <exon e_start="14530" e_stop="14633"/>
          <exon e_start="14711" e_stop="14794"/>
          <exon e_start="14906" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTC-AATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGTAAGTTTTTTTATTAATTTTGTTTTCAACTGTTAGCTTGAAAATTAGCGTGTAGTCATGATCTGTTTTTTTTTGTTTTTTTTTAAAAAATTATTCGAGATACTGTTTTGGAAAGTTATTCAGCTACTATTAGTTGAAATTATTGCAGTGAAAAAAATAAGTTTTTTGGTTAATCTAGAGGTACACCAATTTGTTTGGGACTAAGGCGTAGTTGTTTTTGTATGGAGGTTTAATGCTATACTGGATTTGCCAAATACTGGTTACATTTTGTTGGTTTGTGTTGATGTACTCTATAAACTGGGATTATGTGATATGAGTCACGATATGCTACTTTTGAAGTACTGTGTCCACCGACTAAATTTTTCACCTAAATTTTGATGTCTAGTTGGGAATTTTATTGAGGAAATGGATGTAGAGGGTTCATTAAGCCAACTGAACTATGGTTTGTGACTTTGTGTTATTACTGGTGTAGTAGATGGGGTAATTATTAGTTAAATTTTGCTTGTAAATTGTCCTATAAGTTACTCTTTAACAGGAGAAAATGCGGTGCTCTGGCAAAATGAAAGTTGGTGTGATTCCAGAAACTGAAAGGAATTATACTGAAATTTCATAAGCCAAACATAGAAGCAGAATAGAACACATATTACGGATGACCTCATTAGGATTTTTAATCTTCTGTGTGCTGTAGCATGAAATTTTATGAGTAAAACATTATATAGAGATATATACAGTGTCATGGTGTTTAGGCTGTCCAAGACTGTATTTTTCTGAGCATCAACCTTTATATGGAACATGTGGTAATAAATTAACCACAAGATAAAAAGTAATTTACGTTGTACCTTCAGAGTCCAGAATTATGCTTTATGTTTCTCGAGAGACCATGATTTATACAACCTTAGTAAAGTTACCAGGATTGATACAACCTTAAGAATAGTACAATTTTCTGATAATGGTACATACGAAGGAAAAAAGATTACAATACGACTGATTCCTATTAAATTGTGTAAAATATCTTATCTAAAAGCTTAAACTGTAGATTCCTTTTTCAAAGGCCAAGTATTTGTACAAATTGTTGTTAATGGGTAGTATTGAGACAGGAACCCAGAATCTCTGCCTAACTCTAATACCATGTTAAATTATGTGTACCTTCTCATCTAAAAGTTTTAAATGTTAGAGAGAGCAGACTTTATTTACTCAATTATGCTTCCAAAGTTTGTAATAGTTGAATGTTATTGATGTTATTATCTGCAATAAATAAAAAACAGGACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCAGTAAGTTGGCTATTTTATGTTTGGCCCTTGTTGCTTGCATGAAAGTTAATATTCGACTCTTTATAGTAACAAAAGGGGACTATGCTCAATTTATTTAGAAGAAATTTCTTGTTCTATATCTCTCTCTTCCATTGTTTTTGGCTTCTAACTTAGATAGAACCTGGTTTTAAAGTACTTGTGGGTTTGGTTCGAAGTACTATATATTACACACAAGTACTTCGAAGTATGTCGAGAACCAATATGGACAATGAGAACTGCCATGAAAATTGATGAGAACATCAACTTAGTTTGGTAGTAGTATTTGTGGGTTTTTTCCATTATCAATCTTTTGTCCTTTTTCTTTGGCAGGGTGGAGATTTCAACCCCTTAGGAATTTCCTAAAATAAAATTATGGTTGTTATTAGTTTTCACAAGTGCTTTTAGAGCGTACCGTGTTGGTGAAGATTCTTGAGCATGGGTGAACGGTTCTGTTAGTCTTCACCAGACTATCTAGTAATAACTAGAAGAAAATGCTTGATTGAATGAAGTGCTGGAAGAGCTGTCTAAGTTGGTTTGACATGTTTATTACCTACCAGTGTTTTTTATGAGGTGTCAACATTATGCTCTCGAATTCCATATATTCCAAAACTTGTGGTGGAATTCGTATGAGGCTTGAATACACCATCTATTTTGACTTCTTTTTTCCCCTAGCGCTTTGGTTTAATGGAAAAGGTAATACGACATGGAATGTATAGTTGACGCACATCATGAGTTTGGATCCTATTGTAAACCAAGTCTGGTGTTTAAGTTTACTTATAAAAAAAAAGTCTAGCATTTAAGTGGCCCAGTGTTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCGAAAGCAAGGGGTTGGACTTCTAGGTCGAGCTCGTCACACGAGGCTTTCCTAGTGCGGGTTACTTCTCCTATGTGGTTTGTGAGCTATTGCATAGGAGCGGGGGTTTTACCCAGTGCGCACCCAAAAGATAGCGGTTGCGGGTTTCCCTTGTCATAAAAAAAAAGTCTGGTATTTAAGTGAGTAAAGGGTGAAGCCATTATCTACTGAGTTTCAAAACTGGAAGCAACAGATTTCTTGGTTATTGGAAAAAGTAGTTTTGAGATGTCAGTGTATGGTTCCTGCTGCTATTTTTTGGTGCATCTGGAATGAAAGGAATTGTAGATGTTTTGATGGGATTTCAATTCCTAACCATATTCTTAAATACAACTGTTTCGTCTTCTTATCTAGCTGGTTCAACCAGGACCCTGTAACCACTGTTGATGTTTTTTTGAACTATGTTTGCTCTTTAGTTATTTAGTAATTTCTTGTACAGGAGCAGACCCCTTTGCCTTGCATCTTCTTGATGCCTTTTAATGGAATCTCCTTACTTCATTTTTAAAAAAAGGCATGTAGCGTGTCGGCACCAACATGTATTAAAAACTCTATATTTAGTTCCTCCCTGCTGAAAAAGAGAGGAGGAATTTCTGGAACATTTGGATCTTCCTTTTTGAGAAAGATTTCTGCAACATTTAAATCTAATCTTGCTGAGATTAAAATATTTAACTTTCTGTTCCAATCATCCATTTGACTGCATTCTGTCAAATCTTCTAGAAAGCTCTTTATTTTTTTTGTCTATTCATCTATATATGTATCATACTCAAGCACGTTATATCCATCAGTGTAATGCTATATCTTCTGTTTAATAAGTTTGTTGTAAGATATACTTCGCGAATTGTGTTGTCTGATACCATATTCTTTCTTTTGCTGTACCTCTAGTGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGAGTAAGTCTGGTGGTTGCAAATCATGCTTGCAAATGCTAAGTAGCAAATAAACTATTTCTACCTGAAGACTGAAGTTAAATCCTGAACTTGCTTCTCAGGTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAGGTACTATGTGATTTCACAACTTTCTGATTTTTCAGCTGTCCCTTCTGTTGTTTCAACTATCTCGAAGTTTCAGATATATGGAACCCCTGTTTGTCTTCTGCATTCGCCTAATCTCTGTGTCATTTACAGAAACAAAATCTCACAATAGTACATCTTCTTTTTCTTAAATTGTATGCTGTCAAAATAGCATTTGTCACTTTCCATTAAAAAATGGCCTTCTACCTTGGCACCTGGAGCTCTAAGTGACTATCGTACGGGCATTTAGTCACCTCTATGAGATGACTATAATGTGACTTCACCATGAAGCATTTCAAGGATGACCCTTTCAAAATCAGGACACTTCAATTCCTCGATAATATAAAGTTCTCCTAAAAGAATTTTTGCTACGGTAACAAACTCATAAACTTTTTATTTGTGACAAAAATAAATTAGGTGTCACAAATAAATTAGGGTAGTCTTCTCGCGTGTGATACTTTTTTTTCCTTGATAAAAATAAAGTACCACACACCATAGTCAAGCCAAGAGCGGATAAGGTCCCCCCGAGAACCTCATGAATTTTCACCAATCTGTTTTTTCCCCTTCAAATCCTCTCTACAAGAGCCATGTGAAGCTTTGTCACTTGCACAGAACCATCCATATTGATCTGCACCGTGCTTTACTTACTTTACTTTCAAATAACTTTCTTCTCGTATGTGAATTTCTAGAGCCATATTCCCAATTTCCCATCAAAACATGGTTGTATTTGAATTTTCAGATACCCAATCTGCCGAAATGTGCTACCTCCTTTATGTCTTCACAGGAAATATCTCATTAGCCCTATGAGTTGTGCAGGAATTTGTGATGTTTTGTTTGGATGATGAGGAGTTAAGTTACTGGTCATTGGTTTATTTTTAAGTACAGTGACAATTTCAGACCCAAGTTATATTATTCCTTTCAATTTTCCTTTCAGAAATTTCTGTGAAATACTTGGGTACAGAAAGTTAAATAGTTGATATTTCGGAATAATGCAAAACTTAAAGCATAGTGTAGCTGAGAAAATCTTCCTGACTTTAACCTCTTTGATATGGATTCTCTTTTTTGAACAAAAACTCACAACTTTGTTGAAATAGAATCATCCAATGCATTCTCTTCTTTTGTTTGCAGGTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGAGTATGTATGAGAATAACTGTTTGTTCAGCAATTTGACATTCATGAGCTATTATTATCAGTGTGTGGGTTGCATATGTTTTGTATCTTTTGCATATGCTGCTTTGGAAATCTGAAGTGCTATGACACATAGACGTTTCTCATGGATTTGACAAGGATATCAATCTGACTAACTAGCCTATCCAAAAAGACATAAAACAATATTAAATAAAGATGTGACTCCAGATTTAAAATGAGATTTGGTTTAAGTGTTAAGTAATGACTGCTAACACTGATGTTTGGTAAGTCTGCCTATGTCGTTTCTTATTAGTGTCTTGTACAGTTTAATCAAAATTGATAACCACTCAATCTGTTCTTTGAATAATAGAACTGGTGATTGTTATACTTCCCAAAAAAACAATTAACTCTTCCGTGTTATGATGTGCCTTCATGTTTAAAATATGATGTCTGCCAGATTTACCTATGCCTATGCTTTACAGGTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTTGTGAGTAAGATTTTTTAATGCATAGTACTTCATCCAAAAAACGTATCAGTAATTTAATATGCTCACACCTAATTGTTTTTGGCTTCTTACATGCTGGTGGACTTTCTGGTCCTTGCAGTTAATCCTAAAAAATTATTGTCTTATAATTGCTAGCTGTCTTCTATCTGCACATACTGTTGACTCTCTAATAATTACTGTTCTGTAAGTTGCAGTCTTTATGACTAAACGTATCAACTCCAAAAACTTGCTTCACCTTCCTCTTCTCTTGGGGGAGTTCACATATATGATCTTTGAGATTAAGTCAGGGCAAGGTCCATTTTCTTAACATGTCATCAGAGTTGGGCCATACTTATTCTTGGCTTACCCAATGTTGGGTCCCATGTTATATTGTCCATGCATCAAATGTTAAGTTTTGGGCGTGTAAGAGGGTGTTAAGTGTCTTCGAAAGTTCTCATCTTATGAGTTAGCTTTTGGATTGAGTTATGCCCAAGGGCCACTTTCTTAACACCAAATACTTGAGTTAGGTCCAATGTCCATTTTCTTAACACCAAATAGCAAACGACATAGTGGCTCTATTCAATTTATGTTGAGTAAGGATGCAACTATCAGATGATATACAGTTCTAGTTTTGAAAATCAGCCCTTGTCACCCCTCCTCATTCTGTTCTCCAAGTTGGGCGCAGGGGTTTCTGCTTCTTACAGGATTTTGATTTTACAGATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAGGTCCATTTATTATTAAAGAAAGATATGTGATACTATTTTATTTCTATTGCACTGATATATCTTAATAATGCTAGTAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAGGTAGTTTGCTTGGTCCCCTATTTTTTCTGGAGGTTATTTGTTGGCCCTTGTTCTCCTTTCTGCAGCCACCACTGACGGAAAGAATTATCTTCTGCTCTTCTTGTTCAATAGGGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGT</genome_strand>
        <mrna_strand>CTCGAATTCAAAGTTTTGTTGATTCAATTTTTA--CG-CATTTTTTTATTTA--T--ATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGGGATTCCCAATGACGGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGACAGTGTTGTTTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA..................................................................................................GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGTTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCTACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGATTGTGCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCCAGTTATGCTTGACGTCGGGACCAACAATCAGAAGCTTCTAGAAGATCCTCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGACTGCGACAACCTAGGTTGGAAGGAGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG.............................................................................TTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACACTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG...............................................................................................................GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGACTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGGCTCGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGATGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAAAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTCGTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGACAAGGGCTCTTCAAATATTTCATTTTTTTGTTGTTAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTT-GATT--TGACTAGGAGATGTATTTGTTATCTCAGAATAAAAGCTGATACTTTCTCTCAGCACCACCACCTATTGAACTGTATTCA-TTTTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256572" ref_strand="+" ref_description="SGN-E256572 [cLEG-38-M18]">
      <seq>aaagagtgctcccagttatgcttgatgtcgggacaaacaatcagaagcttctagaagatcctctttatcttggactgcgacaacctaggttggaaggggaagaatatttgtcaatagttgatgaatttgtggaagctgttcatgctcgttggccaaaggctgttgtgcagtttgaggattttcaagcaaagtgggcttttgagacgctggatcgctatcggaaaaagttttgcatgttcaatgatgatatacagggaacagctggtgttgctcttgctgggctattaggaactgttagggcacagggccggccactgactgattttgccaaccaaaagatagtggtagttggagcaggaagtgcggggcttggtgttcttaagatggcattacaagccgtttcaagaatggctggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcaggacttgctgaagtggtcaaaaaggtgaagcctcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="13448" stop="16160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13752" g_stop="13812" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="66" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13813" i_stop="14529" i_length="717">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14530" g_stop="14633" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="170" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14711" g_stop="14794" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="254" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14906" g_stop="15012" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="361" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="455" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="569" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15838" g_stop="15860" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="592" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E256572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13752" e_stop="13812"/>
          <exon e_start="14530" e_stop="14633"/>
          <exon e_start="14711" e_stop="14794"/>
          <exon e_start="14906" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTTGTGAGTAAGATTTTTTAATGCATAGTACTTCATCCAAAAAACGTATCAGTAATTTAATATGCTCACACCTAATTGTTTTTGGCTTCTTACATGCTGGTGGACTTTCTGGTCCTTGCAGTTAATCCTAAAAAATTATTGTCTTATAATTGCTAGCTGTCTTCTATCTGCACATACTGTTGACTCTCTAATAATTACTGTTCTGTAAGTTGCAGTCTTTATGACTAAACGTATCAACTCCAAAAACTTGCTTCACCTTCCTCTTCTCTTGGGGGAGTTCACATATATGATCTTTGAGATTAAGTCAGGGCAAGGTCCATTTTCTTAACATGTCATCAGAGTTGGGCCATACTTATTCTTGGCTTACCCAATGTTGGGTCCCATGTTATATTGTCCATGCATCAAATGTTAAGTTTTGGGCGTGTAAGAGGGTGTTAAGTGTCTTCGAAAGTTCTCATCTTATGAGTTAGCTTTTGGATTGAGTTATGCCCAAGGGCCACTTTCTTAACACCAAATACTTGAGTTAGGTCCAATGTCCATTTTCTTAACACCAAATAGCAAACGACATAGTGGCTCTATTCAATTTATGTTGAGTAAGGATGCAACTATCAGATGATATACAGTTCTAGTTTTGAAAATCAGCCCTTGTCACCCCTCCTCATTCTGTTCTCCAAGTTGGGCGCAGGGGTTTCTGCTTCTTACAGGATTTTGATTTTACAGATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAGGTCCATTTATTATTAAAGAAAGATATGTGATACTATTTTATTTCTATTGCACTGATATATCTTAATAATGCTAGTAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAGGTAGTTTGCTTGGTCCCCTATTTTTTCTGGAGGTTATTTGTTGGCCCTTGTTCTCCTTTCTGCAGCCACCACTGACGGAAAGAATTATCTTCTGCTCTTCTTGTTCAATAGGGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGT</genome_strand>
        <mrna_strand>GTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG.............................................................................TTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG...............................................................................................................GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704156" ref_strand="+" ref_description="SGN-E704156 [FA23CA06]">
      <seq>gttatgcttgatgtcgggacaaacaatcagaagcttctagaagatcctctttatcttggactgcgacaacctaggttggaaggggaagaatatttgtcaatagttgatgaatttgtggaagctgttcatgctcgttggccaaaggctgttgtgcagtttgaggattttcaagcaaagtgggcttttgagacgctggatcgctatcggaaaaagttttgcatgttcaatgatgatatacagggaacagctggtgttgctcttgctgggctattaggaactgttagggcacagggccggccactgactgattttgccaaccaaaagatagtggtagttggagcaggaagtgcggggcttggtgttcttaagatggcattacaagccgtttcaagaatggctggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcaggacttgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaatttttgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcatagggctgggagctcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="13461" stop="17461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13761" g_stop="13812" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13813" i_stop="14529" i_length="717">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14530" g_stop="14633" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="156" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14711" g_stop="14794" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="240" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14906" g_stop="15012" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="347" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="441" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="555" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="621" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="694" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="781" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="836" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="17140" g_stop="17161" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="858" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E704156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13761" e_stop="13812"/>
          <exon e_start="14530" e_stop="14633"/>
          <exon e_start="14711" e_stop="14794"/>
          <exon e_start="14906" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTTGTGAGTAAGATTTTTTAATGCATAGTACTTCATCCAAAAAACGTATCAGTAATTTAATATGCTCACACCTAATTGTTTTTGGCTTCTTACATGCTGGTGGACTTTCTGGTCCTTGCAGTTAATCCTAAAAAATTATTGTCTTATAATTGCTAGCTGTCTTCTATCTGCACATACTGTTGACTCTCTAATAATTACTGTTCTGTAAGTTGCAGTCTTTATGACTAAACGTATCAACTCCAAAAACTTGCTTCACCTTCCTCTTCTCTTGGGGGAGTTCACATATATGATCTTTGAGATTAAGTCAGGGCAAGGTCCATTTTCTTAACATGTCATCAGAGTTGGGCCATACTTATTCTTGGCTTACCCAATGTTGGGTCCCATGTTATATTGTCCATGCATCAAATGTTAAGTTTTGGGCGTGTAAGAGGGTGTTAAGTGTCTTCGAAAGTTCTCATCTTATGAGTTAGCTTTTGGATTGAGTTATGCCCAAGGGCCACTTTCTTAACACCAAATACTTGAGTTAGGTCCAATGTCCATTTTCTTAACACCAAATAGCAAACGACATAGTGGCTCTATTCAATTTATGTTGAGTAAGGATGCAACTATCAGATGATATACAGTTCTAGTTTTGAAAATCAGCCCTTGTCACCCCTCCTCATTCTGTTCTCCAAGTTGGGCGCAGGGGTTTCTGCTTCTTACAGGATTTTGATTTTACAGATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAGGTCCATTTATTATTAAAGAAAGATATGTGATACTATTTTATTTCTATTGCACTGATATATCTTAATAATGCTAGTAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAGGTAGTTTGCTTGGTCCCCTATTTTTTCTGGAGGTTATTTGTTGGCCCTTGTTCTCCTTTCTGCAGCCACCACTGACGGAAAGAATTATCTTCTGCTCTTCTTGTTCAATAGGGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTT</genome_strand>
        <mrna_strand>GTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG.............................................................................TTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG...............................................................................................................GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATAGGGCTGGGAGCTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729734" ref_strand="+" ref_description="SGN-E729734 [LA21DG04]">
      <seq>gaatatttgtcgatagttgatgaatttgtggaagctgttcatgctcgtatggccaaaggctgttgtgcagtgttgaggattttcaagcaaagtgggcttttgagacgctggatcgctatcggaaaaagttttgcatgttcaatgatgatatacagggaacagctggtgttgctcttgctgggctattacgaactgttagggcacagggccggccactgactgattttgccaaccaaaagatagtggtagttggagcaggaagtgcggggcttggtgttcttaagatggcattacaagccgattcaagaatggctggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggatatgaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcaggacttgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgacggccatgaaagagtcacattctgttagacctgcaatttttgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcgagcttgctggagaagatattgcttttgctagtgggagtccctttgcaaatgtagatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcatacggctgggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="14265" stop="17507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14565" g_stop="14633" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14634" i_stop="14707" i_length="74">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.798" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14708" g_stop="14794" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="155" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14906" g_stop="15012" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="356" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="470" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="536" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="609" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="696" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="751" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="17140" g_stop="17207" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="819" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E729734" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14565" e_stop="14633"/>
          <exon e_start="14708" e_stop="14794"/>
          <exon e_start="14906" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGT-TGGCCAAAGGCTGTTGTGCAGGTCCATTTATTATTAAAGAAAGATATGTGATACTATTTTATTTCTATTGCACTGATATATCTTAATAATGCTAGTAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAGGTAGTTTGCTTGGTCCCCTATTTTTTCTGGAGGTTATTTGTTGGCCCTTGTTCTCCTTTCTGCAGCCACCACTGACGGAAAGAATTATCTTCTGCTCTTCTTGTTCAATAGGGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTG</genome_strand>
        <mrna_strand>GAATATTTGTCGATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTATGGCCAAAGGCTGTTGTGCAG..........................................................................T-G-TTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG...............................................................................................................GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTACGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGATTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATATGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGACGGCCATGAAAGAGTCACATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCGAGCTTGCTGGAGAAGATATTGCTTTTGCTAGTGGGAGTCCCTTTGCAAATGTAGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATACGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571215" ref_strand="+" ref_description="SGN-E571215 [11605]">
      <seq>gcagtttgaggattttcaagcaaagtgggctcttgagacactggatcgctatcggaaaaagttttgcatgttcaatgatgatatacagggaacagctggtgttgctcttgctgggctattaggaactgttagggcacagggccggccactgactgattttgccaaccaaaagatagtggtagttggagcaggaagtgcggggcttggtgttcttaagatggcattacaagccgcccctcaagaatttctggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcagggctcgctgaagtggtcaacaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaattttcgccatgtccaaatcctacaaacaatgctgaaatgctgtcctggttgatgctttcaagcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="14407" stop="17091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14630" g_stop="14633" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14711" g_stop="14794" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="88" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14906" g_stop="15012" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="195" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="291" r_length="96" r_score="0.915"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="405" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="472" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="546" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16756" g_stop="16791" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="584" r_length="38" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E571215" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14630" e_stop="14633"/>
          <exon e_start="14711" e_stop="14794"/>
          <exon e_start="14906" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTCCATTTATTATTAAAGAAAGATATGTGATACTATTTTATTTCTATTGCACTGATATATCTTAATAATGCTAGTAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAGGTAGTTTGCTTGGTCCCCTATTTTTTCTGGAGGTTATTTGTTGGCCCTTGTTCTCCTTTCTGCAGCCACCACTGACGGAAAGAATTATCTTCTGCTCTTCTTGTTCAATAGGGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCG--TTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAA-AAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGT-CAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTG-AATGCTGTCCT-GTTGATGCTTTCAAGCTTGCTG</genome_strand>
        <mrna_strand>GCAG.............................................................................TTTGAGGATTTTCAAGCAAAGTGGGCTCTTGAGACACTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG...............................................................................................................GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGCCCCTCAAGAATTTCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGGCTCGCTGAAGTG.......................................................................................................................................................................................GTCAACAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCCAAATCCTACAAACAATG...................................................................................CTGAAATGCTGTCCTGGTTGATGCTTTCAAGCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698972" ref_strand="+" ref_description="SGN-E698972 [FA08AF12]">
      <seq>ccccttggagcacgaagtgcggggcttggtgttcttaagatggcattacaagccgtttcaagaatggctggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcaggacttgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaatttttgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcatagggctgggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgcctcgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgacgatattcgggatattacagcagaggtgggagctgctgttttacgggctgctgtggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="14833" stop="18602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14996" g_stop="15012" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.706"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15135" g_stop="15228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="111" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="225" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="291" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="364" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="451" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="506" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="578" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="641" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18246" g_stop="18302" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="698" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E698972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14996" e_stop="15012"/>
          <exon e_start="15135" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTGGAGCAGGAAGGTAATGGCAAAATTAATTTTGACAATCTATCCTAGGTTACTAATAAATTCTTGTCTTATTTAGATGCCTGTTTGAGGTGACTTAATTGTGCGTTCTCTTCTTTATTAATTTATGGATTTCAGTGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGA</genome_strand>
        <mrna_strand>CCCCTTGGAGCACGAAG..........................................................................................................................TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463843" ref_strand="+" ref_description="SGN-E463843 [cPRO-16-K17]">
      <seq>gttcttaagatggcattacaagccgtttcaagaatgactggaccatcagcagatccccacttttttcttctggataaaaatggtcttatcacaaaggataggaaagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcagggctcgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="14848" stop="17511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15148" g_stop="15228" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15541" g_stop="15654" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="261" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="334" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="421" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="476" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="548" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17369" g_stop="17378" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="558" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E463843" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15148" e_stop="15228"/>
          <exon e_start="15541" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAATGTGAGGTTTTGTATATATACAGATTGTTTATATTCCATGTTGATTCAGAAAATGTAAATGTGTTCCCTCTTTTTGCATGTGTCTTTTATCAAATATGTTTAACCATGCTAGCATTTTAGATTGGGAGACAAATCAGCATCAAATATAACTGTATTATAGGTGAAAACAATGTTTCATTCACTAATCACATGAATGGGCCTCTGGGCTTTGTGACAAGTACCATATGTTTTTCTGTCCATGACATCAGTTGGTGTAAAAGATTTGCTTCCCTCCAACATGATCGGTAATGGTCATTGGTGATTGTTGATGCAGGGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCT</genome_strand>
        <mrna_strand>GTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGACTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT........................................................................................................................................................................................................................................................................................................................GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGGCTCGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590931" ref_strand="+" ref_description="SGN-E590931 [44537]">
      <seq>aagatattgatccagcagcattaccatttgctaaagcccatcacgagattgaggggctaggactacaggagggagcagggctcgctgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="15263" stop="18642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15563" g_stop="15654" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183">
            <donor d_prob="0.419" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15838" g_stop="15903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="158" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="231" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="318" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="373" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="445" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="508" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18246" g_stop="18342" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="605" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E590931" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15563" e_stop="15654"/>
          <exon e_start="15838" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTGGTAATGTTAATAGAATCTGTGGGATACAAAACTAAGTTGCTCTTAGTAGAAGGATTTCCGTGCTTTGTTAAAATTTGTTGACCTTCTTGATTATTGGGCTGTAGGCGACTAATAATTTCTATCTTCGTCTTAGTTCTTTTTATGCTTTCCAAGACAATAAGGCTGGCGTTAAATGTTTGTCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAG</genome_strand>
        <mrna_strand>AAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGGCTCGCTGAAGTG.......................................................................................................................................................................................GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453199" ref_strand="+" ref_description="SGN-E453199 [cSTS-19-O11]">
      <seq>tcaggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcatatttcatgaggaggtgctgagggccatgaaagagtcagattctgttagacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="15534" stop="18857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15834" g_stop="15903" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16600" g_stop="16672" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="143" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="285" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="420" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="535" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18480" g_stop="18557" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="613" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E453199" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15834" e_stop="15903"/>
          <exon e_start="16600" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAGGTGGGTCATGTACTTTGTTTTTTTATTCTTCTTTAGCATTTATTTACGACGCTCAGAGATAAGAACCGTGTCATTGGATCAGCTATTTTCAATTGTGACATCTAGCTTATCGTGAAACTTTATGGAAATGATTGGATCTTTAATTCTCTAGCTGGCCAAAGTTACTTAGCACATTTAATCATTTACTCTATATTTAACATGTAGGACAGTATGTTATTTGAATTTTTTTTGTCATATATCCACATCCGACTCCTTTGCTCTACCATAAATTACATCATGAAGTTATAGCATATTTATTCCTTATTTTCTGATCAATTCGCTTGCTTCATTACATACTTGTGAAGCTTATGCCATTGACAATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCAGGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCAACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACT</genome_strand>
        <mrna_strand>TCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420578" ref_strand="+" ref_description="SGN-E420578 [STM-31-O12]">
      <seq>gaaagagtcagattctgttagacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatgctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgngttgagatcacaggtccacgagaagtggagtatgatctggtgctctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16314" stop="18932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16614" g_stop="16672" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16756" g_stop="16842" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="146" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="201" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="273" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="336" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="451" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18480" g_stop="18654" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="626" r_length="175" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E420578" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16614" e_stop="16672"/>
          <exon e_start="16756" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATT</genome_strand>
        <mrna_strand>GAAAGAGTCAGATTCTGTTAGACCTGCAATTTTCGCCATGTCAAATCCTACAAACAATG...................................................................................CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGNGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTGCTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689259" ref_strand="+" ref_description="SGN-E689259 [t3_tus_80_M09]">
      <seq>ctgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcatagggctgggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgcctcgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgacgatattcgggatattacagcagaggtgggagctgctgttttacgggctgctgtggctgaagacctggcagaaggtcacggtgacgttggagtgagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagagaaaatatgtggtatcctgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatggtctggtgctccaaattgcctgtaaaggtcaaaaagtttcacaaacttgactgtattaggtgtacaattacaaggacaaatgttgctgaaccacgaaagagtctagggctcttcaaatatttcatttttttgttgtaagccattcttgtttatctcatgaagcatatgtaacctttaaattgaggagtaggagatgtatttgttatccctgaataaaagctgatactttctctcagcagcaccgcctattgaactgtattcatttttggtgtttttttcttccttaaatgaaatagcatttgaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16463" stop="19205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16763" g_stop="16842" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="135" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="207" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="270" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="385" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18480" g_stop="18904" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="810" r_length="425" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="811" polyA_stop="822"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E689259" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16763" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACA</genome_strand>
        <mrna_strand>CTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTGGTGTTTTTTTCTTCCTTAAATGAAATAGCATTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326329" ref_strand="+" ref_description="SGN-E326329 [cTOC-14-B10]">
      <seq>tgtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcatagggctgggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgcctcgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgacgatattcgggatattacagcagaggtgggagctgctgttttacgggctgctgtggctgaagacctggcagaaggtcacggtgacgttggagtgagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagagaaaatatgtggtatcctgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatggtctggtgctccaaattgcctgtaaaggtcaaaaagtttcacaaacttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16464" stop="18949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16764" g_stop="16842" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="134" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="206" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="269" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="384" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18480" g_stop="18649" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="554" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E326329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16764" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACT</genome_strand>
        <mrna_strand>TGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693737" ref_strand="+" ref_description="SGN-E693737 [LH_Ea02B15](-)">
      <seq>gtcctgttgatgctttcaagcttgctggagaagatattgtttttgctagtgggagtccctttgcaaatgttgatttagggaatggtaagataggccatgtaaatcaagcgaataacatgtatcttttccctggcattgggctgggagcttttctttttggcgcttgaaacataagtgatacaatgttagaagctgctgctgagtgcctcgctttttacatgtccgatgacgaaatcaatagaggaattttgtatccatccattgacgatattcgggatattacagcagaggtgggagctgctgttttacgggctgctgtggctgaagacctggcagaaggtcacggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagcccattgaacacgtgagagaaaatatgtggtatcctgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgctttggtgctccaaattgcctgtaaaagtcaaaaaattttgcaaacttgactgtattaggtgtacaattacaaggacaaatgctggtgaaccacgaaagagacaagggcttttcaaatatttcattttttttgttgtaagccatttttgtttatttcatgaagcatatgtaacctttaaattgaggagtaggagatgtatttgttatccctgaataaaagctgatactttttttcagcacccccacctattgaaatggattcatgttttgtggtgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16465" stop="20297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16765" g_stop="16842" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="133" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="205" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="268" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="383" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.568" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18480" g_stop="18868" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="773" r_length="390" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18869" i_stop="19967" i_length="1099">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19968" g_stop="19996" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="802" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E693737" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16765" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18868"/>
          <exon e_start="19968" e_stop="19996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCA-TTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTGGCTCGAAGGAAATCGGCACAGAACGGAAAATTCACTTTCTCATGTTTGATTGGTCAAAATTTTTGAAAAACTTTTTCTATGTTTCGAGTACAACTCCCTACCGGAGGTGGAGGTGTCATTTCAACATTCAACACACCTCAAGTTCTCTCCTTTTCATTGCATCATACTCCATCTCCCATGATATTTATCTTAAAATTATATTCAAATACTTCTGATATAATATTCTTTTTTTGCTAGATACCGAACAAAAAATATAAAACATTGCTAATAAGACTTATGTGGTCCTATGAACTTATGGCTATCATTTCTCTCATTTAACAACCACACTTGTGTTTCTTGACAATTATTTTCTTAATTATTCAATAATAGTGACGCCTTCTTTTTCTTTTTTCTTTTAATTATATGACAAAAACTTTTCTATCAACATATAAATATATTCAACTCTCAAGTCTCACCTATACACTAGTGTATAATTTTTCTCTCATTCTTTTACACATTAAAACACACAAAAACTTCATACCATGGCTGAAGCTTCCAACTTCCTAGAAACTCAACGGTAAGTACTCAACTTCACTACTTTTTTAAAGCAGAATCTACCACACCAAATTTGGATTGATTTGTTACATGGTCACTCAACTAATAATTATTATCTTATTACCAGCTTTTTCTCTTTTGACTTTTTAAGATAATATAAGTATCGGAGAATGAATTAATTTCTTATGATTTGGATTAATTTGTTGTTATCATCAGGATTGCAGTTGTGAGTGGAGGCAACAAAGGGATAGGATTAGAAATATGTAGACAACTAGCATCAAAGGGAATATTGGTGATTTTAACAGCAAGAGATGAGAAAAAAGGGAATGAAGCTGTTATTAATATGGATGAACACTCTAATTATAATATCATTTTTCATCAACTTGATGTGACTAACATTTCTAGTATTGTAACACTCAGAGATTTCATCAAGAATAGATTTGGCAAACTTGATATCTTGGTATTTCCTCTTCCACTCCTTTTCAATTTTAATTCTTTCTATAGAATTGAATCCAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATTTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTTTTCCCTGG...........................................................................CATTGGGCTGGGAGCTTTTCTTTTTGGCGCTTGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTCGCTTTTTACATGTCCGATGACGAAATCAATAGAGGAATTTTGTATCCATCCATTGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGCCCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGCTTTGGTGCTCCAAATTGCCTGTAAAAGTCAAAAAATTTTGCAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGCTGGTGAACCACGAAAGAGACAAGGGCTTTTCAAATATTTCATTTTTTTTGTTGTAAGCCATTTTTGTTTATTTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTTTTTCAGCACCCCCACCTATTGAAATGGATTCATGTTTTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463140" ref_strand="-" ref_description="SGN-E463140 [cPRO-13-P23]">
      <seq>aagatattgttttgctagtgggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtaaatcaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgatctggtgctctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtattaggtgtacaattacaaggacaaatgttgctccacgaaagagacaagggctcttcaaatatttcatttttttgttgttagccattcttgtttatctcatgaagcatatgtaacctttgatttgactaggagatgtatttgttatctcagaataaaagctgatactttctctcagcagctgacctattgaactgtattcatttttgtggtttttatgaaatgaaatagcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16495" stop="19174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16795" g_stop="16842" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="102" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="174" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="237" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="352" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18480" g_stop="18899" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="759" r_length="407" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E463140" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16795" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTG</genome_strand>
        <mrna_strand>AAGATATTG-TTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTGCTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCT---CCACGAAAGAGACAAGGGCTCTTCAAATATTTCATTTTTTTGTTGTTAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTT-GATT--TGACTAGGAGATGTATTTGTTATCTCAGAATAAAAGCTGATACTTTCTCTCAGCAGC-TGACCTATTGAACTGTATTCA-TTTTTGTGG---TTT-TT-ATGAAATGAAATAGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601201" ref_strand="-" ref_description="SGN-E601201 [54233]">
      <seq>atattgttttttgctatggggagtccctttgcaaatgttgatctagggaatggtaagataggccatgtacatcaaagcgaataacatgtatctcttccctggcattgggctaggagctcttctttctggcgctcgaaacataagtgatacaatgttagaagctgctgctgagtgccttgcttcttacatgtccgatgacgaaatcaatagaggaatcttgtatccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgatctggtgctctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtattaggtgtacaattacaaggacaaatgttgctccacgaaagagacaagggctcttcaaatatttcatttttttgttgttagccattcttgtttatctcatgaagcatatgtaacctttgatttgactaggagatgtatttgttatctcagaataaaagctgatactttctctcagcagctgacctattgaactgtattcatttttgtggtttttatgaaatgaaatagcatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="16498" stop="19174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16798" g_stop="16842" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167">
            <donor d_prob="0.968" d_score="0.91"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17010" g_stop="17064" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="102" r_length="56" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75">
            <donor d_prob="0.910" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17140" g_stop="17211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="174" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17431" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="237" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="352" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18480" g_stop="18901" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="761" r_length="409" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E601201" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601201" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16798" e_stop="16842"/>
          <exon e_start="17010" e_stop="17064"/>
          <exon e_start="17140" e_stop="17211"/>
          <exon e_start="17369" e_stop="17431"/>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTG-TTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAGGTAGTTTCTGGTTCCTTGAATGCATTTTTTCTCTGTATCCTTTATGCACTTGTTGTAGTCGATGAGCAACTCCTCTTCATTTGTTCATCTCCCCTTCCCAGTTTAAGCCTCTTTTGTGCTTATTGATGACGTATTACCTCATGAATCCTATTCTAATATGTTCTCAGGGAATGGTAAGATAGGCCATGTAAATC-AAGCGAATAACATGTATCTCTTCCCTGGGTAGGTGCTGATTGTAAACCTATGTTAACTGTTTGAATGTGTTGCACTCATCTAAGATTATTGTTGACAATTCAGCATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTGGTATGATCTGACAATCCTGTCTCCTTGTACTTGATTTGACCATCAGTGGTGTGAGCTTTTCAGTTTGTATTGTGTGTTTAGTTTAAAGCATGTGGTGCAACAGAAGCTTTTCTTATCTATACATTTACTGATTTGTATATCTATTTTGATCGTGCAGCCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGAGTAAGTTCTTGGTTTTGGAGAAAGTATTCTTTGCTCATAGAGTTTTATTTGGAGATGTGAAATCTTAAGCACTAAAATTAGCTCCACCCTGTCCCTGCAATGACTAGATATGACTTGACTGATTGTTGCAACTTACAAATTTGATATCATTTTTTCATTCTGTTAGTTGAACATATTAGCAACTGGTTTTGGCCTTATAGGATTTCTAGGTCACATGCTTTTTGCTGTCCCCCTTGTTACTACACCATTTAACTGTAATATGCATATTTGAGGGAGTCAAATTAACAATGTACAAAATTTTGATGACAATGATGCTTCAATTTCAAGGCGCAGCTTTATAAAGCACAAACGTCTAGGTTTATCTCTCCTGATTTTGATTCTCTCTGTTACATGACAAGGAATGCACACTTACTTTGCTGCTATAATGCAACATTAACAGTAAAGTGACCACTCTGATGAAATGCTGCTACACCCGAATCTTGTTAGTTCACATGGGCAACACTTGATCACTCAGCTCATCCTTAGTTGCTCTTTTATACATTTGTTTATCTTTTTGTACACATGCATTTAGAGATCTAATCTTTGAGGCTATGAATACGTGCTACTAGTTAACCATATAGGTTGTGGTACTATTGATGCTGAATCATTTTGTTTTTCTTTTCCCACGCTTATTAATTTTCAGACTTAGTGAATAACCTTTCTGAGGGCATTTTGGATGTAATTTGCACTTTCAAAATGCATTCACTTAGATGTGGCAAAGGAAAAATTGCTTCCTACAGGTAATCGTATCTAATATCTCTTTTTGTGTGTGCAGTATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAA</genome_strand>
        <mrna_strand>ATATTGTTTTTTGCTATGGGGAGTCCCTTTGCAAATGTTGATCTAG.......................................................................................................................................................................GGAATGGTAAGATAGGCCATGTACATCAAAGCGAATAACATGTATCTCTTCCCTGG...........................................................................CATTGGGCTAGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG.............................................................................................................................................................CCTTGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTGCTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCT---CCACGAAAGAGACAAGGGCTCTTCAAATATTTCATTTTTTTGTTGTTAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTT-GATT--TGACTAGGAGATGTATTTGTTATCTCAGAATAAAAGCTGATACTTTCTCTCAGCAGC-TGACCTATTGAACTGTATTCA-TTTTTGTGG---TTT-TT-ATGAAATGAAATAGCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420579" ref_strand="-" ref_description="SGN-E420579 [STM-31-O12]">
      <seq>ccatccattgatgatattcgggatattacagcagaggtgggagctgcagttttacgggctgctgtggctgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgatctggtgctctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtattaggtgtacaattacaaggacaaatgttgctccacgaaagagacaagggctcttcaaatatttcatttttttgttgttagccattcttgtttatctcatgaagcatatgtaacctttgatttgactaggagatgtatttgttatctcagaataaaagctgatactttctctcagcagctgacctattgaactgtattcatttttgtggtttttatgaaatgaaatagcattgaaacaaaaaaagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="17939" stop="19174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18246" g_stop="18360" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="129" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18480" g_stop="18915" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="551" r_length="422" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E420579" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420579" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18246" e_stop="18360"/>
          <exon e_start="18480" e_stop="18915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTG</genome_strand>
        <mrna_strand>TATTCGGGATATTACAGCAGAGGTGGGAGCTGCAGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTGCTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCT---CCACGAAAGAGACAAGGGCTCTTCAAATATTTCATTTTTTTGTTGTTAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTT-GATT--TGACTAGGAGATGTATTTGTTATCTCAGAATAAAAGCTGATACTTTCTCTCAGCAGC-TGACCTATTGAACTGTATTCA-TTTTTGTGG---TTT-TT-ATGAAATGAAATAGCA-TTGAAACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462656" ref_strand="+" ref_description="SGN-E462656 [cPRO-12-G12]">
      <seq>tgaagacctggcagaaggtcatggtgatgttggggtaagagagttgcagcatatgtcaaaggaagagaccattgaacacgtgagacaaaatatgtggtatcccgtctatggccctcttgttcacgaatagtgaagcacttcctgggttgagatcacaggtccacgagaagtggagtatgatctggtgctctaaattgcctgtaaaggtaaaaaaaaatcgcgaacctgactgtattaggtgtacaattacaaggacaaatgttgctccacgaaagagacaagggctcttcaaatatttcatttttttgttgttagccattcttgtttatctcatgaagcatatgtaacctttgatttgactaggagatgtatttgttatctcagaataaaagctgatactttctctcagcagctgacctattgaactgtattcatttttgtggtttttatgaaatgaaatagcatttgaaacaatttgatttgggcttgaaggtgattggtacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="18000" stop="23266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18300" g_stop="18360" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.568" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18480" g_stop="18945" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="514" r_length="453" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E462656" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18300" e_stop="18360"/>
          <exon e_start="18480" e_stop="18945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAGGTACGAAAATGTTACTAGAATCTACTAAACGAAATGAAACAAGAATCATAACGTTATATACAGTTAAGAAAAATGTGTTTCCGCCTTTTTATTTCAAGAGCTTCATTCGATGGATGCAGGAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTGGCTCGAAGGAAATCGGCACAGAACGGAAAA</genome_strand>
        <mrna_strand>TGAAGACCTGGCAGAAGGTCATGGTGATGTTGGGGTAAGAGAGTTGCAGCATATGTCAAAG.......................................................................................................................GAAGAGACCATTGAACACGTGAGACAAAATATGTGGTATCCCGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGATCTGGTGCTCTAAATTGCCTGTAAAGGTAAAAAAAAATCGCGAACCTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCT---CCACGAAAGAGACAAGGGCTCTTCAAATATTTCATTTTTTTGTTGTTAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTT-GATT--TGACTAGGAGATGTATTTGTTATCTCAGAATAAAAGCTGATACTTTCTCTCAGCAGC-TGACCTATTGAACTGTATTCA-TTTTTGTGG---TTT-TT-ATGAAATGAAATAGCATTTGAAACAATTTGATTTGGGCTTGAAGGTGATTGGTACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308846" ref_strand="+" ref_description="SGN-E308846 [cLEY-23-C13]">
      <seq>aacagcaagagatgagaaaaaagggaatgaagctgttattaatatggatgaacactctaattataatatcatttttcatcaacttgatgtgactaacatttctagtattgtaacactcagagatttcatcaagaatagatttggcaaacttgatatcttggtgaataatgcggcaattcttggagtgcttttagataaagatttcattataaacccacaacaaaatttattcattgagaagatgaaagtagcaactcaaactattgatataggtgaagaatgcataaaaacaaattactatggtgcaaaatggatgatacaagaattattacctctacttcaattatccgattcgccacgtattgtcaatgtctcctcctctactggaaagctccaacatgtacgcaatgaatgggctataggagtcttgaatgattgtgacaatctaacagaagacaaagtggatgaggttttgaatgtttttctcaaagatttcaaagaggatttgttagaaagcaaaaattggcctctaatagtatctgcttatacactatcaaaagcagcattaaatggttacacaagaatattggctaagaaatatccaaattttctcataaattgtgtttgtccaggttatgtaaaaactgatttatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="19450" stop="21717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19750" g_stop="19909" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19910" i_stop="20586" i_length="677">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20587" g_stop="20646" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="220" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20647" i_stop="20901" i_length="255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20902" g_stop="21078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="397" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21079" i_stop="21157" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21158" g_stop="21417" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="657" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E308846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19750" e_stop="19909"/>
          <exon e_start="20587" e_stop="20646"/>
          <exon e_start="20902" e_stop="21078"/>
          <exon e_start="21158" e_stop="21417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAAGAGATGAGAAAAAAGGGAATGAAGCTGTTATTAATATGGATGAACACTCTAATTATAATATCATTTTTCATCAACTTGATGTGACTAACATTTCTAGTATTGTAACACTCAGAGATTTCATCAAGAATAGATTTGGCAAACTTGATATCTTGGTATTTCCTCTTCCACTCCTTTTCAATTTTAATTCTTTCTATAGAATTGAATCCAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTGTCGCTAATCCTATTTAATAACGAATTCACGATTGAAAAATTATATAACTATGATGTGCTATGAAGAGACAGATAAAAAAAAGTGTTTTCTACCGGCTATTTAGAGATGGATTAGTGATTCATTTTGTATTAAAGGAAATTTTTCGTTTGAAAAATGTTTTCTAGAAAAATAAGTGGATATTTATTTTTATTTTCTCGTCTTTGGTTGATTAGCAAACAATATTTCCTAAAATTATTTGTAAATGATATTTTAAACAAATACTATATATGGTGGGAGTGAGGTGTAAAACCATTTGTGAAATTTGTTTTCCTTACTTTCATTAGAAAAATTAATTTTCTTTTTCTTTAAAGAGTTCTTTTTGGCATAAAAAATATTTTTAAAATTATTTGACCACTCGAATATGATAAAACCCGAAAAAGGTTTCTTTAATCAAGCTTTATGCATTAATCATAATTGATCTCAATTTTCTTTATAACTTTGTGTTTGCTTAATAGATTCATGAATTTGCTTAACCGTACTACGTGATGCAAATATAACAAATCATTATTAATTTGTAAATAACATATAATATAAACAGGTGAATAATGCGGCAATTCTTGGAGTGCTTTTAGATAAAGATTTCATTATAAACCCACAAGTAAGTCACTATATATCACATGGATTTCTCATTTTTTTTTATTTATTTTTTCGCCCTACGAGCTCCCAATTTTTTACTCCCTTTGATATAACTCAAACTCAGCACCCTCTTGTCATCGCGTCCATTCTTTCGTTCGTTTATATTATCAATTTTTCTAGCTTTCACTTTCTTTAAAAAAAAAAATCAATTTTATGGTTGTGTAAATTTTTTTGAGTACATTTGAAATGAAATAACGTTGTGATGGTCATGTTGTAGCAAAATTTATTCATTGAGAAGATGAAAGTAGCAACTCAAACTATTGATATAGGTGAAGAATGCATAAAAACAAATTACTATGGTGCAAAATGGATGATACAAGAATTATTACCTCTACTTCAATTATCCGATTCGCCACGTATTGTCAATGTCTCCTCCTCTACTGGAAAGCTCCAAGTACGTACATATTTTATCCAATCGTTATATTATGAACATCTATTTTTAATACAGTAACTGACACGATGTTTTGTTTCAGCATGTACGCAATGAATGGGCTATAGGAGTCTTGAATGATTGTGACAATCTAACAGAAGACAAAGTGGATGAGGTTTTGAATGTTTTTCTCAAAGATTTCAAAGAGGATTTGTTAGAAAGCAAAAATTGGCCTCTAATAGTATCTGCTTATACACTATCAAAAGCAGCATTAAATGGTTACACAAGAATATTGGCTAAGAAATATCCAAATTTTCTCATAAATTGTGTTTGTCCAGGTTATGTAAAAACTGATTTATGTTA</genome_strand>
        <mrna_strand>AACAGCAAGAGATGAGAAAAAAGGGAATGAAGCTGTTATTAATATGGATGAACACTCTAATTATAATATCATTTTTCATCAACTTGATGTGACTAACATTTCTAGTATTGTAACACTCAGAGATTTCATCAAGAATAGATTTGGCAAACTTGATATCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATGCGGCAATTCTTGGAGTGCTTTTAGATAAAGATTTCATTATAAACCCACAA...............................................................................................................................................................................................................................................................CAAAATTTATTCATTGAGAAGATGAAAGTAGCAACTCAAACTATTGATATAGGTGAAGAATGCATAAAAACAAATTACTATGGTGCAAAATGGATGATACAAGAATTATTACCTCTACTTCAATTATCCGATTCGCCACGTATTGTCAATGTCTCCTCCTCTACTGGAAAGCTCCAA...............................................................................CATGTACGCAATGAATGGGCTATAGGAGTCTTGAATGATTGTGACAATCTAACAGAAGACAAAGTGGATGAGGTTTTGAATGTTTTTCTCAAAGATTTCAAAGAGGATTTGTTAGAAAGCAAAAATTGGCCTCTAATAGTATCTGCTTATACACTATCAAAAGCAGCATTAAATGGTTACACAAGAATATTGGCTAAGAAATATCCAAATTTTCTCATAAATTGTGTTTGTCCAGGTTATGTAAAAACTGATTTATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260980" ref_strand="+" ref_description="SGN-E260980 [cLEG-55-N16]">
      <seq>ataaccaaaattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtagacagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcttactcgagggtcatggcaaagaagcatccgtctatacagatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26844" stop="29870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27144" g_stop="27185" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="289" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="361" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="541" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29348" g_stop="29570" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="764" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E260980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27144" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATT</genome_strand>
        <mrna_strand>ATAACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254888" ref_strand="+" ref_description="SGN-E254888 [cLEG-33-P6]">
      <seq>ataaccaaaattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtagacagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcnaattggcaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26844" stop="29703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27144" g_stop="27185" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="289" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="361" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="543" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29348" g_stop="29403" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="599" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E254888" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27144" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTC-AATTGG-AATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGA</genome_strand>
        <mrna_strand>ATAACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCNAATTGGCAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698186" ref_strand="+" ref_description="SGN-E698186 [FA05CB05]">
      <seq>cgcaatattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtaggcagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaatgcttactcgagggtcatggcaaagaagcatccgtctatacagatcaattgtgcctgtcctggttttgtgaaacagatatcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26849" stop="29907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27147" g_stop="27185" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="286" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="358" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="538" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29348" g_stop="29607" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="797" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E698186" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27147" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTT</genome_strand>
        <mrna_strand>CGCAATATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGGCAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAATGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGCCTGTCCTGGTTTTGTG-AAACAGATATCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261835" ref_strand="+" ref_description="SGN-E261835 [cLEG-61-O10]">
      <seq>caaaattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtagacagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagannatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttncagccaaaggctggccttnctttaatgtcagcttacatagtctctaaagcagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26849" stop="29816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27149" g_stop="27185" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="284" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="356" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="536" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29348" g_stop="29516" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="706" r_length="170" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E261835" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27149" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTT-CTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAA</genome_strand>
        <mrna_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGANNATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTNCAGCCAAAGGCTGGCCTTNCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258274" ref_strand="+" ref_description="SGN-E258274 [cLEG-49-M3]">
      <seq>caaaattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtagacagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26849" stop="29077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27149" g_stop="27185" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="284" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="356" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28777" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="410" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E258274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27149" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTG</genome_strand>
        <mrna_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259130" ref_strand="+" ref_description="SGN-E259130 [cLEG-41-F22]">
      <seq>caaaattattatcgatggcagaaggcagagcaacaaagtatgcagtagttacaggggcaaataaagggattggatttgaaatatgtagacagctagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="26849" stop="29076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27149" g_stop="27185" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27652" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="284" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="356" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28724" g_stop="28776" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="409" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E259130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27149" e_stop="27185"/>
          <exon e_start="27406" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAAGTAATTTACTATACCCTATTATCTTATCTGATTTTATGTGTTATATTTTCCTTTTATTTGTTTACTTTATCTTATAGAGAAAAAATATATATAGATGTTTCTAAGTTTCAAATGATTAATTTTCATTTTCTATTTTATCATAACCATAGGTTTTAATAACTACATAAGCAATTTGAGTTGATTCAAATTATGTCACATAAATTGATGGATATGCGCGCAGGTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTT</genome_strand>
        <mrna_strand>CAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA............................................................................................................................................................................................................................GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479451" ref_strand="+" ref_description="SGN-E479451 [cSTD-9-P10]">
      <seq>ggcaaacaaagggattggatttgaaatatgtaggcagctagcttctcatggagtgttggtgattttgggtgctagagatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagataaaatttggcaggcttgatatcttggtgaataatgcaggaatagctggagtcaatgctgatgttgatgccttaagagctaaacaagagtccagtgggacaggaggatctcaagtcaattggaatgacatattgactcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgtgaagagaatgactgaagcatttattccactcctccaattatctaagtcgccgaggattgtgaatgtttcatcctccatgggaaagctaaagaacttgaaacatgaatgggctacaggaatattaaatgacagcgaaaacctgacagaagagaaaatagaaggggtgataaatcaatatctgaaggatttcaaagaagatacacttcaaaccaagggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcgtactcgagggtcatgacaaagaagcatccgtctatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27124" stop="29863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27424" g_stop="27652" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="301" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.621" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="481" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29563" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="697" r_length="216" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E479451" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27424" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAG</genome_strand>
        <mrna_strand>GGCAAACAAAGGGATTGGATTTGAAATATGTAGGCAGCTAGCTTCTCATGGAGTGTTGGTGATTTTGGGTGCTAGAGATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGATAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAATAATGCAGGAATAGCTGGAGTCAATGCTGATGTTGATGCCTTAAGAGCTAAACAAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGACATATTGACTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGTGAAGAGAATGACTGAAGCATTTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTTTCATCCTCCATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACAGGAATATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGGGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATACACTTCAAACCAAGGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCGTACTCGAGGGTCATGACAAAGAAGCATCCGTCTATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428293" ref_strand="+" ref_description="SGN-E428293 [STM-50-G1]">
      <seq>ggcaaacaaagggattggatttgaaatatgtaggcagctagcttctcatggagtgttggtgattttgggtgctagagatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagataaaatttggcaggcttgatatcttggtgaataatgcaggaatagctggagtcaatgctgatgttgatgccttaagagctaaacaagagtccagtgggacaggaggatctcaagtcaattggaatgacatattgactcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgtgaagagaatgactgaagcatttattccactcctccaattatctaagtcgccgaggattgtgaatgtttcatcctccatgggaaagctaaagaacttgaaacatgaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27124" stop="29667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27424" g_stop="27652" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="301" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.621" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="481" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29367" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="501" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E428293" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27424" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGC</genome_strand>
        <mrna_strand>GGCAAACAAAGGGATTGGATTTGAAATATGTAGGCAGCTAGCTTCTCATGGAGTGTTGGTGATTTTGGGTGCTAGAGATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGATAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAATAATGCAGGAATAGCTGGAGTCAATGCTGATGTTGATGCCTTAAGAGCTAAACAAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGACATATTGACTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGTGAAGAGAATGACTGAAGCATTTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTTTCATCCTCCATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214965" ref_strand="+" ref_description="SGN-E214965 [cLEC-78-D16]">
      <seq>tagcttctaatggagtgttggtaattttgggtgctagaaatgagaagagagggattgaagctttggagaaacttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27162" stop="29828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27462" g_stop="27652" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="263" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="443" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29528" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="624" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E214965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27462" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACT</genome_strand>
        <mrna_strand>TAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572684" ref_strand="+" ref_description="SGN-E572684 [31876]">
      <seq>gagaaacttacaggctttggtgtggctgaacaatgtggtgtttcatcagcttgatgtcgtggataattctagtattgattcattggctgaatttattaagacaaaatttggcaggcttgatatcttggtatattgttcttgatttaagtttcttgttttatgaccaaaacaatttggtaaaatgaactgttgattttgtgtttttttttttgattaggtgaataatgcaggaatagctggagtcaatgcagatgctgatgccttaagatctaaacaagagtccagtgggacaggaggatctcaagtcaattggaatgacatactgactcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgtgaagagaatgactgaagcatttattccactcctccaattatcaaagtcgccgaggattgtgaatgtttcttcctccatgggaaagctaaagaacttgaaaccatgaatgggctaaaggagtattgaatgacagtgaaaacctgacagaagagaaaatagaagaggtcgatcaaatcactatctgaaggatttcaaagaagatccacttaaagccaagggcctggcttctttaatgtcagttacatagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27227" stop="29806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27527" g_stop="27816" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="0.92"/>
            <acceptor a_prob="0.621" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="469" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29348" g_stop="29506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="630" r_length="161" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E572684" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27527" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTTAAAGGCTTTGGTTTGGCTGAA-AATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTT-TGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAA-CATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGT-GAT-AAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCT</genome_strand>
        <mrna_strand>GAGAAACTTACAGGCTTTGGTGTGGCTGAACAATGTGGTGTTTCATCAGCTTGATGTCGTGGATAATTCTAGTATTGATTCATTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATATTGTTCTTGA-TTTAAGTTTCTTGTTTTATGACCAAAAC-A-ATTTGGTAAAATGAACTGTTGATTTTGTGTTTTTTTTTTTGATTAGGTGAATAATGCAGGAATAGCTGGAGTCAATGCAGATGCTGATGCCTTAAGATCTAAACAAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGACATACTGACTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGTGAAGAGAATGACTGAAGCATTTATTCCACTCCTCCAATTATCAAAGTCGCCGAGGATTGTGAATGTTTCTTCCTCCATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACCATGAATGGGCTAAAGGAGTATTGAATGACAGTGAAAACCTGACAGAAGAGAAAATAGAAGAGGTCGATCAAATCACTATCTGAAGGATTTCAAAGAAGATCCACTTAAAGCCAAGGGCCTGGCTTCTTTAATGTCAG-TTACATAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378021" ref_strand="+" ref_description="SGN-E378021 [TUS-21-B10]">
      <seq>ttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcttactcgagggtcatggcaaagaagcatccgtctatacagatcaattgtgtctgtcctggttttgtgaaaacagatttcaatttcaatagtgggatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27234" stop="29924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27534" g_stop="27652" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="191" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="371" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29624" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="648" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E378021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27534" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTTCAATAGTGGGATATTGT</genome_strand>
        <mrna_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATTTCAATTTCAATAGTGGGATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231978" ref_strand="+" ref_description="SGN-E231978 [cLED-7-M11]">
      <seq>ttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcttactcgagggtcatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27234" stop="29842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27534" g_stop="27652" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="191" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="371" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29542" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="566" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E231978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27534" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCA</genome_strand>
        <mrna_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231902" ref_strand="+" ref_description="SGN-E231902 [cLED-7-N11]">
      <seq>ttaaaggctttggtttggctgaaaatgtggtgtttcatcagcttgatgttgtggataattctagtattgattctttggctgaatttattaagacaaaatttggcaggcttgatatcttggtgaacaatgcaggaatagctggagtcagtgctgatgctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27234" stop="29803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27534" g_stop="27652" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27745" g_stop="27816" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="191" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="371" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29348" g_stop="29503" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="527" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E231902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27534" e_stop="27652"/>
          <exon e_start="27745" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTC</genome_strand>
        <mrna_strand>TTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG............................................................................................GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228315" ref_strand="+" ref_description="SGN-E228315 [cLED-3-C21]">
      <seq>ctgatgccttaagagctaaacgagagtccagtgggacaggaggatctcaagtcaattggaatgaaatattgagtcagtcatttgagttggcaaaggagtgtcttgagacaaactattatggtgcgaagaaaatgactgaagcatgtattccactcctccaattatctaagtcgccgaggattgtgaatgtatcatcctctatgggaaagctaaagaacttgaaacatgaatgggctactggagtattaaatgacagcgaaaacctgacagaagagaaaatagaagaggtgataaatcaatatctgaaggatttcaaagaagattcacttcaagccaaaggctggccttctttaatgtcagcttacatagtctctaaagcagcaatgaacgcttactcgagggtcatggcaaagaagcatccgtctatacagatcaattgtgtctgtcctggttttgtgaaaacagatatcaatttcaatagtgggatattgtctattgaagaaggcgcggagagtcctgtaaggcttgctctacagcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="27482" stop="29976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27782" g_stop="27816" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28724" g_stop="28903" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="215" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29348" g_stop="29676" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="544" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E228315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27782" e_stop="27816"/>
          <exon e_start="28724" e_stop="28903"/>
          <exon e_start="29348" e_stop="29676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGGGTAACCCCTTATAACTTGAATCAATTACTCCATCCGTTTCAATTTGTTGCGCTGGCTATTTACTTTTGTTGCTGCACCTGTGTTGGGTTCTCCAAAATTACACAACTTTTGGAGAATCCAACTCGCACTCATTAACATTGTTAAGAGTTTGAGCAACCTAGCTTAGCTTATGATGGAGTTTAAGAAAATAAAAAAGACTTTTGAATCTTGTGGTCTTAAACTAAAGATACTTAGAAGGTACCAAAATGACATTGATCTTGTGGTTAAACATGTCACATGGAAAATTAAAATTAAAGAGCTGTCAAACTATGAAAAAGAGCAAACACATTGAAACGGAGGAATAACTATATATGTCTTAATACATAATTGATTGTTGTATGACAAATATGAAGTGTAATATAGCAGTTTTGTTACCATTTTCATCAGGCTACTAATTGATGCTTATCATAGATATTTGCTTGTAACTTAGTGCCTAATTGATTGTGCAAGAAGTTATCAATTGATGCTTATTATAGAGATTTACTTGTAATTAAACTTCCCTGTAATTATAGTTACCGTCATTGCATCATATCATAATGTATGTTCTGTGACGCGTCTAAGAGAATTCACAACCCCGAAAGTTTCTTAATTAGGCACGCAATACGCTCAAAGCAACTATACCAGATCTTTCATTATACTACATGTTTGATCAATTTATGTGCAACTTGATTTGGATTGAGGTTTCTGCTGTAGCCCTGTACATAGTGATCTAGAAACAGAACAGGTCCTGTTTAATGAGTCTATTAGGTTCAACAATCAAGCAAATCAGTAGCCATAACTCTCGCTCGTTCTCTCTTTGTGGAAAATTAAACTTTTGACACGTAACTTCATCATTAGCACGCTTTATTAATCTTTCTCTGTGCTATAGACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAGGTATTAACCTGGCAACATTTCTTCAGAGTTTTGTAATTTTTCAGTTTACTGTGATTTAACTTCTAGATTTTTATGTTTATACATGCTTGACTGGTGCAAATGATATATTCTGAAGTAAAAGTATTGATTAAAAGTTTGAAACTACTCAAATCTGCAATTGCGTACTAAAGAAATGCCGTTAAAGCAATTGATCCAGGAAAAAACTTTTCAGATGTGGATAGGAGGACCAGAACATGTTTACTAAGCCTTAATCCGACATCCGGAGGATAAAAATTATGAAGGAAATGTTTGTCTGCGGAACACTTAACAATCCCAGCAAACTTAATATGTATATCTTAAATGATTAAGGTTCTTTATCAGCAAATTTGATAATTTCAATTTTCTTGTATGTTAATTAGATAATATCCATGAGTAGTGAGTGAAAATTTCTGTTTGCATTTCCAGAACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTTCAATAGTGGGATATTGTCTATTGAAGAAGGCGCGGAGAGTCCTGTAAGGCTTGCTCTACAGCCTGATGA</genome_strand>
        <mrna_strand>CTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTTCAATAGTGGGATATTGTCTATTGAAGAAGGCGCGGAGAGTCCTGTAAGGCTTGCTCTACAGCCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687629" ref_strand="+" ref_description="SGN-E687629 [T3_tus_79_C12]">
      <seq>cctttaaaatggacaaaaaatatcctttcaataatggcagacattatcaccagcctccagagcacaaggtatgcagtagtgactggagggaacaagggaataggatatgaaacatgcaagcaattagcaagcaacggagtagtggtagtgttgacatcaagagatgaaaaaagagggattgaagctatggaaaggcttaaaaaggagttagacattactgatcagatcttgtttcatcaacttgatgttatggatacacttagtatttcttcacttgtgaacttcatcaacacaaaatttggaaggcttgatattctggttaataacgctggggttggtggatcaatgatggaagaaaattgtaatattcttacaataaaagatttaatagaaggagatttcgtaaccatttctactaaaaatgaagttgtggacgaaagtgttgtggagaaatcaattgaaggtatcgctacaaattatgagttgacaaagcaatgtgtagagacaaactactatggtgcaaaaagaatgattgaagcatttgctcctctccttcaactctctaattcaccaaggatcgttaatgttgcttcttccttaggaaaattgaagttattgtgtaacgaatgggctaaaaatgtgctaagtgatgcaaaaagcctaacagaagaaaggatagagcaagtgttaaatgaatttctcaaagattttagagaaaattcagttgaatccaaaggatggccaacttactttgcagcttacaaagtgtcaaaagcatcgttgattgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="38072" stop="40482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38360" g_stop="38430" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38431" i_stop="38515" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38516" g_stop="38765" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="318" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38766" i_stop="39493" i_length="728">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39494" g_stop="39601" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="426" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39602" i_stop="39716" i_length="115">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39717" g_stop="39902" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="612" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39903" i_stop="40003" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40004" g_stop="40182" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="791" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E687629" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38360" e_stop="38430"/>
          <exon e_start="38516" e_stop="38765"/>
          <exon e_start="39494" e_stop="39601"/>
          <exon e_start="39717" e_stop="39902"/>
          <exon e_start="40004" e_stop="40182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATACACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAGGTAATTTTAACTAATAACTATTGGTGTATATTACTTAAATTCTCGCGAGCGTAAAATCGATCTAAGAAATATGTGGTATGATTAGGTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTGGTAACTACTATTCATATCACTGATGACTTATTTTTATTAAGATTAAGATGTTTAAAAGAAATGATATACCTCTAGTTTGAGTTACGATTCAAATATATTCCTACATTATTAAAAATATTTTAATGAATTGTCTAGTACAAAGATTGATAATGTAAGAATTAGTAAAATAGAAGTTAGTAATGCAAAGATTATCTTTTAATCAAATGTTGATTCGGGAACCACATACGATAAGCAATATTTTCAATAAGTAAAGTCTACCACAAGAAATACATCCTACCAAATTAAACATGAAAATACCAAAATATCTCTTGCGTCGATCTTCAATTTTGTGGTCCTTTATAGTAATTCCAAAATTAATACTCCTTCCGTTTTATTTTATATGAGATAATTTAACTCGATACGGAGTTTAAAATAAAAAGGAATAGTTTTAAAACTTGTGATACAAAAATGACTCATAGAAATCTATGTGGCTGGCTGTAAATCATTTTAATTAAGAGTATGAAGAATATTTTATAGCTAAATTGTTATTTAATATAAAATATGTCATTTATTTTTAAACTGACCCAAAAACAATAAAGGAAAATTGCATAAATTAGAACATAGAGTATATACATCAAACTCTCCCCTAATTTGAGGGGACATGTATGATTGGAAAACGTGTATTCTTTTTTTCTTTTAATTTTTTGACTTTCAAAAAAATGAGAATTTATGAATGCTTTAATTTGCAGGTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAAGTAATACAGATTATTTCATTTTCAAAAAAATAAATTATTATATTTATGTTATAACATAGTAGTACACATAGATTAAAGTTGATCGATATCAAAAATCGTTTAATTAATTACGTAGGTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAAGGATCGTTAATGTTGCTTCTTCCTTAGGAAAATTGAAGGTAATTAACTAAACACTTTATCTATTTATTTTTACTCATCCACTATACTATTTTGATATTGTACGATTGGTATTGAGTAATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTAGAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTA</genome_strand>
        <mrna_strand>CCTTTA-A--AATGGACAAAAAATATCCTTTCAATAATGGCAGACATTATCACCAGCCTCCAGAGCACAAG.....................................................................................GTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAA...................................................................................................................GTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAAGGATCGTTAATGTTGCTTCTTCCTTAGGAAAATTGAAG.....................................................................................................TTATTGTGTAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTAGAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322709" ref_strand="+" ref_description="SGN-E322709 [cTOB-26-P17]">
      <seq>actgttggacaaaaaatatcctttcaataatggcagagaaaatcaccagcctccagagcacaaggtatgcagtagtgactggagggaacaagggaataggatatgaaacatgcaagcaattagcaagcaacggagtagtggtagtgttgacatcaagagatgaaaaaagagggattgaagctatggaaaggcttaaaaaggagttagacattactgatcagatcttgtttcatcaacttgatgttatggatacacttagtatttcttcacttgtgaacttcatcaacacaaaatttggaaggcttgatattctggttaataacgctggggttggtggatcaatgatggaagaaaattgtaatattcttacaataaaagatttaatagaaggagatttcgtaaccatttctactaaaaatgaagttgtggacgaaagtgttgtggagaaatcaattgaaggtatcgctacaaattatgagttgacaaagcaatgtgtagagacaaactactatggtgcaaaaagaatgattgaagcatttgctcctctccttcaactctctattcaccaaggatcgttaatgttgcttcttcccttaggaaattgaagttattgtgtaacgaatgggctaaaaatgtgctaagtgatgcaaaaagctaacagaagaaagatagagcagtgttaaatgatttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="38067" stop="40394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38367" g_stop="38430" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38431" i_stop="38515" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38516" g_stop="38765" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="314" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38766" i_stop="39493" i_length="728">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39494" g_stop="39601" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="422" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39602" i_stop="39716" i_length="115">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39717" g_stop="39902" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="607" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39903" i_stop="40003" i_length="101">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40004" g_stop="40094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="694" r_length="87" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E322709" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38367" e_stop="38430"/>
          <exon e_start="38516" e_stop="38765"/>
          <exon e_start="39494" e_stop="39601"/>
          <exon e_start="39717" e_stop="39902"/>
          <exon e_start="40004" e_stop="40094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAGGTAATTTTAACTAATAACTATTGGTGTATATTACTTAAATTCTCGCGAGCGTAAAATCGATCTAAGAAATATGTGGTATGATTAGGTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTGGTAACTACTATTCATATCACTGATGACTTATTTTTATTAAGATTAAGATGTTTAAAAGAAATGATATACCTCTAGTTTGAGTTACGATTCAAATATATTCCTACATTATTAAAAATATTTTAATGAATTGTCTAGTACAAAGATTGATAATGTAAGAATTAGTAAAATAGAAGTTAGTAATGCAAAGATTATCTTTTAATCAAATGTTGATTCGGGAACCACATACGATAAGCAATATTTTCAATAAGTAAAGTCTACCACAAGAAATACATCCTACCAAATTAAACATGAAAATACCAAAATATCTCTTGCGTCGATCTTCAATTTTGTGGTCCTTTATAGTAATTCCAAAATTAATACTCCTTCCGTTTTATTTTATATGAGATAATTTAACTCGATACGGAGTTTAAAATAAAAAGGAATAGTTTTAAAACTTGTGATACAAAAATGACTCATAGAAATCTATGTGGCTGGCTGTAAATCATTTTAATTAAGAGTATGAAGAATATTTTATAGCTAAATTGTTATTTAATATAAAATATGTCATTTATTTTTAAACTGACCCAAAAACAATAAAGGAAAATTGCATAAATTAGAACATAGAGTATATACATCAAACTCTCCCCTAATTTGAGGGGACATGTATGATTGGAAAACGTGTATTCTTTTTTTCTTTTAATTTTTTGACTTTCAAAAAAATGAGAATTTATGAATGCTTTAATTTGCAGGTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAAGTAATACAGATTATTTCATTTTCAAAAAAATAAATTATTATATTTATGTTATAACATAGTAGTACACATAGATTAAAGTTGATCGATATCAAAAATCGTTTAATTAATTACGTAGGTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAAGGATCGTTAATGTTGCTTCTT-CCTTAGGAAAATTGAAGGTAATTAACTAAACACTTTATCTATTTATTTTTACTCATCCACTATACTATTTTGATATTGTACGATTGGTATTGAGTAATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCA</genome_strand>
        <mrna_strand>ACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAG.....................................................................................GTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAA...................................................................................................................GTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCT-ATTCACCAAGGATCGTTAATGTTGCTTCTTCCCTTAGG-AAATTGAAG.....................................................................................................TTATTGTGTAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAG-CTAACAGAAGAAA-GATAGAGC-AGTGTTAAATG-ATTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322585" ref_strand="+" ref_description="SGN-E322585 [cTOB-26-P18]">
      <seq>actgttggacaaaaaatatcctttcaataatggcagagaaaatcaccagcctccagagcacaaggtatgcagtagtgactggagggaacaagggaataggatatgaaacatgcaagcaattagcaagcaacggagtagtggtagtgttgacatcaagagatgaaaaaagagggattgaagctatggaaaggcttaaaaaggagttagacattactgatcagatcttgtttcatcaacttgatgttatggatacacttagtatttcttcacttgtgaacttcatcaacacaaaatttggaaggcttgatattctggttaataacgctggggttggtggatcaatgatggaagaaaattgtaatattcttacaataaaagatttaatagaaggagatttcgtaaccatttctactaaaaatgaagttgtggacgaaagtgttgtggagaaatcaattgaaggtatcgctacaaattatgagttgacaaagcaatgtgtagagacaaactactatggtgcaaaaagaatgattgaagcatttgctcctctccttcaactctctaattcaccaagatcgttaatgttgcttcttccttaggaaaaatgaagttattgtgtaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="38067" stop="40208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38367" g_stop="38430" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38431" i_stop="38515" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38516" g_stop="38765" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="314" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38766" i_stop="39493" i_length="728">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39494" g_stop="39601" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="422" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39602" i_stop="39716" i_length="115">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39717" g_stop="39902" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="607" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39903" i_stop="40003" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40004" g_stop="40016" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="620" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E322585" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38367" e_stop="38430"/>
          <exon e_start="38516" e_stop="38765"/>
          <exon e_start="39494" e_stop="39601"/>
          <exon e_start="39717" e_stop="39902"/>
          <exon e_start="40004" e_stop="40016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAGGTAATTTTAACTAATAACTATTGGTGTATATTACTTAAATTCTCGCGAGCGTAAAATCGATCTAAGAAATATGTGGTATGATTAGGTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTGGTAACTACTATTCATATCACTGATGACTTATTTTTATTAAGATTAAGATGTTTAAAAGAAATGATATACCTCTAGTTTGAGTTACGATTCAAATATATTCCTACATTATTAAAAATATTTTAATGAATTGTCTAGTACAAAGATTGATAATGTAAGAATTAGTAAAATAGAAGTTAGTAATGCAAAGATTATCTTTTAATCAAATGTTGATTCGGGAACCACATACGATAAGCAATATTTTCAATAAGTAAAGTCTACCACAAGAAATACATCCTACCAAATTAAACATGAAAATACCAAAATATCTCTTGCGTCGATCTTCAATTTTGTGGTCCTTTATAGTAATTCCAAAATTAATACTCCTTCCGTTTTATTTTATATGAGATAATTTAACTCGATACGGAGTTTAAAATAAAAAGGAATAGTTTTAAAACTTGTGATACAAAAATGACTCATAGAAATCTATGTGGCTGGCTGTAAATCATTTTAATTAAGAGTATGAAGAATATTTTATAGCTAAATTGTTATTTAATATAAAATATGTCATTTATTTTTAAACTGACCCAAAAACAATAAAGGAAAATTGCATAAATTAGAACATAGAGTATATACATCAAACTCTCCCCTAATTTGAGGGGACATGTATGATTGGAAAACGTGTATTCTTTTTTTCTTTTAATTTTTTGACTTTCAAAAAAATGAGAATTTATGAATGCTTTAATTTGCAGGTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAAGTAATACAGATTATTTCATTTTCAAAAAAATAAATTATTATATTTATGTTATAACATAGTAGTACACATAGATTAAAGTTGATCGATATCAAAAATCGTTTAATTAATTACGTAGGTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAAGGATCGTTAATGTTGCTTCTTCCTTAGGAAAATTGAAGGTAATTAACTAAACACTTTATCTATTTATTTTTACTCATCCACTATACTATTTTGATATTGTACGATTGGTATTGAGTAATTTTCGATTTCCTATGTACAGTTATTGTGTAACG</genome_strand>
        <mrna_strand>ACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAG.....................................................................................GTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAA...................................................................................................................GTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAA-GATCGTTAATGTTGCTTCTTCCTTAGGAAAAATGAAG.....................................................................................................TTATTGTGTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214734" ref_strand="+" ref_description="SGN-E214734 [cLEC-79-J12]">
      <seq>tagaccaaaagggtaaatatcaagaatttagaactaacaattatcctttaaaaaatggcagaggaaatcagcaccctccaaagcaaaaggtatgcagtagtgactggtggaaacaaaggaataggatatgaaacatgcaagcaattagcaagcaaaggattagtggtagtgttgacatcaagagatgaaaagagagggattgaagctattgaaaggcttaaaaaggagttaaacattactaataataatgatcacattttgtttcatcaacttgatgttatggatccagctagtatttcttctcttgtggactttatcaacacaaattttggaaggctcgatattctggttaacaacgcaggggttagtggattaatggtggaaggaaatcttgttatactaaaaaatttaattgaaggagatttcgagaccatttctactgaaaatcaagttgaggacgaaagtgttgtggagaaatcaattgaaggtatcgttacaaattatgagttgacagaacaatgcatagagacaaacttttatggtgcaaaaaggatgagtgaagcatttatccctctcccttcactctctaattcaccaacgattgttaatgttgcttctttcttangaaaattgaagttattgtgtaacgaatgggctaaaaaagtgctaagtgatgcaaaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="42975" stop="44635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43275" g_stop="43363" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43364" i_stop="43468" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43469" g_stop="43727" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="348" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43728" i_stop="43803" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43804" g_stop="43905" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="450" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43906" i_stop="43994" i_length="89">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43995" g_stop="44180" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="636" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44181" i_stop="44285" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44286" g_stop="44335" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="686" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E214734" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43275" e_stop="43363"/>
          <exon e_start="43469" e_stop="43727"/>
          <exon e_start="43804" e_stop="43905"/>
          <exon e_start="43995" e_stop="44180"/>
          <exon e_start="44286" e_stop="44335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCAAAAGGGTAAATATCAAGAATTTAGAACTAACAATTATCCTTTAAAAAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAGGTAATTTAAATTATGAGTAGCTAATCTTTTTACTATCAGTGTATATAATTTAAATTTTGTTACGCATATCTGAGCAATACTAATACTGGTATATGGTATGATCAGGTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAACACAAATTTTGGAAGGCTCGATATTCTGGTAAGTAATATTTATCACTCCATCACTTTCGTATTCTTTAAAGAAATGAGAAATTATGAATACTTCAAATTTGCAGGTTAACAACGCAGGGGTTAGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATCAAGTATGAATTTTAATTTCTATTAATAAAATTACGTTTTCAAAAGTTATTAAAGTTGATCGATACCTAAAATCGTTTAATTAATTATGTAGGTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCT</genome_strand>
        <mrna_strand>TAGACCAAAAGGGTAAATATCAAGAATTTAGAACTAACAATTATCCTTTAAAAAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAG.........................................................................................................GTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAACACAAATTTTGGAAGGCTCGATATTCTG............................................................................GTTAACAACGCAGGGGTTAGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATCAA.........................................................................................GTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAGAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCCTTCACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTANGAAAATTGAAG.........................................................................................................TTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356596" ref_strand="+" ref_description="SGN-E356596 [cTOS-21-H3]">
      <seq>agagacaaacttttatggtgcaaaaaggatgagtgaagcatttatccctctccttcaactctctaattcaccaacgattgttaatgttgcttctttcttaggaaaattgaagttattgtgtaacgaatgggctaaaaaagtgctaagtgatgcaaaaagcctaacagaagaaaggatagagcaagtgttaaatgaatttctcaaagattttatagaaaattcagttgaatccaaaggatggccaacttactttgcagcttacaaagtgtcaaaagcatcgttgattgcctacacaagagttttaggttcaaaatatccgaattttcgcgttaattcggtgtgccctggctattgtggtacagacatgactgcatatactggaagtttaactgctgaagaaggtgctgaaagcttggtgaaacttgctttgttgccaaatgatggaccttctggcctcttcttttacagaaaggatgtcacctcgttttgaacatttggctaattcaacttttaagtaataacttattatcaatcaactgctccataagaaataagtcgggttggttgtatgaattatttgtctattcagctagattatgttttattcttacttgtactactttcattgcaacaacaggcctactataagtgtcatgttgctcagacacttctaaagaaaagtgaacttgagtctgaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="43769" stop="45175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44069" g_stop="44180" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44181" i_stop="44285" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44286" g_stop="44875" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="700" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E356596" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44069" e_stop="44180"/>
          <exon e_start="44286" e_stop="44875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTACACAAGAGTTTTAGGTTCAAAATATCCGAATTTTCGCGTTAATTCGGTGTGCCCTGGCTATTGTGGTACAGACATGACTGCATATACTGGAAGTTTAACTGCTGAAGAAGGTGCTGAAAGCTTGGTGAAACTTGCTTTGTTGCCAAATGATGGACCTTCTGGCCTCTTCTTTTACAGAAAGGATGTCACCTCGTTTTGAACATTTGGCTAATTCAACTTTTAAGTAATAACTTATTATCAATCAACTGCTCCATAAGAAATAAGTCGGGTTGGTTGTATGAATTATTTGTCTATTCAGCTAGATTATGTTTTATTCTTACTTGTACTACTTTCATTGCAAACAACAGGCCTACTATAAGTGTCATGTTGCTCAGACACTTCTAAAGAAAAGTTGAACTTGAGTCTGAATCC</genome_strand>
        <mrna_strand>AGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAG.........................................................................................................TTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTACACAAGAGTTTTAGGTTCAAAATATCCGAATTTTCGCGTTAATTCGGTGTGCCCTGGCTATTGTGGTACAGACATGACTGCATATACTGGAAGTTTAACTGCTGAAGAAGGTGCTGAAAGCTTGGTGAAACTTGCTTTGTTGCCAAATGATGGACCTTCTGGCCTCTTCTTTTACAGAAAGGATGTCACCTCGTTTTGAACATTTGGCTAATTCAACTTTTAAGTAATAACTTATTATCAATCAACTGCTCCATAAGAAATAAGTCGGGTTGGTTGTATGAATTATTTGTCTATTCAGCTAGATTATGTTTTATTCTTACTTGTACTACTTTCATTGC-AACAACAGGCCTACTATAAGTGTCATGTTGCTCAGACACTTCTAAAGAAAAG-TGAACTTGAGTCTGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287837" ref_strand="+" ref_description="SGN-E287837 [cLES-19-P19]">
      <seq>aaacttttatggtgcaaaaaggatgagtgaagcatttatccctctccttcaactctctaattcaccaacgattgttaatgttgcttctttcttaggaaaattgaagttattgtgtaacgaatgggctaaaaaagtgctaagtgatgcaaaaagcctaacagaagaaaggatagagcaagtgttaaatgaatttctcaaagattttatagaaaattcagttgaatccaaaggatggccaacttactttgcagcttacaaagtgtcaaaagcatcgttgattgcctacacaagagttttaggttcaaaatatccgaattttcgcgttaattcggtgtgccctggctattgtggtacagacatgactgcatatactggaagtttaactgctgaagaaggtgctgaaagcttggtgaaacttgctttgttgccaaatgatggaccttctggcctcttcttttacagaaaggatgtcacctcgttttgaacatttggctaattcaactgttaagtaataacttattatcaatcaactgctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="43775" stop="45018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44075" g_stop="44180" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44181" i_stop="44285" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44286" g_stop="44718" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="539" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E287837" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44075" e_stop="44180"/>
          <exon e_start="44286" e_stop="44718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTACACAAGAGTTTTAGGTTCAAAATATCCGAATTTTCGCGTTAATTCGGTGTGCCCTGGCTATTGTGGTACAGACATGACTGCATATACTGGAAGTTTAACTGCTGAAGAAGGTGCTGAAAGCTTGGTGAAACTTGCTTTGTTGCCAAATGATGGACCTTCTGGCCTCTTCTTTTACAGAAAGGATGTCACCTCGTTTTGAACATTTGGCTAATTCAACTTTTAAGTAATAACTTATTATCAATCAACTGCTCCAT</genome_strand>
        <mrna_strand>AAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAG.........................................................................................................TTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTACACAAGAGTTTTAGGTTCAAAATATCCGAATTTTCGCGTTAATTCGGTGTGCCCTGGCTATTGTGGTACAGACATGACTGCATATACTGGAAGTTTAACTGCTGAAGAAGGTGCTGAAAGCTTGGTGAAACTTGCTTTGTTGCCAAATGATGGACCTTCTGGCCTCTTCTTTTACAGAAAGGATGTCACCTCGTTTTGAACATTTGGCTAATTCAACTGTTAAGTAATAACTTATTATCAATCAACTGCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744421" ref_strand="+" ref_description="SGN-E744421 [GI|399650]">
      <seq>aattctgctttgcttcttgcccaattcctcaagataatctgccatccatatcatctctttcccagcttcagctattgccacaaactcagctttagtggatgaaagagaaacatacttctaaagacacggacatccaacttactgcttttccacctatggtgtaaatgtacccggacgtactcttgctcgagtcaacatccccaccaagatcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="49139" stop="48324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48841" g_stop="48624" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E744421" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48841" e_stop="48624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCTATGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTAAAG-CCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATTTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</genome_strand>
        <mrna_strand>AATTCT-GCTTTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCATCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACAAACTCAGCTTTAGTGGATGAAAGAGAAACATACTTCTAAAGACACGGACATCCAACTTACTGCTTTTCCACCTATGGTGTAAATGTACCCGGACGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423102" ref_strand="+" ref_description="SGN-E423102 [STM-41-D7]">
      <seq>caagaatctagatccaacatttatcctttcaacaatggcagaggaaatcagcacccttcaaagcacaaggtatgcagtagtgactgggggaaacaaaggaataggatatgaaacatgcaagcagttgctagcaagcaaaggagtagtggtagtgttaacatcaagagatgaaaagagagggatcgaagctattgaaaggcttaaaaaggagtcaaacattactaataataatgatcagattttgtttcatcaacttgatgttatggatccagctagtatttcttctcttgtgaactttatccacacaaaatttggaaggctcgatattctagttaacaacgcaggggttggtggattaatggtggaaggaaatcttgttatactaaaaaatttaattgagggagatttcgtgaccatttctactgaaaatgaagaagaggacgaaagtgttatggagaaatcaattgaaggtatcgttacaaattatgagttgacaaaacaatgcttagagacaaacttctatggtgcaaaaaggatgagtgaagcatttatccctctccttcaactctctaattcaccaaggattgttaatgttgcttctttcttangaaaagtaaagttattgtgcaacgaatgggctaaaaatgtgctaagtgatgcaaaaagcctaacagaagaaagggtagaccnnagtgttaatgaatttctcaaagatttacngaaaattcagtagaagccaaaggatggnncacttactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="42995" stop="56287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52543" g_stop="52611" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52612" i_stop="52716" i_length="105">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52717" g_stop="52975" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="331" r_length="262" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52976" i_stop="55352" i_length="2377">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55353" g_stop="55454" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55455" i_stop="55567" i_length="113">
            <donor d_prob="0.940" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55568" g_stop="55753" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="619" r_length="186" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55754" i_stop="55858" i_length="105">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55859" g_stop="56001" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="761" r_length="142" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E423102" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52543" e_stop="52611"/>
          <exon e_start="52717" e_stop="52975"/>
          <exon e_start="55353" e_stop="55454"/>
          <exon e_start="55568" e_stop="55753"/>
          <exon e_start="55859" e_stop="56001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTAGATCTAACAATTATCCTTTCAACAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAGGTAATTTAAATTATGAGTAGCTAATCTTTTTACTATCAGTGTATATAATTTAAATTTTGTTACGCATATCTGAGCAATACTAATACTGGTATATGGTATGATCAGGTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCA-AT--TAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAAAACAAAATTTGGAAGGCTCGATATTTTGGTAAGTAATATTTATCACTCCATCACTTAGACAGACGACTTACTTTTTAAAAAATTAAAGTGTTTGAATTTAAATACATATATTCAAATATTGAGATATACATTAACATATAAGTGTCTGGATGTTAAATAACAAAAAGTATATACTTTTCATCATTTGAATGTATAAAACCTGTTTTTATTCGAAAATTAGGAAATTTTAAAATTAAAATAAGCTACTAAATTGATGTGATACTAATTCAATATTTTAAGGAAATTATATGAGCAGTGGTGATGGTAATTGCTAGCCGTGGTGATTGTGGGTATGATAATTGACTAACCCATAATAATAGTTAACAATGGCTAATATTGATGAATAAAAATACTAGTGAATTGTGACTATGATGATTGACTAACCCATAATAATGGTTAACAATGGGTAATATTATATTGATAACTAAAAATACTAGCAAATTGTGACAATGATGATTGACTAACGTGATGTGTGCTTGTGATTGAGATTATGATAGCGATAAATGATGATAGTTGATAATAATAAATTTTAACAATTAAAAGAGAAAGTATCATTAAAAAAAGTGAAAATAAATGTAATAGTGGTAACGATTTGAATATACATCTTAATTTATAATACCAAAAAGTTGTTGTAAATCTTAATTATTCATCTTCATTGATTGAGTGGGTTGGGAATAAAAATAATACAAATATAACCACATTTATTTATTAAGATTCATAAAAATTAACAAATTCAAAGTGGAATGATAGTACGAATATGGATAAAATTGGAGAATTTTTAGGGGAATCAAATACTTAAAGTTGAGGTATGGATAAAATAGTATTAATATTATCCCCAATAATTTTTTTTATTTTTTATTTTTGGATGTGTCAAGTCAATAGTGAGAATATCTCATAATAGTTGTTCGTTATTAATTTTTACATACTTCTTAAAAATTATTCTCTCCGTTTAAAAAAAATGTTCTAATTTAATTTGTCACAGAATTTTAGAAAATAAAAAAATTCTTCATTTTTGTGGTTCTAAATTAAAGTTATGTCAAAATATATAAAATTGTCATTTAATATTGTGATATTAAACATGTCATGTGAAAAATTGAGAATAAAGTATTATCAAAAAAGGAAATAAATCATTCTTTTTGAAACAAGCTAAAAACAAAAGAAAATCATTCTTTTTTAAATGCAGAAAATATAAATAAAAGAATAATTTTACTATATTACCTTTTAATATATAAATATATTATCTTAAAACACGTAAGAGAAAAATTATTATAATTAATAATAAAAATAAATTATAAAATTATTTATTAATTTAATAAAATAAACAAATATTATTAAATATCTTAAAATAATATAACAGACCACTAATATGGAACGGAGTGCGTATAATATTATTTTCCTGATAGGGTGTAAAATATATTGTCCTTGTCCTTAAGATCTACAAAATTAATTGCAATTTATTTTAATAAACATTCTTTTCCTAGTGGAGATCAAGCTCATCGCATGTAACACAAAAAGACAGTCAATTTTTTATATAGTGGCGGTAAAATATGCAACCAAGATTTTTTAATATTATTCTCATAAAACTATGTCATGAAAATTTAACTAATATAAAAGTTTTATATAACTGATTTAATTTAATCTTTTCAATTAATTTTTACTTAAAATTTAAATCAAAGTTATTATGCCAGTTCAAAATTTTTTAAATCAAATAACTAAAAAGAATATCAACTTCTTTAATTTTCTTTGAATTGATTTGGTCTTCTATTTTATTTGATTTGTTTATTTCCTATAACACCCTTCAATAGTAATTGTCATTTTCTTATCTCTCATTTGTCTGATAAATTGACTCTATTTTAACCACATAAAGAAAAAAGAGAGATTATTTATTGTTTTCTCAAAATTCTACTTACATTATTTAATGTTTATGATAAAACATGAAAAAATATAATTATTTTTTATTAATATAATAAAAGTGACAAATAAAAATGAAAAAAAATATATGTTAAAAATAAATGACAAACAAAAATAAACAGAGAGAGTTACTTCGGTTGATGAGTATTGGTTGGAAAAAGTATTAATCTCTTCTAATTTAGAAATACTCCCACATTTAGCGACATTTTCTCGATAAAAAATTAGACCAAGAAATAAATTTTTTAGTCCTAATTAAACAACAAAATTAATATGGAGACTACTTATTATAAAAATAATTCAAAAATCTATATGAATTATTTTACCATGATAAATCGTGAATTATTCCACTAGTTACACTCTTTCTGAATTAAGTTCTTTAATTTGATTCCTTTCGTTTCATCAATCAATTTATATTCGTTAAAGAAATGAGAATTTATAAATACCTTAATTTGCAGGTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATGAAGTAATGCAAATTATTTCATTTTAAAAAATAATAATAATTATATATATGTTCTAACATAGTAGTACACAGATTAAAGTTGATCGATACCTAAAATCGTTTAATTAATTATGTAGGTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGC-AAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGC</genome_strand>
        <mrna_strand>CAAGAATCTAGATCCAACATTTATCCTTTCAACAATGGCAGAGGAAATCAGCACCCTTCAAAGCACAAG.........................................................................................................GTATGCAGTAGTGACTGGGGGAAACAAAGGAATAGGATATGAAACATGCAAGCAGTTGCTAGCAAGCAAAGGAGTAGTGGTAGTGTTAACATCAAGAGATGAAAAGAGAGGGATCGAAGCTATTGAAAGGCTTAAAAAGGAGTCAAACATTACTAATAATAATGATCAGATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGAACTTTATCCACACAAAATTTGGAAGGCTCGATATTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAGGGAGATTTCGTGACCATTTCTACTGAAAATGAA.................................................................................................................GAAGAGGACGAAAGTGTTATGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCTTAGAGACAAACTTCTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAAGGATTGTTAATGTTGCTTCTTTCTTANGAAAAGTAAAG.........................................................................................................TTATTGTGCAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGGTAGACCNNAGTGTT-AATGAATTTCTCAAAGA-TTTACNGAAAATTCAGTAGAAGCCAAAGGATGGNNCACTTACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449730" ref_strand="+" ref_description="SGN-E449730 [cSTS-7-G24]">
      <seq>caagaatctagatccaacatttatcctttcaacaatggcagaggaaatcagcacccttcaaagcacaaggtatgcagtagtgactgggggaaacaaaggaataggatatgaaacatgcaagcagttgctagcaagcaaaggagtagtggtagtgttaacatcaagagatgaaaagagagggatcgaagctattgaaaggcttaaaaaggagtcaaacattactaataataatgatcagattttgtttcatcaacttgatgttatggatccagctagtatttcttctcttgtgaactttatccacacaaaatttggaaggctcgatattctagttaacaacgcaggggttggtggattaatggtggaaggaaatcttgttatactaaaaaatttaattgagggagatttcgtgaccatttctactgaaaatgaagaagaggacgaaagtgttatggagaaatcaattgaaggtatcgttacaaattatgagttgacaaaacaatgcttagagacaaacttctatggtgcaaaaaggatgagtgaagcatttatccctctccttcaactctctaattcaccaaggattgttaatgttgcttctttcttaggaaagttaaagttattgtgcaacgaatgggctaaaaatgtgctaagtgatgcaaaaagcctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="42995" stop="61405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52543" g_stop="52611" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52612" i_stop="52716" i_length="105">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52717" g_stop="52975" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="331" r_length="262" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52976" i_stop="55352" i_length="2377">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55353" g_stop="55454" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55455" i_stop="55567" i_length="113">
            <donor d_prob="0.940" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55568" g_stop="55753" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="619" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55754" i_stop="55858" i_length="105">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55859" g_stop="55911" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="672" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E449730" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52543" e_stop="52611"/>
          <exon e_start="52717" e_stop="52975"/>
          <exon e_start="55353" e_stop="55454"/>
          <exon e_start="55568" e_stop="55753"/>
          <exon e_start="55859" e_stop="55911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTAGATCTAACAATTATCCTTTCAACAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAGGTAATTTAAATTATGAGTAGCTAATCTTTTTACTATCAGTGTATATAATTTAAATTTTGTTACGCATATCTGAGCAATACTAATACTGGTATATGGTATGATCAGGTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCA-AT--TAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAAAACAAAATTTGGAAGGCTCGATATTTTGGTAAGTAATATTTATCACTCCATCACTTAGACAGACGACTTACTTTTTAAAAAATTAAAGTGTTTGAATTTAAATACATATATTCAAATATTGAGATATACATTAACATATAAGTGTCTGGATGTTAAATAACAAAAAGTATATACTTTTCATCATTTGAATGTATAAAACCTGTTTTTATTCGAAAATTAGGAAATTTTAAAATTAAAATAAGCTACTAAATTGATGTGATACTAATTCAATATTTTAAGGAAATTATATGAGCAGTGGTGATGGTAATTGCTAGCCGTGGTGATTGTGGGTATGATAATTGACTAACCCATAATAATAGTTAACAATGGCTAATATTGATGAATAAAAATACTAGTGAATTGTGACTATGATGATTGACTAACCCATAATAATGGTTAACAATGGGTAATATTATATTGATAACTAAAAATACTAGCAAATTGTGACAATGATGATTGACTAACGTGATGTGTGCTTGTGATTGAGATTATGATAGCGATAAATGATGATAGTTGATAATAATAAATTTTAACAATTAAAAGAGAAAGTATCATTAAAAAAAGTGAAAATAAATGTAATAGTGGTAACGATTTGAATATACATCTTAATTTATAATACCAAAAAGTTGTTGTAAATCTTAATTATTCATCTTCATTGATTGAGTGGGTTGGGAATAAAAATAATACAAATATAACCACATTTATTTATTAAGATTCATAAAAATTAACAAATTCAAAGTGGAATGATAGTACGAATATGGATAAAATTGGAGAATTTTTAGGGGAATCAAATACTTAAAGTTGAGGTATGGATAAAATAGTATTAATATTATCCCCAATAATTTTTTTTATTTTTTATTTTTGGATGTGTCAAGTCAATAGTGAGAATATCTCATAATAGTTGTTCGTTATTAATTTTTACATACTTCTTAAAAATTATTCTCTCCGTTTAAAAAAAATGTTCTAATTTAATTTGTCACAGAATTTTAGAAAATAAAAAAATTCTTCATTTTTGTGGTTCTAAATTAAAGTTATGTCAAAATATATAAAATTGTCATTTAATATTGTGATATTAAACATGTCATGTGAAAAATTGAGAATAAAGTATTATCAAAAAAGGAAATAAATCATTCTTTTTGAAACAAGCTAAAAACAAAAGAAAATCATTCTTTTTTAAATGCAGAAAATATAAATAAAAGAATAATTTTACTATATTACCTTTTAATATATAAATATATTATCTTAAAACACGTAAGAGAAAAATTATTATAATTAATAATAAAAATAAATTATAAAATTATTTATTAATTTAATAAAATAAACAAATATTATTAAATATCTTAAAATAATATAACAGACCACTAATATGGAACGGAGTGCGTATAATATTATTTTCCTGATAGGGTGTAAAATATATTGTCCTTGTCCTTAAGATCTACAAAATTAATTGCAATTTATTTTAATAAACATTCTTTTCCTAGTGGAGATCAAGCTCATCGCATGTAACACAAAAAGACAGTCAATTTTTTATATAGTGGCGGTAAAATATGCAACCAAGATTTTTTAATATTATTCTCATAAAACTATGTCATGAAAATTTAACTAATATAAAAGTTTTATATAACTGATTTAATTTAATCTTTTCAATTAATTTTTACTTAAAATTTAAATCAAAGTTATTATGCCAGTTCAAAATTTTTTAAATCAAATAACTAAAAAGAATATCAACTTCTTTAATTTTCTTTGAATTGATTTGGTCTTCTATTTTATTTGATTTGTTTATTTCCTATAACACCCTTCAATAGTAATTGTCATTTTCTTATCTCTCATTTGTCTGATAAATTGACTCTATTTTAACCACATAAAGAAAAAAGAGAGATTATTTATTGTTTTCTCAAAATTCTACTTACATTATTTAATGTTTATGATAAAACATGAAAAAATATAATTATTTTTTATTAATATAATAAAAGTGACAAATAAAAATGAAAAAAAATATATGTTAAAAATAAATGACAAACAAAAATAAACAGAGAGAGTTACTTCGGTTGATGAGTATTGGTTGGAAAAAGTATTAATCTCTTCTAATTTAGAAATACTCCCACATTTAGCGACATTTTCTCGATAAAAAATTAGACCAAGAAATAAATTTTTTAGTCCTAATTAAACAACAAAATTAATATGGAGACTACTTATTATAAAAATAATTCAAAAATCTATATGAATTATTTTACCATGATAAATCGTGAATTATTCCACTAGTTACACTCTTTCTGAATTAAGTTCTTTAATTTGATTCCTTTCGTTTCATCAATCAATTTATATTCGTTAAAGAAATGAGAATTTATAAATACCTTAATTTGCAGGTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATGAAGTAATGCAAATTATTTCATTTTAAAAAATAATAATAATTATATATATGTTCTAACATAGTAGTACACAGATTAAAGTTGATCGATACCTAAAATCGTTTAATTAATTATGTAGGTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAAC</genome_strand>
        <mrna_strand>CAAGAATCTAGATCCAACATTTATCCTTTCAACAATGGCAGAGGAAATCAGCACCCTTCAAAGCACAAG.........................................................................................................GTATGCAGTAGTGACTGGGGGAAACAAAGGAATAGGATATGAAACATGCAAGCAGTTGCTAGCAAGCAAAGGAGTAGTGGTAGTGTTAACATCAAGAGATGAAAAGAGAGGGATCGAAGCTATTGAAAGGCTTAAAAAGGAGTCAAACATTACTAATAATAATGATCAGATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGAACTTTATCCACACAAAATTTGGAAGGCTCGATATTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAGGGAGATTTCGTGACCATTTCTACTGAAAATGAA.................................................................................................................GAAGAGGACGAAAGTGTTATGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCTTAGAGACAAACTTCTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAAGGATTGTTAATGTTGCTTCTTTCTTAGGAAAGTTAAAG.........................................................................................................TTATTGTGCAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724585" ref_strand="+" ref_description="SGN-E724585 [FC24CC06]">
      <seq>aatgggcagaggaaatcagcaccctccaaagcaaaaggtatgcaatagtgaccggaggaaacaaaggaataggatatgaaacatgcaagcaattagcaagcaaaggattagtggtagtgttgacatcaagagatgaaaagagagggattgaagctattgaaaggcttaaaaaggagttaaacattactaataataatgatcacattttgtttcatcaacttgatgttatggatccagctagtatttcttctcttgtggactttatcaaaacaaaatttggaaggctcgatattttggttaacaacgcaggggttggtggattaatggtggaaggaaatcttgttatactaaaaaatttaattgaaggagatttcgagaccatttctactgaaaatgaagttgaggacaaaagtgttgtggagaaatcaattgaaagtatcgttacaaattatgagttgacaaaacaatgcatagagacaaacttttatggtgcaaaaaggatgagtgaagcatttatccctctccttcaactctccaattcaccaacgattgttaatgttgcttctttcttaggaaagttgaagttattgtgtaacgaatgggctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="43028" stop="56185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52576" g_stop="52611" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52612" i_stop="52716" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52717" g_stop="52975" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="296" r_length="259" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52976" i_stop="55352" i_length="2377">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55353" g_stop="55454" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="398" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55455" i_stop="55567" i_length="113">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55568" g_stop="55753" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="584" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55754" i_stop="55858" i_length="105">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55859" g_stop="55885" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="611" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E724585" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52576" e_stop="52611"/>
          <exon e_start="52717" e_stop="52975"/>
          <exon e_start="55353" e_stop="55454"/>
          <exon e_start="55568" e_stop="55753"/>
          <exon e_start="55859" e_stop="55885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAT-GGCAGAGGAAATCAGCACCCTCCAAAGCAAAAGGTAATTTAAATTATGAGTAGCTAATCTTTTTACTATCAGTGTATATAATTTAAATTTTGTTACGCATATCTGAGCAATACTAATACTGGTATATGGTATGATCAGGTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAAAACAAAATTTGGAAGGCTCGATATTTTGGTAAGTAATATTTATCACTCCATCACTTAGACAGACGACTTACTTTTTAAAAAATTAAAGTGTTTGAATTTAAATACATATATTCAAATATTGAGATATACATTAACATATAAGTGTCTGGATGTTAAATAACAAAAAGTATATACTTTTCATCATTTGAATGTATAAAACCTGTTTTTATTCGAAAATTAGGAAATTTTAAAATTAAAATAAGCTACTAAATTGATGTGATACTAATTCAATATTTTAAGGAAATTATATGAGCAGTGGTGATGGTAATTGCTAGCCGTGGTGATTGTGGGTATGATAATTGACTAACCCATAATAATAGTTAACAATGGCTAATATTGATGAATAAAAATACTAGTGAATTGTGACTATGATGATTGACTAACCCATAATAATGGTTAACAATGGGTAATATTATATTGATAACTAAAAATACTAGCAAATTGTGACAATGATGATTGACTAACGTGATGTGTGCTTGTGATTGAGATTATGATAGCGATAAATGATGATAGTTGATAATAATAAATTTTAACAATTAAAAGAGAAAGTATCATTAAAAAAAGTGAAAATAAATGTAATAGTGGTAACGATTTGAATATACATCTTAATTTATAATACCAAAAAGTTGTTGTAAATCTTAATTATTCATCTTCATTGATTGAGTGGGTTGGGAATAAAAATAATACAAATATAACCACATTTATTTATTAAGATTCATAAAAATTAACAAATTCAAAGTGGAATGATAGTACGAATATGGATAAAATTGGAGAATTTTTAGGGGAATCAAATACTTAAAGTTGAGGTATGGATAAAATAGTATTAATATTATCCCCAATAATTTTTTTTATTTTTTATTTTTGGATGTGTCAAGTCAATAGTGAGAATATCTCATAATAGTTGTTCGTTATTAATTTTTACATACTTCTTAAAAATTATTCTCTCCGTTTAAAAAAAATGTTCTAATTTAATTTGTCACAGAATTTTAGAAAATAAAAAAATTCTTCATTTTTGTGGTTCTAAATTAAAGTTATGTCAAAATATATAAAATTGTCATTTAATATTGTGATATTAAACATGTCATGTGAAAAATTGAGAATAAAGTATTATCAAAAAAGGAAATAAATCATTCTTTTTGAAACAAGCTAAAAACAAAAGAAAATCATTCTTTTTTAAATGCAGAAAATATAAATAAAAGAATAATTTTACTATATTACCTTTTAATATATAAATATATTATCTTAAAACACGTAAGAGAAAAATTATTATAATTAATAATAAAAATAAATTATAAAATTATTTATTAATTTAATAAAATAAACAAATATTATTAAATATCTTAAAATAATATAACAGACCACTAATATGGAACGGAGTGCGTATAATATTATTTTCCTGATAGGGTGTAAAATATATTGTCCTTGTCCTTAAGATCTACAAAATTAATTGCAATTTATTTTAATAAACATTCTTTTCCTAGTGGAGATCAAGCTCATCGCATGTAACACAAAAAGACAGTCAATTTTTTATATAGTGGCGGTAAAATATGCAACCAAGATTTTTTAATATTATTCTCATAAAACTATGTCATGAAAATTTAACTAATATAAAAGTTTTATATAACTGATTTAATTTAATCTTTTCAATTAATTTTTACTTAAAATTTAAATCAAAGTTATTATGCCAGTTCAAAATTTTTTAAATCAAATAACTAAAAAGAATATCAACTTCTTTAATTTTCTTTGAATTGATTTGGTCTTCTATTTTATTTGATTTGTTTATTTCCTATAACACCCTTCAATAGTAATTGTCATTTTCTTATCTCTCATTTGTCTGATAAATTGACTCTATTTTAACCACATAAAGAAAAAAGAGAGATTATTTATTGTTTTCTCAAAATTCTACTTACATTATTTAATGTTTATGATAAAACATGAAAAAATATAATTATTTTTTATTAATATAATAAAAGTGACAAATAAAAATGAAAAAAAATATATGTTAAAAATAAATGACAAACAAAAATAAACAGAGAGAGTTACTTCGGTTGATGAGTATTGGTTGGAAAAAGTATTAATCTCTTCTAATTTAGAAATACTCCCACATTTAGCGACATTTTCTCGATAAAAAATTAGACCAAGAAATAAATTTTTTAGTCCTAATTAAACAACAAAATTAATATGGAGACTACTTATTATAAAAATAATTCAAAAATCTATATGAATTATTTTACCATGATAAATCGTGAATTATTCCACTAGTTACACTCTTTCTGAATTAAGTTCTTTAATTTGATTCCTTTCGTTTCATCAATCAATTTATATTCGTTAAAGAAATGAGAATTTATAAATACCTTAATTTGCAGGTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATGAAGTAATGCAAATTATTTCATTTTAAAAAATAATAATAATTATATATATGTTCTAACATAGTAGTACACAGATTAAAGTTGATCGATACCTAAAATCGTTTAATTAATTATGTAGGTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAGGTAATTAACTAAAATACTTTATCTGTTTATTTTTACTTGTCCACTGTACTATTTTGATATTATTTGTACAATTGTATTGAGTGATTTTCGATTTCCTATGTACAGTTATTGTGTAACGAATGGGCTAAAAAA</genome_strand>
        <mrna_strand>AATGGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAG.........................................................................................................GTATGCAATAGTGACCGGAGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAAAACAAAATTTGGAAGGCTCGATATTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATGAA.................................................................................................................GTTGAGGACAAAAGTGTTGTGGAGAAATCAATTGAAAGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCCAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAGTTGAAG.........................................................................................................TTATTGTGTAACGAATGGGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594656" ref_strand="+" ref_description="SGN-E594656 [37912]">
      <seq>aaatcctcgaggctatcgactagttggagatgtttgttatgaggaggccatcaaggttgcttcagctattactcctgttcctggaggagttgggcccatgactatagcaatgcttctctccaatactttgttatcagcaaagcgaatcaacaacttcaagtgagattttgaagttcagtagtctaaccaggtgggccatattgttgagcttcccagctgtctttcctgtctcttagtcagcatgtatctgcctttatgagcttgtagcatgaaaactaactttagggaacaaagcatctaaacgatcttcaactcgagggacaatgataagctacctaaaaggtgcagtcaaagctggataccatgacatactttatagagtttggtagggaataagggtctgatggcggaaatcaagtcttaggtgaaacaagctcgcccactatggtttgattgcacattttaaacccttttttcctttcggaatgttgtcttcagttgttgagtggtctgactgaagctcttgtactcagaacaattgtatatgtgctattagctgtatggtttgtccaacatatatgcagattcatatcatttgagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="64567" stop="63363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64267" g_stop="63659" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E594656" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64267" e_stop="63659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGA-TTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAA-GGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCC-TTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAGGTTTGTTCAACATATATGCAGATTCATATCAGTTGAGTATAACATGAT</genome_strand>
        <mrna_strand>AAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAGCGAATCAACAACTTCAAGTGAGATTTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCCCAGCTGTCTTTCCTGTCTCTTAGTCAGCATGTATCTGCCTTTATGAGCTTGTAGCATG-AAAACTAACTTTAGGGAACAAAGCATCTAAACGATCTTCAACTCGAGGGACAATGATAAGCTACCTAAAAGGTGCAGTCAAAGCTGGATACCATGACATACTTTATAGAGTTTGGTAGGGAATAAGGGTCTGATGGCGGAAATCAAGTCTTAGGTGAAACAAGCTCGCCCACTATGGTTTGATTGCACATTTTAAACCCTTTTTTCCTTTCGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGACTGAAGCTCTTGTACTCAGAACAATTGTATATGTGCTATTAGCTGTATGGTTTGTCCAACATATATGCAGATTCATATCATTTGAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745942" ref_strand="+" ref_description="SGN-E745942 [GI|47105460]">
      <seq>gacggcaaaaaatcttaaaccccaaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcagaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgcagccgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcattggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcagttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttatcccctgtacaccaaaaggatgcattgagcttcttcatcggtacaatgtggaaattaaggggaaaaaagcggttgtcattggcaggagcaatatagttggaatgcctgctgccctgctgctgcagagggaagatgccaccgtcagcatagttcattccagaaccactaacccagaggagatcacaagagaagcagatatcataatcgctgctgtagggaaaccaaatatggttagaggtagctggatcaagcctggggcagtaattattgatgtcgggattaatcctgtggaggatgctacaaatcctcgaggctatcgactagttggagatgtttgttatgaggaggccatcaaggttgcttcagctattactcctgttcctggaggagttgggcccatgactatagcaatgcttctctccaatactttgttatcagcaaaacgaattaataacttcaagtgagatttgaagttcagtagtctaaccaggtgggccatattgttgagcttctcagctgtctttcctgtcccttagtcagcatgtatctgctgttatgaacttgtagcgtgaaaaactaactttagggaacaaagcatctaaacaatcttcaactcgagggacaatgataagctacctaagaggtgcagtcaaagctggatgccatgacattctttatagagtttggtagggaataaggtctgatggcggaaatcaagtctgaggtgaaacaagctcgcccaccatggtttgattgcacattttaaaccctttttccttttggaatgttgtcttcagttgttgagtggtctgtctgaagctcttgtactcggaacaattgtatatgtgctattagctgtaaggtttgttcaacatatatgcagattcatatcagttgagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67352" stop="63363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67053" g_stop="66759" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="621" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64875" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="858" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64731" g_stop="64564" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1026" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64563" i_stop="64276" i_length="288">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64275" g_stop="63669" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1633" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1634" polyA_stop="1651"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E745942" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1633</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67053" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64875"/>
          <exon e_start="64731" e_stop="64564"/>
          <exon e_start="64275" e_stop="63669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGCAAAAAATCTTAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAGGTGTGAAAGCTATATACTGTTTTCTTCTAATTGTCATCCTCGTGATTAAGCAGTAATTTGTGTCTCATTGTGCCTTTCCCAGCATGCTCTTCAAATAAATATGATAGAATTGCTAGTTCAAGGACCACTTAAAGAATGTAGTAATTATTATTTTTTGTTTAACAATATTCCAATCACAGTGATACATCCCCAAAAGAAAGAAAAAACAGAAACAATTTCCGTATAGTGGAATGCATGTTTGCCTTCTGATTTACCAAGTTGATTGCTGATTTTTATTCTGTCCAACAGGATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAAGGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCCTTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAGGTTTGTTCAACATATATGCAGATTCATATCAGTTGAGT</genome_strand>
        <mrna_strand>GACGGCAAAAAATCTTAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAG...............................................................................................................................................AGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAG................................................................................................................................................................................................................................................................................................GATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAAGGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCCTTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAGGTTTGTTCAACATATATGCAGATTCATATCAGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416680" ref_strand="+" ref_description="SGN-E416680 [STM-23-O2]">
      <seq>caaatgatatgaatctgcatatatgttggacaaaccatacagctaatagcacatatacaattgttctgagtacaagagcttcagtcagaccactcaacaactgaagacaacattccgaaaggaaaaaagggtttaaatgtgcaatcaaaccatagtgggcgagcttgtttcacctaagactagatttccgccatcagaccttattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="63372" stop="64178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63672" g_stop="63878" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E416680" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63672" e_stop="63878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGATATGAATCTGCATATATGTTGAACAAACCTTACAGCTAATAGCACATATACAATTGTTCCGAGTACAAGAGCTTCAGACAGACCACTCAACAACTGAAGACAACATTCCAAAAGGAAAAAGGGTTTAAAATGTGCAATCAAACCATGGTGGGCGAGCTTGTTTCACCTCAGACTTGATTTCCGCCATCAGACCTTATTCC</genome_strand>
        <mrna_strand>CAAATGATATGAATCTGCATATATGTTGGACAAACCATACAGCTAATAGCACATATACAATTGTTCTGAGTACAAGAGCTTCAGTCAGACCACTCAACAACTGAAGACAACATTCCGAAAGGAAAAAAGGGTTTAAATGTGCAATCAAACCATAGTGGGCGAGCTTGTTTCACCTAAGACTAGATTTCCGCCATCAGACCTTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401843" ref_strand="+" ref_description="SGN-E401843 [PPC-5-D9]">
      <seq>ctgcttatatgttggacaaaccatacagctaatagcacctatacaattgttctgagtacaagagcttcagtcagaccactcaataactgaagacaacattccgaaaggaaaaaagggtttaaaatgtccaatcaaaccatagtgggcgagcttgtttcacctaagacttgatttccgccatcaaaccttattccctaccaaactctataaagtatgtcatggtatccagctttgactgcaccttttgactgaagacaacattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="63386" stop="64230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63686" g_stop="63927" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E401843" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63686" e_stop="63927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATATATGTTGAACAAACCTTACAGCTAATAGCACATATACAATTGTTCCGAGTACAAGAGCTTCAGACAGACCACTCAACAACTGAAGACAACATTCCAAAAGG-AAAAAGGGTTTAAAATGTGCAATCAAACCATGGTGGGCGAGCTTGTTTCACCTCAGACTTGATTTCCGCCATCAGACCTTATTCCCTACCAAACTCTATAAAGAATGTCATGGCATCCAGCTTTGACTGCACCT</genome_strand>
        <mrna_strand>CTGCTTATATGTTGGACAAACCATACAGCTAATAGCACCTATACAATTGTTCTGAGTACAAGAGCTTCAGTCAGACCACTCAATAACTGAAGACAACATTCCGAAAGGAAAAAAGGGTTTAAAATGTCCAATCAAACCATAGTGGGCGAGCTTGTTTCACCTAAGACTTGATTTCCGCCATCAAACCTTATTCCCTACCAAACTCTATAAAGTATGTCATGGTATCCAGCTTTGACTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432465" ref_strand="+" ref_description="SGN-E432465 [STM-57-G17]">
      <seq>ctgcttatatgttggacaaaccatacagctaatagcacctatacaattgttctgagtacaagagcttcagtcagaccactcaataactgaagacaacattccgaaaggaaaaaagggtttaaaatgtccaatcaaaccatagtgggcgagcttgtttcacctaagacttgatttccgccatcaaaccttattccctaccaaactctataaagtatgtcatggtatccagctttgactgcaccttttgactgaagacaacattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="63386" stop="64230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63686" g_stop="63927" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E432465" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63686" e_stop="63927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATATATGTTGAACAAACCTTACAGCTAATAGCACATATACAATTGTTCCGAGTACAAGAGCTTCAGACAGACCACTCAACAACTGAAGACAACATTCCAAAAGG-AAAAAGGGTTTAAAATGTGCAATCAAACCATGGTGGGCGAGCTTGTTTCACCTCAGACTTGATTTCCGCCATCAGACCTTATTCCCTACCAAACTCTATAAAGAATGTCATGGCATCCAGCTTTGACTGCACCT</genome_strand>
        <mrna_strand>CTGCTTATATGTTGGACAAACCATACAGCTAATAGCACCTATACAATTGTTCTGAGTACAAGAGCTTCAGTCAGACCACTCAATAACTGAAGACAACATTCCGAAAGGAAAAAAGGGTTTAAAATGTCCAATCAAACCATAGTGGGCGAGCTTGTTTCACCTAAGACTTGATTTCCGCCATCAAACCTTATTCCCTACCAAACTCTATAAAGTATGTCATGGTATCCAGCTTTGACTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539788" ref_strand="+" ref_description="SGN-E539788 [TUS-59-L17](-)">
      <seq>aggagcaatatagttggaatgcctgctgccctgctgctgcagagggaagatgccaccgtcagcatagttcattccagaaccactaacccagaggagatcacaagagaagcagatatcataatcgctgctgtagggaaaccaaatatggttagaggtagctggatcaagcctggggcagtaattattgatgtcgggattaatcctgtggaggatgctacaaatcctcgaggctatcgactagttggagatgtttgttatgaggaggccatcaaggttgcttcagctattactcctgttcctggaggagttgggcccatgactatagcaatgcttctctccaatactttgttatcagcaaaacgaattaataacttcaagtgagatttgaagttcagtagtctaaccaggtgggccatattgttgagcttctcagctgtctttcctgtcccttagtcagcatgtatctgctgttatgaacttgtagcgtgaaaaactaactttagggaacaaagcatctaaacaatcttcaactcgagggacaatgataagctacctaagaggtgcagtcaaagctggatgccatgacattctttatagagtttggtagggaataaggtctgatggcggaaatcaagtctgaggtgaaacaagctcgcccaccatggtttgattgcacattttaaaccctttttccttttggaatgttgtcttcagttgttgagtggtctgtctgaagctcttgtactcggaacaattgtatatgtgctattagctgtaaggtttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="65216" stop="63391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64916" g_stop="64875" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64731" g_stop="64564" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="210" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64563" i_stop="64276" i_length="288">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64275" g_stop="63707" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="779" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="798"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E539788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64916" e_stop="64875"/>
          <exon e_start="64731" e_stop="64564"/>
          <exon e_start="64275" e_stop="63707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAGGTGTGAAAGCTATATACTGTTTTCTTCTAATTGTCATCCTCGTGATTAAGCAGTAATTTGTGTCTCATTGTGCCTTTCCCAGCATGCTCTTCAAATAAATATGATAGAATTGCTAGTTCAAGGACCACTTAAAGAATGTAGTAATTATTATTTTTTGTTTAACAATATTCCAATCACAGTGATACATCCCCAAAAGAAAGAAAAAACAGAAACAATTTCCGTATAGTGGAATGCATGTTTGCCTTCTGATTTACCAAGTTGATTGCTGATTTTTATTCTGTCCAACAGGATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAAGGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCCTTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAG</genome_strand>
        <mrna_strand>AGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAG...............................................................................................................................................AGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAG................................................................................................................................................................................................................................................................................................GATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAAGGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCCTTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265504" ref_strand="+" ref_description="SGN-E265504 [cLEI-14-G24]">
      <seq>aagagaagcagatatcataatcgctgctgtagggaaaccaaatatggttagaggtagctggatcaagcctggggcagtaattattgatgtcgggattaatcctgtggaggatgctacaaatcctcgaggctatcgactagttggagatgtttgttatgaggaggccatcaaggttgcttcagctattactcctgttcctggaggagttgggcccatgactatagcaatgcttctctccaatactttgttatcagcaaaacgaattaataacttcaagtgagatttgaagttcagtagtctaaccaggtgggccatattgttgagcttctcagctgtctttcctgtcccttagtcagcatgtatctgctgttatgaacttgtagcgtgaaaaactaactttagggaacaaagcatctaaacaatcttcaactcgagggacaatgataagctacctaagaggtgcagtcaaagctggatgccatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="64972" stop="63598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64672" g_stop="64564" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64563" i_stop="64276" i_length="288">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64275" g_stop="63898" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="487" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E265504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64672" e_stop="64564"/>
          <exon e_start="64275" e_stop="63898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAGGTGTGAAAGCTATATACTGTTTTCTTCTAATTGTCATCCTCGTGATTAAGCAGTAATTTGTGTCTCATTGTGCCTTTCCCAGCATGCTCTTCAAATAAATATGATAGAATTGCTAGTTCAAGGACCACTTAAAGAATGTAGTAATTATTATTTTTTGTTTAACAATATTCCAATCACAGTGATACATCCCCAAAAGAAAGAAAAAACAGAAACAATTTCCGTATAGTGGAATGCATGTTTGCCTTCTGATTTACCAAGTTGATTGCTGATTTTTATTCTGTCCAACAGGATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACAT</genome_strand>
        <mrna_strand>AAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAG................................................................................................................................................................................................................................................................................................GATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269183" ref_strand="+" ref_description="SGN-E269183 [cLEI-16-D19]">
      <seq>atcctatggttgatggaattcttgttcagctaccattgccttcgcatatggatgaagagaaaatcctacatgctgattgcgttgaaaaggatgtggatggattccacccactagatattggccatcttgcgatgccaggtatagagcccttatgtatccgctgtacaccaaaatgatgcattgagcttcttcatcgatacaatgtggaaattaaggggaaaaaagcggatgtcattggcaggagcaatatagttggaatgcctgcgtgccctgctgctgcagaaggaagatgccaccgtgagcatagttcattccataaccactaacccagatgagatcacaagagaagcagatatcatgatcgctgctgtagggaaacctaatatggttagaggtagctggatcaagcctggggcagtagattattgatgacgggattaatcctgtggaggatgctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="66210" stop="64256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65910" g_stop="65867" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65111" g_stop="64875" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="282" r_length="238" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64731" g_stop="64564" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="451" r_length="169" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64563" i_stop="64276" i_length="288">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64275" g_stop="64265" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="462" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E269183" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65910" e_stop="65867"/>
          <exon e_start="65111" e_stop="64875"/>
          <exon e_start="64731" e_stop="64564"/>
          <exon e_start="64275" e_stop="64265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGC-TGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTA-ATTATTGATGTCGGGATTAATCCTGTGGAGGTGTGAAAGCTATATACTGTTTTCTTCTAATTGTCATCCTCGTGATTAAGCAGTAATTTGTGTCTCATTGTGCCTTTCCCAGCATGCTCTTCAAATAAATATGATAGAATTGCTAGTTCAAGGACCACTTAAAGAATGTAGTAATTATTATTTTTTGTTTAACAATATTCCAATCACAGTGATACATCCCCAAAAGAAAGAAAAAACAGAAACAATTTCCGTATAGTGGAATGCATGTTTGCCTTCTGATTTACCAAGTTGATTGCTGATTTTTATTCTGTCCAACAGGATGCTACAAA</genome_strand>
        <mrna_strand>ATCCTATGGTTGATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAAGAGAAAATCCTACATGCTGATTGCGTTGAAAAGGATGTGGATGGATTCCACCCACTAGATATTGGCCATCTTGCGATGCCAGGTATAGAGCCCTTATGTATCCGCTGTACACCAAAATGATGCATTGAGCTTCTTCATCGATACAATGTGGAAATTAAGGGGAAAAAAGCGGATGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCGTGCCCTGCTGCTGCAG...............................................................................................................................................AAGGAAGATGCCACCGTGAGCATAGTTCATTCCATAACCACTAACCCAGATGAGATCACAAGAGAAGCAGATATCATGATCGCTGCTGTAGGGAAACCTAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAGATTATTGATGACGGGATTAATCCTGTGGAG................................................................................................................................................................................................................................................................................................GATGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727692" ref_strand="+" ref_description="SGN-E727692 [LA15BH03]">
      <seq>cgacgctaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgcagccgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcagttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttatcccctgtacaccaaaaggatgcattgagcttcttcatcggtacaatgtggaaattaaggggaaaaaagcggttgtcattggcaggagcaatatagttggaatgcctgctgccctgctgctgcagagggaagatgccaccgtcagcatagttcattccagaaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67322" stop="64390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67030" g_stop="66759" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="597" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64875" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="834" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64731" g_stop="64690" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="876" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E727692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67030" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64875"/>
          <exon e_start="64731" e_stop="64690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACT</genome_strand>
        <mrna_strand>CGACGCTAAAA-CGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAG...............................................................................................................................................AGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486706" ref_strand="+" ref_description="SGN-E486706 [cSTE-23-A23]">
      <seq>tctttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctctctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttgtcccctgtacacccaaaggatgcattgagcttcttcaccggtacaatgtggaaatcaaggggaaaaaggcggttgtcattggcaggagcaatatagttggaatgcctgctgccttgctgctgcagagggaagatgccaccgtcagcattgttcattccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67182" stop="64394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66884" g_stop="66759" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="452" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64875" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="689" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64731" g_stop="64694" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="727" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E486706" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66884" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64875"/>
          <exon e_start="64731" e_stop="64694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAAC</genome_strand>
        <mrna_strand>TCTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCTCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTGTCCCCTGTACACCCAAAGGATGCATTGAGCTTCTTCACCGGTACAATGTGGAAATCAAGGGGAAAAAGGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCTTGCTGCTGCAG...............................................................................................................................................AGGGAAGATGCCACCGTCAGCATTGTTCATTCCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269424" ref_strand="+" ref_description="SGN-E269424 [cLEM-2-K9]">
      <seq>ttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcagttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttatcccctgtacaccaaaaggatgcattgagcttcttcatcggtacaatgtggaaattaaggggaaaaaagcggttgtcattggcaggagcaatatagttggaatgcctgctgccctgctgctgcagagggaagatgccaccgtcagcatagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="66432" stop="64403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66132" g_stop="65867" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65111" g_stop="64875" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="503" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64731" g_stop="64703" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="532" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E269424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66132" e_stop="65867"/>
          <exon e_start="65111" e_stop="64875"/>
          <exon e_start="64731" e_stop="64703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAGGTAATAGTCTAATAAACAATGATCTTATTCTTCTTGTGATAGAGCCTTTTTTTCTGATAGCATTGTATTGAGCTCTTCATCTCTTATAATTTTCTGTTTATTGCTTTTGTTCTTTCCAATGTTTCTTCCTATTCTTATATTAGAGGGAAGATGCCACCGTCAGCATAGTTCA</genome_strand>
        <mrna_strand>TTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAG...............................................................................................................................................AGGGAAGATGCCACCGTCAGCATAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454564" ref_strand="+" ref_description="SGN-E454564 [cSTS-23-B6]">
      <seq>tcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgccgcagctcggtttttaccacttcttggcccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcattactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttgtcccctgtacacccaaaggatgcattgagcttcttcaccggtacaatgtggaaatcaaggggaaaaaggcggttgtcattggcaggagcaatatagttggaatgcctgctgccttgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67288" stop="64577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66988" g_stop="66759" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="553" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64877" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="788" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E454564" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66988" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGC</genome_strand>
        <mrna_strand>TCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCCGCAGCTCGGTTTTTACCACTTCTTGGCCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTGTCCCCTGTACACCCAAAGGATGCATTGAGCTTCTTCACCGGTACAATGTGGAAATCAAGGGGAAAAAGGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCTTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478221" ref_strand="+" ref_description="SGN-E478221 [cSTD-3-P7]">
      <seq>cagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttgtcccctgtacacccaaaggatgcattgagcttcttcaccggtacaatgtggaaatcaaggggaaaaaggcggttgtcattggcaggagcaatatagttggaatgcctgctgccttgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="66430" stop="64577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66131" g_stop="65867" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65111" g_stop="64877" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="500" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E478221" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66131" e_stop="65867"/>
          <exon e_start="65111" e_stop="64877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGC</genome_strand>
        <mrna_strand>CAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTGTCCCCTGTACACCCAAAGGATGCATTGAGCTTCTTCACCGGTACAATGTGGAAATCAAGGGGAAAAAGGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCTTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539790" ref_strand="+" ref_description="SGN-E539790 [TUS-59-L17]">
      <seq>aaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcagaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgcagccgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcattggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcggttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagagggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttatcccctgtacaccaaaaggatgcattgagctttctcatcggtacaatgtggaaattaaggggaaaaaagcggttgtcattggcaggagcaatatagttggaatgcctgctgccctgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67321" stop="64578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="66759" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="589" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64878" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="823" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E539790" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTG</genome_strand>
        <mrna_strand>AAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCGGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAGGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTTCTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417946" ref_strand="+" ref_description="SGN-E417946 [STM-26-B13]">
      <seq>tgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgccgcagctcggtttttaccacttcttggcccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcattactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttgtcccctgtacacccaaaggatgcattgagctttctcaccgggtacatgtggaaatcaaggggaaaaaggcgttgtcattggcaggagcaatatagttggaatgcctgctgccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67315" stop="64582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67015" g_stop="66759" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="580" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64882" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="809" r_length="229" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E417946" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67015" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCT</genome_strand>
        <mrna_strand>TGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCCGCAGCTCGGTTTTTACCACTTCTTGGCCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTGTCCCCTGTACACCCAAAGGATGCATTGAGCTTTCTCACCGGGTACATGTGGAAATCAAGGGGAAAAAGGC-GTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727945" ref_strand="+" ref_description="SGN-E727945 [LA16AH07]">
      <seq>tcctctttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgcagccgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcagttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtagagagcccttatttatcccctgtacaccaaaaggatgcattgagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67282" stop="64666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66982" g_stop="66759" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="551" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64966" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="697" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E727945" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66982" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATC-TTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCT</genome_strand>
        <mrna_strand>TCCTCTTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483857" ref_strand="+" ref_description="SGN-E483857 [cSTE-11-M13]">
      <seq>taaaaccccaaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaagagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgcgaggtanagagcccttatttgtcccctgtacacccaaaggatgcattgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67339" stop="64669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67039" g_stop="66759" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="604" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="64969" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="747" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E483857" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67039" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="64969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCT</genome_strand>
        <mrna_strand>TAAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAAGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTANAGAGCCCTTATTTGTCCCCTGTACACCCAAAGGATGCATTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482869" ref_strand="+" ref_description="SGN-E482869 [cSTE-5-J22]">
      <seq>aaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcgttttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattggccagcttgcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67330" stop="64721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67030" g_stop="66759" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="595" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65021" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="686" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E482869" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67030" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGC</genome_strand>
        <mrna_strand>AAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGTTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452413" ref_strand="+" ref_description="SGN-E452413 [cSTS-16-B10]">
      <seq>aaactctaaaaccccaaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67345" stop="64735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67045" g_stop="66759" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="610" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65035" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="687" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E452413" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67045" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGG</genome_strand>
        <mrna_strand>AAACTCTAAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482833" ref_strand="+" ref_description="SGN-E482833 [cSTE-5-B24]">
      <seq>aaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcgttttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgangagaaaatcctacatgctgtttgcattgagaaggatgtggatggattccacccactaaatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67330" stop="64735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67030" g_stop="66759" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="595" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65035" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="672" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E482833" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67030" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGG</genome_strand>
        <mrna_strand>AAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGTTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGANGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265628" ref_strand="+" ref_description="SGN-E265628 [cLEI-14-F15]">
      <seq>ccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcattggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttgttcctggccttgcagttatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaggaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattgccttcgcatatggatgaggagaaaatcctacatgctgtttgcattgagaaagatgtggatggattccacccactaaatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67164" stop="64736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66864" g_stop="66759" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="432" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65036" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="508" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E265628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66864" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTG</genome_strand>
        <mrna_strand>CCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAAGATGTGGATGGATTCCACCCACTAAATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482818" ref_strand="+" ref_description="SGN-E482818 [cSTE-5-O6]">
      <seq>aaccccaaacacaaaaaacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgaatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatgnttcatggaattcttgttcagctaccattaccttcgcatatggatgaagagaaaatcctacatgctgtttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67336" stop="64772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67036" g_stop="66759" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="602" r_length="326" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65072" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="642" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E482818" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67036" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATG-ATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTG</genome_strand>
        <mrna_strand>AACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGAATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGNTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAAGAGAAAATCCTACATGCTGTTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447326" ref_strand="+" ref_description="SGN-E447326 [cSTA-26-E9]">
      <seq>caagcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgccgcagctcggtttttaccacttcttggcccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcattactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatgatcctatggttcatggaattcttgttcagctaccattaccttcgcatatggatgaggagaaaatcctacatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67313" stop="64781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67013" g_stop="66759" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65867" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="578" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65111" g_stop="65081" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="609" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E447326" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67013" e_stop="66759"/>
          <exon e_start="66192" e_stop="65867"/>
          <exon e_start="65111" e_stop="65081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCGGTATGCTACTAAACCTTGTTGTTTTTTATTGCTGAATTTTCATAGAGTTAAGAATGTTTAACGTGTGACTTTATCTGGATTAGTTTTATCCAAGATGGATATGAATGAGTTATATTCCCAGAATCATGTCTAAATTGTTACTATTGGTTGTTGGATCTCCCTTGTCATATTTTTGTTACTGTTGAATGAATTGGATCTTAAGAGAGAGAAACTACTGGTCTATATCGGTTCAGTTTATCAGATAGTACAACATGACATCATTTGTGGTTGCTATTCAACAACATACCCCATATAGTCCAACAAGTGTGGTTTGGGGAGGGTGGGTGTACGCAGACCTTACCTAACTGTTGTCGTATAGAGAGGTTGTTTTCGATAGACCCCAGCTGAAGAAAATCATTTTTAAGAACATGATTTGAAAGGAATGCAAGAGTAAAAAGATATGATGCTTATATTGAGAAAGACAAGTACTGTCTCGAAAAATATTAAGAGATAACCAAAGTTAATCAGATTGTTAATTTGGTGCTTCATAAAGCCAATCACCAACAGATATGATCCCTTGAAGTAACAGTAGTCAAAGTTATCCGATCATGTTCCCTTATGATAAGAGAAAGTACTCTACTCAACTAGTGCTGTTGTTATGGATGAGTTTATAGATCAATGATATATCTCAAAGCTATTCCACTTCTGATAGAGTTGATATCTTTCTAGACCTTTATCTTCTAATTTGAATTGCGTCTTCATCAACTTTTGATCAGCATATGGATGAGGAGAAAATCCTACATGCTG</genome_strand>
        <mrna_strand>CAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCCGCAGCTCGGTTTTTACCACTTCTTGGCCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTACCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGATGAGGAGAAAATCCTACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439206" ref_strand="+" ref_description="SGN-E439206 [cSTA-11-G2]">
      <seq>cgaggcaaacaccaaaaaacggtgcaagccatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcgttttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaagctgctgggatcaaatcctatgaagtgtgtttgcctgagaactcaacagaagaagaagttctcaagtatatttcagacttcaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67331" stop="65610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67036" g_stop="66759" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65910" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="560" r_length="283" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E439206" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67036" e_stop="66759"/>
          <exon e_start="66192" e_stop="65910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCAAACAC-AAAAAACGGTGCAAG-CATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGA</genome_strand>
        <mrna_strand>CGAGGCAAACACCAAAAAACGGTGCAAGCCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGTTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAGCTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAAGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284740" ref_strand="+" ref_description="SGN-E284740 [cLES-3-I7]">
      <seq>aacggtgcaagcatagggctgagacttagagctcaacttcatcttctttgtcagaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgcagccgcagctcggtttttaccacttcttgggccccaccaaattcgcttccgttcctctgtggctcccctttacaacccatctttccccagaaccatcatcactcgtccaacgttttcctcctcctccatcatcaccgctgcgatggctaatgaggcattggtaaaagtgattgatgggaaaaaagttgcaaaagatgttagagatgaaataaatgctgaaataactaggatgaaagattcgattggtgttggtcctggccttgcgggtatacttgttggggataggaaggattctgcaacttatgttcgcaacaagaaaaaagcttgtgaaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67320" stop="65693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="66759" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65993" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="462" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E284740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="66759"/>
          <exon e_start="66192" e_stop="65993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCT</genome_strand>
        <mrna_strand>AACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGGTCCTGGCCTTGCGGGTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416679" ref_strand="+" ref_description="SGN-E416679 [STM-23-O2]">
      <seq>gccgtcaacccgccgcttgcagctcgttttttacccaactttctttgggccccaccaaattcgcttccgttcctctcttggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagcttgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67191" stop="65699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66910" g_stop="66759" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="65998" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="351" r_length="195" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E416679" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66910" e_stop="66759"/>
          <exon e_start="66192" e_stop="65998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTA-CC-ACTT-C-TTGGGCCCCACCAAATTCGCTTCCGTTCCTCT-GTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAA</genome_strand>
        <mrna_strand>GCCGTCAACC-CGCCGCTTGCAGCTCGTTTTTTACCCAACTTTCTTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438975" ref_strand="+" ref_description="SGN-E438975 [cSTA-10-O2]">
      <seq>gcatagggctgagacttagagctcaacttcatcttctttgtcggaaaatggcgtcatctccgataacaatgatgaagatgaagttaaacaactgctcaccgccgtcaaccgccgctgcagctcgttttttaccacttcttgggccccaccaaattcgcttccgttcctctctggctccctttcacaacccatcttttcccagaaccatcatcactcgtccaacgttttcctcttcctccatcatcactgctgcaatggctagtgaggcatcggtaaaagtgattgatgggaaaaaagttgcaaaagatgtcagagatgaaataaatgccgaaataactaggatgaaagattcgattggtgttgttcctggcctggcagttatacttgttggggataggaaagattctgcaacttatgttcgcaacaagaaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="67310" stop="65706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67010" g_stop="66759" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66192" g_stop="66006" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="436" r_length="187" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E438975" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67010" e_stop="66759"/>
          <exon e_start="66192" e_stop="66006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCGGTAAATTCTTTTACTTTGCAATTCCCAAGCTTTTAAGTTGCTTTGTAAGTATATCTTTGTATGGAATATGGATTTTAAAAAGGGTGAAGGTAGTATATTTTTTTTGGCGAATGAACTAGATATTGAGTAATTGACAATACATAAAATCTATGTTTTGAGTAAAGTTATAATATTGGCAAGCTGTTTTAGGCGTGATGTTAAGAATCTTTAGCTAGAAGATGACCAAACAAGGATTCAGAGATCTAAAATGGGATTAATTGATGGTATAGGTATTAAAAGTTCAGAGCTTTACTATAAAAACCATCTCTGTAAGCTGTTAAATTGGTCAGAGTGATATGTCTACAATTTTCTGAACTTCAGTATTCTTAAGTAAGTTGGTTGAGAATTTCGTGGACTTGAAGTGTTTGGTCCTTGGCTCGCAATTGGGACTTTTTCCTTTTAATGTAATTGTTTCACTCTGGATTTTTTCTTGCGTGTTCCCCAACTGTCTGGTTTTGTGGCATTGTTGGTTTGGTTTGACAGACCTACCTTTTAAGAATTTTTGAATTATTCGCCTTGCTGTGCAGCTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGC</genome_strand>
        <mrna_strand>GCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCGGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCG-C-C-GCTGCAGCTCGTTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTCTGGCTCCCTTTCACAACCCATCTTTTCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCTTCCTCCATCATCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGCTAGTGAGGCATCGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTCAGAGATGAAATAAATGCCGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTGGCAGTTATACTTGTTGGGGATAGGAAAGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605572" ref_strand="+" ref_description="SGN-E605572 [21495]">
      <seq>gaactgtttgggccttgaacaagtactttcccaatgtgaaaacatttgtacgtgctcatgatgtggatcatggccttaatttaagaaggctggagcaacagcggttgtgcccgagaccttggaaccaagcctacagttggccgctgctgtccttgcacaagctaagctgccaatgtcagagatagcagcaacaatcaatgagtttaggtcccgccacctctctgagcttactgagctatgtgaaactagcggaagttctctaggctatggtttttctcgtgtggtgagtaaagccaaagctcagccctcagactcttcagatgagaaccaagtcagtgaaggaacactagcaatatgatacccattagaagaaacaagaatctgcattgcttggacctacaacaaaaaacgaagggcaatagaagggatgatagtccttataagtgtatagtgtttttagttaacccccatttttaaaagaatgtacagaagtatagcaagcaagaagctatgcaggagagcaattttcttttatggcataaccactaggtgatagaccttttaattgctttggttcgaaaagtttagtttttgcatttcaggatataaggtcatccaggtagtttgcatcgatatagttgaatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="68992" stop="67213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68692" g_stop="68589" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68361" g_stop="68305" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="160" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68103" g_stop="68029" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="235" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67916" g_stop="67513" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="648" r_length="413" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E605572" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68692" e_stop="68589"/>
          <exon e_start="68361" e_stop="68305"/>
          <exon e_start="68103" e_stop="68029"/>
          <exon e_start="67916" e_stop="67513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCGGTATCTTTCTTATTCTAATGTTTGCTATTGATCTTTTTGTTGGGAACTTGTTCATATTGGTTGCACTTAGGATTCTCTGGATAAAATCAGGATTCTGAGCTTTGAAATATTTATACATTTGCTGTTGTATTAGCATTCTGCTACCGTGACATTTCTAGTTGTAACATATTATGCATGAAAGAGGAAAAGGTGGATAAATGATGAACAATGGATAAATGTTTTTACAGGTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAAGTAAGTAGATTTGATAGATTGGACAGAGATCTGTTCTACTGTATACTTGAGTATTCTTGATGGGTTGTTGGATGTTCTGATGCAATAATCTAGCTGCACGCTACCTTTGCATCTCGATCTCCTTGTAGTTGGCTTTTGACATTCTTCAACCATTCCTTGAGTGTAGCAAATAAAATTCTGAGTATATATTATATCTTCTAGGCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAGGTAAATTATACTTGCACTACTTGTCTTTGGTTTTGGAGTGTTGCTAGAGTTTGCATCCGTTTCAGATTTTGTTAGATATTTAATACAAATAATACTTGATTTTGTTTTGCAGCTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAAC-CAAAACGAA-GG-----G-A---A-GATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAA-CCCCATTTTTAAAAGAATGTACAGAATTATAGCAAGCAAGAAGCTATGCAGGAGAGCAATTTTTTTTTATGGCATAATAACCACTAGGTGATAGACCTTTTAATTGCTTTGGTTCGAAAAGTTGTTGTTTTTGCATTTCAGGATATAAGGTCATCCAGGTAGTTTGCATCGATATAGTTGAATGTAT</genome_strand>
        <mrna_strand>GAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTA-AGAAGGCTGGAGCAACAGCG...................................................................................................................................................................................................................................GTTGTGCCCGAGACCTTGGAACCAAGCCTACAGTTGGCCGCTGCTGTCCTTGCACAA.........................................................................................................................................................................................................GCTAAGCTGCCAATGTCAGAGATAGCAGCAACAATCAATGAGTTTAGGTCCCGCCACCTCTCTGAGCTTACTGAG................................................................................................................CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTGGTGAGTAAAGCCAAAGCTCAGCCCTCAGACTCTTCAGATGAGAACCAAGTCAGTGAAGGAACACTAGCAATATGATACCCATTAGAAGAAACAAGAATCTGCATTGCTTGGACCTACAACAAAAAACGAAGGGCAATAGAAGGGATGATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAACCCCCATTTTTAAAAGAATGTACAGAAGTATAGCAAGCAAGAAGCTATGCAGGAGAGCAATTTTCTTTTATGGC---ATAACCACTAGGTGATAGACCTTTTAATTGCTTTGGTTCGAAAAGTT-TAGTTTTTGCATTTCAGGATATAAGGTCATCCAGGTAGTTTGCATCGATATAGTTGAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560507" ref_strand="+" ref_description="SGN-E560507 [20172]">
      <seq>gttgcgcttgatgtgcgaagtgagcgtgttgcagttggtcgtgcacttgaccttcctgtatactttggtgatgctggtagccgagaggttcttcataaagttggagctgaaagagcatgtgctgccgcgataacattagatactcctggtgcaaattacagaactgtttgggccttgaacaagtactttcccaatgtgaaaacatttgtacgtgctcatgatgtggatcatggccttaatttagagaaggctggagcaacagcggttgtgcccgagaccttggaaccaagcctacagttggccgctgctgtccttgcacaagctaagctgccaatgtcagagatagcagcaacaatcaatgagtttaggtcccgccacctctctgagcttactgagctatgtgaaactagcggaagttctctaggctatggtttttctcgtgtggtgagtaaagccaaagctcagccctcagactcttcagatgagaaccaagtcagtgaaggaacactagcaatatgatacccattagaagaaacaagaatctgcattgcttggacctacaacaaaaaacgaagggcaatagaagggatgatagtccttataagtgtatagtgtttttagttaacccccatttttaaaagaatgtacagaagtatagcaagcaagaagctatgcagggagagcaattttcttttatggcataaccactaggtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="69206" stop="67317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68902" g_stop="68836" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="87" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68765" g_stop="68589" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="264" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68361" g_stop="68305" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="321" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68103" g_stop="68029" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67916" g_stop="67607" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="717" r_length="321" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E560507" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68902" e_stop="68836"/>
          <exon e_start="68765" e_stop="68589"/>
          <exon e_start="68361" e_stop="68305"/>
          <exon e_start="68103" e_stop="68029"/>
          <exon e_start="67916" e_stop="67607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGTGTTGCAGTTGGTCGTGCACTTGATCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAGGTAAAACAAATTTCTGAACTTACAAATATGGTGTGTATTTTATTTTGACATTCTGATTCTCGATTTCTAGGTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCGGTATCTTTCTTATTCTAATGTTTGCTATTGATCTTTTTGTTGGGAACTTGTTCATATTGGTTGCACTTAGGATTCTCTGGATAAAATCAGGATTCTGAGCTTTGAAATATTTATACATTTGCTGTTGTATTAGCATTCTGCTACCGTGACATTTCTAGTTGTAACATATTATGCATGAAAGAGGAAAAGGTGGATAAATGATGAACAATGGATAAATGTTTTTACAGGTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAAGTAAGTAGATTTGATAGATTGGACAGAGATCTGTTCTACTGTATACTTGAGTATTCTTGATGGGTTGTTGGATGTTCTGATGCAATAATCTAGCTGCACGCTACCTTTGCATCTCGATCTCCTTGTAGTTGGCTTTTGACATTCTTCAACCATTCCTTGAGTGTAGCAAATAAAATTCTGAGTATATATTATATCTTCTAGGCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAGGTAAATTATACTTGCACTACTTGTCTTTGGTTTTGGAGTGTTGCTAGAGTTTGCATCCGTTTCAGATTTTGTTAGATATTTAATACAAATAATACTTGATTTTGTTTTGCAGCTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAAC-CAAAACGAA-GG-----G-A---A-GATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAA-CCCCATTTTTAAAAGAATGTACAGAATTATAGCAAGCAAGAAGCTATGCA-GGAGAGCAATTTTTTTTTATGGCATAATAACCACTAGGTGATA</genome_strand>
        <mrna_strand>TGAGCGTGTTGCAGTTGGTCGTGCACTTGACCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAG......................................................................GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCGATAACATTAGATACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCG...................................................................................................................................................................................................................................GTTGTGCCCGAGACCTTGGAACCAAGCCTACAGTTGGCCGCTGCTGTCCTTGCACAA.........................................................................................................................................................................................................GCTAAGCTGCCAATGTCAGAGATAGCAGCAACAATCAATGAGTTTAGGTCCCGCCACCTCTCTGAGCTTACTGAG................................................................................................................CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTGGTGAGTAAAGCCAAAGCTCAGCCCTCAGACTCTTCAGATGAGAACCAAGTCAGTGAAGGAACACTAGCAATATGATACCCATTAGAAGAAACAAGAATCTGCATTGCTTGGACCTACAACAAAAAACGAAGGGCAATAGAAGGGATGATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAACCCCCATTTTTAAAAGAATGTACAGAAGTATAGCAAGCAAGAAGCTATGCAGGGAGAGCAATTTTCTTTTATGGC---ATAACCACTAGGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581412" ref_strand="+" ref_description="SGN-E581412 [6654]">
      <seq>ggagatgttgttcacttatattatccaattattatcatgatgctcgtcttaataaatgttttttataataaatgcagtgagcgtgttgcagttggtcgtgcacttgaccttcctgtatactttggtgatgctggtagccgagaggttcttcataaagttggagctgaaagagcatgtgctgccgcgataacattagatactcctggtgcaaattacagaactgtttgggccttgaacaagtactttcccaatgtgaaaacatttgtacgtgctcatgatgtggatcatggccttaatttagagaaggctggagcaacagcggttgtgcccgagaccttggaaccaagcctacagttggccgctgctgtccttgcacaagctaagctgccaatgtcagagatagcagcaacaatcaatgagtttaggtcccgccacctctctgagcttactgagctatgtgaaactagcggaagttctctaggctatggtttttctcgtgtggtgagtaaagccaaagctcagccctcagactcttcagatgagaaccaagtcagtgaaggaacactagcaatatgatacccattagaagaaacaagaatctgcattgcttggacctacaacaaaaaacgaagggcaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="69278" stop="67430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68979" g_stop="68836" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68765" g_stop="68589" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="321" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68361" g_stop="68305" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68103" g_stop="68029" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="453" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67916" g_stop="67735" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="636" r_length="183" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E581412" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68979" e_stop="68836"/>
          <exon e_start="68765" e_stop="68589"/>
          <exon e_start="68361" e_stop="68305"/>
          <exon e_start="68103" e_stop="68029"/>
          <exon e_start="67916" e_stop="67735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTGTTGTTCACTTGTATTATCCAATTATTATCATGATGCTTGTCTTAATAAATGTTTTTTACAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTTGATCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAGGTAAAACAAATTTCTGAACTTACAAATATGGTGTGTATTTTATTTTGACATTCTGATTCTCGATTTCTAGGTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCGGTATCTTTCTTATTCTAATGTTTGCTATTGATCTTTTTGTTGGGAACTTGTTCATATTGGTTGCACTTAGGATTCTCTGGATAAAATCAGGATTCTGAGCTTTGAAATATTTATACATTTGCTGTTGTATTAGCATTCTGCTACCGTGACATTTCTAGTTGTAACATATTATGCATGAAAGAGGAAAAGGTGGATAAATGATGAACAATGGATAAATGTTTTTACAGGTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAAGTAAGTAGATTTGATAGATTGGACAGAGATCTGTTCTACTGTATACTTGAGTATTCTTGATGGGTTGTTGGATGTTCTGATGCAATAATCTAGCTGCACGCTACCTTTGCATCTCGATCTCCTTGTAGTTGGCTTTTGACATTCTTCAACCATTCCTTGAGTGTAGCAAATAAAATTCTGAGTATATATTATATCTTCTAGGCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAGGTAAATTATACTTGCACTACTTGTCTTTGGTTTTGGAGTGTTGCTAGAGTTTGCATCCGTTTCAGATTTTGTTAGATATTTAATACAAATAATACTTGATTTTGTTTTGCAGCTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAAC-CAAAACGAAGGGAA</genome_strand>
        <mrna_strand>GGAGATGTTGTTCACTTATATTATCCAATTATTATCATGATGCTCGTCTTAATAAATGTTTTTTATAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTTGACCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAG......................................................................GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCGATAACATTAGATACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCG...................................................................................................................................................................................................................................GTTGTGCCCGAGACCTTGGAACCAAGCCTACAGTTGGCCGCTGCTGTCCTTGCACAA.........................................................................................................................................................................................................GCTAAGCTGCCAATGTCAGAGATAGCAGCAACAATCAATGAGTTTAGGTCCCGCCACCTCTCTGAGCTTACTGAG................................................................................................................CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTGGTGAGTAAAGCCAAAGCTCAGCCCTCAGACTCTTCAGATGAGAACCAAGTCAGTGAAGGAACACTAGCAATATGATACCCATTAGAAGAAACAAGAATCTGCATTGCTTGGACCTACAACAAAAAACGAAGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581413" ref_strand="+" ref_description="SGN-E581413 [6654]">
      <seq>attattatcatgatgctcgtcttaataaatgttttttataataaatgcagtgagcgtgttgcagttggtcgtgcacttggaccttcctggtatactttggtgatgctggtagccgagaggttcttcataaagttggagctgaaagagcatgtgctgccgcgataacattagatactcctggtgcaaattacagaactgtttgggccttgaacaagtactttcccaatgtgaaaacatttgtacgtgctcatgatgtggatcatggccttaatttagagaaggctggagcaacagcggttgtgcccgagaccttggaaccaagcctacagttggccgctgctgtccttgcacaagctaagctgccaatgtcagagatagcagcaacaatcaatgagtttaggtcccgccacctctctgagcttactgagctatgtgaaactagcggaagttctctaggctatggtttttctcgtgtggtgagtaaagccaaagctcagccctcagactcttcagatgagaaccaagtcagtgaaggaacactagcaatatgatacccattagaagaaacaagaatctgcattgcttggacctacaacaaaaaacgaagggcaatagaagggatgatagtccttataagtgtatagtgtttttaggttaaccccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="69252" stop="67391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68952" g_stop="68836" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68765" g_stop="68589" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="296" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68361" g_stop="68305" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="353" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68103" g_stop="68029" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67916" g_stop="67735" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="611" r_length="183" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E581413" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68952" e_stop="68836"/>
          <exon e_start="68765" e_stop="68589"/>
          <exon e_start="68361" e_stop="68305"/>
          <exon e_start="68103" e_stop="68029"/>
          <exon e_start="67916" e_stop="67735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTATCATGATGCTTGTCTTAATAAATGTTTTTTACAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTT-GATCTTCCT-GTATACTTTGGTGATGCTGGTAGCCGAGAGGTAAAACAAATTTCTGAACTTACAAATATGGTGTGTATTTTATTTTGACATTCTGATTCTCGATTTCTAGGTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCGGTATCTTTCTTATTCTAATGTTTGCTATTGATCTTTTTGTTGGGAACTTGTTCATATTGGTTGCACTTAGGATTCTCTGGATAAAATCAGGATTCTGAGCTTTGAAATATTTATACATTTGCTGTTGTATTAGCATTCTGCTACCGTGACATTTCTAGTTGTAACATATTATGCATGAAAGAGGAAAAGGTGGATAAATGATGAACAATGGATAAATGTTTTTACAGGTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAAGTAAGTAGATTTGATAGATTGGACAGAGATCTGTTCTACTGTATACTTGAGTATTCTTGATGGGTTGTTGGATGTTCTGATGCAATAATCTAGCTGCACGCTACCTTTGCATCTCGATCTCCTTGTAGTTGGCTTTTGACATTCTTCAACCATTCCTTGAGTGTAGCAAATAAAATTCTGAGTATATATTATATCTTCTAGGCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAGGTAAATTATACTTGCACTACTTGTCTTTGGTTTTGGAGTGTTGCTAGAGTTTGCATCCGTTTCAGATTTTGTTAGATATTTAATACAAATAATACTTGATTTTGTTTTGCAGCTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAAC-CAAAACGAAGGGAA</genome_strand>
        <mrna_strand>ATTATTATCATGATGCTCGTCTTAATAAATGTTTTTTATAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTTGGACCTTCCTGGTATACTTTGGTGATGCTGGTAGCCGAGAG......................................................................GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCGATAACATTAGATACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCG...................................................................................................................................................................................................................................GTTGTGCCCGAGACCTTGGAACCAAGCCTACAGTTGGCCGCTGCTGTCCTTGCACAA.........................................................................................................................................................................................................GCTAAGCTGCCAATGTCAGAGATAGCAGCAACAATCAATGAGTTTAGGTCCCGCCACCTCTCTGAGCTTACTGAG................................................................................................................CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTGGTGAGTAAAGCCAAAGCTCAGCCCTCAGACTCTTCAGATGAGAACCAAGTCAGTGAAGGAACACTAGCAATATGATACCCATTAGAAGAAACAAGAATCTGCATTGCTTGGACCTACAACAAAAAACGAAGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432133" ref_strand="+" ref_description="SGN-E432133 [STM-56-H23]">
      <seq>ggctttgggtgcatttttagctggtctgcttctggcagaaactgaattttcgttgcaagttgaatcagatattgctccatatcgtggactcctgctgggtctctttttcatgacggttggaatgtccattgatcccaagcttcttctttcaaactttccagtgattatgggctcattgggacttctattaggtggcaagactatcttggttgcattaattggtaaactgtttggtatttcaattgtatcggcagtaagagttggtctcctacttgctccgggtggagagtttgcctttgtagcctttggtgaagctgtcaatcagggaataatgtctcctgaattgtcatctctgctgtttcttgtggttggaatttcaatggccctcacaccatatctagctgctggaggtcaattaatagcatctcgttttgagctgcaagatgtgcgaagtttattgcctgatgaaagtgagacagatgatttgcaagatcatatcattatttgtggatttggtcgcgttggccagatcattgcccaacttctctccgagcgactgattccgtttgttgcgcttgatgtgcgaagtgagcgtgttgcagttggtcgtgcacttgaccttcctgtatactttggtgatgctggtagccgagaggttcttcataaagttggagctgaaagagcatgtgctgccgcgataacattagatactcctggtgcaaattacagaactgtttgggccttgaacaagtactttcccaatgtgaaaacatttgtacgtgctcatgatgtggatcatggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="73833" stop="68316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73533" g_stop="73419" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73418" i_stop="73065" i_length="354">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73064" g_stop="72855" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="325" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72854" i_stop="72406" i_length="449">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72405" g_stop="72256" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="475" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72255" i_stop="71216" i_length="1040">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71215" g_stop="71162" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="529" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71042" i_length="120">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71041" g_stop="70983" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="588" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70982" i_stop="68903" i_length="2080">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68902" g_stop="68836" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="655" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68765" g_stop="68616" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="805" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E432133" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73533" e_stop="73419"/>
          <exon e_start="73064" e_stop="72855"/>
          <exon e_start="72405" e_stop="72256"/>
          <exon e_start="71215" e_stop="71162"/>
          <exon e_start="71041" e_stop="70983"/>
          <exon e_start="68902" e_stop="68836"/>
          <exon e_start="68765" e_stop="68616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACGGTAGGTGATAATTATCTTGTTTGGTGTACAATGTGAATGCAGTTTTGTGATCCTACAACTAGTCAATTGGAGTTAAGGTAGGATAGGTCTTGGTAAGGTTCTATTTACATTTTAAAATTCTTGCTCTAGTGTTCTCGCCAGCTTGTAGAGCTTAACTGTCTCTCCTGAGTTGTTCTCATTGAATGACTGTACTTCTGCATTCTGTAATACCACTTCAGCTGTTTAGCAAACAAAATTTTATCTATTTTAATCAACTTTTATCAAGGCTGAAATGAGAGTTTTCCATGAATATATTTATTATGACTTTGGGTGCTTTGCGTCTTTACAACTGAACAAGTATTATCTGGCTTGCAGGTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTCGTAGCCTTTGGTGAAGCTGTCAATCAGGTTTATTTCTTTGATAGCTTTAACCTTTCACAAGCATTCATATCCGTCAATAAAATTCTTTTATTCCATTTTTTCTCCCTCTCTTGCGATGCTGTTTAAACAGCTTCTGTTTCTTTGTCACGGAATTGTGGACCTATTTTACAAATGACCTATGTACTGAAATCAAATATGGAGCTTATCTGATCCTGTTGTTGGGCAAGTGGAGACTAATTACCATCAATCCTTCCAGTTTCTATCTACGTCGGCCATCTTATATCTACTTACATTTCTCTTATTTCATGAGGCTTGTTCGCCCTTATCTACCCTTAAATAAATTTGAAGCTGCAACTTATCTGGACAGTGCAGTGCTAAGATCTATGAGGAATTTTGCCCCATGAAAAAAATACATCTTCTTAGGATAAGTATCAGCTTATTTAATGATTCCTCATGGTTTTACCTTTTTTTTCCAGGGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCTCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTGCAAGATGTGCGAAGTTTATTGCCTGATGAAAGTGAGGTACTGCCTCCTACTTTTGGTGGCACTAGTTTTCTTCTGTGGTTTTTAGCAAGGATGAAACTAATGAACCGTGTAGATGTTTGCCAATTCTTATATTTTGACACCTAAAGACGGATCACACTAAAGCCTCTGTTTTCGTTTCTAAAATTTTCGAACATTTAGTATATCCTACTTGATTACATCTTACTTCAAGCAAAATATAGCTGCCAAAAATTGGTGTATGTCACATGATTATTTGTTGTGGTGCTAGATTTGTGAATTGATCACAGAAAAATACAGTTAGACCTGTACTTCAGGTTCAGGACCTTGCAAGCTAACACAAAATAGTTTGGATTCAGGTTGTCAATAGTTACAGGGTATAAATTAAAGGGCTAAGGTTTAGGGGCACAGTACTGTTGTTAAGAAAACCATAACGTATTTCTGGAGACGAGGAAAGCTGGAATTTCGGTGCTAGAAAACATTTCCTTTTACTCCCCTTCCCTTTCCCAAATTTCTTCATCCCTGGCTGTCCTTCCCTTTCTCAAATTTCTCCTTTCAATGCATTTCTTTTATCCTGGTTCATCTCTCAAGTTTTGTGCTGTGCTTTTTGTTGCTACTTAAGTTTCGTGCCTCAGTGTTGTGGTACTGGTACTAAGCCTTCTGAACCCTTTTAGTTTCTCTGCCGTTTTACTTTTGGCACAATTTTATTTTTTGCAAGGAATTATTCTTGCCTTGAAAAGTAATCATCTATGGAATTATAGATCCATCTCATCTCTGATTAGGTTTCAACTGAACCTAATGCCTCACTTGGTTTTCCTTCTGACCTTATTTAACTCATTGCTGCTTTGCTCTATGTAAGTTGTTATCGTTAGCATTTATTATGGAGATCATTGGTATGAGAAGTAACAGATGTTTTGTTACCAAAGTTCATTACTTGAAGGACTACATCATGTAATGATATCTCTATGGATTATTACCTGCATAAATGTAAAGAAGATTTCACTGACTTCAATCAGTTGCTTAAAAGAATATAAATTAATAGTTCCCTTTTTCTTTTCCAGACAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGTCGCGTTGGCCAGGTTTTGCCCCCTGCTTTCATAAATTAGTTAATTGATCATTGGACAAATCATTGTCAAACTCTGGAAAAATGAAGCTATCCATCCCATCTTCTGTCTATTGAGTTAGTTTCATCTTAACAGATCATTGCCCAACTTCTCTCCGAGCGACTGATTCCATTTGTTGCACTTGATGTGCGAAGGTATGATTCTCTTTTTGCTCACATTGAACTGGTTTCAGTTCCTTGTGGGTTCAGTGAAGGTTAGAATTTTATATATTTTCACAACTTATCTCTCTACAGCACCTCCACTATCAACTACTCTTAAAAGCCACCAACCTTTATATCTAACCAGATGCAAGAAAATGGTTTTCCTTTATAAGATATTATACTGTAGAGAATGTTACCCCTGAGGAAACAGAGCCAGCGAGTAATTATTATCAAGTTTCATGACTTCCCAATGGTTTGTGTTATTCTCATTATATATGAGTCGTGATATTCTTTTGCAAGTTTTTTATGATATAGCATCTCAGTGCAATGTGGAAATAGATACTGAACAACTGAAAATCAGAAGATGCCTATTTTTTTTTAGAATTGTTATTTAAAAATATTTATTCTTTGCAATTTGTTATTCCCTCCAGCTTATATGACAATATTACTATTTTGGGACATTCCAAATTGTTTGATATGTTCCGTTATTACTCTATACAACTTTCAGGAATTCAAATACGTTTACTAGTTAAATTTTAAACCTTGATGTAATATTTTATCAATCAAACTAATTTTCTGCCCACTTGACTATTTTGTTAAAATACTCAAGTAAAAATGACATCTTACCTCTACCCCACAAAGGTAGCGTTTGCGTACATCCTACTCTCCCTAGGCTCTACTTATGGGATTACATCGGGTATGTTGTTGTTACTCATGTAAAAATGACTTGTTAAACTTGGTGTCCTATCAGACATCATTATACAAAATGAGGTAGAAGGAAGTTTTGTTAGGTGGTACAACAATTCAGTCATGAAAGCAAGCAGTTGACTTGACTATATAGTTTATTAATTGTGAGTCATCAGTCATCATCCGCTTTTAGGATTTGAATGTAAAAGTTTATTTTTCTGTATATATATACATGTTCATATTCATGCATGCATCAAAGGAATAACAATGAAAGAGAAGAGGATGATGGCTTCCCAAAAGAGTGCCGCAGTGCCAAGCCGGAGAATTAAGGAAATTGAACTAGATTGTAGTAGTCTTTTATTGAACTATTAGATTATTTTACAAATCAGATTTGATTATTTGAATGTTAATCAAAGGCCACACAGATAGCCCCTTAAAACTTGTCACAAATTTTCATAAGACACCTGGAGTAAGGCTTGTAAAATTGTACCTATTGAACATTTGATCCATGTTTAAACTGTCCTATTAGACACATTGCTGACATGACATGGTGTGTGCAAGGCATTTTGACATGGCATGATCCATATTTAAGAGCGTGAAAGGCATTTTGAATAAAAATAAATCTCTTCTTCATTCTCTTTCCCTGCCACCACCTCCTCCCCCATCCCAGCACCACGATAATGCCTTTACTCTTCCCCTTCCCCTTCTGCCACCACTTCCACACCAGATTTGTGTCTTCCGTTCTGCCTTCTCTCCTCACTATACCGGCTGCAACCAAACCCCACCATGAGAAAGAAACTTAAAAAAGGAAAAGAAGTGTGAGAGGTTAGAAGGGAGAATAGAGATCGTCAGAGTTGGTTTGAGCAATTCTGCTGTAAATTTCAACCAAAATTATCTATCATTACCTTGAATGGAAACCAATCTAATCTAACCAGAGAGTAAAGGAGATTTGAGGCTACAAGCTGAAGATTCTAATTGAGCAAAAACAAAGCAACCAAGATACCATGGTGGCTGAAGTCAATTACCAACGAATCCTTGAATTCCTTCAATGAATTTATGAACTGCGTAAGTCTATGAGAGGATATGAAAATAAAAAAAAAATTCACTTCCACAACTAAAACCACCATGAAAGAAGATGTAGAAGCAACTGTCCCTGAGCAAATATAAAAGGGTATTACACTTTCCTTATATGTTGGAGTTTTGATTGTGATTGGATCTTGAATATTTTCAGTAGTTGATTATAAGAGCATCAACAAGCTGATTTTAACTTTATTATTGTATCTAAAGAAATCTTGGGAAGGGGGTGTGCAAGAGGTGTTGTTCACTTGTATTATCCAATTATTATCATGATGCTTGTCTTAATAAATGTTTTTTACAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTTGATCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAGGTAAAACAAATTTCTGAACTTACAAATATGGTGTGTATTTTATTTTGACATTCTGATTCTCGATTTCTAGGTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTT</genome_strand>
        <mrna_strand>GGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACG..................................................................................................................................................................................................................................................................................................................................................................GTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTTGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTTGTAGCCTTTGGTGAAGCTGTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCCCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTGCAAGATGTGCGAAGTTTATTGCCTGATGAAAGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGTCGCGTTGGCCAG........................................................................................................................ATCATTGCCCAACTTCTCTCCGAGCGACTGATTCCGTTTGTTGCGCTTGATGTGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGTGTTGCAGTTGGTCGTGCACTTGACCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAG......................................................................GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCGATAACATTAGATACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401080" ref_strand="+" ref_description="SGN-E401080 [PPC-3-C17]">
      <seq>ggctttgggtgcatttttagctggtctgcttctggcagaaactgaattttcgttgcaagttgaatcagatattgctccatatcgtggactcctgctgggtctctttttcatgacggttggaatgtccattgatcccaagcttcttctttcaaactttccagtgattatgggctcattgggacttctattaggtggcaagactatcttggttgcattaattggtaaactgtttggtatttcaattgtatcggcagtaagagttggtctcctacttgctccgggtggagagtttgcctttgtagcctttggtgaagctgtcaatcagggaataatgtctcctgaattgtcatctctgctgtttcttgtggttggaatttcaatggccctcacaccatatctagctgctggaggtcaattaatagcatctcgttttgagctgcaagatgtgcgaagtttattgcctgatgaaagtgagacagatgatttgcaagatcatatcattatttgtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="73833" stop="70878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73533" g_stop="73419" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73418" i_stop="73065" i_length="354">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73064" g_stop="72855" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="325" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72854" i_stop="72406" i_length="449">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72405" g_stop="72256" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="475" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72255" i_stop="71216" i_length="1040">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71215" g_stop="71178" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="513" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E401080" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73533" e_stop="73419"/>
          <exon e_start="73064" e_stop="72855"/>
          <exon e_start="72405" e_stop="72256"/>
          <exon e_start="71215" e_stop="71178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACGGTAGGTGATAATTATCTTGTTTGGTGTACAATGTGAATGCAGTTTTGTGATCCTACAACTAGTCAATTGGAGTTAAGGTAGGATAGGTCTTGGTAAGGTTCTATTTACATTTTAAAATTCTTGCTCTAGTGTTCTCGCCAGCTTGTAGAGCTTAACTGTCTCTCCTGAGTTGTTCTCATTGAATGACTGTACTTCTGCATTCTGTAATACCACTTCAGCTGTTTAGCAAACAAAATTTTATCTATTTTAATCAACTTTTATCAAGGCTGAAATGAGAGTTTTCCATGAATATATTTATTATGACTTTGGGTGCTTTGCGTCTTTACAACTGAACAAGTATTATCTGGCTTGCAGGTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTCGTAGCCTTTGGTGAAGCTGTCAATCAGGTTTATTTCTTTGATAGCTTTAACCTTTCACAAGCATTCATATCCGTCAATAAAATTCTTTTATTCCATTTTTTCTCCCTCTCTTGCGATGCTGTTTAAACAGCTTCTGTTTCTTTGTCACGGAATTGTGGACCTATTTTACAAATGACCTATGTACTGAAATCAAATATGGAGCTTATCTGATCCTGTTGTTGGGCAAGTGGAGACTAATTACCATCAATCCTTCCAGTTTCTATCTACGTCGGCCATCTTATATCTACTTACATTTCTCTTATTTCATGAGGCTTGTTCGCCCTTATCTACCCTTAAATAAATTTGAAGCTGCAACTTATCTGGACAGTGCAGTGCTAAGATCTATGAGGAATTTTGCCCCATGAAAAAAATACATCTTCTTAGGATAAGTATCAGCTTATTTAATGATTCCTCATGGTTTTACCTTTTTTTTCCAGGGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCTCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTGCAAGATGTGCGAAGTTTATTGCCTGATGAAAGTGAGGTACTGCCTCCTACTTTTGGTGGCACTAGTTTTCTTCTGTGGTTTTTAGCAAGGATGAAACTAATGAACCGTGTAGATGTTTGCCAATTCTTATATTTTGACACCTAAAGACGGATCACACTAAAGCCTCTGTTTTCGTTTCTAAAATTTTCGAACATTTAGTATATCCTACTTGATTACATCTTACTTCAAGCAAAATATAGCTGCCAAAAATTGGTGTATGTCACATGATTATTTGTTGTGGTGCTAGATTTGTGAATTGATCACAGAAAAATACAGTTAGACCTGTACTTCAGGTTCAGGACCTTGCAAGCTAACACAAAATAGTTTGGATTCAGGTTGTCAATAGTTACAGGGTATAAATTAAAGGGCTAAGGTTTAGGGGCACAGTACTGTTGTTAAGAAAACCATAACGTATTTCTGGAGACGAGGAAAGCTGGAATTTCGGTGCTAGAAAACATTTCCTTTTACTCCCCTTCCCTTTCCCAAATTTCTTCATCCCTGGCTGTCCTTCCCTTTCTCAAATTTCTCCTTTCAATGCATTTCTTTTATCCTGGTTCATCTCTCAAGTTTTGTGCTGTGCTTTTTGTTGCTACTTAAGTTTCGTGCCTCAGTGTTGTGGTACTGGTACTAAGCCTTCTGAACCCTTTTAGTTTCTCTGCCGTTTTACTTTTGGCACAATTTTATTTTTTGCAAGGAATTATTCTTGCCTTGAAAAGTAATCATCTATGGAATTATAGATCCATCTCATCTCTGATTAGGTTTCAACTGAACCTAATGCCTCACTTGGTTTTCCTTCTGACCTTATTTAACTCATTGCTGCTTTGCTCTATGTAAGTTGTTATCGTTAGCATTTATTATGGAGATCATTGGTATGAGAAGTAACAGATGTTTTGTTACCAAAGTTCATTACTTGAAGGACTACATCATGTAATGATATCTCTATGGATTATTACCTGCATAAATGTAAAGAAGATTTCACTGACTTCAATCAGTTGCTTAAAAGAATATAAATTAATAGTTCCCTTTTTCTTTTCCAGACAGATGATTTGCAAGATCATATCATTATTTGTGGATT</genome_strand>
        <mrna_strand>GGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACG..................................................................................................................................................................................................................................................................................................................................................................GTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTTGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTTGTAGCCTTTGGTGAAGCTGTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCCCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTGCAAGATGTGCGAAGTTTATTGCCTGATGAAAGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGATTTGCAAGATCATATCATTATTTGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457512" ref_strand="+" ref_description="SGN-E457512 [cPRO-2-N8]">
      <seq>ctttcaatggctttgggtgcatttttagctggtctgcttctggcagaaactgaattttcgttgcaagttgaatcagatattgctccatatcgtggactcctgctgggtctctttttcatgacggttggaatgtccattgatcccaagcttcttctttcaaactttccagtgattatgggctcattgggacttctattaggtggcaagactatcttggttgcattaattggtaaactgtttggtatttcaattgtatcggcagtaagagttggtctcctacttgctccgggtggagagtttgcctttgtagcctttggtgaagctgtcaatcagggaataatgtctcctgaattgtcatctctgctgtttcttgtggttggaatttcaatggccctcacaccatatctagctgctggaggtcaattaatagcatctcgttttgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="73841" stop="71992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73541" g_stop="73419" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73418" i_stop="73065" i_length="354">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73064" g_stop="72855" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="333" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72854" i_stop="72406" i_length="449">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72405" g_stop="72292" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="447" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E457512" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73541" e_stop="73419"/>
          <exon e_start="73064" e_stop="72855"/>
          <exon e_start="72405" e_stop="72292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAATGGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACGGTAGGTGATAATTATCTTGTTTGGTGTACAATGTGAATGCAGTTTTGTGATCCTACAACTAGTCAATTGGAGTTAAGGTAGGATAGGTCTTGGTAAGGTTCTATTTACATTTTAAAATTCTTGCTCTAGTGTTCTCGCCAGCTTGTAGAGCTTAACTGTCTCTCCTGAGTTGTTCTCATTGAATGACTGTACTTCTGCATTCTGTAATACCACTTCAGCTGTTTAGCAAACAAAATTTTATCTATTTTAATCAACTTTTATCAAGGCTGAAATGAGAGTTTTCCATGAATATATTTATTATGACTTTGGGTGCTTTGCGTCTTTACAACTGAACAAGTATTATCTGGCTTGCAGGTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTCGTAGCCTTTGGTGAAGCTGTCAATCAGGTTTATTTCTTTGATAGCTTTAACCTTTCACAAGCATTCATATCCGTCAATAAAATTCTTTTATTCCATTTTTTCTCCCTCTCTTGCGATGCTGTTTAAACAGCTTCTGTTTCTTTGTCACGGAATTGTGGACCTATTTTACAAATGACCTATGTACTGAAATCAAATATGGAGCTTATCTGATCCTGTTGTTGGGCAAGTGGAGACTAATTACCATCAATCCTTCCAGTTTCTATCTACGTCGGCCATCTTATATCTACTTACATTTCTCTTATTTCATGAGGCTTGTTCGCCCTTATCTACCCTTAAATAAATTTGAAGCTGCAACTTATCTGGACAGTGCAGTGCTAAGATCTATGAGGAATTTTGCCCCATGAAAAAAATACATCTTCTTAGGATAAGTATCAGCTTATTTAATGATTCCTCATGGTTTTACCTTTTTTTTCCAGGGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCTCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTG</genome_strand>
        <mrna_strand>CTTTCAATGGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACG..................................................................................................................................................................................................................................................................................................................................................................GTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTTGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTTGTAGCCTTTGGTGAAGCTGTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCCCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740017" ref_strand="+" ref_description="SGN-E740017 [LC19DA01]">
      <seq>cattttagtctctcaacagatagctctatgaagagatagctctaagttctatttaacatcggcttagagctatctcttcatagaacttagtttttggattgggcagtgctcaggtcttagtgacagctgtggtggtcgggttaattgctaatttggttgccgggcaggctggacctgctgcaattgtgattggaaatgggcttgccttatcttccactgctgtcgtcctccaggtattgcaggagcgtggtgagagcacatcacgacatggacgagctacattttctgtattactctttcaggatctggcggtggttgttctactcatactgataccactaatttcaccaaattcatcaaaaggaggggttggtttccgagcaatagctgaggctcttggtttggctgctgtaaaggcaattgtagctatcactgccattattgccggaggacgtctgctgttgcggcctatttataagcagattgcagagaatcaaaatgcagaaatattttcggcaaatacgctccttgttatcctagggactagtcttctgactgccagggctggcctttcaatggctttgggtgcatttttagctggtctgcttctggcagaaactgaattttcgttgcaagttgaatcagatattgctccatatcgtggactcctgctgggtctctttttcatgacggttggaatgtccattgatcccaagcttcttctttcaaactttccagtgattatgggctcattgggacttctattaggtggcaagactatcttggttgcattaattggtaaactgtttggtatttcaattgtatcggcagtaagagtgggtctcctacttgctccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="75884" stop="72599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75471" g_stop="75412" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75411" i_stop="75298" i_length="114">
            <donor d_prob="0.846" d_score="0.78"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75297" g_stop="75178" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="233" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75177" i_stop="74798" i_length="380">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74797" g_stop="74729" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="302" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74728" i_stop="74527" i_length="202">
            <donor d_prob="0.618" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74526" g_stop="74461" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="368" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74460" i_stop="74254" i_length="207">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74253" g_stop="74164" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="458" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74163" i_stop="73754" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73753" g_stop="73649" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="563" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73648" i_stop="73548" i_length="101">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73547" g_stop="73419" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="692" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73418" i_stop="73065" i_length="354">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73064" g_stop="72899" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="858" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E740017" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75471" e_stop="75412"/>
          <exon e_start="75297" e_stop="75178"/>
          <exon e_start="74797" e_stop="74729"/>
          <exon e_start="74526" e_stop="74461"/>
          <exon e_start="74253" e_stop="74164"/>
          <exon e_start="73753" e_stop="73649"/>
          <exon e_start="73547" e_stop="73419"/>
          <exon e_start="73064" e_stop="72899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTGTTGAGAGACTAAGTTCTATGAAGAAATACGTTTTTGGATTGGGCAGTGCTCAGGTAATTGCAAAAGTTTGAGCACTTGGTATTATTAACCCACACCATATTGCTTAGTAGAGGTTCTCAACGAATAAGCTTTTCACACTAATTAGTAATTTCAATAAATGAATGCAGGTCTTAGTGACAGCTGTGGTGGTCGGGTTAATTGCTAATTTGGTTGCCGGGCAGGCTGGACCTGCTGCAATTGTGATTGGAAATGGGCTTGCCTTATCTTCCACTGCTGTCGTCCTCCAGGTAAATCCTTCTATACCTTTAGCAGGTCTTCCTTGCTAATGAATGATGGGCAAGATTTGGCAGTTAAATGGTTTTGTATACTCATTAAGCACGTTGATTTGGTGACCAGTTCAACACTCTAATCAAAGTTAATGCTTAAAAAGGGAACATTATTATGATATGTTCCCCCAAATCCAGAAACAGTTATTCTTGATAATGGCTTATGCTGAGACATCAAATCAGCATTGGAGTTTTCCTGATATTTTCCTTGTTGATTCAACATGTTTTCTACAATCCAAGGCATTGTAGTTTATCTATATATGGTTTGTCTATGTGCCTGTGACTCTTGCTCATCGTAAAATGAAACTTTAGTAACTAATGATTATGTTGCATATCTGCAGGTATTGCAGGAGCGTGGTGAGAGCACATCACGACATGGACGAGCTACATTTTCTGTATTACTCTTTCAGGTATCTGCATATAGACAGTACAAAGCTGTCACATCTTTCTCATGATATGGGTGTGATCAAGGCATACACACAACTCACATATATGTACTTTCCATCACCGTATAGGTGCCGTTATGCACTTGAAATGATATACTTGTGCTGTGACACTTTTAGAATTTTCCTTGTGATATGATTTAATAATTTTTTTCCTTTTATCCCCCAGGATCTGGCGGTGGTTGTTCTACTCATACTGATACCACTAATTTCACCAAATTCATCAAAAGGAGGGGTATAGAATCTTTTACATTACCGTCCTGTCTTCTAAAAATAATTTGAAATTTGTTTGTTTTGAACTTTTTATACTTACGATTCCAGCTATATGAGGTTCTGGACCTCAAATCACATGCAAAAACAACATTCTTTCCTTTTGATAGCTGTGAGTACACACTGTTGCCATTTTCCAAATTGCCTTGTTCTAACAGAACTTTCTTATTAGGTTGGTTTCCGAGCAATAGCTGAGGCTCTTGGTTTGGCTGCTGTAAAGGCAATTGTAGCTATCACTGCCATTATTGCCGGAGGACGTCTGGTAAGCTGTTTGTTCGTGTAGAATCTCTTCCAATATTATAAATGCTTCAGATTAATAGTGTATAGTTTTTTAAGTCCAAACTGCATCTCTTGTGACATTTGACCGTGGTCTTCCATTTTCTATTGTCTATAGATTATTAAAATTAATTTTTTGACTGTTACAAAAGGTAATTAGGGTGTTAAATCCAGTTTTCATTTTTTGCAAGTCTTGTAAGATATTTTTCTGTTAAATCCAAGGATTCTATGTATACCGGTTAGAAAAGAGTAAACAGTAAATCTGTCCGGCTATTAGTGTAAAAATCCCAATATTGATTGGGGTACTAATTAGACTTTTCATTTTACAAGTCTCGTAAGATATTTTGCTGTTAAATCTGAGGACACTAATATGTTCATTCTCTGTTCTGATTTCAGCTGTTGCGGCCTATTTATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCGGCAAATACGCTCCTTGTTATCCTAGGGACTAGTCTTCTGACTGCCAGGGTACTTACAAAACTCTTACGGGTCCATCTGTACTGCCCATGTTTGTTAGAACCATTAATTTGTGGAGTCTACGATGTGTTAACTGACGTGAATTAATGCAGGCTGGCCTTTCAATGGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACGGTAGGTGATAATTATCTTGTTTGGTGTACAATGTGAATGCAGTTTTGTGATCCTACAACTAGTCAATTGGAGTTAAGGTAGGATAGGTCTTGGTAAGGTTCTATTTACATTTTAAAATTCTTGCTCTAGTGTTCTCGCCAGCTTGTAGAGCTTAACTGTCTCTCCTGAGTTGTTCTCATTGAATGACTGTACTTCTGCATTCTGTAATACCACTTCAGCTGTTTAGCAAACAAAATTTTATCTATTTTAATCAACTTTTATCAAGGCTGAAATGAGAGTTTTCCATGAATATATTTATTATGACTTTGGGTGCTTTGCGTCTTTACAACTGAACAAGTATTATCTGGCTTGCAGGTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGG</genome_strand>
        <mrna_strand>C-ATCGGCTTAGAG-CT-ATCTCTTCATAGAACTTAGTTTTTGGATTGGGCAGTGCTCAG..................................................................................................................GTCTTAGTGACAGCTGTGGTGGTCGGGTTAATTGCTAATTTGGTTGCCGGGCAGGCTGGACCTGCTGCAATTGTGATTGGAAATGGGCTTGCCTTATCTTCCACTGCTGTCGTCCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................GTATTGCAGGAGCGTGGTGAGAGCACATCACGACATGGACGAGCTACATTTTCTGTATTACTCTTTCAG..........................................................................................................................................................................................................GATCTGGCGGTGGTTGTTCTACTCATACTGATACCACTAATTTCACCAAATTCATCAAAAGGAGGG...............................................................................................................................................................................................................GTTGGTTTCCGAGCAATAGCTGAGGCTCTTGGTTTGGCTGCTGTAAAGGCAATTGTAGCTATCACTGCCATTATTGCCGGAGGACGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGCGGCCTATTTATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCGGCAAATACGCTCCTTGTTATCCTAGGGACTAGTCTTCTGACTGCCAGG.....................................................................................................GCTGGCCTTTCAATGGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACG..................................................................................................................................................................................................................................................................................................................................................................GTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547765" ref_strand="+" ref_description="SGN-E547765 [TUS-71-N2](-)">
      <seq>aaactgtttacccacttgaaaaggtgacaatggaaggagattcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgctgttgaaaattcttcaacagaagagaataataatgatgataataataataataaaaaagagcctgaaaatgcagaggaatcccaagaatcataattttaaaaaaaaaaaaaaaagtacccttttttccctgagtattataattacatttaattaattggatcaattgatccttctatctattttgatagctaaaatgtttgtgtttatcatatattaaatttttcctatttgtttatatatatagttatccagggcaacccctcatttgtaattaattatattttattgtctggatacaatattcctttgttaatataatatataatatatatacattttgtgcaatgttgtgtcaagatgtatatttcacattaacaatattggattttaatttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="89159" stop="86522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88859" g_stop="88837" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88427" g_stop="87798" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="648" r_length="625" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="685"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E547765" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88859" e_stop="88837"/>
          <exon e_start="88427" e_stop="87798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAAT---AAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAAGAAAAAAAAAAGTACCCTCTCTTCCCTAAGTATTATAATTACATTTAATTGATTGGATCAATTGATCCTTCTATCTATTTTGATAGCTAAAATGTTTGTGTTTATAATATATTAAATTTTTCCTATTTGTTTATATATATATATAGTTATCCAGGGCAACCCCTCATTTGTAATTAATTATATTTTATTGTCTGGATACAATATTCCTTTGTTAATATAATATATAATATATATACATTTTGTGCAATGTTGTGTCAAGATGTATATTTCACATTAACAATATTGGATTTTAATTTTTT</genome_strand>
        <mrna_strand>AAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGATTCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCTTCAACAGAAGAGAATAATAATGATGATAATAATAATAATAAAAAAGAGCCTGAAAATGCAGAGGAATCCCAAGAATCATAAT-TTT--AAAAAA-AAAAAAAAAAGTACCCTTTTTTCCCTGAGTATTATAATTACATTTAATTAATTGGATCAATTGATCCTTCTATCTATTTTGATAGCTAAAATGTTTGTGTTTATCATATATTAAATTTTTCCTATTTG--T-T-TATATATATAGTTATCCAGGGCAACCCCTCATTTGTAATTAATTATATTTTATTGTCTGGATACAATATTCCTTTGTTAATATAATATATAATATATATACATTTTGTGCAATGTTGTGTCAAGATGTATATTTCACATTAACAATATTGGATTTTAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547358" ref_strand="+" ref_description="SGN-E547358 [TUS-71-D5](-)">
      <seq>tatttctaactctgaatagttattgagatggaagattttcaggcttctgtgaatataatcatttatttatttattttatatttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgctgttgaaaattcatcaacagaagagaataataatgatgataataataataataaaaaagagcctgaaaatgcagaggaatcacaagaatcataatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90667" stop="87793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90367" g_stop="90110" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="357" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="386" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="476" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88095" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="812" r_length="336" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E547358" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90367" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAAT---AAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAAGA</genome_strand>
        <mrna_strand>TATTTCTAACTCTGAATAGTTATTGAGATGGAAGATTTTCAGGCTTCTGTGAATATAATCATTTATTTATTTATTTTATA-TTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAATAATGATGATAATAATAATAATAAAAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364194" ref_strand="+" ref_description="SGN-E364194 [cLPP-16-D6]">
      <seq>gactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgctgttgaaaattcatcaacagaagagaataataatgatgataataataataataaaaaagagcctgaaaatgcagaggaatcacaagaatcattatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="89513" stop="87794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89213" g_stop="89155" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="88" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="178" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88427" g_stop="88096" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="513" r_length="335" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E364194" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89213" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAAT---AAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAAG</genome_strand>
        <mrna_strand>GACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAATAATGATGATAATAATAATAATAAAAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATTATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373975" ref_strand="+" ref_description="SGN-E373975 [TUS-33-M7](-)">
      <seq>aaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgctgttgaaaattcatcaacagaagagaataataatgatgataataataataataaaaaagagcctgaaaatgcagaggaatcacaagaatcataaaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90580" stop="87797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90280" g_stop="90110" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="271" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="297" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="387" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88097" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="721" r_length="334" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E373975" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90280" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAAT---AAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAA</genome_strand>
        <mrna_strand>AAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAATAATGATGATAATAATAATAATAAAAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAAAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374059" ref_strand="+" ref_description="SGN-E374059 [TUS-33-M5](-)">
      <seq>ttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgctgttgaaaattcatcaacagaagagaataataatgatgataataataataataaaaaagagcctgaaaatgcagaggaatcacaagaatcataatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90486" stop="87797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90186" g_stop="90110" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="177" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="203" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="293" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88097" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="627" r_length="334" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E374059" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90186" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAAT---AAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAA</genome_strand>
        <mrna_strand>TTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAATAATGATGATAATAATAATAATAAAAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359583" ref_strand="+" ref_description="SGN-E359583 [cLPP-5-E8]">
      <seq>tcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacattgaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgccaataacaaaaagaatagtgctgctgtaacaccattaaatgatgatgaaaataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90514" stop="87901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90214" g_stop="90110" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="205" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="234" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="324" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88201" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="551" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359583" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90214" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGC</genome_strand>
        <mrna_strand>TCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATTGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCCAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334613" ref_strand="+" ref_description="SGN-E334613 [cTOD-23-E20]">
      <seq>tgagatagagagggtgcctttttttgtttctttaatctcaataacgaaacaggttagaatattaaaaaaaaaaaaagaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttttaaaaaaatataaaaaaaatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgtttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcttatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaattcagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagggccaacattggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaaggaattaccaacatgtccctcaagctgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90793" stop="87954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90110" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="484" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="513" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="603" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88254" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="778" r_length="175" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E334613" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACA-TGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAAT</genome_strand>
        <mrna_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGGGCCAACATTGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAAGGAATTACCAACATGTCCCTCAAGCTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547359" ref_strand="+" ref_description="SGN-E547359 [TUS-71-D5]">
      <seq>agagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcaacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattaccaacatgtcctcaaagctgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90785" stop="87954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90485" g_stop="90110" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="476" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="505" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="595" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88254" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="770" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E547359" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90485" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGC-ACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAAT</genome_strand>
        <mrna_strand>AGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCAACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333182" ref_strand="+" ref_description="SGN-E333182 [cTOD-19-P22]">
      <seq>tttttttgtttctttaatctcaataacgaaacaggttagaatattaaaaaaaaaaaaagaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttttaaaaaaatataaaaaaaatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgtttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcttatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaattcagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaacattccacaaatcatgtttcatgggccacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatgggaaaaggaaattaccaacatgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90775" stop="87968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90110" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="495" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="585" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88268" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="743" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E333182" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCC</genome_strand>
        <mrna_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAA-CATTCCACAAATCATGTTTCATG-GGCCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGGAAAAGGAAATTACCAACATGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363448" ref_strand="+" ref_description="SGN-E363448 [cLPP-4-K20]">
      <seq>gcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagcatcattttgctcaactcttcatggaaaaaggaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90426" stop="87978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90126" g_stop="90110" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="117" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="143" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="233" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88278" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="383" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E363448" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90126" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTAC</genome_strand>
        <mrna_strand>GCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359661" ref_strand="+" ref_description="SGN-E359661 [cLPP-5-A5]">
      <seq>tcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtattgcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90514" stop="88015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90214" g_stop="90110" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="205" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="231" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="321" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88315" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359661" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90214" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCA</genome_strand>
        <mrna_strand>TCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360556" ref_strand="+" ref_description="SGN-E360556 [cLPP-8-D12]">
      <seq>catatataataatggcattcagaggaacagtggataaatgctcagcttgcgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactctcgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtatacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatgcaacctatgcatcccttgatggaaacttgtatagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90555" stop="88016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90255" g_stop="90110" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="246" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="272" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="362" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88316" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="474" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360556" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90255" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGC</genome_strand>
        <mrna_strand>CATATATAATAATGGCATTCAGAGGAACAGTGGATAAATGCTCAGCTTGCGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTATACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362901" ref_strand="+" ref_description="SGN-E362901 [cLPP-2-N6]">
      <seq>tagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacaatggggttgtgcacttactcatgcaacctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90788" stop="88044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90488" g_stop="90110" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="479" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="505" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="595" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="679" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362901" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90488" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCA</genome_strand>
        <mrna_strand>TAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACAATGGGGTTGTGCACTTACTCATGCAACCTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374060" ref_strand="+" ref_description="SGN-E374060 [TUS-33-M5]">
      <seq>tgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatggaaggagaatcattccacaaatcatgtttcaagtgtgcacatggaggttgtgcacttactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90769" stop="88055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90469" g_stop="90110" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="460" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="486" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88427" g_stop="88355" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="649" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E374060" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90469" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
          <exon e_start="88427" e_stop="88355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAGGTACAAATATTAAACCATTAATTAATTATTTTTTTAAAAAAAAAATATAATAAAAAGTTTTATTCATGATCAATTAATCTCAATTCATTCATAATTCAAAAATTTCCGAATCTATGCTAATTTTCAACTCCTCAAAGTATTTCATCGACCTAGCTTCAACCTATCAGTATTTTCTTCCTTTATTTGAACTAATTGAATATATATATATATATATAGGCTATAACATGTTATTGTTATATTTCCTAATTAATTAGTTAGTTACTATATCCAATTTTCTATGAAATATTAGCGTATTATTATAAGTTAATTTATAACCTTGTGTTCTCGTATATGTTATAAGTGTATAAAACATTATGTTCTTGTATATATTAAAACGTAAAGTCTGATTATTTTAAAATCAAAATTATAGGTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATG</genome_strand>
        <mrna_strand>TGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360440" ref_strand="+" ref_description="SGN-E360440 [cLPP-8-G17]">
      <seq>tttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttgaaaaggtgacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90763" stop="88531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90463" g_stop="90110" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="454" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="483" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88837" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="573" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360440" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90463" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG</genome_strand>
        <mrna_strand>TTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360185" ref_strand="+" ref_description="SGN-E360185 [cLPP-14-G23]">
      <seq>aacatctttttggtgtacaaatgtctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaagcttctgtgaatataattatctatttatttattatatatttgaaaaaaaaagatgaaaaatctatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgtcagatttgctgcctgctgatggtgttacttatcataaatgatgcttcaaatgtatccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaacataaatgtgctgcttgtgacaaaactgtttacccacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90708" stop="88539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90408" g_stop="90110" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="400" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="426" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88839" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="514" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360185" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90408" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGT-TGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAA</genome_strand>
        <mrna_strand>AACATCTTTTTGGTGTACAAATGTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAAGCTTCTGTGAATATAATTATCTATTTATTTATTATATATTTGAAAAAAAAAGATGAAAAATCTATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTCAGATTTGCTGCCTGCTGATGGTGTTACTTATCATAAATGATGCTTCAAATGTATCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAACATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360188" ref_strand="+" ref_description="SGN-E360188 [cLPP-14-I7]">
      <seq>aatattaactaaaaacaaataaggggcacaacatctttttggtgtacaaatgtctttttttattctgccatatttgtaactctgaatagttattgagattgaatattttcaagcttctgtgaatataatgatctatttatttattatatatttgaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgcagatttgttgcctgctgatggtgttacttatcataaatgatgcttcaaatgtatccactgctaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattgacaagagctccaagcaaactttcagctttgttctctggaacccaagataaatgtgctgcttgtgacaaaactgtttacccacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90728" stop="88541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90436" g_stop="90110" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="428" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="454" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88841" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="540" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360188" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90436" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAAAAAAAAAAAAAGAA-AGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGA</genome_strand>
        <mrna_strand>AATATTAACTAAAAACAAATAAGGGGCACAACATCTTTTTGGTGTACAAATGTCTTTTTTTATTCTGCCATATTTGTAACTCTGAATAGTTATTGAGATTGAATATTTTCAAGCTTCTGTGAATATAATGATCTATTTATTTATTATATATTTGAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGCAGATTTGTTGCCTGCTGATGGTGTTACTTATCATAAATGATGCTTCAAATGTATCCACTGCTAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360202" ref_strand="+" ref_description="SGN-E360202 [cLPP-14-M21]">
      <seq>tttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccagctaagtctgagaggcaaaattcattgacaagagctccaaacaaactttcagctttgttctctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90775" stop="88586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90110" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89064" g_stop="89036" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="495" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88886" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="536" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360202" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89064" e_stop="89036"/>
          <exon e_start="88926" e_stop="88886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAAC</genome_strand>
        <mrna_strand>TTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC..........................................................................................CAGCTAAGTCTGAGAGGCAAAATTCATTG.............................................................................................................ACAAGAGCTCCAAACAAACTTTCAGCTTTGTTCTCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360179" ref_strand="+" ref_description="SGN-E360179 [cLPP-14-E23]">
      <seq>aatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttggacaaatggggtttttttattctgccatattgctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattattgatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgggataaaactgtttattttgttgatttgttggctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactctcccatggatggaatgctatactgcaggactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattggacaagagctccaagcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90736" stop="88605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90436" g_stop="90110" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="428" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="455" r_length="27" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88905" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="477" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360179" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90436" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAAT-TTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATT-GGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGCTCCAAGCAAACTTT</genome_strand>
        <mrna_strand>AATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGGACAAATGGGGTTTTTTTATTCTGCCATATTGCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTGATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGGGATAAAACTGTTTATTTTGTTGATTTGTTGGCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTCCCATGGATGGAATGCTATACTGCAGGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTGG.............................................................................................................ACAAGAGCTCCAAGCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361912" ref_strand="+" ref_description="SGN-E361912 [cLPP-11-C9]">
      <seq>aaaggcagaacatctttttgttgtacaaatttctttttttattgtgccatatttctaactctgaatagctattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactctttcatggatggaatcctatactgcgagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcagaattcattgtcaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90716" stop="88731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90416" g_stop="90110" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="407" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="433" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88926" g_stop="88919" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="441" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361912" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90416" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
          <exon e_start="88926" e_stop="88919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTGGTATGTTCACAAATACACATTTCAAAAAATATATATTTTTCTTTTTAAAAAAGATTAAATTTGTATCTCAAATATTTTTAGCTAACAATTAATTATATATTTTGTGCAGACAAGAGC</genome_strand>
        <mrna_strand>AAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTGTGCCATATTTCTAACTCTGAATAGCTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTTCATGGATGGAATCCTATACTGCGAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAGAATTCATTG.............................................................................................................TCAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362932" ref_strand="+" ref_description="SGN-E362932 [cLPP-2-I15]">
      <seq>tgtttctttaatctcaataaccaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatcctaagtctgagaggcaaaattcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90769" stop="88736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90469" g_stop="90110" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="461" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89036" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="487" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362932" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90469" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTTAATCTCAATAA-CGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTCATTG</genome_strand>
        <mrna_strand>TGTTTCTTTAATCTCAATAACCAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361290" ref_strand="+" ref_description="SGN-E361290 [cLPP-15-M11]">
      <seq>acaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcggaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaatttttagaatcctaagtctgagaggcaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90750" stop="88740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90450" g_stop="90110" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="441" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89061" g_stop="89040" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="463" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361290" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90450" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
          <exon e_start="89061" e_stop="89040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATTGTAAGACACCATAATTTTTTTAAAATTAATTTTCGTTAACCCTCTTTCATCTTAATTTTTACTAATAATCTTAATTTATTAACGTTTCAGCAGCTAAGTCTGAGAGGCAAAATTC</genome_strand>
        <mrna_strand>ACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCGGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTTAGAATC.............................................................................................CTAAGTCTGAGAGGCAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361212" ref_strand="+" ref_description="SGN-E361212 [cLPP-15-E23]">
      <seq>tgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90779" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90479" g_stop="90110" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="470" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361212" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90479" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT</genome_strand>
        <mrna_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360206" ref_strand="+" ref_description="SGN-E360206 [cLPP-14-O21]">
      <seq>tttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaagaatctggaaattttagcaagaattttcagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90775" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90110" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360206" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT</genome_strand>
        <mrna_strand>TTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAAGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359951" ref_strand="+" ref_description="SGN-E359951 [cLPP-9-I5]">
      <seq>tttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90775" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90110" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359951" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90110"/>
          <exon e_start="89254" e_stop="89155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT</genome_strand>
        <mrna_strand>TTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363286" ref_strand="+" ref_description="SGN-E363286 [cLPP-4-G12]">
      <seq>tgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90779" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90479" g_stop="90110" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="469" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E363286" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90479" e_stop="90110"/>
          <exon e_start="89254" e_stop="89156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAAT</genome_strand>
        <mrna_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361494" ref_strand="+" ref_description="SGN-E361494 [cLPP-6-M17]">
      <seq>tttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90767" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90467" g_stop="90110" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="456" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361494" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90467" e_stop="90110"/>
          <exon e_start="89254" e_stop="89156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAAT</genome_strand>
        <mrna_strand>TTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAA-AAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362612" ref_strand="+" ref_description="SGN-E362612 [cLPP-1-B2]">
      <seq>aatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtccaaatttctttttctattctgccatatttctaactctgaatagctattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacctttcataaatcatgcttcgaatgtagcccctgcaaaggcactcttgtgatgagcaattactcttccctggatggaatcctatactgcaagactcatttcgaaccactatttaaggaatctggaaattttagcaagaattttcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90736" stop="88858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90436" g_stop="90110" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89158" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="424" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362612" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90436" e_stop="90110"/>
          <exon e_start="89254" e_stop="89158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGA</genome_strand>
        <mrna_strand>AATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTCCAAATTTCTTTTTCTATTCTGCCATATTTCTAACTCTGAATAGCTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACCTTTCATAAATCATGCTTCGAATGTAGCCCCTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCCTGGATGGAATCCTATACTGCAAGACTCATTTCGAACCACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362079" ref_strand="+" ref_description="SGN-E362079 [cLPP-11-I19]">
      <seq>tgagatagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90793" stop="88860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90110" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89160" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="479" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362079" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90110"/>
          <exon e_start="89254" e_stop="89160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</genome_strand>
        <mrna_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362080" ref_strand="+" ref_description="SGN-E362080 [cLPP-11-K11]">
      <seq>gagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90784" stop="88860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90484" g_stop="90110" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89160" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="470" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362080" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90484" e_stop="90110"/>
          <exon e_start="89254" e_stop="89160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</genome_strand>
        <mrna_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362752" ref_strand="+" ref_description="SGN-E362752 [cLPP-2-C5]">
      <seq>tgtttctttaatctcaataaccaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtaccaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattgtatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaaccattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90769" stop="88860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90469" g_stop="90110" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89160" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="458" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362752" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90469" e_stop="90110"/>
          <exon e_start="89254" e_stop="89160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTTAATCTCAATAA-CGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTA-CAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAA-CATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</genome_strand>
        <mrna_strand>TGTTTCTTTAATCTCAATAACCAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACCAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTGTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACCATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360858" ref_strand="+" ref_description="SGN-E360858 [cLPP-7-L2]">
      <seq>gaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattttagcaagaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90737" stop="88861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90437" g_stop="90110" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89161" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="422" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360858" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90437" e_stop="90110"/>
          <exon e_start="89254" e_stop="89161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTC</genome_strand>
        <mrna_strand>GAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362180" ref_strand="+" ref_description="SGN-E362180 [cLPP-11-N3]">
      <seq>gcctttttttgtttctattaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90778" stop="88874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90478" g_stop="90110" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89174" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="451" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362180" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90478" e_stop="90110"/>
          <exon e_start="89254" e_stop="89174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTTTGTTTCT-TTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTT</genome_strand>
        <mrna_strand>GCCTTTTTTTGTTTCTATTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360118" ref_strand="+" ref_description="SGN-E360118 [cLPP-14-I4]">
      <seq>tgagatagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattctaaaaaaaaagatcaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcattttgaacaactatttaaggaatctggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90793" stop="88875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90110" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89175" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360118" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90110"/>
          <exon e_start="89254" e_stop="89175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTT</genome_strand>
        <mrna_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAA-AAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTCTAAAAAAAAAGATCAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTTGAACAACTATTTAAGGAATCTGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359640" ref_strand="+" ref_description="SGN-E359640 [cLPP-5-H12]">
      <seq>agatagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatgggatcctatactgcaagactcatttcgaacaactatttaaggaatctggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90791" stop="88875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90491" g_stop="90110" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89175" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="462" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359640" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90491" e_stop="90110"/>
          <exon e_start="89254" e_stop="89175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTT</genome_strand>
        <mrna_strand>AGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGGATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364367" ref_strand="+" ref_description="SGN-E364367 [cLPP-20-G17]">
      <seq>tgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaactatttaaggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90779" stop="88884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90479" g_stop="90110" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89184" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="441" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E364367" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90479" e_stop="90110"/>
          <exon e_start="89254" e_stop="89184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATC</genome_strand>
        <mrna_strand>TGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364142" ref_strand="+" ref_description="SGN-E364142 [cLPP-16-I12]">
      <seq>gagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatttcgaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90784" stop="88897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90484" g_stop="90110" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89197" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="433" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E364142" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90484" e_stop="90110"/>
          <exon e_start="89254" e_stop="89197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAAC</genome_strand>
        <mrna_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATTTCGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359669" ref_strand="+" ref_description="SGN-E359669 [cLPP-5-C9]">
      <seq>tttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagatcaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgctgatttcgtgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgcaagactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90767" stop="88906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90467" g_stop="90110" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89206" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="407" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359669" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90467" e_stop="90110"/>
          <exon e_start="89254" e_stop="89206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATT</genome_strand>
        <mrna_strand>TTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATCAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGCTGATTTCGTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGCAAGACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360870" ref_strand="+" ref_description="SGN-E360870 [cLPP-7-P2]">
      <seq>tgagatagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90793" stop="88916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90110" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89216" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="424" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360870" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90110"/>
          <exon e_start="89254" e_stop="89216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGA-AAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGC</genome_strand>
        <mrna_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361720" ref_strand="+" ref_description="SGN-E361720 [cLPP-12-D10]">
      <seq>tgagatagagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90793" stop="88918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90110" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89218" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="423" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361720" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90110"/>
          <exon e_start="89254" e_stop="89218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTT--TTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATACT</genome_strand>
        <mrna_strand>TGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359564" ref_strand="+" ref_description="SGN-E359564 [cLPP-5-M11]">
      <seq>agggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaatcctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90783" stop="88919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90483" g_stop="90110" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89219" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="411" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E359564" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90483" e_stop="90110"/>
          <exon e_start="89254" e_stop="89219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATT-AAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAATCTTATAC</genome_strand>
        <mrna_strand>AGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAATCCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364093" ref_strand="+" ref_description="SGN-E364093 [cLPP-16-A5]">
      <seq>actagtctcgagttttttttttttgggtaatctcaataacggaacaggttagaatattaaaaaaaaaaaaaaaaaggccgaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90761" stop="88926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90110" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="379" r_length="366" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89226" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="408" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E364093" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90110"/>
          <exon e_start="89254" e_stop="89226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGGAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGGGTAATCTCAATAACGGAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCCGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361495" ref_strand="+" ref_description="SGN-E361495 [cLPP-6-M19]">
      <seq>acaaactgacatacagagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtatatttatgtgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaggcactcttgtgatgagcaattactcttccatggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90799" stop="88929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90499" g_stop="90110" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89254" g_stop="89229" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="416" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E361495" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90499" e_stop="90110"/>
          <exon e_start="89254" e_stop="89229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTGGTATGTATCCCTATTTTCTTTACACATTTACAATTTAATTCTACGCGCATCCTAAAAAGTTTAAAAATTCAAAGAATGGTCAGTTGAATCAAACCCTAGCTATCTAACTCCACTCGTGTTTCTGTCCTACAAGCCATATAGAAGAGTAACAAGTAAAATATCTTTAATCAAAAAATTATATATTACATAAAAAAAAATATCGCACATTTGTCAAAAATTATTTTTTATGTATATATATTAAATTTTTAACATACATGGATGAAATTTCTGATTTCACTTGGCCTCACCCTCCCCTTCCACTGAACAATAATCTATCAACTATACCACAATATCGAATTTTATTTACTATCAATTGTATAAATTATTTATTAACATTTAGAGGAGATATTATAATTAGATCATTTTTATATATATTGAAGGCACATATTTTTAAATTCAAGTTATGTTATTCCCTCCGTTCAGAAATGTTTATCGTATTGTGCTTATCGAAAGTCAATTTAATTAATTTTTAAAGGTAAATTAGATCAAATTAATTCGATATTTTAAACAAAAAAATTAGATATTCTAAAACTATATGAAAAGTATTATAAATTACAATTTTTTTCATATTAATATGATGAAAAAAATCATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGACTCTATAAATTGAAACCATGATAAACATTATCGGACGGAGAGTAACGTTTTGGCTTTATAAGAGATCAAGTTATTAAAGAAATTAAATTTTCAACCATCATTAAGTATCTATTATTTTTGTGTTTCTTATTTCTGTTATTACATTATTCATTATATATATTTGATAATTTGGAATTATTAATTTTTTGGCAGATGAGCAATTACTCTTCCATGGATGG</genome_strand>
        <mrna_strand>ACAAACTGACATACAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTATATTTATGTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAATTACTCTTCCATGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362228" ref_strand="+" ref_description="SGN-E362228 [cLPP-11-P16]">
      <seq>gagggtgcctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccactgcaaaagcactcttgtgatgagcaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90784" stop="89798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90484" g_stop="90110" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E362228" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90484" e_stop="90110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG</genome_strand>
        <mrna_strand>GAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACTGCAAAAGCACTCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364212" ref_strand="+" ref_description="SGN-E364212 [cLPP-16-J6]">
      <seq>tttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttattttatattttaaaaaaaaagataaaaaatatatatatacatatataataatggcattcacaggaacattggataaatgctcagcttgtgataaaactgtttattttgttgatttgttgtctgctgatggtgttacttatcataaatcatgcttcaaatgtagccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90775" stop="89827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90475" g_stop="90127" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E364212" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90475" e_stop="90127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACT</genome_strand>
        <mrna_strand>TTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGCTTCAAATGTAGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363967" ref_strand="+" ref_description="SGN-E363967 [cLPP-16-C8]">
      <seq>cctttttttgtttctttaatctcaataacaaaacaggttagaatattaaaaaaaaaaaaaaacaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaacattttcaggcttatgtgaatataaatatttatttatttattttatattttaaaaaaaaagataataaatatatatatacatatataataatggccttcacatgaacattggataaatgctcagcttgtgataaaactgtttattttgttgattacgtgtctgctgatggtgttacttatcataaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90777" stop="89844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90477" g_stop="90144" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E363967" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90477" e_stop="90144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATG</genome_strand>
        <mrna_strand>CCTTTTTTTGTTTCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAAAAAAAAAAACAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAACATTTTCAGGCTTATGTGAATATAAATATTTATTTATTTATTTTATATTTTAAAAAAAAAGATAATAAATATATATATACATATATAATAATGGCCTTCACATGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTACGTGTCTGCTGATGGTGTTACTTATCATAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360777" ref_strand="+" ref_description="SGN-E360777 [cLPP-7-G12]">
      <seq>agggtgcctatgtttgttcctttaatctcaataacaaaacaggttagaatattaaaaagaaaaaaaaaaaggcagaacatctttttgttgtacaaatatctttttttattctgccatatgtctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatttatttatttatgtcatattttaaaaaaaaagataaaaaatatatatatacatatataatactggcattcacaggaacattgcataaatgctcaccttgtgataaaactgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90783" stop="89891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90483" g_stop="90191" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360777" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90483" e_stop="90191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTAT</genome_strand>
        <mrna_strand>AGGGTGCCTATGTTTGTTCCTTTAATCTCAATAACAAAACAGGTTAGAATATTAAAAAGAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATATCTTTTTTTATTCTGCCATATGTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATGTCATATTTTAAAAAAAAAGATAAAAAATATATATATACATATATAATACTGGCATTCACAGGAACATTGCATAAATGCTCACCTTGTGATAAAACTGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365120" ref_strand="+" ref_description="SGN-E365120 [cLPP-17-E24]">
      <seq>ttttgtttctttaatctcaataacaaaacaggttacaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgaacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaggcttctgtgaatataattatctatttatttatgttatattttaagaaacaagattaaacatatatttgtacatatataataatggcattcacaggaacatcggatcaatgctcagcttgtgataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90772" stop="89898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90472" g_stop="90198" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E365120" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90472" e_stop="90198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAAC</genome_strand>
        <mrna_strand>TTTTGTTTCTTTAATCTCAATAACAAAACAGGTTACAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGAACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATCTATTTATTTATGTTATATTTTAAGAAACAAGATTAAACATATATTTGTACATATATAATAATGGCATTCACAGGAACATCGGATCAATGCTCAGCTTGTGATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360201" ref_strand="+" ref_description="SGN-E360201 [cLPP-14-M9]">
      <seq>tcccccgggctgcaggctttttttgcttctttaatctcaataactaaacaggttagaatattaaaaaaaaaaaaaaaaaggcagaacatctttttgttgtacaaatttctttttttattctgccatatttctaactctgaatagttattgagattgaagattttcaagcttctgtgaatataattatttatttatttattttatatttcaaaaaaaaagataaaaaatatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="90786" stop="89985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90476" g_stop="90256" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="237" r_length="221" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E360201" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90476" e_stop="90256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATA</genome_strand>
        <mrna_strand>CTTTTTTTGCTTCTTTAATCTCAATAACTAAACAGGTTAGAATATTAAAAAAAAAAAAAAAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAAGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTCAAAAAAAAAGATAAAAAATATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371841" ref_strand="+" ref_description="SGN-E371841 [TUS-30-K15](-)">
      <seq>taacttggcgcttttcttagtttttaagctatttgtggcagtttgaactaatttaacaggtcagttataagcagatgggaggtttgcttcttcaggtacataagaccaagacaaaatgatattaagctgaaatcattgctggaggagctttgaatccaactggaagacaagtaatgaagtaaacagtgaccttatgcttgagccttcgaaagattaaagctctttctcctttccaatggaaaactgctataaatattttcttgatgaaagtcttctcttcacttcttggcattactgttgcagcctcctcttctttgttttctccatcttccactgaatctccccaatgaagtggatagctcctcaggaacactcttctgttattgtagtcttcattacgaaaacttcttgatctagcaccattttcctttgaaattgtagcatccatgagccaagatattagtaaatcttgtgcaggctctgctttataataactaagtggatacttagaatgtgcttatgtctatgaaaaaagagagaaacgacaagttttcacctagaaaaatgaggctggggggaataatttaatcacttcgtttggtacttttagttgtttcttgtcttttcaagagttgttatttgtactatagcctaaaagctatatcttttcattatttggaaaaataaattaaacctattttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="93628" stop="92152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93328" g_stop="93219" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93218" i_stop="93049" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93048" g_stop="92458" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="701" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="715"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E371841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93328" e_stop="93219"/>
          <exon e_start="93048" e_stop="92458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTGGCGCTTTTCTTAGTTTTTAAGCTATTTGTGGCAGTTTGAACTAATTTAACAGGTCAGTTATAAGCAGATGGGAGGTTTGCTTCTTCAGGTACATAAGACCAAGGTACACATTTCTATATAAGTTAGCAATATAGTATTCATCTTACTACTTCCACTCTTCTGTACATGCCTTTCAGTTGTACTGAAATTAAACACATTACTGTGAACGATAGTCGATATATGCTTAGTAAAGTAGATGGAATTTCAACTATTGATAGTAGTTTTTTATGGTAGACAAAATGATATTAAGCTGAAATCATTGCTGGAGGAGCTTTGAATCCAACTGGAAGACAAGTAATGAAGTAAACAGTGACCTTATGCTTGAGCCTTCGAAAGATTAAAGCTCTTTCTCCTTTCCAATGGAAAACTGCTATAAATATTTTCTTGATGAAAGTCTTCTCTTCACTTCTTGGCATTACTGTTGCAGCCTCCTCTTCTTTGTTTTCTCCATCTTCCACTGAATCTCCCCAATGAAGTGGATAGCTCCTCAGGAACACTCTTCTGTTATTGTAGTCTTCATTACGAAAACTTCTTGATCTAGCACCATTTTCCTTTGAAATTGTAGCATCCATGAGCCAAGATATTAGTAAATCTTGTGCAGGCTCTGCTTTATAATAACTAAGTGGATACTTAGAATGTGCTTATGTCTATGAAAAAAGAGAGAAACGACAAGTTTTCACCTAGAAAAATGAGGCTGGGGGGAATAATTTAATCACTTCGTTTGGTACTTTTAGTTGTTTCTTGTCTTTTCAAGAGTTGTTATTTGTACTATAGCCTAAAAGCTATATCTTTTCATTATTTGGAAAAATAAATTAAACCTATTTT</genome_strand>
        <mrna_strand>TAACTTGGCGCTTTTCTTAGTTTTTAAGCTATTTGTGGCAGTTTGAACTAATTTAACAGGTCAGTTATAAGCAGATGGGAGGTTTGCTTCTTCAGGTACATAAGACCAAG..........................................................................................................................................................................ACAAAATGATATTAAGCTGAAATCATTGCTGGAGGAGCTTTGAATCCAACTGGAAGACAAGTAATGAAGTAAACAGTGACCTTATGCTTGAGCCTTCGAAAGATTAAAGCTCTTTCTCCTTTCCAATGGAAAACTGCTATAAATATTTTCTTGATGAAAGTCTTCTCTTCACTTCTTGGCATTACTGTTGCAGCCTCCTCTTCTTTGTTTTCTCCATCTTCCACTGAATCTCCCCAATGAAGTGGATAGCTCCTCAGGAACACTCTTCTGTTATTGTAGTCTTCATTACGAAAACTTCTTGATCTAGCACCATTTTCCTTTGAAATTGTAGCATCCATGAGCCAAGATATTAGTAAATCTTGTGCAGGCTCTGCTTTATAATAACTAAGTGGATACTTAGAATGTGCTTATGTCTATGAAAAAAGAGAGAAACGACAAGTTTTCACCTAGAAAAATGAGGCTGGGGGGAATAATTTAATCACTTCGTTTGGTACTTTTAGTTGTTTCTTGTCTTTTCAAGAGTTGTTATTTGTACTATAGCCTAAAAGCTATATCTTTTCATTATTTGGAAAAATAAATTAAACCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312459" ref_strand="+" ref_description="SGN-E312459 [cLEZ-20-M20]">
      <seq>atggatgctacaatttcaaaggaaaatggtgctagatcaagaagttttcgtaatgaagactacaataacagaagagtgttcctgaggagctatccacttcattggggagattcagtggaagatggagaaaacaaagaagaggaggctgcaacagtaatgccaagaagtgaagagaagactttcatcaagaaaatatttatagcagttttccattggaaaggagaaagagctttaatctttcgaaggctcaagcataaggtcactgtttacttcattacttgtcttccagttggattcaaagctcctccagcaatgatttcagcttaatatcattttgtctaccataaaaaactactatcaatagttgaaattccatctactttactaagcatatatcgactatcgttcacagtaatgtgtttaatttcagtacaactgaaaggcatgtacagaagagtggaagtagtaagatgaatactatattgctaacttnnnaaaaaaaaaanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="+" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="92411" stop="93502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="93202" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="512"/>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="+" ref_id="SGN-E312459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="93202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATGCTACAATTTCAAAGGAAAATGGTGCTAGATCAAGAAGTTTTCGTAATGAAGACTACAATAACAGAAGAGTGTTCCTGAGGAGCTATCCACTTCATTGGGGAGATTCAGTGGAAGATGGAGAAAACAAAGAAGAGGAGGCTGCAACAGTAATGCCAAGAAGTGAAGAGAAGACTTTCATCAAGAAAATATTTATAGCAGTTTTCCATTGGAAAGGAGAAAGAGCTTTAATCTTTCGAAGGCTCAAGCATAAGGTCACTGTTTACTTCATTACTTGTCTTCCAGTTGGATTCAAAGCTCCTCCAGCAATGATTTCAGCTTAATATCATTTTGTCTACCATAAAAAACTACTATCAATAGTTGAAATTCCATCTACTTTACTAAGCATATATCGACTATCGTTCACAGTAATGTGTTTAATTTCAGTACAACTGAAAGGCATGTACAGAAGAGTGGAAGTAGTAAGATGAATACTATATTGCTAACTT</genome_strand>
        <mrna_strand>ATGGATGCTACAATTTCAAAGGAAAATGGTGCTAGATCAAGAAGTTTTCGTAATGAAGACTACAATAACAGAAGAGTGTTCCTGAGGAGCTATCCACTTCATTGGGGAGATTCAGTGGAAGATGGAGAAAACAAAGAAGAGGAGGCTGCAACAGTAATGCCAAGAAGTGAAGAGAAGACTTTCATCAAGAAAATATTTATAGCAGTTTTCCATTGGAAAGGAGAAAGAGCTTTAATCTTTCGAAGGCTCAAGCATAAGGTCACTGTTTACTTCATTACTTGTCTTCCAGTTGGATTCAAAGCTCCTCCAGCAATGATTTCAGCTTAATATCATTTTGTCTACCATAAAAAACTACTATCAATAGTTGAAATTCCATCTACTTTACTAAGCATATATCGACTATCGTTCACAGTAATGTGTTTAATTTCAGTACAACTGAAAGGCATGTACAGAAGAGTGGAAGTAGTAAGATGAATACTATATTGCTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286213" ref_strand="+" ref_description="SGN-E286213 [cLES-11-C18]">
      <seq>ttcccttatcccatattttcctccagatattgaaaggcttaagaagattgtaactcaagaatgggtgaaaaaagttgtctcatgtcttcttaatccctcttcgtttcccacttctgatgatattgaacgaagagacaaatgggtcactgaacatgttgaagtggagatttatgaagtcagagggatccattctatgaatatagtggttcgtaatatcctagatggaggtgtgaactgctcaaggagaatcgataggcatggaaagactctatccgatctcatattgtgccagaaagtattattgcctctgtaattgaacatatggcaagactggaatagacacactggctctggctccattttctttatcctgggaggtgatattgacagtgggttggggacaagctcctaacctagctacaagttggagtatattagaaactgaagatttgtttttgaaataaaagtttttcactctttgtgaaagccatgaatgtcacaggtacagaatcagaatttgttagtgcacaacatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="94368" stop="93155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94068" g_stop="93604" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93603" i_stop="93528" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93527" g_stop="93455" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="538" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E286213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94068" e_stop="93604"/>
          <exon e_start="93527" e_stop="93455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAAGTATGTTGTAGTACCAATACATGTTCATAAACAAGCTATCCGAACTCTTTATTCTGAAATAAAATTACTGTTGCAGAGTTTTTCACTCTTTGTGAAAGCCATGAATGTCACAGGTACAGAATCAGAATTTGTTAGTGCACAACATGGAT</genome_strand>
        <mrna_strand>TTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAA............................................................................AGTTTTTCACTCTTTGTGAAAGCCATGAATGTCACAGGTACAGAATCAGAATTTGTTAGTGCACAACATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379419" ref_strand="+" ref_description="SGN-E379419 [TUS-3-F17](-)">
      <seq>agcaacaagaaataaaattatgcaatcagacggtctggctagccctaaaaacgtaatacggaccacttcattccatgaatcagtcttgcaatcactgccaacggaaactactttgaatcacaaagaaggctcaccgcaaattgagctgatctcccctgctccacatgacaggaagattcctatttatgattttgcacatagcagagctggtgataaaggagatgatataaacttttcccttatcccatattttcctccagatattgaaaggcttaagaagattgtaactcaagaatgggtgaaaaaagttgtctcatgtcttcttaatccctcttcgtttcccacttctgatgatattgaacgaagagacaaatgggtcactgaacatgttgaagtggagatttatgaagtcagagggatccattctatgaatatagtggttcgtaatatcctagatggaggtgtgaactgctcaaggagaatcgataggcatggaaagactctatccgatctcatattgtgccagaaagtattattgcctctgtaattgaacatatggcaagactggaatagacacactggctctggctccattttctttatcctgggaggtgatattgacagtgggttggggacaagctcctaacctagctacaagttggagtatattagaaactgaagatttgtttttgaaataaagtatgttgtagtaccaataggagttcataaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0182E16-vJuy4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0182E16.1" temp_strand="-" temp_description="C00HBa0182E16.1  CU457732.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0182E16 sequenced_by:sanger upload_account_name:uk">
        <position start="94602" stop="93285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94302" g_stop="93568" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0182E16.1" gen_strand="-" ref_id="SGN-E379419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0182E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94302" e_stop="93568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAAGAAATAAAATTATGCAATCAGACGGTCTGGCTAGCCCTAAAAACGTAATACGGACCACTTCATTCCATGAATCAGTCTTGCAATCACTTGCAACGGAAACTACTTTGAATCACAAAGAAGGCTCACCGCAAATTGAGCTGATCTCCCCTGCTCCACATGACAGGAAGATTCCTATTTATGATTTTGCACATAGCAGAGCTGGTGATAAAGGAGATGATATAAACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAAGTATGTTGTAGTACCAATACATGTTCATAAACAAGC</genome_strand>
        <mrna_strand>AGCAACAAGAAATAAAATTATGCAATCAGACGGTCTGGCTAGCCCTAAAAACGTAATACGGACCACTTCATTCCATGAATCAGTCTTGCAATCACTGCCAACGGAAACTACTTTGAATCACAAAGAAGGCTCACCGCAAATTGAGCTGATCTCCCCTGCTCCACATGACAGGAAGATTCCTATTTATGATTTTGCACATAGCAGAGCTGGTGATAAAGGAGATGATATAAACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAAGTATGTTGTAGTACCAATAGGAGTTCATAAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>150</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="488" PGL_stop="5046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="490" e_stop="868"/>
            <exon e_start="2898" e_stop="3085"/>
            <exon e_start="3662" e_stop="3785"/>
            <exon e_start="4227" e_stop="4357"/>
            <exon e_start="4570" e_stop="4844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.285" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="490" e_stop="868" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2898" e_stop="3085" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3662" e_stop="3785" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4227" e_stop="4357" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.285" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="4570" e_stop="4844" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="490" stop="868"/>
              <exon start="2898" stop="3056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3085"/>
              <exon start="3662" stop="3762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3085"/>
              <exon start="3662" stop="3716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2967" stop="3085"/>
              <exon start="3662" stop="3785"/>
              <exon start="4227" stop="4357"/>
              <exon start="4570" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432365" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACGCTGCAGTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG : TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG : TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAG : AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT : GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATG</gDNA_template>
            <first_frame> A  R  C  S  P  T  N  C  D  S  H  Q  *  A  Q  Q  T  P  W  P  H  K  N  C  I  A  F  P  R  Y  E  L  R  L  *  K  S  V  E  K  L  R  D  L  T  E  I  E  N  E  *  Q  E  D  I  D  S  W  W  H  R  L  L  G  S  A  S  S  A  G  I  H  G  N  P  K  Y  S  S  I  C  S  L  V  S  L  Y  L  P  H  Q  S  P  T  *  A  P  T  G  S  H  S  S  C  P  T  L  S  C  R  F  T  N  R  Q  W  L  *  *  H  L  T  K  F  W  A   : V  Y  E  G  T  K  S  F  Y  K  E  D  D  E  T  L  P  V  N  V  Y  G  R  S  K  V  A  A  E  Q  F  I  S  A  N  Y  S  N  F  A  I  L  R  S  S  I  I  Y  G  P  Q  T  V  S  P  V  P  K  S  L  P  V  Q  :  W  M  D  S  V  L  A  K  G  E  A  M  D  F  F  H  D  E  F  R  C  P  V  Y  V  K  D  L  V  T  I  I  W  T  L  T  N  K  W  I  S   : E  K  E  P  M  Q  L  L  L  N  V  G  G  P  D  R  V  S  R  V  Q  M  A  E  A  V  A  H  I  R  G  Y  N  L  S  L  I  K  S  V  S  S  S  T  :  V  N  R  G  V  K  S  P  A  D  I  S  M  D  T  N  R  L  I  Q  T  L  N  M  S  P  T  S  F  R  N  G  V  K  L  T  L  E  A  E  F  A  S  A  S  *  *  F  L  S  C  S  F  P  E  C  S  S  S  Y  V  F  V  L  S  N  Y  V  H  F  F  K  N  I  I  *  L  Q  N  L  S  K  E  F  G  P  S  H  S  R  A   </first_frame>
            <second_frame>  H  A  A  V  Q  R  T  V  T  L  I  S  R  H  S  K  L  L  G  P  I  K  T  A  L  L  F  Q  D  T  N  Y  D  C  R  N  Q  W  R  S  *  E  I  S  Q  K  L  K  M  S  S  K  K  I  L  I  V  G  G  T  G  Y  L  G  Q  H  L  L  Q  E  F  T  A  T  Q  N  T  L  P  Y  A  L  S  L  A  F  T  Y  H  T  N  P  P  P  E  R  L  L  E  A  I  P  H  A  L  P  F  H  V  D  L  R  T  G  N  G  F  D  D  I  S  Q  N  F  G  Q  :  F  T  K  G  P  N  P  S  T  R  K  M  M  R  P  F  L  *  M  F  M  E  D  Q  R  *  Q  Q  S  N  L  Y  L  Q  I  T  Q  I  L  Q  F  *  G  A  V  L  F  M  D  L  R  L  S  P  L  S  Q  N  H  F  Q  F  S :   G  W  I  V  F  L  Q  R  E  K  P  W  I  F  F  T  M  N  S  V  V  L  S  M  *  R  I  L  *  P  S  Y  G  P  *  Q  I  N  G  S  Q  :  R  R  S  Q  C  S  Y  F  *  T  W  V  D  L  I  E  F  P  G  F  R  W  L  K  L  L  H  I  F  E  V  I  I  C  H  *  S  N  Q  Y  P  H  Q  L :   L  T  A  A  L  S  L  Q  Q  I  Y  P  W  I  P  T  D  *  F  R  H  S  I  C  H  Q  L  H  L  G  M  V  L  S  *  H  L  K  L  N  L  L  L  H  H  S  S  F  C  L  A  L  F  Q  N  A  H  L  H  M  Y  S  F  C  Q  I  M  F  I  F  S  K  I  *  F  D  F  R  I  Y  Q  K  N  L  D  L  R  T  Q  G  H  </second_frame>
            <third_frame>   T  L  Q  S  N  E  L  *  L  S  S  V  G  T  A  N  S  L  A  P  *  K  L  H  C  F  S  K  I  R  I  T  I  V  E  I  S  G  E  A  K  R  S  H  R  N  *  K  *  V  A  R  R  Y  *  *  L  V  A  Q  V  T  W  V  S  I  F  C  R  N  S  R  Q  P  K  I  L  F  H  M  L  S  R  *  P  L  P  T  T  P  I  P  H  L  S  A  Y  W  K  P  F  L  M  P  Y  P  F  M  *  I  Y  E  P  A  M  A  L  M  T  S  H  K  I  L  G  S :   L  R  R  D  Q  I  L  L  Q  G  R  *  *  D  P  S  C  E  C  L  W  K  I  K  G  S  S  R  A  I  Y  I  C  K  L  L  K  F  C  N  F  E  E  Q  Y  Y  L  W  T  S  D  C  L  P  C  P  K  I  T  S  S  S   : V  D  G  *  C  S  C  K  G  R  S  H  G  F  F  S  R  *  I  P  L  S  C  L  C  E  G  S  C  D  H  H  M  D  P  D  K  *  M  D  L  R :   E  G  A  N  A  V  T  S  E  R  G  W  T  *  S  S  F  Q  G  S  D  G  *  S  C  C  T  Y  S  R  L  *  F  V  I  D  Q  I  S  I  L  I  N   : C  *  P  R  R  *  V  S  S  R  Y  I  H  G  Y  Q  Q  I  N  S  D  T  Q  Y  V  T  N  F  I  *  E  W  C  *  V  N  T  *  S  *  I  C  F  C  I  I  V  V  F  V  L  L  F  S  R  M  L  I  F  I  C  I  R  F  V  K  L  C  S  F  F  Q  K  Y  N  L  T  S  E  F  I  K  R  I  W  T  F  A  L  K  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="847" stop="868"/>
                    <exon start="2898" stop="3085"/>
                    <exon start="3662" stop="3785"/>
                    <exon start="4227" stop="4357"/>
                    <exon start="4570" stop="4707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLTKFWAVYEGTKSFYKEDDETLPVNVYGRSKVAAEQFISANYSNFAILRSSIIYGPQTVSPVPKSLPVQWMDSVLAKGEAMDFFHDEFRCPVYVKDLVTIIWTLTNKWISEKEPMQLLLNVGGPDRVSRVQMAEAVAHIRGYNLSLIKSVSSSTVNRGVKSPADISMDTNRLIQTLNMSPTSFRNGVKLTLEAEFASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="490" e_stop="868"/>
            <exon e_start="2898" e_stop="3085"/>
            <exon e_start="3662" e_stop="4081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="490" e_stop="868" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="869" i_stop="2897" i_length="2029"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2898" e_stop="3085" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3662" e_stop="4081" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="490" stop="868"/>
              <exon start="2898" stop="3056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3085"/>
              <exon start="3662" stop="3762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3085"/>
              <exon start="3662" stop="3716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="868"/>
              <exon start="2898" stop="3049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3032" stop="3085"/>
              <exon start="3662" stop="4081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACGCTGCAGTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG : TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG : TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAGGTTTGACATGCTTTGACCCTCTAGACTGATTTGCCTTGATCACCCTCTGTCTGCATTATCAAATACGGGATACTTAACAACCGTCTGAAATTTCACTATGATCTTCTAGGATTGGTTCTTTCTTTGTGGTAGTTTTCCACATATTTAATACAACATTTCTTGCTGCGTGAGGATTTGATTCTTTTGAAGTATTATGATTGAGTTAACTGGAATATAATCCAAAAAACAAATAATTCAGCTCAATGTTCAATGTGGTGGTTCACTATGACTCGAGATAAGTTCTACAATGTGACTCT</gDNA_template>
            <first_frame> A  R  C  S  P  T  N  C  D  S  H  Q  *  A  Q  Q  T  P  W  P  H  K  N  C  I  A  F  P  R  Y  E  L  R  L  *  K  S  V  E  K  L  R  D  L  T  E  I  E  N  E  *  Q  E  D  I  D  S  W  W  H  R  L  L  G  S  A  S  S  A  G  I  H  G  N  P  K  Y  S  S  I  C  S  L  V  S  L  Y  L  P  H  Q  S  P  T  *  A  P  T  G  S  H  S  S  C  P  T  L  S  C  R  F  T  N  R  Q  W  L  *  *  H  L  T  K  F  W  A   : V  Y  E  G  T  K  S  F  Y  K  E  D  D  E  T  L  P  V  N  V  Y  G  R  S  K  V  A  A  E  Q  F  I  S  A  N  Y  S  N  F  A  I  L  R  S  S  I  I  Y  G  P  Q  T  V  S  P  V  P  K  S  L  P  V  Q  :  W  M  D  S  V  L  A  K  G  E  A  M  D  F  F  H  D  E  F  R  C  P  V  Y  V  K  D  L  V  T  I  I  W  T  L  T  N  K  W  I  S  G  L  T  C  F  D  P  L  D  *  F  A  L  I  T  L  C  L  H  Y  Q  I  R  D  T  *  Q  P  S  E  I  S  L  *  S  S  R  I  G  S  F  F  V  V  V  F  H  I  F  N  T  T  F  L  A  A  *  G  F  D  S  F  E  V  L  *  L  S  *  L  E  Y  N  P  K  N  K  *  F  S  S  M  F  N  V  V  V  H  Y  D  S  R  *  V  L  Q  C  D  S </first_frame>
            <second_frame>  H  A  A  V  Q  R  T  V  T  L  I  S  R  H  S  K  L  L  G  P  I  K  T  A  L  L  F  Q  D  T  N  Y  D  C  R  N  Q  W  R  S  *  E  I  S  Q  K  L  K  M  S  S  K  K  I  L  I  V  G  G  T  G  Y  L  G  Q  H  L  L  Q  E  F  T  A  T  Q  N  T  L  P  Y  A  L  S  L  A  F  T  Y  H  T  N  P  P  P  E  R  L  L  E  A  I  P  H  A  L  P  F  H  V  D  L  R  T  G  N  G  F  D  D  I  S  Q  N  F  G  Q  :  F  T  K  G  P  N  P  S  T  R  K  M  M  R  P  F  L  *  M  F  M  E  D  Q  R  *  Q  Q  S  N  L  Y  L  Q  I  T  Q  I  L  Q  F  *  G  A  V  L  F  M  D  L  R  L  S  P  L  S  Q  N  H  F  Q  F  S :   G  W  I  V  F  L  Q  R  E  K  P  W  I  F  F  T  M  N  S  V  V  L  S  M  *  R  I  L  *  P  S  Y  G  P  *  Q  I  N  G  S  Q  V  *  H  A  L  T  L  *  T  D  L  P  *  S  P  S  V  C  I  I  K  Y  G  I  L  N  N  R  L  K  F  H  Y  D  L  L  G  L  V  L  S  L  W  *  F  S  T  Y  L  I  Q  H  F  L  L  R  E  D  L  I  L  L  K  Y  Y  D  *  V  N  W  N  I  I  Q  K  T  N  N  S  A  Q  C  S  M  W  W  F  T  M  T  R  D  K  F  Y  N  V  T   </second_frame>
            <third_frame>   T  L  Q  S  N  E  L  *  L  S  S  V  G  T  A  N  S  L  A  P  *  K  L  H  C  F  S  K  I  R  I  T  I  V  E  I  S  G  E  A  K  R  S  H  R  N  *  K  *  V  A  R  R  Y  *  *  L  V  A  Q  V  T  W  V  S  I  F  C  R  N  S  R  Q  P  K  I  L  F  H  M  L  S  R  *  P  L  P  T  T  P  I  P  H  L  S  A  Y  W  K  P  F  L  M  P  Y  P  F  M  *  I  Y  E  P  A  M  A  L  M  T  S  H  K  I  L  G  S :   L  R  R  D  Q  I  L  L  Q  G  R  *  *  D  P  S  C  E  C  L  W  K  I  K  G  S  S  R  A  I  Y  I  C  K  L  L  K  F  C  N  F  E  E  Q  Y  Y  L  W  T  S  D  C  L  P  C  P  K  I  T  S  S  S   : V  D  G  *  C  S  C  K  G  R  S  H  G  F  F  S  R  *  I  P  L  S  C  L  C  E  G  S  C  D  H  H  M  D  P  D  K  *  M  D  L  R  F  D  M  L  *  P  S  R  L  I  C  L  D  H  P  L  S  A  L  S  N  T  G  Y  L  T  T  V  *  N  F  T  M  I  F  *  D  W  F  F  L  C  G  S  F  P  H  I  *  Y  N  I  S  C  C  V  R  I  *  F  F  *  S  I  M  I  E  L  T  G  I  *  S  K  K  Q  I  I  Q  L  N  V  Q  C  G  G  S  L  *  L  E  I  S  S  T  M  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="847" stop="868"/>
                    <exon start="2898" stop="3085"/>
                    <exon start="3662" stop="3814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLTKFWAVYEGTKSFYKEDDETLPVNVYGRSKVAAEQFISANYSNFAILRSSIIYGPQTVSPVPKSLPVQWMDSVLAKGEAMDFFHDEFRCPVYVKDLVTIIWTLTNKWISGLTCFDPLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="614" stop="868"/>
                    <exon start="2898" stop="2951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EISQKLKMSSKKILIVGGTGYLGQHLLQEFTATQNTLPYALSLAFTYHTNPPPERLLEAIPHALPFHVDLRTGNGFDDISQNFGQFTKGPNPSTRKMMRPFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2897" e_stop="3085"/>
            <exon e_start="3662" e_stop="3785"/>
            <exon e_start="4227" e_stop="4357"/>
            <exon e_start="4570" e_stop="4818"/>
            <exon e_start="5034" e_stop="5043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.909" acc_prob="0.991" e_score="0.935"/>
          <exon-intron don_prob="0.285" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.657" e_score="0.992"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2897" e_stop="3085" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="3662" e_stop="3785" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4227" e_stop="4357" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="4570" e_stop="4818" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.657">
            <gDNA_intron_boundary i_start="4819" i_stop="5033" i_length="215"/>
          </intron>
          <exon e_serial="5" e_score="0.700">
            <gDNA_exon_boundary e_start="5034" e_stop="5043" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2897" stop="3085"/>
              <exon start="3662" stop="3785"/>
              <exon start="4227" stop="4357"/>
              <exon start="4570" stop="4757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4267" stop="4357"/>
              <exon start="4570" stop="4818"/>
              <exon start="5034" stop="5043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281210" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG : TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAG : AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT : GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAA : AAAGTTAAAA</gDNA_template>
            <first_frame> V  Y  E  G  T  K  S  F  Y  K  E  D  D  E  T  L  P  V  N  V  Y  G  R  S  K  V  A  A  E  Q  F  I  S  A  N  Y  S  N  F  A  I  L  R  S  S  I  I  Y  G  P  Q  T  V  S  P  V  P  K  S  L  P  V  Q  :  W  M  D  S  V  L  A  K  G  E  A  M  D  F  F  H  D  E  F  R  C  P  V  Y  V  K  D  L  V  T  I  I  W  T  L  T  N  K  W  I  S   : E  K  E  P  M  Q  L  L  L  N  V  G  G  P  D  R  V  S  R  V  Q  M  A  E  A  V  A  H  I  R  G  Y  N  L  S  L  I  K  S  V  S  S  S  T  :  V  N  R  G  V  K  S  P  A  D  I  S  M  D  T  N  R  L  I  Q  T  L  N  M  S  P  T  S  F  R  N  G  V  K  L  T  L  E  A  E  F  A  S  A  S  *  *  F  L  S  C  S  F  P  E  C  S  S  S  Y  V  F  V  L  S  N  Y  V  H  F  F  K  N  I  I  *  L  Q  N  L  S  K  E  :  K  V  K  </first_frame>
            <second_frame>  F  T  K  G  P  N  P  S  T  R  K  M  M  R  P  F  L  *  M  F  M  E  D  Q  R  *  Q  Q  S  N  L  Y  L  Q  I  T  Q  I  L  Q  F  *  G  A  V  L  F  M  D  L  R  L  S  P  L  S  Q  N  H  F  Q  F  S :   G  W  I  V  F  L  Q  R  E  K  P  W  I  F  F  T  M  N  S  V  V  L  S  M  *  R  I  L  *  P  S  Y  G  P  *  Q  I  N  G  S  Q  :  R  R  S  Q  C  S  Y  F  *  T  W  V  D  L  I  E  F  P  G  F  R  W  L  K  L  L  H  I  F  E  V  I  I  C  H  *  S  N  Q  Y  P  H  Q  L :   L  T  A  A  L  S  L  Q  Q  I  Y  P  W  I  P  T  D  *  F  R  H  S  I  C  H  Q  L  H  L  G  M  V  L  S  *  H  L  K  L  N  L  L  L  H  H  S  S  F  C  L  A  L  F  Q  N  A  H  L  H  M  Y  S  F  C  Q  I  M  F  I  F  S  K  I  *  F  D  F  R  I  Y  Q  K  K :   K  L  K </second_frame>
            <third_frame>   L  R  R  D  Q  I  L  L  Q  G  R  *  *  D  P  S  C  E  C  L  W  K  I  K  G  S  S  R  A  I  Y  I  C  K  L  L  K  F  C  N  F  E  E  Q  Y  Y  L  W  T  S  D  C  L  P  C  P  K  I  T  S  S  S   : V  D  G  *  C  S  C  K  G  R  S  H  G  F  F  S  R  *  I  P  L  S  C  L  C  E  G  S  C  D  H  H  M  D  P  D  K  *  M  D  L  R :   E  G  A  N  A  V  T  S  E  R  G  W  T  *  S  S  F  Q  G  S  D  G  *  S  C  C  T  Y  S  R  L  *  F  V  I  D  Q  I  S  I  L  I  N   : C  *  P  R  R  *  V  S  S  R  Y  I  H  G  Y  Q  Q  I  N  S  D  T  Q  Y  V  T  N  F  I  *  E  W  C  *  V  N  T  *  S  *  I  C  F  C  I  I  V  V  F  V  L  L  F  S  R  M  L  I  F  I  C  I  R  F  V  K  L  C  S  F  F  Q  K  Y  N  L  T  S  E  F  I  K  R   : K  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2897" stop="3085"/>
                    <exon start="3662" stop="3785"/>
                    <exon start="4227" stop="4357"/>
                    <exon start="4570" stop="4707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYEGTKSFYKEDDETLPVNVYGRSKVAAEQFISANYSNFAILRSSIIYGPQTVSPVPKSLPVQWMDSVLAKGEAMDFFHDEFRCPVYVKDLVTIIWTLTNKWISEKEPMQLLLNVGGPDRVSRVQMAEAVAHIRGYNLSLIKSVSSSTVNRGVKSPADISMDTNRLIQTLNMSPTSFRNGVKLTLEAEFASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2897" e_stop="3085"/>
            <exon e_start="3662" e_stop="3785"/>
            <exon e_start="4227" e_stop="4357"/>
            <exon e_start="4570" e_stop="4838"/>
            <exon e_start="5034" e_stop="5046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.909" acc_prob="0.991" e_score="0.935"/>
          <exon-intron don_prob="0.285" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.657" e_score="0.935"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2897" e_stop="3085" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="3662" e_stop="3785" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4227" e_stop="4357" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="4570" e_stop="4838" e_length="269"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.657">
            <gDNA_intron_boundary i_start="4839" i_stop="5033" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="0.692">
            <gDNA_exon_boundary e_start="5034" e_stop="5046" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2897" stop="3085"/>
              <exon start="3662" stop="3785"/>
              <exon start="4227" stop="4357"/>
              <exon start="4570" stop="4757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4838"/>
              <exon start="5034" stop="5046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4838"/>
              <exon start="5034" stop="5046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432365" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG : TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAG : AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT : GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAG : AAAGTTAAAACAA</gDNA_template>
            <first_frame> V  Y  E  G  T  K  S  F  Y  K  E  D  D  E  T  L  P  V  N  V  Y  G  R  S  K  V  A  A  E  Q  F  I  S  A  N  Y  S  N  F  A  I  L  R  S  S  I  I  Y  G  P  Q  T  V  S  P  V  P  K  S  L  P  V  Q  :  W  M  D  S  V  L  A  K  G  E  A  M  D  F  F  H  D  E  F  R  C  P  V  Y  V  K  D  L  V  T  I  I  W  T  L  T  N  K  W  I  S   : E  K  E  P  M  Q  L  L  L  N  V  G  G  P  D  R  V  S  R  V  Q  M  A  E  A  V  A  H  I  R  G  Y  N  L  S  L  I  K  S  V  S  S  S  T  :  V  N  R  G  V  K  S  P  A  D  I  S  M  D  T  N  R  L  I  Q  T  L  N  M  S  P  T  S  F  R  N  G  V  K  L  T  L  E  A  E  F  A  S  A  S  *  *  F  L  S  C  S  F  P  E  C  S  S  S  Y  V  F  V  L  S  N  Y  V  H  F  F  K  N  I  I  *  L  Q  N  L  S  K  E  F  G  P  S  H  S  R :   K  L  K  Q </first_frame>
            <second_frame>  F  T  K  G  P  N  P  S  T  R  K  M  M  R  P  F  L  *  M  F  M  E  D  Q  R  *  Q  Q  S  N  L  Y  L  Q  I  T  Q  I  L  Q  F  *  G  A  V  L  F  M  D  L  R  L  S  P  L  S  Q  N  H  F  Q  F  S :   G  W  I  V  F  L  Q  R  E  K  P  W  I  F  F  T  M  N  S  V  V  L  S  M  *  R  I  L  *  P  S  Y  G  P  *  Q  I  N  G  S  Q  :  R  R  S  Q  C  S  Y  F  *  T  W  V  D  L  I  E  F  P  G  F  R  W  L  K  L  L  H  I  F  E  V  I  I  C  H  *  S  N  Q  Y  P  H  Q  L :   L  T  A  A  L  S  L  Q  Q  I  Y  P  W  I  P  T  D  *  F  R  H  S  I  C  H  Q  L  H  L  G  M  V  L  S  *  H  L  K  L  N  L  L  L  H  H  S  S  F  C  L  A  L  F  Q  N  A  H  L  H  M  Y  S  F  C  Q  I  M  F  I  F  S  K  I  *  F  D  F  R  I  Y  Q  K  N  L  D  L  R  T  Q   : E  S  *  N   </second_frame>
            <third_frame>   L  R  R  D  Q  I  L  L  Q  G  R  *  *  D  P  S  C  E  C  L  W  K  I  K  G  S  S  R  A  I  Y  I  C  K  L  L  K  F  C  N  F  E  E  Q  Y  Y  L  W  T  S  D  C  L  P  C  P  K  I  T  S  S  S   : V  D  G  *  C  S  C  K  G  R  S  H  G  F  F  S  R  *  I  P  L  S  C  L  C  E  G  S  C  D  H  H  M  D  P  D  K  *  M  D  L  R :   E  G  A  N  A  V  T  S  E  R  G  W  T  *  S  S  F  Q  G  S  D  G  *  S  C  C  T  Y  S  R  L  *  F  V  I  D  Q  I  S  I  L  I  N   : C  *  P  R  R  *  V  S  S  R  Y  I  H  G  Y  Q  Q  I  N  S  D  T  Q  Y  V  T  N  F  I  *  E  W  C  *  V  N  T  *  S  *  I  C  F  C  I  I  V  V  F  V  L  L  F  S  R  M  L  I  F  I  C  I  R  F  V  K  L  C  S  F  F  Q  K  Y  N  L  T  S  E  F  I  K  R  I  W  T  F  A  L  K  :  K  V  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2897" stop="3085"/>
                    <exon start="3662" stop="3785"/>
                    <exon start="4227" stop="4357"/>
                    <exon start="4570" stop="4707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYEGTKSFYKEDDETLPVNVYGRSKVAAEQFISANYSNFAILRSSIIYGPQTVSPVPKSLPVQWMDSVLAKGEAMDFFHDEFRCPVYVKDLVTIIWTLTNKWISEKEPMQLLLNVGGPDRVSRVQMAEAVAHIRGYNLSLIKSVSSSTVNRGVKSPADISMDTNRLIQTLNMSPTSFRNGVKLTLEAEFASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="488" e_stop="868"/>
            <exon e_start="1453" e_stop="1612"/>
            <exon e_start="2898" e_stop="3085"/>
            <exon e_start="3662" e_stop="3785"/>
            <exon e_start="4227" e_stop="4357"/>
            <exon e_start="4570" e_stop="4844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.625" e_score="0.950"/>
          <exon-intron don_prob="0.677" acc_prob="0.926" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.909" acc_prob="0.991" e_score="0.992"/>
          <exon-intron don_prob="0.285" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="488" e_stop="868" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.625">
            <gDNA_intron_boundary i_start="869" i_stop="1452" i_length="584"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="1453" e_stop="1612" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.677" acc_prob="0.926">
            <gDNA_intron_boundary i_start="1613" i_stop="2897" i_length="1285"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="2898" e_stop="3085" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3086" i_stop="3661" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="3662" e_stop="3785" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3786" i_stop="4226" i_length="441"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4227" e_stop="4357" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.285" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4358" i_stop="4569" i_length="212"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="4570" e_stop="4844" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="488" stop="868"/>
              <exon start="1453" stop="1612"/>
              <exon start="2898" stop="3043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2967" stop="3085"/>
              <exon start="3662" stop="3785"/>
              <exon start="4227" stop="4357"/>
              <exon start="4570" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4357"/>
              <exon start="4570" stop="4817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432365" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCACGCTGCAGTCCAACGAACTGTGACTCTCATCAGTAGGCACAGCAAACTCCTTGGCCCCATAAAAACTGCATTGCTTTTCCAAGATACGAATTACGATTGTAGAAATCAGTGGAGAAGCTAAGAGATCTCACAGAAATTGAAAATGAGTAGCAAGAAGATATTGATAGTTGGTGGCACAGGTTACTTGGGTCAGCATCTTCTGCAGGAATTCACGGCAACCCAAAATACTCTTCCATATGCTCTCTCGTTAGCCTTTACCTACCACACCAATCCCCCACCTGAGCGCCTACTGGAAGCCATTCCTCATGCCCTACCCTTTCATGTAGATTTACGAACCGGCAATGGCTTTGATGACATCTCACAAAATTTTGGGCAG : CCTGATGTTGTGGTTAATTGTGCTGCACTTTCTGTTCCACGTGCCTGTGAAGTGGATCCTACTGCTGCCATGGCTATTAATGTGCCTTCTGCTCTTGTTAAGTGGTTGTCAAGTTTTAGCAATGGCGGTACTCTTCTGATTCACTTGTCTACTGATCAAG : TTTACGAAGGGACCAAATCCTTCTACAAGGAAGATGATGAGACCCTTCCTGTGAATGTTTATGGAAGATCAAAGGTAGCAGCAGAGCAATTTATATCTGCAAATTACTCAAATTTTGCAATTTTGAGGAGCAGTATTATTTATGGACCTCAGACTGTCTCCCCTGTCCCAAAATCACTTCCAGTTCAG : TGGATGGATAGTGTTCTTGCAAAGGGAGAAGCCATGGATTTTTTTCACGATGAATTCCGTTGTCCTGTCTATGTGAAGGATCTTGTGACCATCATATGGACCCTGACAAATAAATGGATCTCAG : AGAAGGAGCCAATGCAGTTACTTCTGAACGTGGGTGGACCTGATCGAGTTTCCAGGGTTCAGATGGCTGAAGCTGTTGCACATATTCGAGGTTATAATTTGTCATTGATCAAATCAGTATCCTCATCAACT : GTTAACCGCGGCGTTAAGTCTCCAGCAGATATATCCATGGATACCAACAGATTAATTCAGACACTCAATATGTCACCAACTTCATTTAGGAATGGTGTTAAGTTAACACTTGAAGCTGAATTTGCTTCTGCATCATAGTAGTTTTTGTCTTGCTCTTTTCCAGAATGCTCATCTTCATATGTATTCGTTTTGTCAAATTATGTTCATTTTTTCAAAAATATAATTTGACTTCAGAATTTATCAAAAGAATTTGGACCTTCGCACTCAAGGGCATG</gDNA_template>
            <first_frame> W  H  A  A  V  Q  R  T  V  T  L  I  S  R  H  S  K  L  L  G  P  I  K  T  A  L  L  F  Q  D  T  N  Y  D  C  R  N  Q  W  R  S  *  E  I  S  Q  K  L  K  M  S  S  K  K  I  L  I  V  G  G  T  G  Y  L  G  Q  H  L  L  Q  E  F  T  A  T  Q  N  T  L  P  Y  A  L  S  L  A  F  T  Y  H  T  N  P  P  P  E  R  L  L  E  A  I  P  H  A  L  P  F  H  V  D  L  R  T  G  N  G  F  D  D  I  S  Q  N  F  G  Q  :  P  D  V  V  V  N  C  A  A  L  S  V  P  R  A  C  E  V  D  P  T  A  A  M  A  I  N  V  P  S  A  L  V  K  W  L  S  S  F  S  N  G  G  T  L  L  I  H  L  S  T  D  Q   : V  Y  E  G  T  K  S  F  Y  K  E  D  D  E  T  L  P  V  N  V  Y  G  R  S  K  V  A  A  E  Q  F  I  S  A  N  Y  S  N  F  A  I  L  R  S  S  I  I  Y  G  P  Q  T  V  S  P  V  P  K  S  L  P  V  Q  :  W  M  D  S  V  L  A  K  G  E  A  M  D  F  F  H  D  E  F  R  C  P  V  Y  V  K  D  L  V  T  I  I  W  T  L  T  N  K  W  I  S   : E  K  E  P  M  Q  L  L  L  N  V  G  G  P  D  R  V  S  R  V  Q  M  A  E  A  V  A  H  I  R  G  Y  N  L  S  L  I  K  S  V  S  S  S  T  :  V  N  R  G  V  K  S  P  A  D  I  S  M  D  T  N  R  L  I  Q  T  L  N  M  S  P  T  S  F  R  N  G  V  K  L  T  L  E  A  E  F  A  S  A  S  *  *  F  L  S  C  S  F  P  E  C  S  S  S  Y  V  F  V  L  S  N  Y  V  H  F  F  K  N  I  I  *  L  Q  N  L  S  K  E  F  G  P  S  H  S  R  A   </first_frame>
            <second_frame>  G  T  L  Q  S  N  E  L  *  L  S  S  V  G  T  A  N  S  L  A  P  *  K  L  H  C  F  S  K  I  R  I  T  I  V  E  I  S  G  E  A  K  R  S  H  R  N  *  K  *  V  A  R  R  Y  *  *  L  V  A  Q  V  T  W  V  S  I  F  C  R  N  S  R  Q  P  K  I  L  F  H  M  L  S  R  *  P  L  P  T  T  P  I  P  H  L  S  A  Y  W  K  P  F  L  M  P  Y  P  F  M  *  I  Y  E  P  A  M  A  L  M  T  S  H  K  I  L  G  S :   L  M  L  W  L  I  V  L  H  F  L  F  H  V  P  V  K  W  I  L  L  L  P  W  L  L  M  C  L  L  L  L  L  S  G  C  Q  V  L  A  M  A  V  L  F  *  F  T  C  L  L  I  K  :  F  T  K  G  P  N  P  S  T  R  K  M  M  R  P  F  L  *  M  F  M  E  D  Q  R  *  Q  Q  S  N  L  Y  L  Q  I  T  Q  I  L  Q  F  *  G  A  V  L  F  M  D  L  R  L  S  P  L  S  Q  N  H  F  Q  F  S :   G  W  I  V  F  L  Q  R  E  K  P  W  I  F  F  T  M  N  S  V  V  L  S  M  *  R  I  L  *  P  S  Y  G  P  *  Q  I  N  G  S  Q  :  R  R  S  Q  C  S  Y  F  *  T  W  V  D  L  I  E  F  P  G  F  R  W  L  K  L  L  H  I  F  E  V  I  I  C  H  *  S  N  Q  Y  P  H  Q  L :   L  T  A  A  L  S  L  Q  Q  I  Y  P  W  I  P  T  D  *  F  R  H  S  I  C  H  Q  L  H  L  G  M  V  L  S  *  H  L  K  L  N  L  L  L  H  H  S  S  F  C  L  A  L  F  Q  N  A  H  L  H  M  Y  S  F  C  Q  I  M  F  I  F  S  K  I  *  F  D  F  R  I  Y  Q  K  N  L  D  L  R  T  Q  G  H  </second_frame>
            <third_frame>   A  R  C  S  P  T  N  C  D  S  H  Q  *  A  Q  Q  T  P  W  P  H  K  N  C  I  A  F  P  R  Y  E  L  R  L  *  K  S  V  E  K  L  R  D  L  T  E  I  E  N  E  *  Q  E  D  I  D  S  W  W  H  R  L  L  G  S  A  S  S  A  G  I  H  G  N  P  K  Y  S  S  I  C  S  L  V  S  L  Y  L  P  H  Q  S  P  T  *  A  P  T  G  S  H  S  S  C  P  T  L  S  C  R  F  T  N  R  Q  W  L  *  *  H  L  T  K  F  W  A   : A  *  C  C  G  *  L  C  C  T  F  C  S  T  C  L  *  S  G  S  Y  C  C  H  G  Y  *  C  A  F  C  S  C  *  V  V  V  K  F  *  Q  W  R  Y  S  S  D  S  L  V  Y  *  S  S :   L  R  R  D  Q  I  L  L  Q  G  R  *  *  D  P  S  C  E  C  L  W  K  I  K  G  S  S  R  A  I  Y  I  C  K  L  L  K  F  C  N  F  E  E  Q  Y  Y  L  W  T  S  D  C  L  P  C  P  K  I  T  S  S  S   : V  D  G  *  C  S  C  K  G  R  S  H  G  F  F  S  R  *  I  P  L  S  C  L  C  E  G  S  C  D  H  H  M  D  P  D  K  *  M  D  L  R :   E  G  A  N  A  V  T  S  E  R  G  W  T  *  S  S  F  Q  G  S  D  G  *  S  C  C  T  Y  S  R  L  *  F  V  I  D  Q  I  S  I  L  I  N   : C  *  P  R  R  *  V  S  S  R  Y  I  H  G  Y  Q  Q  I  N  S  D  T  Q  Y  V  T  N  F  I  *  E  W  C  *  V  N  T  *  S  *  I  C  F  C  I  I  V  V  F  V  L  L  F  S  R  M  L  I  F  I  C  I  R  F  V  K  L  C  S  F  F  Q  K  Y  N  L  T  S  E  F  I  K  R  I  W  T  F  A  L  K  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="614" stop="868"/>
                    <exon start="1453" stop="1612"/>
                    <exon start="2898" stop="3085"/>
                    <exon start="3662" stop="3785"/>
                    <exon start="4227" stop="4357"/>
                    <exon start="4570" stop="4707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EISQKLKMSSKKILIVGGTGYLGQHLLQEFTATQNTLPYALSLAFTYHTNPPPERLLEAIPHALPFHVDLRTGNGFDDISQNFGQPDVVVNCAALSVPRACEVDPTAAMAINVPSALVKWLSSFSNGGTLLIHLSTDQVYEGTKSFYKEDDETLPVNVYGRSKVAAEQFISANYSNFAILRSSIIYGPQTVSPVPKSLPVQWMDSVLAKGEAMDFFHDEFRCPVYVKDLVTIIWTLTNKWISEKEPMQLLLNVGGPDRVSRVQMAEAVAHIRGYNLSLIKSVSSSTVNRGVKSPADISMDTNRLIQTLNMSPTSFRNGVKLTLEAEFASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="851" PGL_stop="490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="851" e_stop="490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="851" e_stop="490" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="851" stop="490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGTCATCAAAGCCATTGCCGGTTCGTAAATCTACATGAAAGGGTAGGGCATGAGGAATGGCTTCCAGTAGGCGCTCAGGTGGGGGATTGGTGTGGTAGGTAAAGGCTAACGAGAGAGCATATGGAAGAGTATTTTGGGTTGCCGTGAATTCCTGCAGAAGATGCTGACCCAAGTAACCTGTGCCACCAACTATCAATATCTTCTTGCTACTCATTTTCAATTTCTGTGAGATCTCTTAGCTTCTCCACTGATTTCTACAATCGTAATTCGTATCTTGGAAAAGCAATGCAGTTTTTATGGGGCCAAGGAGTTTGCTGTGCCTACTGATGAGAGTCACAGTTCGTTGGACTGCAGCGTGC</gDNA_template>
            <first_frame> R  C  H  Q  S  H  C  R  F  V  N  L  H  E  R  V  G  H  E  E  W  L  P  V  G  A  Q  V  G  D  W  C  G  R  *  R  L  T  R  E  H  M  E  E  Y  F  G  L  P  *  I  P  A  E  D  A  D  P  S  N  L  C  H  Q  L  S  I  S  S  C  Y  S  F  S  I  S  V  R  S  L  S  F  S  T  D  F  Y  N  R  N  S  Y  L  G  K  A  M  Q  F  L  W  G  Q  G  V  C  C  A  Y  *  *  E  S  Q  F  V  G  L  Q  R   </first_frame>
            <second_frame>  D  V  I  K  A  I  A  G  S  *  I  Y  M  K  G  *  G  M  R  N  G  F  Q  *  A  L  R  W  G  I  G  V  V  G  K  G  *  R  E  S  I  W  K  S  I  L  G  C  R  E  F  L  Q  K  M  L  T  Q  V  T  C  A  T  N  Y  Q  Y  L  L  A  T  H  F  Q  F  L  *  D  L  L  A  S  P  L  I  S  T  I  V  I  R  I  L  E  K  Q  C  S  F  Y  G  A  K  E  F  A  V  P  T  D  E  S  H  S  S  L  D  C  S  V  </second_frame>
            <third_frame>   M  S  S  K  P  L  P  V  R  K  S  T  *  K  G  R  A  *  G  M  A  S  S  R  R  S  G  G  G  L  V  W  *  V  K  A  N  E  R  A  Y  G  R  V  F  W  V  A  V  N  S  C  R  R  C  *  P  K  *  P  V  P  P  T  I  N  I  F  L  L  L  I  F  N  F  C  E  I  S  *  L  L  H  *  F  L  Q  S  *  F  V  S  W  K  S  N  A  V  F  M  G  P  R  S  L  L  C  L  L  M  R  V  T  V  R  W  T  A  A  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0182E16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8154" PGL_stop="21417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8214" e_stop="8456"/>
            <exon e_start="9722" e_stop="9818"/>
            <exon e_start="11619" e_stop="11737"/>
            <exon e_start="11836" e_stop="12003"/>
            <exon e_start="13147" e_stop="13275"/>
            <exon e_start="13752" e_stop="13812"/>
            <exon e_start="14530" e_stop="14633"/>
            <exon e_start="14711" e_stop="14794"/>
            <exon e_start="14906" e_stop="15012"/>
            <exon e_start="15135" e_stop="15228"/>
            <exon e_start="15541" e_stop="15654"/>
            <exon e_start="15838" e_stop="15903"/>
            <exon e_start="16600" e_stop="16672"/>
            <exon e_start="16756" e_stop="16842"/>
            <exon e_start="17010" e_stop="17064"/>
            <exon e_start="17140" e_stop="17211"/>
            <exon e_start="17369" e_stop="17431"/>
            <exon e_start="18246" e_stop="18360"/>
            <exon e_start="18480" e_stop="18945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.747" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.733" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.898" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.568" e_score="1.000"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8214" e_stop="8456" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9722" e_stop="9818" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.747" acc_prob="0.788">
            <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11619" e_stop="11737" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.733" acc_prob="0.941">
            <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11836" e_stop="12003" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="13147" e_stop="13275" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13276" i_stop="13751" i_length="476"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13752" e_stop="13812" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.546">
            <gDNA_intron_boundary i_start="13813" i_stop="14529" i_length="717"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14530" e_stop="14633" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.804">
            <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14711" e_stop="14794" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.945" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14906" e_stop="15012" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15135" e_stop="15228" e_length="94"/>
          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15541" e_stop="15654" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.419" acc_prob="0.940">
            <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15838" e_stop="15903" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16600" e_stop="16672" e_length="73"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="16756" e_stop="16842" e_length="87"/>
          </exon>
          <intron i_serial="14" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="17010" e_stop="17064" e_length="55"/>
          </exon>
          <intron i_serial="15" don_prob="0.910" acc_prob="0.980">
            <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="17140" e_stop="17211" e_length="72"/>
          </exon>
          <intron i_serial="16" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="17369" e_stop="17431" e_length="63"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="18246" e_stop="18360" e_length="115"/>
          </exon>
          <intron i_serial="18" don_prob="0.989" acc_prob="0.568">
            <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119"/>
          </intron>
          <exon e_serial="19" e_score="0.897">
            <gDNA_exon_boundary e_start="18480" e_stop="18945" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8214" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8238" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8239" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8241" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8244" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="11989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8246" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13275"/>
              <exon start="13752" stop="13812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8258" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13275"/>
              <exon start="13752" stop="13812"/>
              <exon start="14530" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13752" stop="13812"/>
              <exon start="14530" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13761" stop="13812"/>
              <exon start="14530" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14630" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14996" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15148" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15563" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16614" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16764" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16798" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18300" stop="18360"/>
              <exon start="18480" stop="18945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTCACATATTCATGGAGTTGTAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG : GACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA : TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA : GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG : GTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA : GTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTT : ATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG : TTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG : GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG : TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT : GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG : GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG : GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG : CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG : GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG : CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG : CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA : TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG : GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTGGCTCGAAGGAAATCGGCACAGAACGGAAAA</gDNA_template>
            <first_frame> T  L  S  H  I  H  G  V  V  V  F  F  I  F  N  S  I  L  S  F  S  D  S  I  F  T  R  F  F  F  I  Y  L  Y  K  E  R  A  M  W  R  V  A  R  S  A  A  S  T  F  R  R  T  R  R  L  S  T  A  I  S  A  P  C  I  V  H  K  R  G  A  D  I  L  H  D  P  W  F  N  K  :  D  T  G  F  P  M  T  E  R  D  R  L  G  L  R  G  L  L  P  P  R  V  I  S  F  E  Q  Q  Y  D  R  F   : M  E  S  F  R  S  L  E  K  N  T  E  G  Q  P  E  S  V  V  S  L  A  K  W  R  I  L  N  R  L  H  D  R  N  E  T  L  Y  Y  R  :  V  L  I  D  N  I  K  D  F  A  P  I  I  Y  T  P  T  V  G  L  V  C  Q  N  Y  S  G  L  F  R  R  P  R  G  M  Y  F  S  A  K  D  K  G  E  M  M  S  M  I  F  N  W  P  S  T  Q  :  V  D  M  I  V  L  T  D  G  S  R  I  L  G  L  G  D  L  G  V  Q  G  I  G  I  P  I  G  K  L  D  M  Y  V  A  A  A  G  I  N  P  Q  R  :  V  L  P  V  M  L  D  V  G  T  N  N  Q  K  L  L  E  D  P  L   : Y  L  G  L  R  Q  P  R  L  E  G  E  E  Y  L  S  I  V  D  E  F  V  E  A  V  H  A  R  W  P  K  A  V  V  Q  :  F  E  D  F  Q  A  K  W  A  F  E  T  L  D  R  Y  R  K  K  F  C  M  F  N  D  D  I  Q  :  G  T  A  G  V  A  L  A  G  L  L  G  T  V  R  A  Q  G  R  P  L  T  D  F  A  N  Q  K  I  V  V  V  G  A  G  S :   A  G  L  G  V  L  K  M  A  L  Q  A  V  S  R  M  A  G  P  S  A  D  P  H  F  F  L  L  D  K  N  :  G  L  I  T  K  D  R  K  D  I  D  P  A  A  L  P  F  A  K  A  H  H  E  I  E  G  L  G  L  Q  E  G  A  G  L  A  E  V  :  V  K  K  V  K  P  H  V  L  L  G  L  S  G  V  G  G  I  F  H  E  E  :  V  L  R  A  M  K  E  S  D  S  V  R  P  A  I  F  A  M  S  N  P  T  N  N   : A  E  C  C  P  V  D  A  F  K  L  A  G  E  D  I  V  F  A  S  G  S  P  F  A  N  V  D  L   : G  N  G  K  I  G  H  V  N  Q  A  N  N  M  Y  L  F  P  G :   I  G  L  G  A  L  L  S  G  A  R  N  I  S  D  T  M  L  E  A  A  A  E  C :   L  A  S  Y  M  S  D  D  E  I  N  R  G  I  L  Y  P  S  I  D  D :   I  R  D  I  T  A  E  V  G  A  A  V  L  R  A  A  V  A  E  D  L  A  E  G  H  G  D  V  G  V  R  E  L  Q  H  M  S  K  :  E  E  T  I  E  H  V  R  E  N  M  W  Y  P  V  Y  G  P  L  V  H  E  *  *  S  T  S  W  V  E  I  T  G  P  R  E  V  E  Y  G  L  V  L  Q  I  A  C  K  G  Q  K  V  S  Q  T  *  L  Y  *  V  Y  N  Y  K  D  K  C  C  *  T  T  K  E  S  R  A  L  Q  I  F  H  F  F  V  V  S  H  S  C  L  S  H  E  A  Y  V  T  F  K  L  R  S  R  R  C  I  C  Y  P  *  I  K  A  D  T  F  S  Q  Q  H  R  L  L  N  C  I  H  F  L  W  F  F  L  L  K  M  K  *  H  L  K  Q  F  D  F  G  S  K  E  I  G  T  E  R  K  </first_frame>
            <second_frame>  L  F  H  I  F  M  E  L  *  C  S  S  S  S  T  Q  F  *  V  F  L  I  Q  F  L  L  V  F  F  L  F  I  C  I  R  S  V  Q  C  G  E  W  L  D  L  R  R  R  L  S  A  V  R  G  G  Y  R  R  R  F  Q  L  H  V  S  Y  T  S  A  V  L  I  F  F  M  I  L  G  S  I  R :   T  Q  D  S  Q  *  Q  K  E  I  D  W  V  C  A  V  S  S  H  L  V  *  Y  H  L  N  S  N  M  T  A  S  :  W  S  H  F  G  H  L  R  K  I  L  R  V  N  Q  K  V  L  S  R  *  Q  N  G  G  S  *  T  G  C  M  T  G  M  R  H  C  T  T  E :   F  *  L  T  I  S  K  I  L  L  P  *  Y  T  L  Q  Q  *  D  W  F  A  K  T  T  L  A  C  L  D  V  H  V  A  C  I  S  V  P  K  I  R  E  R  *  C  Q  *  S  S  T  G  L  P  L  R :   *  T  *  L  S  *  Q  M  E  V  V  F  L  A  L  A  I  L  E  F  R  G  *  V  Y  Q  L  E  N  L  T  C  M  *  Q  L  L  V  S  T  H  K  E :   C  S  Q  L  C  L  M  S  G  Q  T  I  R  S  F  *  K  I  L  F  :  I  L  D  C  D  N  L  G  W  K  G  K  N  I  C  Q  *  L  M  N  L  W  K  L  F  M  L  V  G  Q  R  L  L  C  S :   L  R  I  F  K  Q  S  G  L  L  R  R  W  I  A  I  G  K  S  F  A  C  S  M  M  I  Y  R :   E  Q  L  V  L  L  L  L  G  Y  *  E  L  L  G  H  R  A  G  H  *  L  I  L  P  T  K  R  *  W  *  L  E  Q  E   : V  R  G  L  V  F  L  R  W  H  Y  K  P  F  Q  E  W  L  D  H  Q  Q  I  P  T  F  F  F  W  I  K  M :   V  L  S  Q  R  I  G  K  I  L  I  Q  Q  H  Y  H  L  L  K  P  I  T  R  L  R  G  *  D  Y  R  R  E  Q  D  L  L  K  W :   S  K  R  *  S  L  M  Y  F  L  V  C  Q  E  L  E  A  Y  F  M  R  R :   C  *  G  P  *  K  S  Q  I  L  L  D  L  Q  F  L  P  C  Q  I  L  Q  T  M  :  L  N  A  V  L  L  M  L  S  S  L  L  E  K  I  L  F  L  L  V  G  V  P  L  Q  M  L  I  *  :  G  M  V  R  *  A  M  *  I  K  R  I  T  C  I  S  S  L   : A  *  G  W  E  L  F  F  L  A  L  E  T  *  V  I  Q  C  *  K  L  L  L  S   : A  S  L  L  T  C  P  M  T  K  S  I  E  E  S  C  I  H  P  L  T   : I  F  G  I  L  Q  Q  R  W  E  L  L  F  Y  G  L  L  W  L  K  T  W  Q  K  V  T  V  T  L  E  *  E  S  C  S  I  C  Q  R :   K  R  P  L  N  T  *  E  K  I  C  G  I  L  S  M  A  L  L  F  T  N  S  E  A  L  P  G  L  R  S  Q  V  H  E  K  W  S  M  V  W  C  S  K  L  P  V  K  V  K  K  F  H  K  L  D  C  I  R  C  T  I  T  R  T  N  V  A  E  P  R  K  S  L  G  L  F  K  Y  F  I  F  L  L  *  A  I  L  V  Y  L  M  K  H  M  *  P  L  N  *  G  V  G  D  V  F  V  I  P  E  *  K  L  I  L  S  L  S  S  T  A  Y  *  T  V  F  I  F  C  G  F  F  F  L  K  *  N  S  I  *  N  N  L  I  L  A  R  R  K  S  A  Q  N  G  K </second_frame>
            <third_frame>   S  F  T  Y  S  W  S  C  S  V  L  H  L  Q  L  N  S  K  F  F  *  F  N  F  Y  S  F  F  F  Y  L  F  V  *  G  A  C  N  V  E  S  G  S  I  C  G  V  D  F  P  P  Y  A  A  V  I  D  G  D  F  S  S  M  Y  R  T  Q  A  R  C  *  Y  S  S  *  S  L  V  Q  *   : G  H  R  I  P  N  D  R  K  R  S  I  G  S  A  R  S  P  P  T  S  C  N  I  I  *  T  A  I  *  P  L  H :   G  V  I  S  V  T  *  E  K  Y  *  G  S  T  R  K  C  C  L  V  S  K  M  E  D  L  K  Q  A  A  *  Q  E  *  D  T  V  L  P   : S  S  N  *  Q  Y  Q  R  F  C  S  H  N  I  H  S  N  S  R  I  G  L  P  K  L  L  W  L  V  *  T  S  T  W  H  V  F  Q  C  Q  R  *  G  R  D  D  V  N  D  L  Q  L  A  F  H  S   : G  R  H  D  C  P  D  R  W  K  S  Y  S  W  P  W  R  S  W  S  S  G  D  R  Y  T  N  W  K  T  *  H  V  C  S  S  C  W  Y  Q  P  T  K   : S  A  P  S  Y  A  *  C  R  D  K  Q  S  E  A  S  R  R  S  S  L :   S  W  T  A  T  T  *  V  G  R  G  R  I  F  V  N  S  *  *  I  C  G  S  C  S  C  S  L  A  K  G  C  C  A   : V  *  G  F  S  S  K  V  G  F  *  D  A  G  S  L  S  E  K  V  L  H  V  Q  *  *  Y  T   : G  N  S  W  C  C  S  C  W  A  I  R  N  C  *  G  T  G  P  A  T  D  *  F  C  Q  P  K  D  S  G  S  W  S  R  K  :  C  G  A  W  C  S  *  D  G  I  T  S  R  F  K  N  G  W  T  I  S  R  S  P  L  F  S  S  G  *  K   : W  S  Y  H  K  G  *  E  R  Y  *  S  S  S  I  T  I  C  *  S  P  S  R  D  *  G  A  R  T  T  G  G  S  R  T  C  *  S   : G  Q  K  G  E  A  S  C  T  S  W  F  V  R  S  W  R  H  I  S  *  G   : G  A  E  G  H  E  R  V  R  F  C  *  T  C  N  F  C  H  V  K  S  Y  K  Q  C :   *  M  L  S  C  *  C  F  Q  A  C  W  R  R  Y  C  F  C  *  W  E  S  L  C  K  C  *  S  R :   E  W  *  D  R  P  C  K  S  S  E  *  H  V  S  L  P  W  :  H  R  A  G  S  S  S  F  W  R  S  K  H  K  *  Y  N  V  R  S  C  C  *  V  :  P  R  F  L  H  V  R  *  R  N  Q  *  R  N  L  V  S  I  H  *  R  :  Y  S  G  Y  Y  S  R  G  G  S  C  C  F  T  G  C  C  G  *  R  P  G  R  R  S  R  *  R  W  S  E  R  V  A  A  Y  V  K   : G  R  D  H  *  T  R  E  R  K  Y  V  V  S  C  L  W  P  S  C  S  R  I  V  K  H  F  L  G  *  D  H  R  S  T  R  S  G  V  W  S  G  A  P  N  C  L  *  R  S  K  S  F  T  N  L  T  V  L  G  V  Q  L  Q  G  Q  M  L  L  N  H  E  R  V  *  G  S  S  N  I  S  F  F  C  C  K  P  F  L  F  I  S  *  S  I  C  N  L  *  I  E  E  *  E  M  Y  L  L  S  L  N  K  S  *  Y  F  L  S  A  A  P  P  I  E  L  Y  S  F  F  V  V  F  S  S  *  N  E  I  A  F  E  T  I  *  F  W  L  E  G  N  R  H  R  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8214" stop="8456"/>
                    <exon start="9722" stop="9818"/>
                    <exon start="11619" stop="11737"/>
                    <exon start="11836" stop="12003"/>
                    <exon start="13147" stop="13275"/>
                    <exon start="13752" stop="13812"/>
                    <exon start="14530" stop="14633"/>
                    <exon start="14711" stop="14794"/>
                    <exon start="14906" stop="15012"/>
                    <exon start="15135" stop="15228"/>
                    <exon start="15541" stop="15654"/>
                    <exon start="15838" stop="15903"/>
                    <exon start="16600" stop="16672"/>
                    <exon start="16756" stop="16842"/>
                    <exon start="17010" stop="17064"/>
                    <exon start="17140" stop="17211"/>
                    <exon start="17369" stop="17431"/>
                    <exon start="18246" stop="18360"/>
                    <exon start="18480" stop="18548"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1917</number_coding_nucleotides>
                  <number_encoded_amino_acids>639</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSHIHGVVVFFIFNSILSFSDSIFTRFFFIYLYKERAMWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGLLPPRVISFEQQYDRFMESFRSLEKNTEGQPESVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLSIVDEFVEAVHARWPKAVVQFEDFQAKWAFETLDRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLTDFANQKIVVVGAGSAGLGVLKMALQAVSRMAGPSADPHFFLLDKNGLITKDRKDIDPAALPFAKAHHEIEGLGLQEGAGLAEVVKKVKPHVLLGLSGVGGIFHEEVLRAMKESDSVRPAIFAMSNPTNNAECCPVDAFKLAGEDIVFASGSPFANVDLGNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDDEINRGILYPSIDDIRDITAEVGAAVLRAAVAEDLAEGHGDVGVRELQHMSKEETIEHVRENMWYPVYGPLVHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8214" e_stop="8456"/>
            <exon e_start="9722" e_stop="9818"/>
            <exon e_start="11619" e_stop="11737"/>
            <exon e_start="11836" e_stop="12003"/>
            <exon e_start="13147" e_stop="13275"/>
            <exon e_start="13752" e_stop="13812"/>
            <exon e_start="14530" e_stop="14633"/>
            <exon e_start="14711" e_stop="14794"/>
            <exon e_start="14906" e_stop="15012"/>
            <exon e_start="15135" e_stop="15228"/>
            <exon e_start="15541" e_stop="15654"/>
            <exon e_start="15838" e_stop="15903"/>
            <exon e_start="16600" e_stop="16672"/>
            <exon e_start="16756" e_stop="16842"/>
            <exon e_start="17010" e_stop="17064"/>
            <exon e_start="17140" e_stop="17211"/>
            <exon e_start="17369" e_stop="17431"/>
            <exon e_start="18246" e_stop="18360"/>
            <exon e_start="18480" e_stop="18868"/>
            <exon e_start="19968" e_stop="19996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.747" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.733" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.898" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8214" e_stop="8456" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9722" e_stop="9818" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.747" acc_prob="0.788">
            <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11619" e_stop="11737" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.733" acc_prob="0.941">
            <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11836" e_stop="12003" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="13147" e_stop="13275" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13276" i_stop="13751" i_length="476"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13752" e_stop="13812" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.546">
            <gDNA_intron_boundary i_start="13813" i_stop="14529" i_length="717"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14530" e_stop="14633" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.804">
            <gDNA_intron_boundary i_start="14634" i_stop="14710" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14711" e_stop="14794" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.945" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14906" e_stop="15012" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15135" e_stop="15228" e_length="94"/>
          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15541" e_stop="15654" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.419" acc_prob="0.940">
            <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15838" e_stop="15903" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16600" e_stop="16672" e_length="73"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="16756" e_stop="16842" e_length="87"/>
          </exon>
          <intron i_serial="14" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="17010" e_stop="17064" e_length="55"/>
          </exon>
          <intron i_serial="15" don_prob="0.910" acc_prob="0.980">
            <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="17140" e_stop="17211" e_length="72"/>
          </exon>
          <intron i_serial="16" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="17369" e_stop="17431" e_length="63"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="18246" e_stop="18360" e_length="115"/>
          </exon>
          <intron i_serial="18" don_prob="0.989" acc_prob="0.568">
            <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119"/>
          </intron>
          <exon e_serial="19" e_score="0.938">
            <gDNA_exon_boundary e_start="18480" e_stop="18868" e_length="389"/>
          </exon>
          <intron i_serial="19" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18869" i_stop="19967" i_length="1099"/>
          </intron>
          <exon e_serial="20" e_score="0.931">
            <gDNA_exon_boundary e_start="19968" e_stop="19996" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8214" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8238" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8239" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8241" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8244" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="11989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8246" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13275"/>
              <exon start="13752" stop="13812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13752" stop="13812"/>
              <exon start="14530" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13761" stop="13812"/>
              <exon start="14530" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14630" stop="14633"/>
              <exon start="14711" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14996" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15148" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15563" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16614" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16764" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16765" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18868"/>
              <exon start="19968" stop="19996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTCACATATTCATGGAGTTGTAGTGTTCTTCATCTTCAACTCAATTCTAAGTTTTTCTGATTCAATTTTTACTCGTTTTTTTTTTATTTATTTGTATAAGGAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG : GACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA : TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA : GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG : GTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA : GTGCTCCCAGTTATGCTTGATGTCGGGACAAACAATCAGAAGCTTCTAGAAGATCCTCTTT : ATCTTGGACTGCGACAACCTAGGTTGGAAGGGGAAGAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG : TTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG : GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG : TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT : GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG : GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG : GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG : CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG : GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG : CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG : CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA : TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG : GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTG : CTAAAAAAAAAAAAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> T  L  S  H  I  H  G  V  V  V  F  F  I  F  N  S  I  L  S  F  S  D  S  I  F  T  R  F  F  F  I  Y  L  Y  K  E  R  A  M  W  R  V  A  R  S  A  A  S  T  F  R  R  T  R  R  L  S  T  A  I  S  A  P  C  I  V  H  K  R  G  A  D  I  L  H  D  P  W  F  N  K  :  D  T  G  F  P  M  T  E  R  D  R  L  G  L  R  G  L  L  P  P  R  V  I  S  F  E  Q  Q  Y  D  R  F   : M  E  S  F  R  S  L  E  K  N  T  E  G  Q  P  E  S  V  V  S  L  A  K  W  R  I  L  N  R  L  H  D  R  N  E  T  L  Y  Y  R  :  V  L  I  D  N  I  K  D  F  A  P  I  I  Y  T  P  T  V  G  L  V  C  Q  N  Y  S  G  L  F  R  R  P  R  G  M  Y  F  S  A  K  D  K  G  E  M  M  S  M  I  F  N  W  P  S  T  Q  :  V  D  M  I  V  L  T  D  G  S  R  I  L  G  L  G  D  L  G  V  Q  G  I  G  I  P  I  G  K  L  D  M  Y  V  A  A  A  G  I  N  P  Q  R  :  V  L  P  V  M  L  D  V  G  T  N  N  Q  K  L  L  E  D  P  L   : Y  L  G  L  R  Q  P  R  L  E  G  E  E  Y  L  S  I  V  D  E  F  V  E  A  V  H  A  R  W  P  K  A  V  V  Q  :  F  E  D  F  Q  A  K  W  A  F  E  T  L  D  R  Y  R  K  K  F  C  M  F  N  D  D  I  Q  :  G  T  A  G  V  A  L  A  G  L  L  G  T  V  R  A  Q  G  R  P  L  T  D  F  A  N  Q  K  I  V  V  V  G  A  G  S :   A  G  L  G  V  L  K  M  A  L  Q  A  V  S  R  M  A  G  P  S  A  D  P  H  F  F  L  L  D  K  N  :  G  L  I  T  K  D  R  K  D  I  D  P  A  A  L  P  F  A  K  A  H  H  E  I  E  G  L  G  L  Q  E  G  A  G  L  A  E  V  :  V  K  K  V  K  P  H  V  L  L  G  L  S  G  V  G  G  I  F  H  E  E  :  V  L  R  A  M  K  E  S  D  S  V  R  P  A  I  F  A  M  S  N  P  T  N  N   : A  E  C  C  P  V  D  A  F  K  L  A  G  E  D  I  V  F  A  S  G  S  P  F  A  N  V  D  L   : G  N  G  K  I  G  H  V  N  Q  A  N  N  M  Y  L  F  P  G :   I  G  L  G  A  L  L  S  G  A  R  N  I  S  D  T  M  L  E  A  A  A  E  C :   L  A  S  Y  M  S  D  D  E  I  N  R  G  I  L  Y  P  S  I  D  D :   I  R  D  I  T  A  E  V  G  A  A  V  L  R  A  A  V  A  E  D  L  A  E  G  H  G  D  V  G  V  R  E  L  Q  H  M  S  K  :  E  E  T  I  E  H  V  R  E  N  M  W  Y  P  V  Y  G  P  L  V  H  E  *  *  S  T  S  W  V  E  I  T  G  P  R  E  V  E  Y  G  L  V  L  Q  I  A  C  K  G  Q  K  V  S  Q  T  *  L  Y  *  V  Y  N  Y  K  D  K  C  C  *  T  T  K  E  S  R  A  L  Q  I  F  H  F  F  V  V  S  H  S  C  L  S  H  E  A  Y  V  T  F  K  L  R  S  R  R  C  I  C  Y  P  *  I  K  A  D  T  F  S  Q  Q  H  R  L  L  N  C  I  H  F  L  C :   *  K  K  K  K  K  K  K  K  </first_frame>
            <second_frame>  L  F  H  I  F  M  E  L  *  C  S  S  S  S  T  Q  F  *  V  F  L  I  Q  F  L  L  V  F  F  L  F  I  C  I  R  S  V  Q  C  G  E  W  L  D  L  R  R  R  L  S  A  V  R  G  G  Y  R  R  R  F  Q  L  H  V  S  Y  T  S  A  V  L  I  F  F  M  I  L  G  S  I  R :   T  Q  D  S  Q  *  Q  K  E  I  D  W  V  C  A  V  S  S  H  L  V  *  Y  H  L  N  S  N  M  T  A  S  :  W  S  H  F  G  H  L  R  K  I  L  R  V  N  Q  K  V  L  S  R  *  Q  N  G  G  S  *  T  G  C  M  T  G  M  R  H  C  T  T  E :   F  *  L  T  I  S  K  I  L  L  P  *  Y  T  L  Q  Q  *  D  W  F  A  K  T  T  L  A  C  L  D  V  H  V  A  C  I  S  V  P  K  I  R  E  R  *  C  Q  *  S  S  T  G  L  P  L  R :   *  T  *  L  S  *  Q  M  E  V  V  F  L  A  L  A  I  L  E  F  R  G  *  V  Y  Q  L  E  N  L  T  C  M  *  Q  L  L  V  S  T  H  K  E :   C  S  Q  L  C  L  M  S  G  Q  T  I  R  S  F  *  K  I  L  F  :  I  L  D  C  D  N  L  G  W  K  G  K  N  I  C  Q  *  L  M  N  L  W  K  L  F  M  L  V  G  Q  R  L  L  C  S :   L  R  I  F  K  Q  S  G  L  L  R  R  W  I  A  I  G  K  S  F  A  C  S  M  M  I  Y  R :   E  Q  L  V  L  L  L  L  G  Y  *  E  L  L  G  H  R  A  G  H  *  L  I  L  P  T  K  R  *  W  *  L  E  Q  E   : V  R  G  L  V  F  L  R  W  H  Y  K  P  F  Q  E  W  L  D  H  Q  Q  I  P  T  F  F  F  W  I  K  M :   V  L  S  Q  R  I  G  K  I  L  I  Q  Q  H  Y  H  L  L  K  P  I  T  R  L  R  G  *  D  Y  R  R  E  Q  D  L  L  K  W :   S  K  R  *  S  L  M  Y  F  L  V  C  Q  E  L  E  A  Y  F  M  R  R :   C  *  G  P  *  K  S  Q  I  L  L  D  L  Q  F  L  P  C  Q  I  L  Q  T  M  :  L  N  A  V  L  L  M  L  S  S  L  L  E  K  I  L  F  L  L  V  G  V  P  L  Q  M  L  I  *  :  G  M  V  R  *  A  M  *  I  K  R  I  T  C  I  S  S  L   : A  *  G  W  E  L  F  F  L  A  L  E  T  *  V  I  Q  C  *  K  L  L  L  S   : A  S  L  L  T  C  P  M  T  K  S  I  E  E  S  C  I  H  P  L  T   : I  F  G  I  L  Q  Q  R  W  E  L  L  F  Y  G  L  L  W  L  K  T  W  Q  K  V  T  V  T  L  E  *  E  S  C  S  I  C  Q  R :   K  R  P  L  N  T  *  E  K  I  C  G  I  L  S  M  A  L  L  F  T  N  S  E  A  L  P  G  L  R  S  Q  V  H  E  K  W  S  M  V  W  C  S  K  L  P  V  K  V  K  K  F  H  K  L  D  C  I  R  C  T  I  T  R  T  N  V  A  E  P  R  K  S  L  G  L  F  K  Y  F  I  F  L  L  *  A  I  L  V  Y  L  M  K  H  M  *  P  L  N  *  G  V  G  D  V  F  V  I  P  E  *  K  L  I  L  S  L  S  S  T  A  Y  *  T  V  F  I  F  C   : A  K  K  K  K  K  K  K  K  K </second_frame>
            <third_frame>   S  F  T  Y  S  W  S  C  S  V  L  H  L  Q  L  N  S  K  F  F  *  F  N  F  Y  S  F  F  F  Y  L  F  V  *  G  A  C  N  V  E  S  G  S  I  C  G  V  D  F  P  P  Y  A  A  V  I  D  G  D  F  S  S  M  Y  R  T  Q  A  R  C  *  Y  S  S  *  S  L  V  Q  *   : G  H  R  I  P  N  D  R  K  R  S  I  G  S  A  R  S  P  P  T  S  C  N  I  I  *  T  A  I  *  P  L  H :   G  V  I  S  V  T  *  E  K  Y  *  G  S  T  R  K  C  C  L  V  S  K  M  E  D  L  K  Q  A  A  *  Q  E  *  D  T  V  L  P   : S  S  N  *  Q  Y  Q  R  F  C  S  H  N  I  H  S  N  S  R  I  G  L  P  K  L  L  W  L  V  *  T  S  T  W  H  V  F  Q  C  Q  R  *  G  R  D  D  V  N  D  L  Q  L  A  F  H  S   : G  R  H  D  C  P  D  R  W  K  S  Y  S  W  P  W  R  S  W  S  S  G  D  R  Y  T  N  W  K  T  *  H  V  C  S  S  C  W  Y  Q  P  T  K   : S  A  P  S  Y  A  *  C  R  D  K  Q  S  E  A  S  R  R  S  S  L :   S  W  T  A  T  T  *  V  G  R  G  R  I  F  V  N  S  *  *  I  C  G  S  C  S  C  S  L  A  K  G  C  C  A   : V  *  G  F  S  S  K  V  G  F  *  D  A  G  S  L  S  E  K  V  L  H  V  Q  *  *  Y  T   : G  N  S  W  C  C  S  C  W  A  I  R  N  C  *  G  T  G  P  A  T  D  *  F  C  Q  P  K  D  S  G  S  W  S  R  K  :  C  G  A  W  C  S  *  D  G  I  T  S  R  F  K  N  G  W  T  I  S  R  S  P  L  F  S  S  G  *  K   : W  S  Y  H  K  G  *  E  R  Y  *  S  S  S  I  T  I  C  *  S  P  S  R  D  *  G  A  R  T  T  G  G  S  R  T  C  *  S   : G  Q  K  G  E  A  S  C  T  S  W  F  V  R  S  W  R  H  I  S  *  G   : G  A  E  G  H  E  R  V  R  F  C  *  T  C  N  F  C  H  V  K  S  Y  K  Q  C :   *  M  L  S  C  *  C  F  Q  A  C  W  R  R  Y  C  F  C  *  W  E  S  L  C  K  C  *  S  R :   E  W  *  D  R  P  C  K  S  S  E  *  H  V  S  L  P  W  :  H  R  A  G  S  S  S  F  W  R  S  K  H  K  *  Y  N  V  R  S  C  C  *  V  :  P  R  F  L  H  V  R  *  R  N  Q  *  R  N  L  V  S  I  H  *  R  :  Y  S  G  Y  Y  S  R  G  G  S  C  C  F  T  G  C  C  G  *  R  P  G  R  R  S  R  *  R  W  S  E  R  V  A  A  Y  V  K   : G  R  D  H  *  T  R  E  R  K  Y  V  V  S  C  L  W  P  S  C  S  R  I  V  K  H  F  L  G  *  D  H  R  S  T  R  S  G  V  W  S  G  A  P  N  C  L  *  R  S  K  S  F  T  N  L  T  V  L  G  V  Q  L  Q  G  Q  M  L  L  N  H  E  R  V  *  G  S  S  N  I  S  F  F  C  C  K  P  F  L  F  I  S  *  S  I  C  N  L  *  I  E  E  *  E  M  Y  L  L  S  L  N  K  S  *  Y  F  L  S  A  A  P  P  I  E  L  Y  S  F  F  V  :  L  K  K  K  K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8214" stop="8456"/>
                    <exon start="9722" stop="9818"/>
                    <exon start="11619" stop="11737"/>
                    <exon start="11836" stop="12003"/>
                    <exon start="13147" stop="13275"/>
                    <exon start="13752" stop="13812"/>
                    <exon start="14530" stop="14633"/>
                    <exon start="14711" stop="14794"/>
                    <exon start="14906" stop="15012"/>
                    <exon start="15135" stop="15228"/>
                    <exon start="15541" stop="15654"/>
                    <exon start="15838" stop="15903"/>
                    <exon start="16600" stop="16672"/>
                    <exon start="16756" stop="16842"/>
                    <exon start="17010" stop="17064"/>
                    <exon start="17140" stop="17211"/>
                    <exon start="17369" stop="17431"/>
                    <exon start="18246" stop="18360"/>
                    <exon start="18480" stop="18548"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1917</number_coding_nucleotides>
                  <number_encoded_amino_acids>639</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSHIHGVVVFFIFNSILSFSDSIFTRFFFIYLYKERAMWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGLLPPRVISFEQQYDRFMESFRSLEKNTEGQPESVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLSIVDEFVEAVHARWPKAVVQFEDFQAKWAFETLDRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLTDFANQKIVVVGAGSAGLGVLKMALQAVSRMAGPSADPHFFLLDKNGLITKDRKDIDPAALPFAKAHHEIEGLGLQEGAGLAEVVKKVKPHVLLGLSGVGGIFHEEVLRAMKESDSVRPAIFAMSNPTNNAECCPVDAFKLAGEDIVFASGSPFANVDLGNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDDEINRGILYPSIDDIRDITAEVGAAVLRAAVAEDLAEGHGDVGVRELQHMSKEETIEHVRENMWYPVYGPLVHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14565" e_stop="14633"/>
            <exon e_start="14708" e_stop="14794"/>
            <exon e_start="14906" e_stop="15012"/>
            <exon e_start="15135" e_stop="15228"/>
            <exon e_start="15541" e_stop="15654"/>
            <exon e_start="15838" e_stop="15903"/>
            <exon e_start="16600" e_stop="16672"/>
            <exon e_start="16756" e_stop="16842"/>
            <exon e_start="17010" e_stop="17064"/>
            <exon e_start="17140" e_stop="17211"/>
            <exon e_start="17369" e_stop="17431"/>
            <exon e_start="18246" e_stop="18360"/>
            <exon e_start="18480" e_stop="18945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.798" e_score="0.957"/>
          <exon-intron don_prob="0.945" acc_prob="0.989" e_score="0.977"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.568" e_score="1.000"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="14565" e_stop="14633" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.798">
            <gDNA_intron_boundary i_start="14634" i_stop="14707" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="14708" e_stop="14794" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14795" i_stop="14905" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="14906" e_stop="15012" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15013" i_stop="15134" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15135" e_stop="15228" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15229" i_stop="15540" i_length="312"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15541" e_stop="15654" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.419" acc_prob="0.940">
            <gDNA_intron_boundary i_start="15655" i_stop="15837" i_length="183"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15838" e_stop="15903" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16600" e_stop="16672" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16756" e_stop="16842" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17010" e_stop="17064" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.910" acc_prob="0.980">
            <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="17140" e_stop="17211" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="17369" e_stop="17431" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="18246" e_stop="18360" e_length="115"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.568">
            <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119"/>
          </intron>
          <exon e_serial="13" e_score="0.897">
            <gDNA_exon_boundary e_start="18480" e_stop="18945" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14565" stop="14633"/>
              <exon start="14708" stop="14794"/>
              <exon start="14906" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14996" stop="15012"/>
              <exon start="15135" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15148" stop="15228"/>
              <exon start="15541" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15563" stop="15654"/>
              <exon start="15838" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16614" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16764" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16798" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18300" stop="18360"/>
              <exon start="18480" stop="18945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATATTTGTCAATAGTTGATGAATTTGTGGAAGCTGTTCATGCTCGTTGGCCAAAGGCTGTTGTGCAG : TAGTTTGAGGATTTTCAAGCAAAGTGGGCTTTTGAGACGCTGGATCGCTATCGGAAAAAGTTTTGCATGTTCAATGATGATATACAG : GGAACAGCTGGTGTTGCTCTTGCTGGGCTATTAGGAACTGTTAGGGCACAGGGCCGGCCACTGACTGATTTTGCCAACCAAAAGATAGTGGTAGTTGGAGCAGGAAG : TGCGGGGCTTGGTGTTCTTAAGATGGCATTACAAGCCGTTTCAAGAATGGCTGGACCATCAGCAGATCCCCACTTTTTTCTTCTGGATAAAAAT : GGTCTTATCACAAAGGATAGGAAAGATATTGATCCAGCAGCATTACCATTTGCTAAAGCCCATCACGAGATTGAGGGGCTAGGACTACAGGAGGGAGCAGGACTTGCTGAAGTG : GTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG : GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG : CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG : GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG : CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG : CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA : TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG : GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTGGCTCGAAGGAAATCGGCACAGAACGGAAAA</gDNA_template>
            <first_frame> E  Y  L  S  I  V  D  E  F  V  E  A  V  H  A  R  W  P  K  A  V  V  Q  :  *  F  E  D  F  Q  A  K  W  A  F  E  T  L  D  R  Y  R  K  K  F  C  M  F  N  D  D  I  Q  :  G  T  A  G  V  A  L  A  G  L  L  G  T  V  R  A  Q  G  R  P  L  T  D  F  A  N  Q  K  I  V  V  V  G  A  G  S :   A  G  L  G  V  L  K  M  A  L  Q  A  V  S  R  M  A  G  P  S  A  D  P  H  F  F  L  L  D  K  N  :  G  L  I  T  K  D  R  K  D  I  D  P  A  A  L  P  F  A  K  A  H  H  E  I  E  G  L  G  L  Q  E  G  A  G  L  A  E  V  :  V  K  K  V  K  P  H  V  L  L  G  L  S  G  V  G  G  I  F  H  E  E  :  V  L  R  A  M  K  E  S  D  S  V  R  P  A  I  F  A  M  S  N  P  T  N  N   : A  E  C  C  P  V  D  A  F  K  L  A  G  E  D  I  V  F  A  S  G  S  P  F  A  N  V  D  L   : G  N  G  K  I  G  H  V  N  Q  A  N  N  M  Y  L  F  P  G :   I  G  L  G  A  L  L  S  G  A  R  N  I  S  D  T  M  L  E  A  A  A  E  C :   L  A  S  Y  M  S  D  D  E  I  N  R  G  I  L  Y  P  S  I  D  D :   I  R  D  I  T  A  E  V  G  A  A  V  L  R  A  A  V  A  E  D  L  A  E  G  H  G  D  V  G  V  R  E  L  Q  H  M  S  K  :  E  E  T  I  E  H  V  R  E  N  M  W  Y  P  V  Y  G  P  L  V  H  E  *  *  S  T  S  W  V  E  I  T  G  P  R  E  V  E  Y  G  L  V  L  Q  I  A  C  K  G  Q  K  V  S  Q  T  *  L  Y  *  V  Y  N  Y  K  D  K  C  C  *  T  T  K  E  S  R  A  L  Q  I  F  H  F  F  V  V  S  H  S  C  L  S  H  E  A  Y  V  T  F  K  L  R  S  R  R  C  I  C  Y  P  *  I  K  A  D  T  F  S  Q  Q  H  R  L  L  N  C  I  H  F  L  W  F  F  L  L  K  M  K  *  H  L  K  Q  F  D  F  G  S  K  E  I  G  T  E  R  K  </first_frame>
            <second_frame>  N  I  C  Q  *  L  M  N  L  W  K  L  F  M  L  V  G  Q  R  L  L  C  S :   S  L  R  I  F  K  Q  S  G  L  L  R  R  W  I  A  I  G  K  S  F  A  C  S  M  M  I  Y  R :   E  Q  L  V  L  L  L  L  G  Y  *  E  L  L  G  H  R  A  G  H  *  L  I  L  P  T  K  R  *  W  *  L  E  Q  E   : V  R  G  L  V  F  L  R  W  H  Y  K  P  F  Q  E  W  L  D  H  Q  Q  I  P  T  F  F  F  W  I  K  M :   V  L  S  Q  R  I  G  K  I  L  I  Q  Q  H  Y  H  L  L  K  P  I  T  R  L  R  G  *  D  Y  R  R  E  Q  D  L  L  K  W :   S  K  R  *  S  L  M  Y  F  L  V  C  Q  E  L  E  A  Y  F  M  R  R :   C  *  G  P  *  K  S  Q  I  L  L  D  L  Q  F  L  P  C  Q  I  L  Q  T  M  :  L  N  A  V  L  L  M  L  S  S  L  L  E  K  I  L  F  L  L  V  G  V  P  L  Q  M  L  I  *  :  G  M  V  R  *  A  M  *  I  K  R  I  T  C  I  S  S  L   : A  *  G  W  E  L  F  F  L  A  L  E  T  *  V  I  Q  C  *  K  L  L  L  S   : A  S  L  L  T  C  P  M  T  K  S  I  E  E  S  C  I  H  P  L  T   : I  F  G  I  L  Q  Q  R  W  E  L  L  F  Y  G  L  L  W  L  K  T  W  Q  K  V  T  V  T  L  E  *  E  S  C  S  I  C  Q  R :   K  R  P  L  N  T  *  E  K  I  C  G  I  L  S  M  A  L  L  F  T  N  S  E  A  L  P  G  L  R  S  Q  V  H  E  K  W  S  M  V  W  C  S  K  L  P  V  K  V  K  K  F  H  K  L  D  C  I  R  C  T  I  T  R  T  N  V  A  E  P  R  K  S  L  G  L  F  K  Y  F  I  F  L  L  *  A  I  L  V  Y  L  M  K  H  M  *  P  L  N  *  G  V  G  D  V  F  V  I  P  E  *  K  L  I  L  S  L  S  S  T  A  Y  *  T  V  F  I  F  C  G  F  F  F  L  K  *  N  S  I  *  N  N  L  I  L  A  R  R  K  S  A  Q  N  G  K </second_frame>
            <third_frame>   I  F  V  N  S  *  *  I  C  G  S  C  S  C  S  L  A  K  G  C  C  A   : V  V  *  G  F  S  S  K  V  G  F  *  D  A  G  S  L  S  E  K  V  L  H  V  Q  *  *  Y  T   : G  N  S  W  C  C  S  C  W  A  I  R  N  C  *  G  T  G  P  A  T  D  *  F  C  Q  P  K  D  S  G  S  W  S  R  K  :  C  G  A  W  C  S  *  D  G  I  T  S  R  F  K  N  G  W  T  I  S  R  S  P  L  F  S  S  G  *  K   : W  S  Y  H  K  G  *  E  R  Y  *  S  S  S  I  T  I  C  *  S  P  S  R  D  *  G  A  R  T  T  G  G  S  R  T  C  *  S   : G  Q  K  G  E  A  S  C  T  S  W  F  V  R  S  W  R  H  I  S  *  G   : G  A  E  G  H  E  R  V  R  F  C  *  T  C  N  F  C  H  V  K  S  Y  K  Q  C :   *  M  L  S  C  *  C  F  Q  A  C  W  R  R  Y  C  F  C  *  W  E  S  L  C  K  C  *  S  R :   E  W  *  D  R  P  C  K  S  S  E  *  H  V  S  L  P  W  :  H  R  A  G  S  S  S  F  W  R  S  K  H  K  *  Y  N  V  R  S  C  C  *  V  :  P  R  F  L  H  V  R  *  R  N  Q  *  R  N  L  V  S  I  H  *  R  :  Y  S  G  Y  Y  S  R  G  G  S  C  C  F  T  G  C  C  G  *  R  P  G  R  R  S  R  *  R  W  S  E  R  V  A  A  Y  V  K   : G  R  D  H  *  T  R  E  R  K  Y  V  V  S  C  L  W  P  S  C  S  R  I  V  K  H  F  L  G  *  D  H  R  S  T  R  S  G  V  W  S  G  A  P  N  C  L  *  R  S  K  S  F  T  N  L  T  V  L  G  V  Q  L  Q  G  Q  M  L  L  N  H  E  R  V  *  G  S  S  N  I  S  F  F  C  C  K  P  F  L  F  I  S  *  S  I  C  N  L  *  I  E  E  *  E  M  Y  L  L  S  L  N  K  S  *  Y  F  L  S  A  A  P  P  I  E  L  Y  S  F  F  V  V  F  S  S  *  N  E  I  A  F  E  T  I  *  F  W  L  E  G  N  R  H  R  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14711" stop="14794"/>
                    <exon start="14906" stop="15012"/>
                    <exon start="15135" stop="15228"/>
                    <exon start="15541" stop="15654"/>
                    <exon start="15838" stop="15903"/>
                    <exon start="16600" stop="16672"/>
                    <exon start="16756" stop="16842"/>
                    <exon start="17010" stop="17064"/>
                    <exon start="17140" stop="17211"/>
                    <exon start="17369" stop="17431"/>
                    <exon start="18246" stop="18360"/>
                    <exon start="18480" stop="18548"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEDFQAKWAFETLDRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLTDFANQKIVVVGAGSAGLGVLKMALQAVSRMAGPSADPHFFLLDKNGLITKDRKDIDPAALPFAKAHHEIEGLGLQEGAGLAEVVKKVKPHVLLGLSGVGGIFHEEVLRAMKESDSVRPAIFAMSNPTNNAECCPVDAFKLAGEDIVFASGSPFANVDLGNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDDEINRGILYPSIDDIRDITAEVGAAVLRAAVAEDLAEGHGDVGVRELQHMSKEETIEHVRENMWYPVYGPLVHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15834" e_stop="15903"/>
            <exon e_start="16600" e_stop="16672"/>
            <exon e_start="16756" e_stop="16842"/>
            <exon e_start="17010" e_stop="17064"/>
            <exon e_start="17140" e_stop="17211"/>
            <exon e_start="17369" e_stop="17431"/>
            <exon e_start="18246" e_stop="18360"/>
            <exon e_start="18480" e_stop="18945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="0.986"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.568" e_score="1.000"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15834" e_stop="15903" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15904" i_stop="16599" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="16600" e_stop="16672" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16673" i_stop="16755" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16756" e_stop="16842" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16843" i_stop="17009" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17010" e_stop="17064" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.910" acc_prob="0.980">
            <gDNA_intron_boundary i_start="17065" i_stop="17139" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17140" e_stop="17211" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17212" i_stop="17368" i_length="157"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17369" e_stop="17431" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17432" i_stop="18245" i_length="814"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18246" e_stop="18360" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.568">
            <gDNA_intron_boundary i_start="18361" i_stop="18479" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="0.897">
            <gDNA_exon_boundary e_start="18480" e_stop="18945" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15834" stop="15903"/>
              <exon start="16600" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16614" stop="16672"/>
              <exon start="16756" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16764" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16798" stop="16842"/>
              <exon start="17010" stop="17064"/>
              <exon start="17140" stop="17211"/>
              <exon start="17369" stop="17431"/>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18246" stop="18360"/>
              <exon start="18480" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18300" stop="18360"/>
              <exon start="18480" stop="18945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGGTCAAAAAGGTGAAGCCTCATGTACTTCTTGGTTTGTCAGGAGTTGGAGGCATATTTCATGAGGAG : GTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAAACAATG : CTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCAAATGTTGATCTAG : GGAATGGTAAGATAGGCCATGTAAATCAAGCGAATAACATGTATCTCTTCCCTGG : CATAGGGCTGGGAGCTCTTCTTTCTGGCGCTCGAAACATAAGTGATACAATGTTAGAAGCTGCTGCTGAGTG : CCTCGCTTCTTACATGTCCGATGACGAAATCAATAGAGGAATCTTGTATCCATCCATTGACGA : TATTCGGGATATTACAGCAGAGGTGGGAGCTGCTGTTTTACGGGCTGCTGTGGCTGAAGACCTGGCAGAAGGTCACGGTGACGTTGGAGTGAGAGAGTTGCAGCATATGTCAAAG : GAAGAGACCATTGAACACGTGAGAGAAAATATGTGGTATCCTGTCTATGGCCCTCTTGTTCACGAATAGTGAAGCACTTCCTGGGTTGAGATCACAGGTCCACGAGAAGTGGAGTATGGTCTGGTGCTCCAAATTGCCTGTAAAGGTCAAAAAGTTTCACAAACTTGACTGTATTAGGTGTACAATTACAAGGACAAATGTTGCTGAACCACGAAAGAGTCTAGGGCTCTTCAAATATTTCATTTTTTTGTTGTAAGCCATTCTTGTTTATCTCATGAAGCATATGTAACCTTTAAATTGAGGAGTAGGAGATGTATTTGTTATCCCTGAATAAAAGCTGATACTTTCTCTCAGCAGCACCGCCTATTGAACTGTATTCATTTTTTGTGGTTTTTTCTTCTTAAAATGAAATAGCATTTGAAACAATTTGATTTTGGCTCGAAGGAAATCGGCACAGAACGGAAAA</gDNA_template>
            <first_frame> S  G  Q  K  G  E  A  S  C  T  S  W  F  V  R  S  W  R  H  I  S  *  G   : G  A  E  G  H  E  R  V  R  F  C  *  T  C  N  F  C  H  V  K  S  Y  K  Q  C :   *  M  L  S  C  *  C  F  Q  A  C  W  R  R  Y  C  F  C  *  W  E  S  L  C  K  C  *  S  R :   E  W  *  D  R  P  C  K  S  S  E  *  H  V  S  L  P  W  :  H  R  A  G  S  S  S  F  W  R  S  K  H  K  *  Y  N  V  R  S  C  C  *  V  :  P  R  F  L  H  V  R  *  R  N  Q  *  R  N  L  V  S  I  H  *  R  :  Y  S  G  Y  Y  S  R  G  G  S  C  C  F  T  G  C  C  G  *  R  P  G  R  R  S  R  *  R  W  S  E  R  V  A  A  Y  V  K   : G  R  D  H  *  T  R  E  R  K  Y  V  V  S  C  L  W  P  S  C  S  R  I  V  K  H  F  L  G  *  D  H  R  S  T  R  S  G  V  W  S  G  A  P  N  C  L  *  R  S  K  S  F  T  N  L  T  V  L  G  V  Q  L  Q  G  Q  M  L  L  N  H  E  R  V  *  G  S  S  N  I  S  F  F  C  C  K  P  F  L  F  I  S  *  S  I  C  N  L  *  I  E  E  *  E  M  Y  L  L  S  L  N  K  S  *  Y  F  L  S  A  A  P  P  I  E  L  Y  S  F  F  V  V  F  S  S  *  N  E  I  A  F  E  T  I  *  F  W  L  E  G  N  R  H  R  T  E   </first_frame>
            <second_frame>  Q  V  K  K  V  K  P  H  V  L  L  G  L  S  G  V  G  G  I  F  H  E  E  :  V  L  R  A  M  K  E  S  D  S  V  R  P  A  I  F  A  M  S  N  P  T  N  N   : A  E  C  C  P  V  D  A  F  K  L  A  G  E  D  I  V  F  A  S  G  S  P  F  A  N  V  D  L   : G  N  G  K  I  G  H  V  N  Q  A  N  N  M  Y  L  F  P  G :   I  G  L  G  A  L  L  S  G  A  R  N  I  S  D  T  M  L  E  A  A  A  E  C :   L  A  S  Y  M  S  D  D  E  I  N  R  G  I  L  Y  P  S  I  D  D :   I  R  D  I  T  A  E  V  G  A  A  V  L  R  A  A  V  A  E  D  L  A  E  G  H  G  D  V  G  V  R  E  L  Q  H  M  S  K  :  E  E  T  I  E  H  V  R  E  N  M  W  Y  P  V  Y  G  P  L  V  H  E  *  *  S  T  S  W  V  E  I  T  G  P  R  E  V  E  Y  G  L  V  L  Q  I  A  C  K  G  Q  K  V  S  Q  T  *  L  Y  *  V  Y  N  Y  K  D  K  C  C  *  T  T  K  E  S  R  A  L  Q  I  F  H  F  F  V  V  S  H  S  C  L  S  H  E  A  Y  V  T  F  K  L  R  S  R  R  C  I  C  Y  P  *  I  K  A  D  T  F  S  Q  Q  H  R  L  L  N  C  I  H  F  L  W  F  F  L  L  K  M  K  *  H  L  K  Q  F  D  F  G  S  K  E  I  G  T  E  R  K  </second_frame>
            <third_frame>   R  S  K  R  *  S  L  M  Y  F  L  V  C  Q  E  L  E  A  Y  F  M  R  R :   C  *  G  P  *  K  S  Q  I  L  L  D  L  Q  F  L  P  C  Q  I  L  Q  T  M  :  L  N  A  V  L  L  M  L  S  S  L  L  E  K  I  L  F  L  L  V  G  V  P  L  Q  M  L  I  *  :  G  M  V  R  *  A  M  *  I  K  R  I  T  C  I  S  S  L   : A  *  G  W  E  L  F  F  L  A  L  E  T  *  V  I  Q  C  *  K  L  L  L  S   : A  S  L  L  T  C  P  M  T  K  S  I  E  E  S  C  I  H  P  L  T   : I  F  G  I  L  Q  Q  R  W  E  L  L  F  Y  G  L  L  W  L  K  T  W  Q  K  V  T  V  T  L  E  *  E  S  C  S  I  C  Q  R :   K  R  P  L  N  T  *  E  K  I  C  G  I  L  S  M  A  L  L  F  T  N  S  E  A  L  P  G  L  R  S  Q  V  H  E  K  W  S  M  V  W  C  S  K  L  P  V  K  V  K  K  F  H  K  L  D  C  I  R  C  T  I  T  R  T  N  V  A  E  P  R  K  S  L  G  L  F  K  Y  F  I  F  L  L  *  A  I  L  V  Y  L  M  K  H  M  *  P  L  N  *  G  V  G  D  V  F  V  I  P  E  *  K  L  I  L  S  L  S  S  T  A  Y  *  T  V  F  I  F  C  G  F  F  F  L  K  *  N  S  I  *  N  N  L  I  L  A  R  R  K  S  A  Q  N  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15835" stop="15903"/>
                    <exon start="16600" stop="16672"/>
                    <exon start="16756" stop="16842"/>
                    <exon start="17010" stop="17064"/>
                    <exon start="17140" stop="17211"/>
                    <exon start="17369" stop="17431"/>
                    <exon start="18246" stop="18360"/>
                    <exon start="18480" stop="18548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVKKVKPHVLLGLSGVGGIFHEEVLRAMKESDSVRPAIFAMSNPTNNAECCPVDAFKLAGEDIVFASGSPFANVDLGNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDDEINRGILYPSIDDIRDITAEVGAAVLRAAVAEDLAEGHGDVGVRELQHMSKEETIEHVRENMWYPVYGPLVHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="19750" e_stop="19909"/>
            <exon e_start="20587" e_stop="20646"/>
            <exon e_start="20902" e_stop="21078"/>
            <exon e_start="21158" e_stop="21417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19750" e_stop="19909" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19910" i_stop="20586" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20587" e_stop="20646" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20647" i_stop="20901" i_length="255"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20902" e_stop="21078" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21079" i_stop="21157" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="21417" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19750" stop="19909"/>
              <exon start="20587" stop="20646"/>
              <exon start="20902" stop="21078"/>
              <exon start="21158" stop="21417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGCAAGAGATGAGAAAAAAGGGAATGAAGCTGTTATTAATATGGATGAACACTCTAATTATAATATCATTTTTCATCAACTTGATGTGACTAACATTTCTAGTATTGTAACACTCAGAGATTTCATCAAGAATAGATTTGGCAAACTTGATATCTTG : GTGAATAATGCGGCAATTCTTGGAGTGCTTTTAGATAAAGATTTCATTATAAACCCACAA : CAAAATTTATTCATTGAGAAGATGAAAGTAGCAACTCAAACTATTGATATAGGTGAAGAATGCATAAAAACAAATTACTATGGTGCAAAATGGATGATACAAGAATTATTACCTCTACTTCAATTATCCGATTCGCCACGTATTGTCAATGTCTCCTCCTCTACTGGAAAGCTCCAA : CATGTACGCAATGAATGGGCTATAGGAGTCTTGAATGATTGTGACAATCTAACAGAAGACAAAGTGGATGAGGTTTTGAATGTTTTTCTCAAAGATTTCAAAGAGGATTTGTTAGAAAGCAAAAATTGGCCTCTAATAGTATCTGCTTATACACTATCAAAAGCAGCATTAAATGGTTACACAAGAATATTGGCTAAGAAATATCCAAATTTTCTCATAAATTGTGTTTGTCCAGGTTATGTAAAAACTGATTTATGTTA</gDNA_template>
            <first_frame> N  S  K  R  *  E  K  R  E  *  S  C  Y  *  Y  G  *  T  L  *  L  *  Y  H  F  S  S  T  *  C  D  *  H  F  *  Y  C  N  T  Q  R  F  H  Q  E  *  I  W  Q  T  *  Y  L   : G  E  *  C  G  N  S  W  S  A  F  R  *  R  F  H  Y  K  P  T   : T  K  F  I  H  *  E  D  E  S  S  N  S  N  Y  *  Y  R  *  R  M  H  K  N  K  L  L  W  C  K  M  D  D  T  R  I  I  T  S  T  S  I  I  R  F  A  T  Y  C  Q  C  L  L  L  Y  W  K  A  P   : T  C  T  Q  *  M  G  Y  R  S  L  E  *  L  *  Q  S  N  R  R  Q  S  G  *  G  F  E  C  F  S  Q  R  F  Q  R  G  F  V  R  K  Q  K  L  A  S  N  S  I  C  L  Y  T  I  K  S  S  I  K  W  L  H  K  N  I  G  *  E  I  S  K  F  S  H  K  L  C  L  S  R  L  C  K  N  *  F  M  L </first_frame>
            <second_frame>  T  A  R  D  E  K  K  G  N  E  A  V  I  N  M  D  E  H  S  N  Y  N  I  I  F  H  Q  L  D  V  T  N  I  S  S  I  V  T  L  R  D  F  I  K  N  R  F  G  K  L  D  I  L  :  V  N  N  A  A  I  L  G  V  L  L  D  K  D  F  I  I  N  P  Q  :  Q  N  L  F  I  E  K  M  K  V  A  T  Q  T  I  D  I  G  E  E  C  I  K  T  N  Y  Y  G  A  K  W  M  I  Q  E  L  L  P  L  L  Q  L  S  D  S  P  R  I  V  N  V  S  S  S  T  G  K  L  Q  :  H  V  R  N  E  W  A  I  G  V  L  N  D  C  D  N  L  T  E  D  K  V  D  E  V  L  N  V  F  L  K  D  F  K  E  D  L  L  E  S  K  N  W  P  L  I  V  S  A  Y  T  L  S  K  A  A  L  N  G  Y  T  R  I  L  A  K  K  Y  P  N  F  L  I  N  C  V  C  P  G  Y  V  K  T  D  L  C   </second_frame>
            <third_frame>   Q  Q  E  M  R  K  K  G  M  K  L  L  L  I  W  M  N  T  L  I  I  I  S  F  F  I  N  L  M  *  L  T  F  L  V  L  *  H  S  E  I  S  S  R  I  D  L  A  N  L  I  S  W :   *  I  M  R  Q  F  L  E  C  F  *  I  K  I  S  L  *  T  H  N :   K  I  Y  S  L  R  R  *  K  *  Q  L  K  L  L  I  *  V  K  N  A  *  K  Q  I  T  M  V  Q  N  G  *  Y  K  N  Y  Y  L  Y  F  N  Y  P  I  R  H  V  L  S  M  S  P  P  L  L  E  S  S  N :   M  Y  A  M  N  G  L  *  E  S  *  M  I  V  T  I  *  Q  K  T  K  W  M  R  F  *  M  F  F  S  K  I  S  K  R  I  C  *  K  A  K  I  G  L  *  *  Y  L  L  I  H  Y  Q  K  Q  H  *  M  V  T  Q  E  Y  W  L  R  N  I  Q  I  F  S  *  I  V  F  V  Q  V  M  *  K  L  I  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19751" stop="19909"/>
                    <exon start="20587" stop="20646"/>
                    <exon start="20902" stop="21078"/>
                    <exon start="21158" stop="21415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TARDEKKGNEAVINMDEHSNYNIIFHQLDVTNISSIVTLRDFIKNRFGKLDILVNNAAILGVLLDKDFIINPQQNLFIEKMKVATQTIDIGEECIKTNYYGAKWMIQELLPLLQLSDSPRIVNVSSSTGKLQHVRNEWAIGVLNDCDNLTEDKVDEVLNVFLKDFKEDLLESKNWPLIVSAYTLSKAALNGYTRILAKKYPNFLINCVCPGYVKTDLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="8154" e_stop="8206"/>
            <exon e_start="8319" e_stop="8456"/>
            <exon e_start="9722" e_stop="9818"/>
            <exon e_start="11619" e_stop="11737"/>
            <exon e_start="11836" e_stop="12003"/>
            <exon e_start="13147" e_stop="13275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.825" acc_prob="0.999" e_score="0.868"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.747" acc_prob="0.788" e_score="0.979"/>
          <exon-intron don_prob="0.733" acc_prob="0.941" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.868">
            <gDNA_exon_boundary e_start="8154" e_stop="8206" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.825" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8207" i_stop="8318" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8319" e_stop="8456" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8457" i_stop="9721" i_length="1265"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="9722" e_stop="9818" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.747" acc_prob="0.788">
            <gDNA_intron_boundary i_start="9819" i_stop="11618" i_length="1800"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="11619" e_stop="11737" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.733" acc_prob="0.941">
            <gDNA_intron_boundary i_start="11738" i_stop="11835" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="11836" e_stop="12003" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12004" i_stop="13146" i_length="1143"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="13147" e_stop="13275" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8154" stop="8206"/>
              <exon start="8319" stop="8456"/>
              <exon start="9722" stop="9818"/>
              <exon start="11619" stop="11737"/>
              <exon start="11836" stop="12003"/>
              <exon start="13147" stop="13275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGTAGAAGGAATATAAGCAGCAGCATTGAAGGAGAGTATAAATATCTGG : GAGCGTGCAATGTGGAGAGTGGCTCGATCTGCGGCGTCGACTTTCCGCCGTACGCGGCGGTTATCGACGGCGATTTCAGCTCCATGTATCGTACACAAGCGCGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAG : GACACAGGATTCCCAATGACAGAAAGAGATCGATTGGGTCTGCGCGGTCTCCTCCCACCTCGTGTAATATCATTTGAACAGCAATATGACCGCTTCA : TGGAGTCATTTCGGTCACTTGAGAAAAATACTGAGGGTCAACCAGAAAGTGTTGTCTCGTTAGCAAAATGGAGGATCTTAAACAGGCTGCATGACAGGAATGAGACACTGTACTACCGA : GTTCTAATTGACAATATCAAAGATTTTGCTCCCATAATATACACTCCAACAGTAGGATTGGTTTGCCAAAACTACTCTGGCTTGTTTAGACGTCCACGTGGCATGTATTTCAGTGCCAAAGATAAGGGAGAGATGATGTCAATGATCTTCAACTGGCCTTCCACTCAG : GTAGACATGATTGTCCTGACAGATGGAAGTCGTATTCTTGGCCTTGGCGATCTTGGAGTTCAGGGGATAGGTATACCAATTGGAAAACTTGACATGTATGTAGCAGCTGCTGGTATCAACCCACAAAGA</gDNA_template>
            <first_frame> K  K  *  K  E  Y  K  Q  Q  H  *  R  R  V  *  I  S  G :   S  V  Q  C  G  E  W  L  D  L  R  R  R  L  S  A  V  R  G  G  Y  R  R  R  F  Q  L  H  V  S  Y  T  S  A  V  L  I  F  F  M  I  L  G  S  I  R :   T  Q  D  S  Q  *  Q  K  E  I  D  W  V  C  A  V  S  S  H  L  V  *  Y  H  L  N  S  N  M  T  A  S  :  W  S  H  F  G  H  L  R  K  I  L  R  V  N  Q  K  V  L  S  R  *  Q  N  G  G  S  *  T  G  C  M  T  G  M  R  H  C  T  T  E :   F  *  L  T  I  S  K  I  L  L  P  *  Y  T  L  Q  Q  *  D  W  F  A  K  T  T  L  A  C  L  D  V  H  V  A  C  I  S  V  P  K  I  R  E  R  *  C  Q  *  S  S  T  G  L  P  L  R :   *  T  *  L  S  *  Q  M  E  V  V  F  L  A  L  A  I  L  E  F  R  G  *  V  Y  Q  L  E  N  L  T  C  M  *  Q  L  L  V  S  T  H  K   </first_frame>
            <second_frame>  K  S  R  R  N  I  S  S  S  I  E  G  E  Y  K  Y  L   : G  A  C  N  V  E  S  G  S  I  C  G  V  D  F  P  P  Y  A  A  V  I  D  G  D  F  S  S  M  Y  R  T  Q  A  R  C  *  Y  S  S  *  S  L  V  Q  *   : G  H  R  I  P  N  D  R  K  R  S  I  G  S  A  R  S  P  P  T  S  C  N  I  I  *  T  A  I  *  P  L  H :   G  V  I  S  V  T  *  E  K  Y  *  G  S  T  R  K  C  C  L  V  S  K  M  E  D  L  K  Q  A  A  *  Q  E  *  D  T  V  L  P   : S  S  N  *  Q  Y  Q  R  F  C  S  H  N  I  H  S  N  S  R  I  G  L  P  K  L  L  W  L  V  *  T  S  T  W  H  V  F  Q  C  Q  R  *  G  R  D  D  V  N  D  L  Q  L  A  F  H  S   : G  R  H  D  C  P  D  R  W  K  S  Y  S  W  P  W  R  S  W  S  S  G  D  R  Y  T  N  W  K  T  *  H  V  C  S  S  C  W  Y  Q  P  T  K  </second_frame>
            <third_frame>   K  V  E  G  I  *  A  A  A  L  K  E  S  I  N  I  W  :  E  R  A  M  W  R  V  A  R  S  A  A  S  T  F  R  R  T  R  R  L  S  T  A  I  S  A  P  C  I  V  H  K  R  G  A  D  I  L  H  D  P  W  F  N  K  :  D  T  G  F  P  M  T  E  R  D  R  L  G  L  R  G  L  L  P  P  R  V  I  S  F  E  Q  Q  Y  D  R  F   : M  E  S  F  R  S  L  E  K  N  T  E  G  Q  P  E  S  V  V  S  L  A  K  W  R  I  L  N  R  L  H  D  R  N  E  T  L  Y  Y  R  :  V  L  I  D  N  I  K  D  F  A  P  I  I  Y  T  P  T  V  G  L  V  C  Q  N  Y  S  G  L  F  R  R  P  R  G  M  Y  F  S  A  K  D  K  G  E  M  M  S  M  I  F  N  W  P  S  T  Q  :  V  D  M  I  V  L  T  D  G  S  R  I  L  G  L  G  D  L  G  V  Q  G  I  G  I  P  I  G  K  L  D  M  Y  V  A  A  A  G  I  N  P  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8174" stop="8206"/>
                    <exon start="8319" stop="8456"/>
                    <exon start="9722" stop="9818"/>
                    <exon start="11619" stop="11737"/>
                    <exon start="11836" stop="12003"/>
                    <exon start="13147" stop="13275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAALKESINIWERAMWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGLLPPRVISFEQQYDRFMESFRSLEKNTEGQPESVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27144" PGL_stop="29676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27144" e_stop="27185"/>
            <exon e_start="27406" e_stop="27652"/>
            <exon e_start="27745" e_stop="27816"/>
            <exon e_start="28724" e_stop="28903"/>
            <exon e_start="29348" e_stop="29676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.621" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27144" e_stop="27185" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27186" i_stop="27405" i_length="220"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27406" e_stop="27652" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.875" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27653" i_stop="27744" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27745" e_stop="27816" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.621">
            <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28724" e_stop="28903" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29348" e_stop="29676" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27144" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27144" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27147" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27149" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27149" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27149" stop="27185"/>
              <exon start="27406" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27424" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27424" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27462" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27534" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27534" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27534" stop="27652"/>
              <exon start="27745" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27782" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAACCAAAATTATTATCGATGGCAGAAGGCAGAGCAACAAA : GTATGCAGTAGTTACAGGGGCAAATAAAGGGATTGGATTTGAAATATGTAGACAGCTAGCTTCTAATGGAGTGTTGGTAATTTTGGGTGCTAGAAATGAGAAGAGAGGGATTGAAGCTTTGGAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTG : GTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG : ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG : AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTTCAATAGTGGGATATTGTCTATTGAAGAAGGCGCGGAGAGTCCTGTAAGGCTTGCTCTACAGCCTGATGA</gDNA_template>
            <first_frame> I  T  K  I  I  I  D  G  R  R  Q  S  N  K  :  V  C  S  S  Y  R  G  K  *  R  D  W  I  *  N  M  *  T  A  S  F  *  W  S  V  G  N  F  G  C  *  K  *  E  E  R  D  *  S  F  G  E  T  *  R  L  W  F  G  *  K  C  G  V  S  S  A  *  C  C  G  *  F  *  Y  *  F  F  G  *  I  Y  *  D  K  I  W  Q  A  *  Y  L   : G  E  Q  C  R  N  S  W  S  Q  C  *  C  *  C  L  K  S  *  T  R  V  Q  W   : D  R  R  I  S  S  Q  L  E  *  N  I  E  S  V  I  *  V  G  K  G  V  S  *  D  K  L  L  W  C  E  E  N  D  *  S  M  Y  S  T  P  P  I  I  *  V  A  E  D  C  E  C  I  I  L  Y  G  K  A  K   : E  L  E  T  *  M  G  Y  W  S  I  K  *  Q  R  K  P  D  R  R  E  N  R  R  G  D  K  S  I  S  E  G  F  Q  R  R  F  T  S  S  Q  R  L  A  F  F  N  V  S  L  H  S  L  *  S  S  N  E  R  L  L  E  G  H  G  K  E  A  S  V  Y  T  D  Q  L  C  L  S  W  F  C  E  N  R  Y  Q  F  Q  *  W  D  I  V  Y  *  R  R  R  G  E  S  C  K  A  C  S  T  A  *  * </first_frame>
            <second_frame>  *  P  K  L  L  S  M  A  E  G  R  A  T  K :   Y  A  V  V  T  G  A  N  K  G  I  G  F  E  I  C  R  Q  L  A  S  N  G  V  L  V  I  L  G  A  R  N  E  K  R  G  I  E  A  L  E  K  L  K  G  F  G  L  A  E  N  V  V  F  H  Q  L  D  V  V  D  N  S  S  I  D  S  L  A  E  F  I  K  T  K  F  G  R  L  D  I  L  :  V  N  N  A  G  I  A  G  V  S  A  D  A  D  A  L  R  A  K  R  E  S  S  G  :  T  G  G  S  Q  V  N  W  N  E  I  L  S  Q  S  F  E  L  A  K  E  C  L  E  T  N  Y  Y  G  A  K  K  M  T  E  A  C  I  P  L  L  Q  L  S  K  S  P  R  I  V  N  V  S  S  S  M  G  K  L  K  :  N  L  K  H  E  W  A  T  G  V  L  N  D  S  E  N  L  T  E  E  K  I  E  E  V  I  N  Q  Y  L  K  D  F  K  E  D  S  L  Q  A  K  G  W  P  S  L  M  S  A  Y  I  V  S  K  A  A  M  N  A  Y  S  R  V  M  A  K  K  H  P  S  I  Q  I  N  C  V  C  P  G  F  V  K  T  D  I  N  F  N  S  G  I  L  S  I  E  E  G  A  E  S  P  V  R  L  A  L  Q  P  D   </second_frame>
            <third_frame>   N  Q  N  Y  Y  R  W  Q  K  A  E  Q  Q   : S  M  Q  *  L  Q  G  Q  I  K  G  L  D  L  K  Y  V  D  S  *  L  L  M  E  C  W  *  F  W  V  L  E  M  R  R  E  G  L  K  L  W  R  N  L  K  A  L  V  W  L  K  M  W  C  F  I  S  L  M  L  W  I  I  L  V  L  I  L  W  L  N  L  L  R  Q  N  L  A  G  L  I  S  W :   *  T  M  Q  E  *  L  E  S  V  L  M  L  M  P  *  E  L  N  E  S  P  V  G :   Q  E  D  L  K  S  I  G  M  K  Y  *  V  S  H  L  S  W  Q  R  S  V  L  R  Q  T  I  M  V  R  R  K  *  L  K  H  V  F  H  S  S  N  Y  L  S  R  R  G  L  *  M  Y  H  P  L  W  E  S  *  R :   T  *  N  M  N  G  L  L  E  Y  *  M  T  A  K  T  *  Q  K  R  K  *  K  R  *  *  I  N  I  *  R  I  S  K  K  I  H  F  K  P  K  A  G  L  L  *  C  Q  L  T  *  S  L  K  Q  Q  *  T  L  T  R  G  S  W  Q  R  S  I  R  L  Y  R  S  I  V  S  V  L  V  L  *  K  Q  I  S  I  S  I  V  G  Y  C  L  L  K  K  A  R  R  V  L  *  G  L  L  Y  S  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27148" stop="27185"/>
                    <exon start="27406" stop="27652"/>
                    <exon start="27745" stop="27816"/>
                    <exon start="28724" stop="28903"/>
                    <exon start="29348" stop="29674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLLSMAEGRATKYAVVTGANKGIGFEICRQLASNGVLVILGARNEKRGIEALEKLKGFGLAENVVFHQLDVVDNSSIDSLAEFIKTKFGRLDILVNNAGIAGVSADADALRAKRESSGTGGSQVNWNEILSQSFELAKECLETNYYGAKKMTEACIPLLQLSKSPRIVNVSSSMGKLKNLKHEWATGVLNDSENLTEEKIEEVINQYLKDFKEDSLQAKGWPSLMSAYIVSKAAMNAYSRVMAKKHPSIQINCVCPGFVKTDINFNSGILSIEEGAESPVRLALQPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27527" e_stop="27816"/>
            <exon e_start="28724" e_stop="28903"/>
            <exon e_start="29348" e_stop="29676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.621" e_score="0.914"/>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="27527" e_stop="27816" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.621">
            <gDNA_intron_boundary i_start="27817" i_stop="28723" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28724" e_stop="28903" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28904" i_stop="29347" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29348" e_stop="29676" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27527" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27782" stop="27816"/>
              <exon start="28724" stop="28903"/>
              <exon start="29348" stop="29676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAACTTAAAGGCTTTGGTTTGGCTGAAAATGTGGTGTTTCATCAGCTTGATGTTGTGGATAATTCTAGTATTGATTCTTTGGCTGAATTTATTAAGACAAAATTTGGCAGGCTTGATATCTTGGTATAATGTTCTTGATTTTAAGTTTCTTGTTTTATGACCTAAACAATATTTGGTAAAATAAGCTGTTGATGTTTGTGGTGTTTTTTTATTAGGTGAACAATGCAGGAATAGCTGGAGTCAGTGCTGATGCTGATGCCTTAAGAGCTAAACGAGAGTCCAGTGGG : ACAGGAGGATCTCAAGTCAATTGGAATGAAATATTGAGTCAGTCATTTGAGTTGGCAAAGGAGTGTCTTGAGACAAACTATTATGGTGCGAAGAAAATGACTGAAGCATGTATTCCACTCCTCCAATTATCTAAGTCGCCGAGGATTGTGAATGTATCATCCTCTATGGGAAAGCTAAAG : AACTTGAAACATGAATGGGCTACTGGAGTATTAAATGACAGCGAAAACCTGACAGAAGAGAAAATAGAAGAGGTGATAAATCAATATCTGAAGGATTTCAAAGAAGATTCACTTCAAGCCAAAGGCTGGCCTTCTTTAATGTCAGCTTACATAGTCTCTAAAGCAGCAATGAACGCTTACTCGAGGGTCATGGCAAAGAAGCATCCGTCTATACAGATCAATTGTGTCTGTCCTGGTTTTGTGAAAACAGATATCAATTTCAATAGTGGGATATTGTCTATTGAAGAAGGCGCGGAGAGTCCTGTAAGGCTTGCTCTACAGCCTGATGA</gDNA_template>
            <first_frame> E  K  L  K  G  F  G  L  A  E  N  V  V  F  H  Q  L  D  V  V  D  N  S  S  I  D  S  L  A  E  F  I  K  T  K  F  G  R  L  D  I  L  V  *  C  S  *  F  *  V  S  C  F  M  T  *  T  I  F  G  K  I  S  C  *  C  L  W  C  F  F  I  R  *  T  M  Q  E  *  L  E  S  V  L  M  L  M  P  *  E  L  N  E  S  P  V  G :   Q  E  D  L  K  S  I  G  M  K  Y  *  V  S  H  L  S  W  Q  R  S  V  L  R  Q  T  I  M  V  R  R  K  *  L  K  H  V  F  H  S  S  N  Y  L  S  R  R  G  L  *  M  Y  H  P  L  W  E  S  *  R :   T  *  N  M  N  G  L  L  E  Y  *  M  T  A  K  T  *  Q  K  R  K  *  K  R  *  *  I  N  I  *  R  I  S  K  K  I  H  F  K  P  K  A  G  L  L  *  C  Q  L  T  *  S  L  K  Q  Q  *  T  L  T  R  G  S  W  Q  R  S  I  R  L  Y  R  S  I  V  S  V  L  V  L  *  K  Q  I  S  I  S  I  V  G  Y  C  L  L  K  K  A  R  R  V  L  *  G  L  L  Y  S  L  M  </first_frame>
            <second_frame>  R  N  L  K  A  L  V  W  L  K  M  W  C  F  I  S  L  M  L  W  I  I  L  V  L  I  L  W  L  N  L  L  R  Q  N  L  A  G  L  I  S  W  Y  N  V  L  D  F  K  F  L  V  L  *  P  K  Q  Y  L  V  K  *  A  V  D  V  C  G  V  F  L  L  G  E  Q  C  R  N  S  W  S  Q  C  *  C  *  C  L  K  S  *  T  R  V  Q  W   : D  R  R  I  S  S  Q  L  E  *  N  I  E  S  V  I  *  V  G  K  G  V  S  *  D  K  L  L  W  C  E  E  N  D  *  S  M  Y  S  T  P  P  I  I  *  V  A  E  D  C  E  C  I  I  L  Y  G  K  A  K   : E  L  E  T  *  M  G  Y  W  S  I  K  *  Q  R  K  P  D  R  R  E  N  R  R  G  D  K  S  I  S  E  G  F  Q  R  R  F  T  S  S  Q  R  L  A  F  F  N  V  S  L  H  S  L  *  S  S  N  E  R  L  L  E  G  H  G  K  E  A  S  V  Y  T  D  Q  L  C  L  S  W  F  C  E  N  R  Y  Q  F  Q  *  W  D  I  V  Y  *  R  R  R  G  E  S  C  K  A  C  S  T  A  *  * </second_frame>
            <third_frame>   E  T  *  R  L  W  F  G  *  K  C  G  V  S  S  A  *  C  C  G  *  F  *  Y  *  F  F  G  *  I  Y  *  D  K  I  W  Q  A  *  Y  L  G  I  M  F  L  I  L  S  F  L  F  Y  D  L  N  N  I  W  *  N  K  L  L  M  F  V  V  F  F  Y  *  V  N  N  A  G  I  A  G  V  S  A  D  A  D  A  L  R  A  K  R  E  S  S  G  :  T  G  G  S  Q  V  N  W  N  E  I  L  S  Q  S  F  E  L  A  K  E  C  L  E  T  N  Y  Y  G  A  K  K  M  T  E  A  C  I  P  L  L  Q  L  S  K  S  P  R  I  V  N  V  S  S  S  M  G  K  L  K  :  N  L  K  H  E  W  A  T  G  V  L  N  D  S  E  N  L  T  E  E  K  I  E  E  V  I  N  Q  Y  L  K  D  F  K  E  D  S  L  Q  A  K  G  W  P  S  L  M  S  A  Y  I  V  S  K  A  A  M  N  A  Y  S  R  V  M  A  K  K  H  P  S  I  Q  I  N  C  V  C  P  G  F  V  K  T  D  I  N  F  N  S  G  I  L  S  I  E  E  G  A  E  S  P  V  R  L  A  L  Q  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27745" stop="27816"/>
                    <exon start="28724" stop="28903"/>
                    <exon start="29348" stop="29674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNNAGIAGVSADADALRAKRESSGTGGSQVNWNEILSQSFELAKECLETNYYGAKKMTEACIPLLQLSKSPRIVNVSSSMGKLKNLKHEWATGVLNDSENLTEEKIEEVINQYLKDFKEDSLQAKGWPSLMSAYIVSKAAMNAYSRVMAKKHPSIQINCVCPGFVKTDINFNSGILSIEEGAESPVRLALQPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38360" PGL_stop="40182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38360" e_stop="38430"/>
            <exon e_start="38516" e_stop="38765"/>
            <exon e_start="39494" e_stop="39601"/>
            <exon e_start="39717" e_stop="39902"/>
            <exon e_start="40004" e_stop="40182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38360" e_stop="38430" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38431" i_stop="38515" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38516" e_stop="38765" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38766" i_stop="39493" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39494" e_stop="39601" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.802" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39602" i_stop="39716" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39717" e_stop="39902" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="39903" i_stop="40003" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40004" e_stop="40182" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38360" stop="38430"/>
              <exon start="38516" stop="38765"/>
              <exon start="39494" stop="39601"/>
              <exon start="39717" stop="39902"/>
              <exon start="40004" stop="40182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38367" stop="38430"/>
              <exon start="38516" stop="38765"/>
              <exon start="39494" stop="39601"/>
              <exon start="39717" stop="39902"/>
              <exon start="40004" stop="40094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38367" stop="38430"/>
              <exon start="38516" stop="38765"/>
              <exon start="39494" stop="39601"/>
              <exon start="39717" stop="39902"/>
              <exon start="40004" stop="40016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATACACTGTTGGACAAAAAATATCCTTTCAATAATGGCAGAGAAAATCACCAGCCTCCAGAGCACAAG : GTATGCAGTAGTGACTGGAGGGAACAAGGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAACGGAGTAGTGGTAGTGTTGACATCAAGAGATGAAAAAAGAGGGATTGAAGCTATGGAAAGGCTTAAAAAGGAGTTAGACATTACTGATCAGATCTTGTTTCATCAACTTGATGTTATGGATACACTTAGTATTTCTTCACTTGTGAACTTCATCAACACAAAATTTGGAAGGCTTGATATTCTG : GTTAATAACGCTGGGGTTGGTGGATCAATGATGGAAGAAAATTGTAATATTCTTACAATAAAAGATTTAATAGAAGGAGATTTCGTAACCATTTCTACTAAAAATGAA : GTTGTGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGCTACAAATTATGAGTTGACAAAGCAATGTGTAGAGACAAACTACTATGGTGCAAAAAGAATGATTGAAGCATTTGCTCCTCTCCTTCAACTCTCTAATTCACCAAGGATCGTTAATGTTGCTTCTTCCTTAGGAAAATTGAAG : TTATTGTGTAACGAATGGGCTAAAAATGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTAGAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTA</gDNA_template>
            <first_frame> P  I  H  C  W  T  K  N  I  L  S  I  M  A  E  K  I  T  S  L  Q  S  T  R :   Y  A  V  V  T  G  G  N  K  G  I  G  Y  E  T  C  K  Q  L  A  S  N  G  V  V  V  V  L  T  S  R  D  E  K  R  G  I  E  A  M  E  R  L  K  K  E  L  D  I  T  D  Q  I  L  F  H  Q  L  D  V  M  D  T  L  S  I  S  S  L  V  N  F  I  N  T  K  F  G  R  L  D  I  L  :  V  N  N  A  G  V  G  G  S  M  M  E  E  N  C  N  I  L  T  I  K  D  L  I  E  G  D  F  V  T  I  S  T  K  N  E  :  V  V  D  E  S  V  V  E  K  S  I  E  G  I  A  T  N  Y  E  L  T  K  Q  C  V  E  T  N  Y  Y  G  A  K  R  M  I  E  A  F  A  P  L  L  Q  L  S  N  S  P  R  I  V  N  V  A  S  S  L  G  K  L  K  :  L  L  C  N  E  W  A  K  N  V  L  S  D  A  K  S  L  T  E  E  R  I  E  Q  V  L  N  E  F  L  K  D  F  R  E  N  S  V  E  S  K  G  W  P  T  Y  F  A  A  Y  K  V  S  K  A  S  L  I  A   </first_frame>
            <second_frame>  Q  Y  T  V  G  Q  K  I  S  F  Q  *  W  Q  R  K  S  P  A  S  R  A  Q   : G  M  Q  *  *  L  E  G  T  R  E  *  D  M  K  H  A  S  N  *  Q  A  T  E  *  W  *  C  *  H  Q  E  M  K  K  E  G  L  K  L  W  K  G  L  K  R  S  *  T  L  L  I  R  S  C  F  I  N  L  M  L  W  I  H  L  V  F  L  H  L  *  T  S  S  T  Q  N  L  E  G  L  I  F  W :   L  I  T  L  G  L  V  D  Q  *  W  K  K  I  V  I  F  L  Q  *  K  I  *  *  K  E  I  S  *  P  F  L  L  K  M  K :   L  W  T  K  V  L  W  R  N  Q  L  K  V  S  L  Q  I  M  S  *  Q  S  N  V  *  R  Q  T  T  M  V  Q  K  E  *  L  K  H  L  L  L  S  F  N  S  L  I  H  Q  G  S  L  M  L  L  L  P  *  E  N  *  S :   Y  C  V  T  N  G  L  K  M  C  *  V  M  Q  K  A  *  Q  K  K  G  *  S  K  C  *  M  N  F  S  K  I  L  E  K  I  Q  L  N  P  K  D  G  Q  L  T  L  Q  L  T  K  C  Q  K  H  R  *  L  P  </second_frame>
            <third_frame>   N  T  L  L  D  K  K  Y  P  F  N  N  G  R  E  N  H  Q  P  P  E  H  K  :  V  C  S  S  D  W  R  E  Q  G  N  R  I  *  N  M  Q  A  I  S  K  Q  R  S  S  G  S  V  D  I  K  R  *  K  K  R  D  *  S  Y  G  K  A  *  K  G  V  R  H  Y  *  S  D  L  V  S  S  T  *  C  Y  G  Y  T  *  Y  F  F  T  C  E  L  H  Q  H  K  I  W  K  A  *  Y  S   : G  *  *  R  W  G  W  W  I  N  D  G  R  K  L  *  Y  S  Y  N  K  R  F  N  R  R  R  F  R  N  H  F  Y  *  K  *   : S  C  G  R  K  C  C  G  E  I  N  *  R  Y  R  Y  K  L  *  V  D  K  A  M  C  R  D  K  L  L  W  C  K  K  N  D  *  S  I  C  S  S  P  S  T  L  *  F  T  K  D  R  *  C  C  F  F  L  R  K  I  E   : V  I  V  *  R  M  G  *  K  C  A  K  *  C  K  K  P  N  R  R  K  D  R  A  S  V  K  *  I  S  Q  R  F  *  R  K  F  S  *  I  Q  R  M  A  N  L  L  C  S  L  Q  S  V  K  S  I  V  D  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38360" stop="38430"/>
                    <exon start="38516" stop="38765"/>
                    <exon start="39494" stop="39601"/>
                    <exon start="39717" stop="39902"/>
                    <exon start="40004" stop="40180"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIHCWTKNILSIMAEKITSLQSTRYAVVTGGNKGIGYETCKQLASNGVVVVLTSRDEKRGIEAMERLKKELDITDQILFHQLDVMDTLSISSLVNFINTKFGRLDILVNNAGVGGSMMEENCNILTIKDLIEGDFVTISTKNEVVDESVVEKSIEGIATNYELTKQCVETNYYGAKRMIEAFAPLLQLSNSPRIVNVASSLGKLKLLCNEWAKNVLSDAKSLTEERIEQVLNEFLKDFRENSVESKGWPTYFAAYKVSKASLIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43275" PGL_stop="44875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43275" e_stop="43363"/>
            <exon e_start="43469" e_stop="43727"/>
            <exon e_start="43804" e_stop="43905"/>
            <exon e_start="43995" e_stop="44180"/>
            <exon e_start="44286" e_stop="44875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.973"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43275" e_stop="43363" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43364" i_stop="43468" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43469" e_stop="43727" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43728" i_stop="43803" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43804" e_stop="43905" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43906" i_stop="43994" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="43995" e_stop="44180" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44181" i_stop="44285" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="44286" e_stop="44875" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43275" stop="43363"/>
              <exon start="43469" stop="43727"/>
              <exon start="43804" stop="43905"/>
              <exon start="43995" stop="44180"/>
              <exon start="44286" stop="44335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44069" stop="44180"/>
              <exon start="44286" stop="44875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44075" stop="44180"/>
              <exon start="44286" stop="44718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACCAAAAGGGTAAATATCAAGAATTTAGAACTAACAATTATCCTTTAAAAAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAG : GTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAACACAAATTTTGGAAGGCTCGATATTCTG : GTTAACAACGCAGGGGTTAGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATCAA : GTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAG : TTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGCAGCTTACAAAGTGTCAAAAGCATCGTTGATTGCCTACACAAGAGTTTTAGGTTCAAAATATCCGAATTTTCGCGTTAATTCGGTGTGCCCTGGCTATTGTGGTACAGACATGACTGCATATACTGGAAGTTTAACTGCTGAAGAAGGTGCTGAAAGCTTGGTGAAACTTGCTTTGTTGCCAAATGATGGACCTTCTGGCCTCTTCTTTTACAGAAAGGATGTCACCTCGTTTTGAACATTTGGCTAATTCAACTTTTAAGTAATAACTTATTATCAATCAACTGCTCCATAAGAAATAAGTCGGGTTGGTTGTATGAATTATTTGTCTATTCAGCTAGATTATGTTTTATTCTTACTTGTACTACTTTCATTGCAAACAACAGGCCTACTATAAGTGTCATGTTGCTCAGACACTTCTAAAGAAAAGTTGAACTTGAGTCTGAATCC</gDNA_template>
            <first_frame> *  T  K  R  V  N  I  K  N  L  E  L  T  I  I  L  *  K  M  A  E  E  I  S  T  L  Q  S  K  R :   Y  A  V  V  T  G  G  N  K  G  I  G  Y  E  T  C  K  Q  L  A  S  K  G  L  V  V  V  L  T  S  R  D  E  K  R  G  I  E  A  I  E  R  L  K  K  E  L  N  I  T  N  N  N  D  H  I  L  F  H  Q  L  D  V  M  D  P  A  S  I  S  S  L  V  D  F  I  N  T  N  F  G  R  L  D  I  L  :  V  N  N  A  G  V  S  G  L  M  V  E  G  N  L  V  I  L  K  N  L  I  E  G  D  F  E  T  I  S  T  E  N  Q  :  V  E  D  E  S  V  V  E  K  S  I  E  G  I  V  T  N  Y  E  L  T  K  Q  C  I  E  T  N  F  Y  G  A  K  R  M  S  E  A  F  I  P  L  L  Q  L  S  N  S  P  T  I  V  N  V  A  S  F  L  G  K  L  K  :  L  L  C  N  E  W  A  K  K  V  L  S  D  A  K  S  L  T  E  E  R  I  E  Q  V  L  N  E  F  L  K  D  F  I  E  N  S  V  E  S  K  G  W  P  T  Y  F  A  A  Y  K  V  S  K  A  S  L  I  A  Y  T  R  V  L  G  S  K  Y  P  N  F  R  V  N  S  V  C  P  G  Y  C  G  T  D  M  T  A  Y  T  G  S  L  T  A  E  E  G  A  E  S  L  V  K  L  A  L  L  P  N  D  G  P  S  G  L  F  F  Y  R  K  D  V  T  S  F  *  T  F  G  *  F  N  F  *  V  I  T  Y  Y  Q  S  T  A  P  *  E  I  S  R  V  G  C  M  N  Y  L  S  I  Q  L  D  Y  V  L  F  L  L  V  L  L  S  L  Q  T  T  G  L  L  *  V  S  C  C  S  D  T  S  K  E  K  L  N  L  S  L  N   </first_frame>
            <second_frame>  R  P  K  G  *  I  S  R  I  *  N  *  Q  L  S  F  K  K  W  Q  R  K  S  A  P  S  K  A  K   : G  M  Q  *  *  L  V  E  T  K  E  *  D  M  K  H  A  S  N  *  Q  A  K  D  *  W  *  C  *  H  Q  E  M  K  R  E  G  L  K  L  L  K  G  L  K  R  S  *  T  L  L  I  I  M  I  T  F  C  F  I  N  L  M  L  W  I  Q  L  V  F  L  L  L  W  T  L  S  T  Q  I  L  E  G  S  I  F  W :   L  T  T  Q  G  L  V  D  *  W  W  K  E  I  L  L  Y  *  K  I  *  L  K  E  I  S  R  P  F  L  L  K  I  K :   L  R  T  K  V  L  W  R  N  Q  L  K  V  S  L  Q  I  M  S  *  Q  N  N  A  *  R  Q  T  F  M  V  Q  K  G  *  V  K  H  L  S  L  S  F  N  S  L  I  H  Q  R  L  L  M  L  L  L  S  *  E  N  *  S :   Y  C  V  T  N  G  L  K  K  C  *  V  M  Q  K  A  *  Q  K  K  G  *  S  K  C  *  M  N  F  S  K  I  L  *  K  I  Q  L  N  P  K  D  G  Q  L  T  L  Q  L  T  K  C  Q  K  H  R  *  L  P  T  Q  E  F  *  V  Q  N  I  R  I  F  A  L  I  R  C  A  L  A  I  V  V  Q  T  *  L  H  I  L  E  V  *  L  L  K  K  V  L  K  A  W  *  N  L  L  C  C  Q  M  M  D  L  L  A  S  S  F  T  E  R  M  S  P  R  F  E  H  L  A  N  S  T  F  K  *  *  L  I  I  N  Q  L  L  H  K  K  *  V  G  L  V  V  *  I  I  C  L  F  S  *  I  M  F  Y  S  Y  L  Y  Y  F  H  C  K  Q  Q  A  Y  Y  K  C  H  V  A  Q  T  L  L  K  K  S  *  T  *  V  *  I  </second_frame>
            <third_frame>   D  Q  K  G  K  Y  Q  E  F  R  T  N  N  Y  P  L  K  N  G  R  G  N  Q  H  P  P  K  Q  K  :  V  C  S  S  D  W  W  K  Q  R  N  R  I  *  N  M  Q  A  I  S  K  Q  R  I  S  G  S  V  D  I  K  R  *  K  E  R  D  *  S  Y  *  K  A  *  K  G  V  K  H  Y  *  *  *  *  S  H  F  V  S  S  T  *  C  Y  G  S  S  *  Y  F  F  S  C  G  L  Y  Q  H  K  F  W  K  A  R  Y  S   : G  *  Q  R  R  G  *  W  I  N  G  G  R  K  S  C  Y  T  K  K  F  N  *  R  R  F  R  D  H  F  Y  *  K  S   : S  *  G  R  K  C  C  G  E  I  N  *  R  Y  R  Y  K  L  *  V  D  K  T  M  H  R  D  K  L  L  W  C  K  K  D  E  *  S  I  Y  P  S  P  S  T  L  *  F  T  N  D  C  *  C  C  F  F  L  R  K  I  E   : V  I  V  *  R  M  G  *  K  S  A  K  *  C  K  K  P  N  R  R  K  D  R  A  S  V  K  *  I  S  Q  R  F  Y  R  K  F  S  *  I  Q  R  M  A  N  L  L  C  S  L  Q  S  V  K  S  I  V  D  C  L  H  K  S  F  R  F  K  I  S  E  F  S  R  *  F  G  V  P  W  L  L  W  Y  R  H  D  C  I  Y  W  K  F  N  C  *  R  R  C  *  K  L  G  E  T  C  F  V  A  K  *  W  T  F  W  P  L  L  L  Q  K  G  C  H  L  V  L  N  I  W  L  I  Q  L  L  S  N  N  L  L  S  I  N  C  S  I  R  N  K  S  G  W  L  Y  E  L  F  V  Y  S  A  R  L  C  F  I  L  T  C  T  T  F  I  A  N  N  R  P  T  I  S  V  M  L  L  R  H  F  *  R  K  V  E  L  E  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43326" stop="43363"/>
                    <exon start="43469" stop="43727"/>
                    <exon start="43804" stop="43905"/>
                    <exon start="43995" stop="44180"/>
                    <exon start="44286" stop="44663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAEEISTLQSKRYAVVTGGNKGIGYETCKQLASKGLVVVLTSRDEKRGIEAIERLKKELNITNNNDHILFHQLDVMDPASISSLVDFINTNFGRLDILVNNAGVSGLMVEGNLVILKNLIEGDFETISTENQVEDESVVEKSIEGIVTNYELTKQCIETNFYGAKRMSEAFIPLLQLSNSPTIVNVASFLGKLKLLCNEWAKKVLSDAKSLTEERIEQVLNEFLKDFIENSVESKGWPTYFAAYKVSKASLIAYTRVLGSKYPNFRVNSVCPGYCGTDMTAYTGSLTAEEGAESLVKLALLPNDGPSGLFFYRKDVTSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48841" PGL_stop="48624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48841" e_stop="48624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="48841" e_stop="48624" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48841" stop="48624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCGCTATGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTAAAGCCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATTTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</gDNA_template>
            <first_frame> S  S  R  Y  A  S  C  P  I  P  Q  D  N  L  P  A  I  S  S  L  S  Q  L  Q  L  L  P  H  T  Q  L  Q  *  M  K  E  K  H  T  S  K  A  W  T  S  N  S  L  L  F  H  L  W  C  K  C  T  R  I  Y  S  C  S  S  Q  H  P  H  Q  D  Q  H   </first_frame>
            <second_frame>  L  L  A  M  L  L  A  Q  F  L  K  I  I  C  Q  P  Y  H  L  F  P  S  F  S  Y  C  H  I  L  S  F  S  R  *  K  R  N  T  L  L  K  P  G  H  P  T  H  C  C  S  T  Y  G  V  N  V  P  G  F  T  L  A  R  V  N  I  P  T  K  I  S  I  </second_frame>
            <third_frame>   F  S  L  C  F  L  P  N  S  S  R  *  S  A  S  H  I  I  S  F  P  A  S  A  I  A  T  Y  S  A  S  V  D  E  R  E  T  H  F  *  S  L  D  I  Q  L  T  V  V  P  P  M  V  *  M  Y  P  D  L  L  L  L  E  S  T  S  P  P  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0182E16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52543" PGL_stop="56001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52543" e_stop="52611"/>
            <exon e_start="52717" e_stop="52975"/>
            <exon e_start="55353" e_stop="55454"/>
            <exon e_start="55568" e_stop="55753"/>
            <exon e_start="55859" e_stop="56001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.942"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.978"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="52543" e_stop="52611" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52612" i_stop="52716" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="52717" e_stop="52975" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52976" i_stop="55352" i_length="2377"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55353" e_stop="55454" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55455" i_stop="55567" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="55568" e_stop="55753" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="55754" i_stop="55858" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.888">
            <gDNA_exon_boundary e_start="55859" e_stop="56001" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52543" stop="52611"/>
              <exon start="52717" stop="52975"/>
              <exon start="55353" stop="55454"/>
              <exon start="55568" stop="55753"/>
              <exon start="55859" stop="56001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52543" stop="52611"/>
              <exon start="52717" stop="52975"/>
              <exon start="55353" stop="55454"/>
              <exon start="55568" stop="55753"/>
              <exon start="55859" stop="55911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52576" stop="52611"/>
              <exon start="52717" stop="52975"/>
              <exon start="55353" stop="55454"/>
              <exon start="55568" stop="55753"/>
              <exon start="55859" stop="55885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAATCTAGATCTAACAATTATCCTTTCAACAATGGCAGAGGAAATCAGCACCCTCCAAAGCAAAAG : GTATGCAGTAGTGACTGGTGGAAACAAAGGAATAGGATATGAAACATGCAAGCAATTAGCAAGCAAAGGATTAGTGGTAGTGTTGACATCAAGAGATGAAAAGAGAGGGATTGAAGCTATTGAAAGGCTTAAAAAGGAGTTAAACATTACTAATAATAATGATCACATTTTGTTTCATCAACTTGATGTTATGGATCCAGCTAGTATTTCTTCTCTTGTGGACTTTATCAAAACAAAATTTGGAAGGCTCGATATTTTG : GTTAACAACGCAGGGGTTGGTGGATTAATGGTGGAAGGAAATCTTGTTATACTAAAAAATTTAATTGAAGGAGATTTCGAGACCATTTCTACTGAAAATGAA : GTTGAGGACGAAAGTGTTGTGGAGAAATCAATTGAAGGTATCGTTACAAATTATGAGTTGACAAAACAATGCATAGAGACAAACTTTTATGGTGCAAAAAGGATGAGTGAAGCATTTATCCCTCTCCTTCAACTCTCTAATTCACCAACGATTGTTAATGTTGCTTCTTTCTTAGGAAAATTGAAG : TTATTGTGTAACGAATGGGCTAAAAAAGTGCTAAGTGATGCAAAAAGCCTAACAGAAGAAAGGATAGAGCAAGTGTTAAATGAATTTCTCAAAGATTTTATAGAAAATTCAGTTGAATCCAAAGGATGGCCAACTTACTTTGC</gDNA_template>
            <first_frame> Q  E  S  R  S  N  N  Y  P  F  N  N  G  R  G  N  Q  H  P  P  K  Q  K  :  V  C  S  S  D  W  W  K  Q  R  N  R  I  *  N  M  Q  A  I  S  K  Q  R  I  S  G  S  V  D  I  K  R  *  K  E  R  D  *  S  Y  *  K  A  *  K  G  V  K  H  Y  *  *  *  *  S  H  F  V  S  S  T  *  C  Y  G  S  S  *  Y  F  F  S  C  G  L  Y  Q  N  K  I  W  K  A  R  Y  F   : G  *  Q  R  R  G  W  W  I  N  G  G  R  K  S  C  Y  T  K  K  F  N  *  R  R  F  R  D  H  F  Y  *  K  *   : S  *  G  R  K  C  C  G  E  I  N  *  R  Y  R  Y  K  L  *  V  D  K  T  M  H  R  D  K  L  L  W  C  K  K  D  E  *  S  I  Y  P  S  P  S  T  L  *  F  T  N  D  C  *  C  C  F  F  L  R  K  I  E   : V  I  V  *  R  M  G  *  K  S  A  K  *  C  K  K  P  N  R  R  K  D  R  A  S  V  K  *  I  S  Q  R  F  Y  R  K  F  S  *  I  Q  R  M  A  N  L  L  C </first_frame>
            <second_frame>  K  N  L  D  L  T  I  I  L  S  T  M  A  E  E  I  S  T  L  Q  S  K  R :   Y  A  V  V  T  G  G  N  K  G  I  G  Y  E  T  C  K  Q  L  A  S  K  G  L  V  V  V  L  T  S  R  D  E  K  R  G  I  E  A  I  E  R  L  K  K  E  L  N  I  T  N  N  N  D  H  I  L  F  H  Q  L  D  V  M  D  P  A  S  I  S  S  L  V  D  F  I  K  T  K  F  G  R  L  D  I  L  :  V  N  N  A  G  V  G  G  L  M  V  E  G  N  L  V  I  L  K  N  L  I  E  G  D  F  E  T  I  S  T  E  N  E  :  V  E  D  E  S  V  V  E  K  S  I  E  G  I  V  T  N  Y  E  L  T  K  Q  C  I  E  T  N  F  Y  G  A  K  R  M  S  E  A  F  I  P  L  L  Q  L  S  N  S  P  T  I  V  N  V  A  S  F  L  G  K  L  K  :  L  L  C  N  E  W  A  K  K  V  L  S  D  A  K  S  L  T  E  E  R  I  E  Q  V  L  N  E  F  L  K  D  F  I  E  N  S  V  E  S  K  G  W  P  T  Y  F   </second_frame>
            <third_frame>   R  I  *  I  *  Q  L  S  F  Q  Q  W  Q  R  K  S  A  P  S  K  A  K   : G  M  Q  *  *  L  V  E  T  K  E  *  D  M  K  H  A  S  N  *  Q  A  K  D  *  W  *  C  *  H  Q  E  M  K  R  E  G  L  K  L  L  K  G  L  K  R  S  *  T  L  L  I  I  M  I  T  F  C  F  I  N  L  M  L  W  I  Q  L  V  F  L  L  L  W  T  L  S  K  Q  N  L  E  G  S  I  F  W :   L  T  T  Q  G  L  V  D  *  W  W  K  E  I  L  L  Y  *  K  I  *  L  K  E  I  S  R  P  F  L  L  K  M  K :   L  R  T  K  V  L  W  R  N  Q  L  K  V  S  L  Q  I  M  S  *  Q  N  N  A  *  R  Q  T  F  M  V  Q  K  G  *  V  K  H  L  S  L  S  F  N  S  L  I  H  Q  R  L  L  M  L  L  L  S  *  E  N  *  S :   Y  C  V  T  N  G  L  K  K  C  *  V  M  Q  K  A  *  Q  K  K  G  *  S  K  C  *  M  N  F  S  K  I  L  *  K  I  Q  L  N  P  K  D  G  Q  L  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52544" stop="52611"/>
                    <exon start="52717" stop="52975"/>
                    <exon start="55353" stop="55454"/>
                    <exon start="55568" stop="55753"/>
                    <exon start="55859" stop="55999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLDLTIILSTMAEEISTLQSKRYAVVTGGNKGIGYETCKQLASKGLVVVLTSRDEKRGIEAIERLKKELNITNNNDHILFHQLDVMDPASISSLVDFIKTKFGRLDILVNNAGVGGLMVEGNLVILKNLIEGDFETISTENEVEDESVVEKSIEGIVTNYELTKQCIETNFYGAKRMSEAFIPLLQLSNSPTIVNVASFLGKLKLLCNEWAKKVLSDAKSLTEERIEQVLNEFLKDFIENSVESKGWPTYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67053" PGL_stop="63659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67053" e_stop="66759"/>
            <exon e_start="66192" e_stop="65867"/>
            <exon e_start="65111" e_stop="64875"/>
            <exon e_start="64731" e_stop="64564"/>
            <exon e_start="64275" e_stop="63659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="67053" e_stop="66759" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="66758" i_stop="66193" i_length="566"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66192" e_stop="65867" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="65866" i_stop="65112" i_length="755"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65111" e_stop="64875" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64874" i_stop="64732" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64731" e_stop="64564" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64563" i_stop="64276" i_length="288"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64275" e_stop="63659" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67053" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64875"/>
              <exon start="64731" stop="64564"/>
              <exon start="64275" stop="63669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67045" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67039" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67036" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67036" stop="66759"/>
              <exon start="66192" stop="65910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67030" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64875"/>
              <exon start="64731" stop="64690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67030" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67030" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67021" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67020" stop="66759"/>
              <exon start="66192" stop="65993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67015" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67013" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67010" stop="66759"/>
              <exon start="66192" stop="66006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66988" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66982" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66910" stop="66759"/>
              <exon start="66192" stop="65998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66884" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="64875"/>
              <exon start="64731" stop="64694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66864" stop="66759"/>
              <exon start="66192" stop="65867"/>
              <exon start="65111" stop="65036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66132" stop="65867"/>
              <exon start="65111" stop="64875"/>
              <exon start="64731" stop="64703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66131" stop="65867"/>
              <exon start="65111" stop="64877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65910" stop="65867"/>
              <exon start="65111" stop="64875"/>
              <exon start="64731" stop="64564"/>
              <exon start="64275" stop="64265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64916" stop="64875"/>
              <exon start="64731" stop="64564"/>
              <exon start="64275" stop="63707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64672" stop="64564"/>
              <exon start="64275" stop="63898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64267" stop="63659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGGCAAAAAATCTTAAACCCCAAACACAAAAAACGGTGCAAGCATAGGGCTGAGACTTAGAGCTCAACTTCATCTTCTTTGTCAGAAAATGGCGTCATCTCCGATAACAATGATGAAGATGAAGTTAAACAACTGCTCACCGCCGTCAACCGCCGCAGCCGCAGCTCGGTTTTTACCACTTCTTGGGCCCCACCAAATTCGCTTCCGTTCCTCTGTGGCTCCCCTTTACAACCCATCTTTCCCCAGAACCATCATCACTCGTCCAACGTTTTCCTCCTCCTCCATCATCACCG : CTGCGATGGCTAATGAGGCATTGGTAAAAGTGATTGATGGGAAAAAAGTTGCAAAAGATGTTAGAGATGAAATAAATGCTGAAATAACTAGGATGAAAGATTCGATTGGTGTTGTTCCTGGCCTTGCAGTTATACTTGTTGGGGATAGGAAGGATTCTGCAACTTATGTTCGCAACAAGAAAAAAGCTTGTGAAACTGCTGGGATCAAATCCTATGAAGTGTGTTTGCCTGAGAACTCAACAGAGGAAGAAGTTCTCAAGTATATTTCAGACTTCAATGATGATCCTATGGTTCATGGAATTCTTGTTCAGCTACCATTGCCTTCG : CATATGGATGAGGAGAAAATCCTACATGCTGTTTGCATTGAGAAGGATGTGGATGGATTCCACCCACTAAATATTGGCCAGCTTGCGATGCGAGGTAGAGAGCCCTTATTTATCCCCTGTACACCAAAAGGATGCATTGAGCTTCTTCATCGGTACAATGTGGAAATTAAGGGGAAAAAAGCGGTTGTCATTGGCAGGAGCAATATAGTTGGAATGCCTGCTGCCCTGCTGCTGCAG : AGGGAAGATGCCACCGTCAGCATAGTTCATTCCAGAACCACTAACCCAGAGGAGATCACAAGAGAAGCAGATATCATAATCGCTGCTGTAGGGAAACCAAATATGGTTAGAGGTAGCTGGATCAAGCCTGGGGCAGTAATTATTGATGTCGGGATTAATCCTGTGGAG : GATGCTACAAATCCTCGAGGCTATCGACTAGTTGGAGATGTTTGTTATGAGGAGGCCATCAAGGTTGCTTCAGCTATTACTCCTGTTCCTGGAGGAGTTGGGCCCATGACTATAGCAATGCTTCTCTCCAATACTTTGTTATCAGCAAAACGAATTAATAACTTCAAGTGAGATTTGAAGTTCAGTAGTCTAACCAGGTGGGCCATATTGTTGAGCTTCTCAGCTGTCTTTCCTGTCCCTTAGTCAGCATGTATCTGCTGTTATGAACTTGTAGCGTGAAAAACTAACTTTAGGGAACAAAGCATCTAAACAATCTTCAACTCGAGGGACAATGATAAGCTACCTAAGAGGTGCAGTCAAAGCTGGATGCCATGACATTCTTTATAGAGTTTGGTAGGGAATAAGGTCTGATGGCGGAAATCAAGTCTGAGGTGAAACAAGCTCGCCCACCATGGTTTGATTGCACATTTTAAACCCTTTTTCCTTTTGGAATGTTGTCTTCAGTTGTTGAGTGGTCTGTCTGAAGCTCTTGTACTCGGAACAATTGTATATGTGCTATTAGCTGTAAGGTTTGTTCAACATATATGCAGATTCATATCAGTTGAGTATAACATGAT</gDNA_template>
            <first_frame> Y  G  K  K  S  *  T  P  N  T  K  N  G  A  S  I  G  L  R  L  R  A  Q  L  H  L  L  C  Q  K  M  A  S  S  P  I  T  M  M  K  M  K  L  N  N  C  S  P  P  S  T  A  A  A  A  A  R  F  L  P  L  L  G  P  H  Q  I  R  F  R  S  S  V  A  P  L  Y  N  P  S  F  P  R  T  I  I  T  R  P  T  F  S  S  S  S  I  I  T   : A  A  M  A  N  E  A  L  V  K  V  I  D  G  K  K  V  A  K  D  V  R  D  E  I  N  A  E  I  T  R  M  K  D  S  I  G  V  V  P  G  L  A  V  I  L  V  G  D  R  K  D  S  A  T  Y  V  R  N  K  K  K  A  C  E  T  A  G  I  K  S  Y  E  V  C  L  P  E  N  S  T  E  E  E  V  L  K  Y  I  S  D  F  N  D  D  P  M  V  H  G  I  L  V  Q  L  P  L  P  S  :  H  M  D  E  E  K  I  L  H  A  V  C  I  E  K  D  V  D  G  F  H  P  L  N  I  G  Q  L  A  M  R  G  R  E  P  L  F  I  P  C  T  P  K  G  C  I  E  L  L  H  R  Y  N  V  E  I  K  G  K  K  A  V  V  I  G  R  S  N  I  V  G  M  P  A  A  L  L  L  Q  :  R  E  D  A  T  V  S  I  V  H  S  R  T  T  N  P  E  E  I  T  R  E  A  D  I  I  I  A  A  V  G  K  P  N  M  V  R  G  S  W  I  K  P  G  A  V  I  I  D  V  G  I  N  P  V  E  :  D  A  T  N  P  R  G  Y  R  L  V  G  D  V  C  Y  E  E  A  I  K  V  A  S  A  I  T  P  V  P  G  G  V  G  P  M  T  I  A  M  L  L  S  N  T  L  L  S  A  K  R  I  N  N  F  K  *  D  L  K  F  S  S  L  T  R  W  A  I  L  L  S  F  S  A  V  F  P  V  P  *  S  A  C  I  C  C  Y  E  L  V  A  *  K  T  N  F  R  E  Q  S  I  *  T  I  F  N  S  R  D  N  D  K  L  P  K  R  C  S  Q  S  W  M  P  *  H  S  L  *  S  L  V  G  N  K  V  *  W  R  K  S  S  L  R  *  N  K  L  A  H  H  G  L  I  A  H  F  K  P  F  F  L  L  E  C  C  L  Q  L  L  S  G  L  S  E  A  L  V  L  G  T  I  V  Y  V  L  L  A  V  R  F  V  Q  H  I  C  R  F  I  S  V  E  Y  N  M   </first_frame>
            <second_frame>  T  A  K  N  L  K  P  Q  T  Q  K  T  V  Q  A  *  G  *  D  L  E  L  N  F  I  F  F  V  R  K  W  R  H  L  R  *  Q  *  *  R  *  S  *  T  T  A  H  R  R  Q  P  P  Q  P  Q  L  G  F  Y  H  F  L  G  P  T  K  F  A  S  V  P  L  W  L  P  F  T  T  H  L  S  P  E  P  S  S  L  V  Q  R  F  P  P  P  P  S  S  P  :  L  R  W  L  M  R  H  W  *  K  *  L  M  G  K  K  L  Q  K  M  L  E  M  K  *  M  L  K  *  L  G  *  K  I  R  L  V  L  F  L  A  L  Q  L  Y  L  L  G  I  G  R  I  L  Q  L  M  F  A  T  R  K  K  L  V  K  L  L  G  S  N  P  M  K  C  V  C  L  R  T  Q  Q  R  K  K  F  S  S  I  F  Q  T  S  M  M  I  L  W  F  M  E  F  L  F  S  Y  H  C  L  R :   I  W  M  R  R  K  S  Y  M  L  F  A  L  R  R  M  W  M  D  S  T  H  *  I  L  A  S  L  R  C  E  V  E  S  P  Y  L  S  P  V  H  Q  K  D  A  L  S  F  F  I  G  T  M  W  K  L  R  G  K  K  R  L  S  L  A  G  A  I  *  L  E  C  L  L  P  C  C  C  R :   G  K  M  P  P  S  A  *  F  I  P  E  P  L  T  Q  R  R  S  Q  E  K  Q  I  S  *  S  L  L  *  G  N  Q  I  W  L  E  V  A  G  S  S  L  G  Q  *  L  L  M  S  G  L  I  L  W  R :   M  L  Q  I  L  E  A  I  D  *  L  E  M  F  V  M  R  R  P  S  R  L  L  Q  L  L  L  L  F  L  E  E  L  G  P  *  L  *  Q  C  F  S  P  I  L  C  Y  Q  Q  N  E  L  I  T  S  S  E  I  *  S  S  V  V  *  P  G  G  P  Y  C  *  A  S  Q  L  S  F  L  S  L  S  Q  H  V  S  A  V  M  N  L  *  R  E  K  L  T  L  G  N  K  A  S  K  Q  S  S  T  R  G  T  M  I  S  Y  L  R  G  A  V  K  A  G  C  H  D  I  L  Y  R  V  W  *  G  I  R  S  D  G  G  N  Q  V  *  G  E  T  S  S  P  T  M  V  *  L  H  I  L  N  P  F  S  F  W  N  V  V  F  S  C  *  V  V  C  L  K  L  L  Y  S  E  Q  L  Y  M  C  Y  *  L  *  G  L  F  N  I  Y  A  D  S  Y  Q  L  S  I  T  *  </second_frame>
            <third_frame>   R  Q  K  I  L  N  P  K  H  K  K  R  C  K  H  R  A  E  T  *  S  S  T  S  S  S  L  S  E  N  G  V  I  S  D  N  N  D  E  D  E  V  K  Q  L  L  T  A  V  N  R  R  S  R  S  S  V  F  T  T  S  W  A  P  P  N  S  L  P  F  L  C  G  S  P  L  Q  P  I  F  P  Q  N  H  H  H  S  S  N  V  F  L  L  L  H  H  H  R :   C  D  G  *  *  G  I  G  K  S  D  *  W  E  K  S  C  K  R  C  *  R  *  N  K  C  *  N  N  *  D  E  R  F  D  W  C  C  S  W  P  C  S  Y  T  C  W  G  *  E  G  F  C  N  L  C  S  Q  Q  E  K  S  L  *  N  C  W  D  Q  I  L  *  S  V  F  A  *  E  L  N  R  G  R  S  S  Q  V  Y  F  R  L  Q  *  *  S  Y  G  S  W  N  S  C  S  A  T  I  A  F   : A  Y  G  *  G  E  N  P  T  C  C  L  H  *  E  G  C  G  W  I  P  P  T  K  Y  W  P  A  C  D  A  R  *  R  A  L  I  Y  P  L  Y  T  K  R  M  H  *  A  S  S  S  V  Q  C  G  N  *  G  E  K  S  G  C  H  W  Q  E  Q  Y  S  W  N  A  C  C  P  A  A  A   : E  G  R  C  H  R  Q  H  S  S  F  Q  N  H  *  P  R  G  D  H  K  R  S  R  Y  H  N  R  C  C  R  E  T  K  Y  G  *  R  *  L  D  Q  A  W  G  S  N  Y  *  C  R  D  *  S  C  G   : G  C  Y  K  S  S  R  L  S  T  S  W  R  C  L  L  *  G  G  H  Q  G  C  F  S  Y  Y  S  C  S  W  R  S  W  A  H  D  Y  S  N  A  S  L  Q  Y  F  V  I  S  K  T  N  *  *  L  Q  V  R  F  E  V  Q  *  S  N  Q  V  G  H  I  V  E  L  L  S  C  L  S  C  P  L  V  S  M  Y  L  L  L  *  T  C  S  V  K  N  *  L  *  G  T  K  H  L  N  N  L  Q  L  E  G  Q  *  *  A  T  *  E  V  Q  S  K  L  D  A  M  T  F  F  I  E  F  G  R  E  *  G  L  M  A  E  I  K  S  E  V  K  Q  A  R  P  P  W  F  D  C  T  F  *  T  L  F  P  F  G  M  L  S  S  V  V  E  W  S  V  *  S  S  C  T  R  N  N  C  I  C  A  I  S  C  K  V  C  S  T  Y  M  Q  I  H  I  S  *  V  *  H  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67035" stop="66759"/>
                    <exon start="66192" stop="65867"/>
                    <exon start="65111" stop="64875"/>
                    <exon start="64731" stop="64564"/>
                    <exon start="64275" stop="64105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNTKNGASIGLRLRAQLHLLCQKMASSPITMMKMKLNNCSPPSTAAAAARFLPLLGPHQIRFRSSVAPLYNPSFPRTIITRPTFSSSSIITAAMANEALVKVIDGKKVAKDVRDEINAEITRMKDSIGVVPGLAVILVGDRKDSATYVRNKKKACETAGIKSYEVCLPENSTEEEVLKYISDFNDDPMVHGILVQLPLPSHMDEEKILHAVCIEKDVDGFHPLNIGQLAMRGREPLFIPCTPKGCIELLHRYNVEIKGKKAVVIGRSNIVGMPAALLLQREDATVSIVHSRTTNPEEITREADIIIAAVGKPNMVRGSWIKPGAVIIDVGINPVEDATNPRGYRLVGDVCYEEAIKVASAITPVPGGVGPMTIAMLLSNTLLSAKRINNFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="63672" PGL_stop="63927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63672" e_stop="63927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="63672" e_stop="63927" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63672" stop="63878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63686" stop="63927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63686" stop="63927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTGATATGAATCTGCATATATGTTGAACAAACCTTACAGCTAATAGCACATATACAATTGTTCCGAGTACAAGAGCTTCAGACAGACCACTCAACAACTGAAGACAACATTCCAAAAGGAAAAAGGGTTTAAAATGTGCAATCAAACCATGGTGGGCGAGCTTGTTTCACCTCAGACTTGATTTCCGCCATCAGACCTTATTCCCTACCAAACTCTATAAAGAATGTCATGGCATCCAGCTTTGACTGCACCT</gDNA_template>
            <first_frame> Q  L  I  *  I  C  I  Y  V  E  Q  T  L  Q  L  I  A  H  I  Q  L  F  R  V  Q  E  L  Q  T  D  H  S  T  T  E  D  N  I  P  K  G  K  R  V  *  N  V  Q  S  N  H  G  G  R  A  C  F  T  S  D  L  I  S  A  I  R  P  Y  S  L  P  N  S  I  K  N  V  M  A  S  S  F  D  C  T  </first_frame>
            <second_frame>  N  *  Y  E  S  A  Y  M  L  N  K  P  Y  S  *  *  H  I  Y  N  C  S  E  Y  K  S  F  R  Q  T  T  Q  Q  L  K  T  T  F  Q  K  E  K  G  F  K  M  C  N  Q  T  M  V  G  E  L  V  S  P  Q  T  *  F  P  P  S  D  L  I  P  Y  Q  T  L  *  R  M  S  W  H  P  A  L  T  A  P </second_frame>
            <third_frame>   T  D  M  N  L  H  I  C  *  T  N  L  T  A  N  S  T  Y  T  I  V  P  S  T  R  A  S  D  R  P  L  N  N  *  R  Q  H  S  K  R  K  K  G  L  K  C  A  I  K  P  W  W  A  S  L  F  H  L  R  L  D  F  R  H  Q  T  L  F  P  T  K  L  Y  K  E  C  H  G  I  Q  L  *  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0182E16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="75471" PGL_stop="67513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75471" e_stop="75412"/>
            <exon e_start="75297" e_stop="75178"/>
            <exon e_start="74797" e_stop="74729"/>
            <exon e_start="74526" e_stop="74461"/>
            <exon e_start="74253" e_stop="74164"/>
            <exon e_start="73753" e_stop="73649"/>
            <exon e_start="73547" e_stop="73419"/>
            <exon e_start="73064" e_stop="72855"/>
            <exon e_start="72405" e_stop="72256"/>
            <exon e_start="71215" e_stop="71162"/>
            <exon e_start="71041" e_stop="70983"/>
            <exon e_start="68902" e_stop="68836"/>
            <exon e_start="68765" e_stop="68589"/>
            <exon e_start="68361" e_stop="68305"/>
            <exon e_start="68103" e_stop="68029"/>
            <exon e_start="67916" e_stop="67513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.846" acc_prob="0.982" e_score="0.750"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.618" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.955" e_score="0.990"/>
          <exon-intron don_prob="0.969" acc_prob="0.957" e_score="0.993"/>
          <exon-intron don_prob="0.972" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.947"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.960"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="75471" e_stop="75412" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.846" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75411" i_stop="75298" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75297" e_stop="75178" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75177" i_stop="74798" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74797" e_stop="74729" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.618" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74728" i_stop="74527" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74526" e_stop="74461" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74460" i_stop="74254" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74253" e_stop="74164" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74163" i_stop="73754" i_length="410"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73753" e_stop="73649" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73648" i_stop="73548" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73547" e_stop="73419" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73418" i_stop="73065" i_length="354"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="73064" e_stop="72855" e_length="210"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.955">
            <gDNA_intron_boundary i_start="72854" i_stop="72406" i_length="449"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="72405" e_stop="72256" e_length="150"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.957">
            <gDNA_intron_boundary i_start="72255" i_stop="71216" i_length="1040"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="71215" e_stop="71162" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.972" acc_prob="0.873">
            <gDNA_intron_boundary i_start="71161" i_stop="71042" i_length="120"/>
          </intron>
          <exon e_serial="11" e_score="0.966">
            <gDNA_exon_boundary e_start="71041" e_stop="70983" e_length="59"/>
          </exon>
          <intron i_serial="11" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70982" i_stop="68903" i_length="2080"/>
          </intron>
          <exon e_serial="12" e_score="0.985">
            <gDNA_exon_boundary e_start="68902" e_stop="68836" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70"/>
          </intron>
          <exon e_serial="13" e_score="0.989">
            <gDNA_exon_boundary e_start="68765" e_stop="68589" e_length="177"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227"/>
          </intron>
          <exon e_serial="14" e_score="0.947">
            <gDNA_exon_boundary e_start="68361" e_stop="68305" e_length="57"/>
          </exon>
          <intron i_serial="14" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201"/>
          </intron>
          <exon e_serial="15" e_score="0.960">
            <gDNA_exon_boundary e_start="68103" e_stop="68029" e_length="75"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112"/>
          </intron>
          <exon e_serial="16" e_score="0.896">
            <gDNA_exon_boundary e_start="67916" e_stop="67513" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75471" stop="75412"/>
              <exon start="75297" stop="75178"/>
              <exon start="74797" stop="74729"/>
              <exon start="74526" stop="74461"/>
              <exon start="74253" stop="74164"/>
              <exon start="73753" stop="73649"/>
              <exon start="73547" stop="73419"/>
              <exon start="73064" stop="72899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73541" stop="73419"/>
              <exon start="73064" stop="72855"/>
              <exon start="72405" stop="72292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73533" stop="73419"/>
              <exon start="73064" stop="72855"/>
              <exon start="72405" stop="72256"/>
              <exon start="71215" stop="71162"/>
              <exon start="71041" stop="70983"/>
              <exon start="68902" stop="68836"/>
              <exon start="68765" stop="68616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73533" stop="73419"/>
              <exon start="73064" stop="72855"/>
              <exon start="72405" stop="72256"/>
              <exon start="71215" stop="71178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68902" stop="68836"/>
              <exon start="68765" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68692" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATCTGTTGAGAGACTAAGTTCTATGAAGAAATACGTTTTTGGATTGGGCAGTGCTCAG : GTCTTAGTGACAGCTGTGGTGGTCGGGTTAATTGCTAATTTGGTTGCCGGGCAGGCTGGACCTGCTGCAATTGTGATTGGAAATGGGCTTGCCTTATCTTCCACTGCTGTCGTCCTCCAG : GTATTGCAGGAGCGTGGTGAGAGCACATCACGACATGGACGAGCTACATTTTCTGTATTACTCTTTCAG : GATCTGGCGGTGGTTGTTCTACTCATACTGATACCACTAATTTCACCAAATTCATCAAAAGGAGGG : GTTGGTTTCCGAGCAATAGCTGAGGCTCTTGGTTTGGCTGCTGTAAAGGCAATTGTAGCTATCACTGCCATTATTGCCGGAGGACGTCTG : CTGTTGCGGCCTATTTATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCGGCAAATACGCTCCTTGTTATCCTAGGGACTAGTCTTCTGACTGCCAGG : GCTGGCCTTTCAATGGCTTTGGGTGCATTTTTAGCTGGTCTGCTTCTGGCAGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCATATCGTGGACTCCTGCTGGGTCTCTTTTTCATGACG : GTTGGAATGTCCATTGATCCCAAGCTTCTTCTTTCAAACTTTCCAGTGATTATGGGCTCATTGGGACTTCTATTAGGTGGCAAGACTATCTTGGTTGCATTAATTGGTAAACTGTTTGGTATTTCAATTGTATCGGCAGTAAGAGTGGGTCTCCTACTTGCTCCGGGTGGAGAGTTTGCCTTCGTAGCCTTTGGTGAAGCTGTCAATCAG : GGAATAATGTCTCCTGAATTGTCATCTCTGCTGTTTCTTGTGGTTGGAATTTCAATGGCTCTCACACCATATCTAGCTGCTGGAGGTCAATTAATAGCATCTCGTTTTGAGCTGCAAGATGTGCGAAGTTTATTGCCTGATGAAAGTGAG : ACAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGTCGCGTTGGCCAG : ATCATTGCCCAACTTCTCTCCGAGCGACTGATTCCATTTGTTGCACTTGATGTGCGAAG : TGAGCGTGTTGCAGTTGGTCGTGCACTTGATCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAG : GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCG : GTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAA : GCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAG : CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAACCAAAACGAAGGGAAGATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAACCCCATTTTTAAAAGAATGTACAGAATTATAGCAAGCAAGAAGCTATGCAGGAGAGCAATTTTTTTTTATGGCATAATAACCACTAGGTGATAGACCTTTTAATTGCTTTGGTTCGAAAAGTTGTTGTTTTTGCATTTCAGGATATAAGGTCATCCAGGTAGTTTGCATCGATATAGTTGAATGTAT</gDNA_template>
            <first_frame> L  S  V  E  R  L  S  S  M  K  K  Y  V  F  G  L  G  S  A  Q  :  V  L  V  T  A  V  V  V  G  L  I  A  N  L  V  A  G  Q  A  G  P  A  A  I  V  I  G  N  G  L  A  L  S  S  T  A  V  V  L  Q  :  V  L  Q  E  R  G  E  S  T  S  R  H  G  R  A  T  F  S  V  L  L  F  Q  :  D  L  A  V  V  V  L  L  I  L  I  P  L  I  S  P  N  S  S  K  G  G  :  V  G  F  R  A  I  A  E  A  L  G  L  A  A  V  K  A  I  V  A  I  T  A  I  I  A  G  G  R  L  :  L  L  R  P  I  Y  K  Q  I  A  E  N  Q  N  A  E  I  F  S  A  N  T  L  L  V  I  L  G  T  S  L  L  T  A  R  :  A  G  L  S  M  A  L  G  A  F  L  A  G  L  L  L  A  E  T  E  F  S  L  Q  V  E  S  D  I  A  P  Y  R  G  L  L  L  G  L  F  F  M  T  :  V  G  M  S  I  D  P  K  L  L  L  S  N  F  P  V  I  M  G  S  L  G  L  L  L  G  G  K  T  I  L  V  A  L  I  G  K  L  F  G  I  S  I  V  S  A  V  R  V  G  L  L  L  A  P  G  G  E  F  A  F  V  A  F  G  E  A  V  N  Q  :  G  I  M  S  P  E  L  S  S  L  L  F  L  V  V  G  I  S  M  A  L  T  P  Y  L  A  A  G  G  Q  L  I  A  S  R  F  E  L  Q  D  V  R  S  L  L  P  D  E  S  E  :  T  D  D  L  Q  D  H  I  I  I  C  G  F  G  R  V  G  Q  :  I  I  A  Q  L  L  S  E  R  L  I  P  F  V  A  L  D  V  R  S :   E  R  V  A  V  G  R  A  L  D  L  P  V  Y  F  G  D  A  G  S  R  E  :  V  L  H  K  V  G  A  E  R  A  C  A  A  A  I  T  L  D  T  P  G  A  N  Y  R  T  V  W  A  L  N  K  Y  F  P  N  V  K  T  F  V  R  A  H  D  V  D  H  G  L  N  L  E  K  A  G  A  T  A  :  V  V  P  E  T  L  E  P  S  L  Q  L  A  A  A  V  L  A  Q  :  A  K  L  P  M  S  E  I  A  A  T  I  N  E  F  R  S  R  H  L  S  E  L  T  E  :  L  C  E  T  S  G  S  S  L  G  Y  G  F  S  R  V  V  S  K  A  K  A  Q  A  S  D  S  S  D  E  N  Q  I  G  E  G  T  L  A  I  *  *  P  L  E  E  T  R  I  C  I  A  W  T  Y  N  Q  N  E  G  K  I  V  L  I  S  V  *  C  F  *  L  T  P  F  L  K  E  C  T  E  L  *  Q  A  R  S  Y  A  G  E  Q  F  F  F  M  A  *  *  P  L  G  D  R  P  F  N  C  F  G  S  K  S  C  C  F  C  I  S  G  Y  K  V  I  Q  V  V  C  I  D  I  V  E  C   </first_frame>
            <second_frame>  Y  L  L  R  D  *  V  L  *  R  N  T  F  L  D  W  A  V  L  R :   S  *  *  Q  L  W  W  S  G  *  L  L  I  W  L  P  G  R  L  D  L  L  Q  L  *  L  E  M  G  L  P  Y  L  P  L  L  S  S  S  R :   Y  C  R  S  V  V  R  A  H  H  D  M  D  E  L  H  F  L  Y  Y  S  F  R :   I  W  R  W  L  F  Y  S  Y  *  Y  H  *  F  H  Q  I  H  Q  K  E  G :   L  V  S  E  Q  *  L  R  L  L  V  W  L  L  *  R  Q  L  *  L  S  L  P  L  L  P  E  D  V  C :   C  C  G  L  F  I  S  R  L  Q  R  I  K  M  Q  K  Y  F  R  Q  I  R  S  L  L  S  *  G  L  V  F  *  L  P  G :   L  A  F  Q  W  L  W  V  H  F  *  L  V  C  F  W  Q  K  L  N  F  R  C  K  L  N  Q  I  L  L  H  I  V  D  S  C  W  V  S  F  S  *  R :   L  E  C  P  L  I  P  S  F  F  F  Q  T  F  Q  *  L  W  A  H  W  D  F  Y  *  V  A  R  L  S  W  L  H  *  L  V  N  C  L  V  F  Q  L  Y  R  Q  *  E  W  V  S  Y  L  L  R  V  E  S  L  P  S  *  P  L  V  K  L  S  I  R :   E  *  C  L  L  N  C  H  L  C  C  F  L  W  L  E  F  Q  W  L  S  H  H  I  *  L  L  E  V  N  *  *  H  L  V  L  S  C  K  M  C  E  V  Y  C  L  M  K  V  R :   Q  M  I  C  K  I  I  S  L  F  V  D  L  V  A  L  A  R :   S  L  P  N  F  S  P  S  D  *  F  H  L  L  H  L  M  C  E   : V  S  V  L  Q  L  V  V  H  L  I  F  L  Y  T  L  V  M  L  V  A  E  R :   F  F  I  K  L  E  L  K  E  H  V  L  P  Q  *  H  *  T  L  L  V  Q  I  T  E  L  F  G  P  *  T  S  T  F  P  M  *  K  H  L  Y  V  L  M  M  W  I  M  A  L  I  *  R  R  L  E  Q  Q  R :   L  C  L  R  P  W  N  Q  A  C  S  W  L  L  L  S  L  H  K :   L  S  C  Q  C  R  R  *  Q  Q  Q  S  T  S  S  G  P  A  T  S  L  S  L  L  S :   Y  V  K  L  A  E  V  L  *  A  M  V  F  L  V  L  *  V  K  P  K  L  R  P  Q  T  H  R  M  R  T  K  S  V  K  E  H  *  Q  Y  D  S  H  *  K  K  H  E  S  A  L  L  G  P  T  T  K  T  K  G  R  *  S  L  *  V  Y  S  V  F  S  *  P  H  F  *  K  N  V  Q  N  Y  S  K  Q  E  A  M  Q  E  S  N  F  F  L  W  H  N  N  H  *  V  I  D  L  L  I  A  L  V  R  K  V  V  V  F  A  F  Q  D  I  R  S  S  R  *  F  A  S  I  *  L  N  V  </second_frame>
            <third_frame>   I  C  *  E  T  K  F  Y  E  E  I  R  F  W  I  G  Q  C  S   : G  L  S  D  S  C  G  G  R  V  N  C  *  F  G  C  R  A  G  W  T  C  C  N  C  D  W  K  W  A  C  L  I  F  H  C  C  R  P  P   : G  I  A  G  A  W  *  E  H  I  T  T  W  T  S  Y  I  F  C  I  T  L  S   : G  S  G  G  G  C  S  T  H  T  D  T  T  N  F  T  K  F  I  K  R  R   : G  W  F  P  S  N  S  *  G  S  W  F  G  C  C  K  G  N  C  S  Y  H  C  H  Y  C  R  R  T  S   : A  V  A  A  Y  L  *  A  D  C  R  E  S  K  C  R  N  I  F  G  K  Y  A  P  C  Y  P  R  D  *  S  S  D  C  Q   : G  W  P  F  N  G  F  G  C  I  F  S  W  S  A  S  G  R  N  *  I  F  V  A  S  *  I  R  Y  C  S  I  S  W  T  P  A  G  S  L  F  H  D   : G  W  N  V  H  *  S  Q  A  S  S  F  K  L  S  S  D  Y  G  L  I  G  T  S  I  R  W  Q  D  Y  L  G  C  I  N  W  *  T  V  W  Y  F  N  C  I  G  S  K  S  G  S  P  T  C  S  G  W  R  V  C  L  R  S  L  W  *  S  C  Q  S   : G  N  N  V  S  *  I  V  I  S  A  V  S  C  G  W  N  F  N  G  S  H  T  I  S  S  C  W  R  S  I  N  S  I  S  F  *  A  A  R  C  A  K  F  I  A  *  *  K  *   : D  R  *  F  A  R  S  Y  H  Y  L  W  I  W  S  R  W  P   : D  H  C  P  T  S  L  R  A  T  D  S  I  C  C  T  *  C  A  K  :  *  A  C  C  S  W  S  C  T  *  S  S  C  I  L  W  *  C  W  *  P  R   : G  S  S  *  S  W  S  *  K  S  M  C  C  R  N  N  I  R  H  S  W  C  K  L  Q  N  C  L  G  L  E  Q  V  L  S  Q  C  E  N  I  C  T  C  S  *  C  G  S  W  P  *  F  R  E  G  W  S  N  S   : G  C  A  *  D  L  G  T  K  P  A  V  G  C  C  C  P  C  T   : S  *  A  A  N  V  G  D  S  S  N  N  Q  R  V  Q  V  P  P  P  L  *  A  Y  *   : A  M  *  N  *  R  K  F  S  R  L  W  F  F  S  C  C  E  *  S  Q  S  S  G  L  R  L  I  G  *  E  P  N  R  *  R  N  T  S  N  M  I  A  I  R  R  N  T  N  L  H  C  L  D  L  Q  P  K  R  R  E  D  S  P  Y  K  C  I  V  F  L  V  N  P  I  F  K  R  M  Y  R  I  I  A  S  K  K  L  C  R  R  A  I  F  F  Y  G  I  I  T  T  R  *  *  T  F  *  L  L  W  F  E  K  L  L  F  L  H  F  R  I  *  G  H  P  G  S  L  H  R  Y  S  *  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75471" stop="75412"/>
                    <exon start="75297" stop="75178"/>
                    <exon start="74797" stop="74729"/>
                    <exon start="74526" stop="74461"/>
                    <exon start="74253" stop="74164"/>
                    <exon start="73753" stop="73649"/>
                    <exon start="73547" stop="73419"/>
                    <exon start="73064" stop="72855"/>
                    <exon start="72405" stop="72256"/>
                    <exon start="71215" stop="71162"/>
                    <exon start="71041" stop="70983"/>
                    <exon start="68902" stop="68836"/>
                    <exon start="68765" stop="68589"/>
                    <exon start="68361" stop="68305"/>
                    <exon start="68103" stop="68029"/>
                    <exon start="67916" stop="67794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSVERLSSMKKYVFGLGSAQVLVTAVVVGLIANLVAGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFRAIAEALGLAAVKAIVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLLGGKTILVALIGKLFGISIVSAVRVGLLLAPGGEFAFVAFGEAVNQGIMSPELSSLLFLVVGISMALTPYLAAGGQLIASRFELQDVRSLLPDESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSERVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALNKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCETSGSSLGYGFSRVVSKAKAQASDSSDENQIGEGTLAI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67812" stop="67609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTSNMIAIRRNTNLHCLDLQPKRREDSPYKCIVFLVNPIFKRMYRIIASKKLCRRAIFFYGIITTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68979" e_stop="68836"/>
            <exon e_start="68765" e_stop="68589"/>
            <exon e_start="68361" e_stop="68305"/>
            <exon e_start="68103" e_stop="68029"/>
            <exon e_start="67916" e_stop="67513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.958"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.947"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.960"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="68979" e_stop="68836" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68835" i_stop="68766" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="68765" e_stop="68589" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68588" i_stop="68362" i_length="227"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="68361" e_stop="68305" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68304" i_stop="68104" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="68103" e_stop="68029" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68028" i_stop="67917" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.896">
            <gDNA_exon_boundary e_start="67916" e_stop="67513" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68979" stop="68836"/>
              <exon start="68765" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68952" stop="68836"/>
              <exon start="68765" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68902" stop="68836"/>
              <exon start="68765" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68692" stop="68589"/>
              <exon start="68361" stop="68305"/>
              <exon start="68103" stop="68029"/>
              <exon start="67916" stop="67513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGGTGTTGTTCACTTGTATTATCCAATTATTATCATGATGCTTGTCTTAATAAATGTTTTTTACAATAAATGCAGTGAGCGTGTTGCAGTTGGTCGTGCACTTGATCTTCCTGTATACTTTGGTGATGCTGGTAGCCGAGAG : GTTCTTCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCCGCAATAACATTAGACACTCCTGGTGCAAATTACAGAACTGTTTGGGCCTTGAACAAGTACTTTCCCAATGTGAAAACATTTGTACGTGCTCATGATGTGGATCATGGCCTTAATTTAGAGAAGGCTGGAGCAACAGCG : GTTGTGCCTGAGACCTTGGAACCAAGCCTGCAGTTGGCTGCTGCTGTCCTTGCACAA : GCTAAGCTGCCAATGTCGGAGATAGCAGCAACAATCAACGAGTTCAGGTCCCGCCACCTCTCTGAGCTTACTGAG : CTATGTGAAACTAGCGGAAGTTCTCTAGGCTATGGTTTTTCTCGTGTTGTGAGTAAAGCCAAAGCTCAGGCCTCAGACTCATCGGATGAGAACCAAATCGGTGAAGGAACACTAGCAATATGATAGCCATTAGAAGAAACACGAATCTGCATTGCTTGGACCTACAACCAAAACGAAGGGAAGATAGTCCTTATAAGTGTATAGTGTTTTTAGTTAACCCCATTTTTAAAAGAATGTACAGAATTATAGCAAGCAAGAAGCTATGCAGGAGAGCAATTTTTTTTTATGGCATAATAACCACTAGGTGATAGACCTTTTAATTGCTTTGGTTCGAAAAGTTGTTGTTTTTGCATTTCAGGATATAAGGTCATCCAGGTAGTTTGCATCGATATAGTTGAATGTAT</gDNA_template>
            <first_frame> R  G  V  V  H  L  Y  Y  P  I  I  I  M  M  L  V  L  I  N  V  F  Y  N  K  C  S  E  R  V  A  V  G  R  A  L  D  L  P  V  Y  F  G  D  A  G  S  R  E  :  V  L  H  K  V  G  A  E  R  A  C  A  A  A  I  T  L  D  T  P  G  A  N  Y  R  T  V  W  A  L  N  K  Y  F  P  N  V  K  T  F  V  R  A  H  D  V  D  H  G  L  N  L  E  K  A  G  A  T  A  :  V  V  P  E  T  L  E  P  S  L  Q  L  A  A  A  V  L  A  Q  :  A  K  L  P  M  S  E  I  A  A  T  I  N  E  F  R  S  R  H  L  S  E  L  T  E  :  L  C  E  T  S  G  S  S  L  G  Y  G  F  S  R  V  V  S  K  A  K  A  Q  A  S  D  S  S  D  E  N  Q  I  G  E  G  T  L  A  I  *  *  P  L  E  E  T  R  I  C  I  A  W  T  Y  N  Q  N  E  G  K  I  V  L  I  S  V  *  C  F  *  L  T  P  F  L  K  E  C  T  E  L  *  Q  A  R  S  Y  A  G  E  Q  F  F  F  M  A  *  *  P  L  G  D  R  P  F  N  C  F  G  S  K  S  C  C  F  C  I  S  G  Y  K  V  I  Q  V  V  C  I  D  I  V  E  C   </first_frame>
            <second_frame>  E  V  L  F  T  C  I  I  Q  L  L  S  *  C  L  S  *  *  M  F  F  T  I  N  A  V  S  V  L  Q  L  V  V  H  L  I  F  L  Y  T  L  V  M  L  V  A  E  R :   F  F  I  K  L  E  L  K  E  H  V  L  P  Q  *  H  *  T  L  L  V  Q  I  T  E  L  F  G  P  *  T  S  T  F  P  M  *  K  H  L  Y  V  L  M  M  W  I  M  A  L  I  *  R  R  L  E  Q  Q  R :   L  C  L  R  P  W  N  Q  A  C  S  W  L  L  L  S  L  H  K :   L  S  C  Q  C  R  R  *  Q  Q  Q  S  T  S  S  G  P  A  T  S  L  S  L  L  S :   Y  V  K  L  A  E  V  L  *  A  M  V  F  L  V  L  *  V  K  P  K  L  R  P  Q  T  H  R  M  R  T  K  S  V  K  E  H  *  Q  Y  D  S  H  *  K  K  H  E  S  A  L  L  G  P  T  T  K  T  K  G  R  *  S  L  *  V  Y  S  V  F  S  *  P  H  F  *  K  N  V  Q  N  Y  S  K  Q  E  A  M  Q  E  S  N  F  F  L  W  H  N  N  H  *  V  I  D  L  L  I  A  L  V  R  K  V  V  V  F  A  F  Q  D  I  R  S  S  R  *  F  A  S  I  *  L  N  V  </second_frame>
            <third_frame>   R  C  C  S  L  V  L  S  N  Y  Y  H  D  A  C  L  N  K  C  F  L  Q  *  M  Q  *  A  C  C  S  W  S  C  T  *  S  S  C  I  L  W  *  C  W  *  P  R   : G  S  S  *  S  W  S  *  K  S  M  C  C  R  N  N  I  R  H  S  W  C  K  L  Q  N  C  L  G  L  E  Q  V  L  S  Q  C  E  N  I  C  T  C  S  *  C  G  S  W  P  *  F  R  E  G  W  S  N  S   : G  C  A  *  D  L  G  T  K  P  A  V  G  C  C  C  P  C  T   : S  *  A  A  N  V  G  D  S  S  N  N  Q  R  V  Q  V  P  P  P  L  *  A  Y  *   : A  M  *  N  *  R  K  F  S  R  L  W  F  F  S  C  C  E  *  S  Q  S  S  G  L  R  L  I  G  *  E  P  N  R  *  R  N  T  S  N  M  I  A  I  R  R  N  T  N  L  H  C  L  D  L  Q  P  K  R  R  E  D  S  P  Y  K  C  I  V  F  L  V  N  P  I  F  K  R  M  Y  R  I  I  A  S  K  K  L  C  R  R  A  I  F  F  Y  G  I  I  T  T  R  *  *  T  F  *  L  L  W  F  E  K  L  L  F  L  H  F  R  I  *  G  H  P  G  S  L  H  R  Y  S  *  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68979" stop="68836"/>
                    <exon start="68765" stop="68589"/>
                    <exon start="68361" stop="68305"/>
                    <exon start="68103" stop="68029"/>
                    <exon start="67916" stop="67794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGVVHLYYPIIIMMLVLINVFYNKCSERVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALNKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCETSGSSLGYGFSRVVSKAKAQASDSSDENQIGEGTLAI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67812" stop="67609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTSNMIAIRRNTNLHCLDLQPKRREDSPYKCIVFLVNPIFKRMYRIIASKKLCRRAIFFYGIITTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="90499" PGL_stop="87798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90499" e_stop="90110"/>
            <exon e_start="89254" e_stop="89155"/>
            <exon e_start="89061" e_stop="89036"/>
            <exon e_start="88926" e_stop="88837"/>
            <exon e_start="88427" e_stop="87798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.981" e_score="0.982"/>
          <exon-intron don_prob="0.869" acc_prob="0.834" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90499" e_stop="90110" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.981">
            <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="89254" e_stop="89155" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.834">
            <gDNA_intron_boundary i_start="89154" i_stop="89062" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89061" e_stop="89036" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88926" e_stop="88837" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="88427" e_stop="87798" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90499" stop="90110"/>
              <exon start="89254" stop="89229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90491" stop="90110"/>
              <exon start="89254" stop="89175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90488" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
              <exon start="89254" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90110"/>
              <exon start="89254" stop="89219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90478" stop="90110"/>
              <exon start="89254" stop="89174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90477" stop="90144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90476" stop="90256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90472" stop="90198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90469" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90469" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90469" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90467" stop="90110"/>
              <exon start="89254" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90467" stop="90110"/>
              <exon start="89254" stop="89206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90450" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90437" stop="90110"/>
              <exon start="89254" stop="89161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90436" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90436" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90436" stop="90110"/>
              <exon start="89254" stop="89158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90416" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90408" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90280" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90255" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90214" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90186" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89061" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88859" stop="88837"/>
              <exon start="88427" stop="87798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACTGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG : ATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT : CTAAGTCTGAGAGGCAAAATTCATTG : ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG : GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAATAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAAGAAAAAAAAAAGTACCCTCTCTTCCCTAAGTATTATAATTACATTTAATTGATTGGATCAATTGATCCTTCTATCTATTTTGATAGCTAAAATGTTTGTGTTTATAATATATTAAATTTTTCCTATTTGTTTATATATATATATAGTTATCCAGGGCAACCCCTCATTTGTAATTAATTATATTTTATTGTCTGGATACAATATTCCTTTGTTAATATAATATATAATATATATACATTTTGTGCAATGTTGTGTCAAGATGTATATTTCACATTAACAATATTGGATTTTAATTTTTT</gDNA_template>
            <first_frame> T  N  *  D  R  E  G  A  F  F  C  F  F  N  L  N  N  E  T  G  *  N  I  K  K  K  K  R  K  A  E  H  L  F  V  V  Q  I  S  F  F  I  L  P  Y  F  *  L  *  I  V  I  E  I  E  D  F  Q  A  S  V  N  I  I  I  Y  L  F  I  L  Y  F  L  K  K  Y  K  K  N  I  Y  T  Y  I  I  M  A  F  T  G  T  L  D  K  C  S  A  C  D  K  T  V  Y  F  V  D  L  L  S  A  D  G  V  T  Y  H  K  S  C  F  K  C  S  H  C  K  G  T  L  V  :  M  S  N  Y  S  S  M  D  G  I  L  Y  C  K  T  H  F  E  Q  L  F  K  E  S  G  N  F  S  K  N  F  Q  N   : S  K  S  E  R  Q  N  S  L  :  T  R  A  P  S  K  L  S  A  L  F  S  G  T  Q  D  K  C  A  A  C  D  K  T  V  Y  P  L  E  K  :  V  T  M  E  G  E  S  F  H  K  S  C  F  K  C  A  H  G  G  C  A  L  T  H  A  T  Y  A  S  L  D  G  N  L  Y  C  K  H  H  F  A  Q  L  F  M  E  K  G  N  Y  Q  H  V  L  K  A  A  N  N  K  K  N  S  A  A  V  T  P  L  N  D  D  E  N  N  A  V  E  N  S  S  T  E  E  N  S  N  D  D  N  N  T  N  K  E  P  E  N  A  E  E  S  Q  E  S  *  Y  L  K  K  R  K  K  K  V  P  S  L  P  *  V  L  *  L  H  L  I  D  W  I  N  *  S  F  Y  L  F  *  *  L  K  C  L  C  L  *  Y  I  K  F  F  L  F  V  Y  I  Y  I  *  L  S  R  A  T  P  H  L  *  L  I  I  F  Y  C  L  D  T  I  F  L  C  *  Y  N  I  *  Y  I  Y  I  L  C  N  V  V  S  R  C  I  F  H  I  N  N  I  G  F  *  F  F </first_frame>
            <second_frame>  Q  T  E  I  E  R  V  P  F  F  V  S  L  I  S  I  T  K  Q  V  R  I  L  K  K  K  K  E  R  Q  N  I  F  L  L  Y  K  F  L  F  L  F  C  H  I  S  N  S  E  *  L  L  R  L  K  I  F  R  L  L  *  I  *  L  F  I  Y  L  F  Y  I  F  *  K  N  I  K  K  I  Y  I  H  I  *  *  W  H  S  Q  E  H  W  I  N  A  Q  L  V  I  K  L  F  I  L  L  I  C  C  L  L  M  V  L  L  I  I  N  H  V  S  N  V  A  T  A  K  A  L  L  * :   *  A  I  T  L  P  W  M  E  S  Y  T  A  R  L  I  S  N  N  Y  L  R  N  L  E  I  L  A  R  I  F  R  I  :  L  S  L  R  G  K  I  H  * :   Q  E  L  Q  A  N  F  Q  L  C  S  L  E  P  K  I  N  V  L  L  V  T  K  L  F  T  H  L  K  R :   *  Q  W  K  E  N  H  S  T  N  H  V  S  S  V  H  M  E  V  V  H  L  L  M  Q  P  M  H  P  L  M  E  T  C  I  A  S  I  I  L  L  N  S  S  W  K  K  E  I  T  N  M  S  S  K  L  Q  I  T  K  R  I  V  L  L  *  H  H  *  M  M  M  K  I  M  L  L  K  I  H  Q  Q  K  R  I  V  M  M  I  I  I  L  I  K  S  L  K  M  Q  R  N  H  K  N  H  N  I  *  K  K  E  K  K  K  Y  P  L  F  P  K  Y  Y  N  Y  I  *  L  I  G  S  I  D  P  S  I  Y  F  D  S  *  N  V  C  V  Y  N  I  L  N  F  S  Y  L  F  I  Y  I  Y  S  Y  P  G  Q  P  L  I  C  N  *  L  Y  F  I  V  W  I  Q  Y  S  F  V  N  I  I  Y  N  I  Y  T  F  C  A  M  L  C  Q  D  V  Y  F  T  L  T  I  L  D  F  N  F   </second_frame>
            <third_frame>   K  L  R  *  R  G  C  L  F  L  F  L  *  S  Q  *  R  N  R  L  E  Y  *  K  K  K  K  K  G  R  T  S  F  C  C  T  N  F  F  F  Y  S  A  I  F  L  T  L  N  S  Y  *  D  *  R  F  S  G  F  C  E  Y  N  Y  L  F  I  Y  F  I  F  F  K  K  I  *  K  K  Y  I  Y  I  Y  N  N  G  I  H  R  N  I  G  *  M  L  S  L  *  *  N  C  L  F  C  *  F  V  V  C  *  W  C  Y  L  S  *  I  M  F  Q  M  *  P  L  Q  R  H  S  C   : D  E  Q  L  L  F  H  G  W  N  L  I  L  Q  D  S  F  R  T  T  I  *  G  I  W  K  F  *  Q  E  F  S  E  F :   *  V  *  E  A  K  F  I   : D  K  S  S  K  Q  T  F  S  F  V  L  W  N  P  R  *  M  C  C  L  *  Q  N  C  L  P  T  *  K   : G  D  N  G  R  R  I  I  P  Q  I  M  F  Q  V  C  T  W  R  L  C  T  Y  S  C  N  L  C  I  P  *  W  K  L  V  L  Q  A  S  F  C  S  T  L  H  G  K  R  K  L  P  T  C  P  Q  S  C  K  *  Q  K  E  *  C  C  C  N  T  I  K  *  *  *  K  *  C  C  *  K  F  I  N  R  R  E  *  *  *  *  *  *  Y  *  *  R  A  *  K  C  R  G  I  T  R  I  I  I  F  K  K  K  K  K  K  S  T  L  S  S  L  S  I  I  I  T  F  N  *  L  D  Q  L  I  L  L  S  I  L  I  A  K  M  F  V  F  I  I  Y  *  I  F  P  I  C  L  Y  I  Y  I  V  I  Q  G  N  P  S  F  V  I  N  Y  I  L  L  S  G  Y  N  I  P  L  L  I  *  Y  I  I  Y  I  H  F  V  Q  C  C  V  K  M  Y  I  S  H  *  Q  Y  W  I  L  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90352" stop="90110"/>
                    <exon start="89254" stop="89155"/>
                    <exon start="89061" stop="89036"/>
                    <exon start="88926" stop="88837"/>
                    <exon start="88427" stop="88110"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVIEIEDFQASVNIIIYLFILYFLKKYKKNIYTYIIMAFTGTLDKCSACDKTVYFVDLLSADGVTYHKSCFKCSHCKGTLVMSNYSSMDGILYCKTHFEQLFKESGNFSKNFQNSKSERQNSLTRAPSKLSALFSGTQDKCAACDKTVYPLEKVTMEGESFHKSCFKCAHGGCALTHATYASLDGNLYCKHHFAQLFMEKGNYQHVLKAANNKKNSAAVTPLNDDENNAVENSSTEENSNDDNNTNKEPENAEESQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90499" e_stop="90110"/>
            <exon e_start="89254" e_stop="89155"/>
            <exon e_start="89064" e_stop="89036"/>
            <exon e_start="88926" e_stop="88837"/>
            <exon e_start="88427" e_stop="87798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90499" e_stop="90110" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.981">
            <gDNA_intron_boundary i_start="90109" i_stop="89255" i_length="855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89254" e_stop="89155" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.769">
            <gDNA_intron_boundary i_start="89154" i_stop="89065" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89064" e_stop="89036" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89035" i_stop="88927" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88926" e_stop="88837" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="88836" i_stop="88428" i_length="409"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="88427" e_stop="87798" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90499" stop="90110"/>
              <exon start="89254" stop="89229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90110"/>
              <exon start="89254" stop="89218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90491" stop="90110"/>
              <exon start="89254" stop="89175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90485" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
              <exon start="89254" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90110"/>
              <exon start="89254" stop="89219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90479" stop="90110"/>
              <exon start="89254" stop="89184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90478" stop="90110"/>
              <exon start="89254" stop="89174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90477" stop="90144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90476" stop="90256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90110"/>
              <exon start="89254" stop="89226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90475" stop="90127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90472" stop="90198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90469" stop="90110"/>
              <exon start="89254" stop="89160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90467" stop="90110"/>
              <exon start="89254" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90467" stop="90110"/>
              <exon start="89254" stop="89206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90463" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90437" stop="90110"/>
              <exon start="89254" stop="89161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90436" stop="90110"/>
              <exon start="89254" stop="89158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90367" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90214" stop="90110"/>
              <exon start="89254" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89213" stop="89155"/>
              <exon start="89064" stop="89036"/>
              <exon start="88926" stop="88837"/>
              <exon start="88427" stop="88096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88859" stop="88837"/>
              <exon start="88427" stop="87798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACTGAGATAGAGAGGGTGCCTTTTTTTGTTTCTTTAATCTCAATAACGAAACAGGTTAGAATATTAAAAAAAAAAAAAGAAAGGCAGAACATCTTTTTGTTGTACAAATTTCTTTTTTTATTCTGCCATATTTCTAACTCTGAATAGTTATTGAGATTGAAGATTTTCAGGCTTCTGTGAATATAATTATTTATTTATTTATTTTATATTTTTTAAAAAAATATAAAAAAAATATATATACATATATAATAATGGCATTCACAGGAACATTGGATAAATGCTCAGCTTGTGATAAAACTGTTTATTTTGTTGATTTGTTGTCTGCTGATGGTGTTACTTATCATAAATCATGTTTCAAATGTAGCCACTGCAAAGGCACTCTTGTG : ATGAGCAATTACTCTTCCATGGATGGAATCTTATACTGCAAGACTCATTTCGAACAACTATTTAAGGAATCTGGAAATTTTAGCAAGAATTTTCAGAATT : CAGCTAAGTCTGAGAGGCAAAATTCATTG : ACAAGAGCTCCAAGCAAACTTTCAGCTTTGTTCTCTGGAACCCAAGATAAATGTGCTGCTTGTGACAAAACTGTTTACCCACTTGAAAAG : GTGACAATGGAAGGAGAATCATTCCACAAATCATGTTTCAAGTGTGCACATGGAGGTTGTGCACTTACTCATGCAACCTATGCATCCCTTGATGGAAACTTGTATTGCAAGCATCATTTTGCTCAACTCTTCATGGAAAAAGGAAATTACCAACATGTCCTCAAAGCTGCAAATAACAAAAAGAATAGTGCTGCTGTAACACCATTAAATGATGATGAAAATAATGCTGTTGAAAATTCATCAACAGAAGAGAATAGTAATGATGATAATAATACTAATAAAGAGCCTGAAAATGCAGAGGAATCACAAGAATCATAATATTTAAAAAAAAGAAAAAAAAAAGTACCCTCTCTTCCCTAAGTATTATAATTACATTTAATTGATTGGATCAATTGATCCTTCTATCTATTTTGATAGCTAAAATGTTTGTGTTTATAATATATTAAATTTTTCCTATTTGTTTATATATATATATAGTTATCCAGGGCAACCCCTCATTTGTAATTAATTATATTTTATTGTCTGGATACAATATTCCTTTGTTAATATAATATATAATATATATACATTTTGTGCAATGTTGTGTCAAGATGTATATTTCACATTAACAATATTGGATTTTAATTTTTT</gDNA_template>
            <first_frame> T  N  *  D  R  E  G  A  F  F  C  F  F  N  L  N  N  E  T  G  *  N  I  K  K  K  K  R  K  A  E  H  L  F  V  V  Q  I  S  F  F  I  L  P  Y  F  *  L  *  I  V  I  E  I  E  D  F  Q  A  S  V  N  I  I  I  Y  L  F  I  L  Y  F  L  K  K  Y  K  K  N  I  Y  T  Y  I  I  M  A  F  T  G  T  L  D  K  C  S  A  C  D  K  T  V  Y  F  V  D  L  L  S  A  D  G  V  T  Y  H  K  S  C  F  K  C  S  H  C  K  G  T  L  V  :  M  S  N  Y  S  S  M  D  G  I  L  Y  C  K  T  H  F  E  Q  L  F  K  E  S  G  N  F  S  K  N  F  Q  N   : S  A  K  S  E  R  Q  N  S  L  :  T  R  A  P  S  K  L  S  A  L  F  S  G  T  Q  D  K  C  A  A  C  D  K  T  V  Y  P  L  E  K  :  V  T  M  E  G  E  S  F  H  K  S  C  F  K  C  A  H  G  G  C  A  L  T  H  A  T  Y  A  S  L  D  G  N  L  Y  C  K  H  H  F  A  Q  L  F  M  E  K  G  N  Y  Q  H  V  L  K  A  A  N  N  K  K  N  S  A  A  V  T  P  L  N  D  D  E  N  N  A  V  E  N  S  S  T  E  E  N  S  N  D  D  N  N  T  N  K  E  P  E  N  A  E  E  S  Q  E  S  *  Y  L  K  K  R  K  K  K  V  P  S  L  P  *  V  L  *  L  H  L  I  D  W  I  N  *  S  F  Y  L  F  *  *  L  K  C  L  C  L  *  Y  I  K  F  F  L  F  V  Y  I  Y  I  *  L  S  R  A  T  P  H  L  *  L  I  I  F  Y  C  L  D  T  I  F  L  C  *  Y  N  I  *  Y  I  Y  I  L  C  N  V  V  S  R  C  I  F  H  I  N  N  I  G  F  *  F  F </first_frame>
            <second_frame>  Q  T  E  I  E  R  V  P  F  F  V  S  L  I  S  I  T  K  Q  V  R  I  L  K  K  K  K  E  R  Q  N  I  F  L  L  Y  K  F  L  F  L  F  C  H  I  S  N  S  E  *  L  L  R  L  K  I  F  R  L  L  *  I  *  L  F  I  Y  L  F  Y  I  F  *  K  N  I  K  K  I  Y  I  H  I  *  *  W  H  S  Q  E  H  W  I  N  A  Q  L  V  I  K  L  F  I  L  L  I  C  C  L  L  M  V  L  L  I  I  N  H  V  S  N  V  A  T  A  K  A  L  L  * :   *  A  I  T  L  P  W  M  E  S  Y  T  A  R  L  I  S  N  N  Y  L  R  N  L  E  I  L  A  R  I  F  R  I  :  Q  L  S  L  R  G  K  I  H  * :   Q  E  L  Q  A  N  F  Q  L  C  S  L  E  P  K  I  N  V  L  L  V  T  K  L  F  T  H  L  K  R :   *  Q  W  K  E  N  H  S  T  N  H  V  S  S  V  H  M  E  V  V  H  L  L  M  Q  P  M  H  P  L  M  E  T  C  I  A  S  I  I  L  L  N  S  S  W  K  K  E  I  T  N  M  S  S  K  L  Q  I  T  K  R  I  V  L  L  *  H  H  *  M  M  M  K  I  M  L  L  K  I  H  Q  Q  K  R  I  V  M  M  I  I  I  L  I  K  S  L  K  M  Q  R  N  H  K  N  H  N  I  *  K  K  E  K  K  K  Y  P  L  F  P  K  Y  Y  N  Y  I  *  L  I  G  S  I  D  P  S  I  Y  F  D  S  *  N  V  C  V  Y  N  I  L  N  F  S  Y  L  F  I  Y  I  Y  S  Y  P  G  Q  P  L  I  C  N  *  L  Y  F  I  V  W  I  Q  Y  S  F  V  N  I  I  Y  N  I  Y  T  F  C  A  M  L  C  Q  D  V  Y  F  T  L  T  I  L  D  F  N  F   </second_frame>
            <third_frame>   K  L  R  *  R  G  C  L  F  L  F  L  *  S  Q  *  R  N  R  L  E  Y  *  K  K  K  K  K  G  R  T  S  F  C  C  T  N  F  F  F  Y  S  A  I  F  L  T  L  N  S  Y  *  D  *  R  F  S  G  F  C  E  Y  N  Y  L  F  I  Y  F  I  F  F  K  K  I  *  K  K  Y  I  Y  I  Y  N  N  G  I  H  R  N  I  G  *  M  L  S  L  *  *  N  C  L  F  C  *  F  V  V  C  *  W  C  Y  L  S  *  I  M  F  Q  M  *  P  L  Q  R  H  S  C   : D  E  Q  L  L  F  H  G  W  N  L  I  L  Q  D  S  F  R  T  T  I  *  G  I  W  K  F  *  Q  E  F  S  E  F :   S  *  V  *  E  A  K  F  I   : D  K  S  S  K  Q  T  F  S  F  V  L  W  N  P  R  *  M  C  C  L  *  Q  N  C  L  P  T  *  K   : G  D  N  G  R  R  I  I  P  Q  I  M  F  Q  V  C  T  W  R  L  C  T  Y  S  C  N  L  C  I  P  *  W  K  L  V  L  Q  A  S  F  C  S  T  L  H  G  K  R  K  L  P  T  C  P  Q  S  C  K  *  Q  K  E  *  C  C  C  N  T  I  K  *  *  *  K  *  C  C  *  K  F  I  N  R  R  E  *  *  *  *  *  *  Y  *  *  R  A  *  K  C  R  G  I  T  R  I  I  I  F  K  K  K  K  K  K  S  T  L  S  S  L  S  I  I  I  T  F  N  *  L  D  Q  L  I  L  L  S  I  L  I  A  K  M  F  V  F  I  I  Y  *  I  F  P  I  C  L  Y  I  Y  I  V  I  Q  G  N  P  S  F  V  I  N  Y  I  L  L  S  G  Y  N  I  P  L  L  I  *  Y  I  I  Y  I  H  F  V  Q  C  C  V  K  M  Y  I  S  H  *  Q  Y  W  I  L  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90352" stop="90110"/>
                    <exon start="89254" stop="89155"/>
                    <exon start="89064" stop="89036"/>
                    <exon start="88926" stop="88837"/>
                    <exon start="88427" stop="88110"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVIEIEDFQASVNIIIYLFILYFLKKYKKNIYTYIIMAFTGTLDKCSACDKTVYFVDLLSADGVTYHKSCFKCSHCKGTLVMSNYSSMDGILYCKTHFEQLFKESGNFSKNFQNSAKSERQNSLTRAPSKLSALFSGTQDKCAACDKTVYPLEKVTMEGESFHKSCFKCAHGGCALTHATYASLDGNLYCKHHFAQLFMEKGNYQHVLKAANNKKNSAAVTPLNDDENNAVENSSTEENSNDDNNTNKEPENAEESQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93328" PGL_stop="92458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93328" e_stop="93219"/>
            <exon e_start="93048" e_stop="92458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.507" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93328" e_stop="93219" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.507">
            <gDNA_intron_boundary i_start="93218" i_stop="93049" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93048" e_stop="92458" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93328" stop="93219"/>
              <exon start="93048" stop="92458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTTGGCGCTTTTCTTAGTTTTTAAGCTATTTGTGGCAGTTTGAACTAATTTAACAGGTCAGTTATAAGCAGATGGGAGGTTTGCTTCTTCAGGTACATAAGACCAAG : ACAAAATGATATTAAGCTGAAATCATTGCTGGAGGAGCTTTGAATCCAACTGGAAGACAAGTAATGAAGTAAACAGTGACCTTATGCTTGAGCCTTCGAAAGATTAAAGCTCTTTCTCCTTTCCAATGGAAAACTGCTATAAATATTTTCTTGATGAAAGTCTTCTCTTCACTTCTTGGCATTACTGTTGCAGCCTCCTCTTCTTTGTTTTCTCCATCTTCCACTGAATCTCCCCAATGAAGTGGATAGCTCCTCAGGAACACTCTTCTGTTATTGTAGTCTTCATTACGAAAACTTCTTGATCTAGCACCATTTTCCTTTGAAATTGTAGCATCCATGAGCCAAGATATTAGTAAATCTTGTGCAGGCTCTGCTTTATAATAACTAAGTGGATACTTAGAATGTGCTTATGTCTATGAAAAAAGAGAGAAACGACAAGTTTTCACCTAGAAAAATGAGGCTGGGGGGAATAATTTAATCACTTCGTTTGGTACTTTTAGTTGTTTCTTGTCTTTTCAAGAGTTGTTATTTGTACTATAGCCTAAAAGCTATATCTTTTCATTATTTGGAAAAATAAATTAAACCTATTTT</gDNA_template>
            <first_frame> *  L  G  A  F  L  S  F  *  A  I  C  G  S  L  N  *  F  N  R  S  V  I  S  R  W  E  V  C  F  F  R  Y  I  R  P  R :   Q  N  D  I  K  L  K  S  L  L  E  E  L  *  I  Q  L  E  D  K  *  *  S  K  Q  *  P  Y  A  *  A  F  E  R  L  K  L  F  L  L  S  N  G  K  L  L  *  I  F  S  *  *  K  S  S  L  H  F  L  A  L  L  L  Q  P  P  L  L  C  F  L  H  L  P  L  N  L  P  N  E  V  D  S  S  S  G  T  L  F  C  Y  C  S  L  H  Y  E  N  F  L  I  *  H  H  F  P  L  K  L  *  H  P  *  A  K  I  L  V  N  L  V  Q  A  L  L  Y  N  N  *  V  D  T  *  N  V  L  M  S  M  K  K  E  R  N  D  K  F  S  P  R  K  M  R  L  G  G  I  I  *  S  L  R  L  V  L  L  V  V  S  C  L  F  K  S  C  Y  L  Y  Y  S  L  K  A  I  S  F  H  Y  L  E  K  *  I  K  P  I   </first_frame>
            <second_frame>  N  L  A  L  F  L  V  F  K  L  F  V  A  V  *  T  N  L  T  G  Q  L  *  A  D  G  R  F  A  S  S  G  T  *  D  Q   : D  K  M  I  L  S  *  N  H  C  W  R  S  F  E  S  N  W  K  T  S  N  E  V  N  S  D  L  M  L  E  P  S  K  D  *  S  S  F  S  F  P  M  E  N  C  Y  K  Y  F  L  D  E  S  L  L  F  T  S  W  H  Y  C  C  S  L  L  F  F  V  F  S  I  F  H  *  I  S  P  M  K  W  I  A  P  Q  E  H  S  S  V  I  V  V  F  I  T  K  T  S  *  S  S  T  I  F  L  *  N  C  S  I  H  E  P  R  Y  *  *  I  L  C  R  L  C  F  I  I  T  K  W  I  L  R  M  C  L  C  L  *  K  K  R  E  T  T  S  F  H  L  E  K  *  G  W  G  E  *  F  N  H  F  V  W  Y  F  *  L  F  L  V  F  S  R  V  V  I  C  T  I  A  *  K  L  Y  L  F  I  I  W  K  N  K  L  N  L  F  </second_frame>
            <third_frame>   T  W  R  F  S  *  F  L  S  Y  L  W  Q  F  E  L  I  *  Q  V  S  Y  K  Q  M  G  G  L  L  L  Q  V  H  K  T  K  :  T  K  *  Y  *  A  E  I  I  A  G  G  A  L  N  P  T  G  R  Q  V  M  K  *  T  V  T  L  C  L  S  L  R  K  I  K  A  L  S  P  F  Q  W  K  T  A  I  N  I  F  L  M  K  V  F  S  S  L  L  G  I  T  V  A  A  S  S  S  L  F  S  P  S  S  T  E  S  P  Q  *  S  G  *  L  L  R  N  T  L  L  L  L  *  S  S  L  R  K  L  L  D  L  A  P  F  S  F  E  I  V  A  S  M  S  Q  D  I  S  K  S  C  A  G  S  A  L  *  *  L  S  G  Y  L  E  C  A  Y  V  Y  E  K  R  E  K  R  Q  V  F  T  *  K  N  E  A  G  G  N  N  L  I  T  S  F  G  T  F  S  C  F  L  S  F  Q  E  L  L  F  V  L  *  P  K  S  Y  I  F  S  L  F  G  K  I  N  *  T  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0182E16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92711" PGL_stop="93202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92711" e_stop="93202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92711" e_stop="93202" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGATGCTACAATTTCAAAGGAAAATGGTGCTAGATCAAGAAGTTTTCGTAATGAAGACTACAATAACAGAAGAGTGTTCCTGAGGAGCTATCCACTTCATTGGGGAGATTCAGTGGAAGATGGAGAAAACAAAGAAGAGGAGGCTGCAACAGTAATGCCAAGAAGTGAAGAGAAGACTTTCATCAAGAAAATATTTATAGCAGTTTTCCATTGGAAAGGAGAAAGAGCTTTAATCTTTCGAAGGCTCAAGCATAAGGTCACTGTTTACTTCATTACTTGTCTTCCAGTTGGATTCAAAGCTCCTCCAGCAATGATTTCAGCTTAATATCATTTTGTCTACCATAAAAAACTACTATCAATAGTTGAAATTCCATCTACTTTACTAAGCATATATCGACTATCGTTCACAGTAATGTGTTTAATTTCAGTACAACTGAAAGGCATGTACAGAAGAGTGGAAGTAGTAAGATGAATACTATATTGCTAACTT</gDNA_template>
            <first_frame> M  D  A  T  I  S  K  E  N  G  A  R  S  R  S  F  R  N  E  D  Y  N  N  R  R  V  F  L  R  S  Y  P  L  H  W  G  D  S  V  E  D  G  E  N  K  E  E  E  A  A  T  V  M  P  R  S  E  E  K  T  F  I  K  K  I  F  I  A  V  F  H  W  K  G  E  R  A  L  I  F  R  R  L  K  H  K  V  T  V  Y  F  I  T  C  L  P  V  G  F  K  A  P  P  A  M  I  S  A  *  Y  H  F  V  Y  H  K  K  L  L  S  I  V  E  I  P  S  T  L  L  S  I  Y  R  L  S  F  T  V  M  C  L  I  S  V  Q  L  K  G  M  Y  R  R  V  E  V  V  R  *  I  L  Y  C  *  L </first_frame>
            <second_frame>  W  M  L  Q  F  Q  R  K  M  V  L  D  Q  E  V  F  V  M  K  T  T  I  T  E  E  C  S  *  G  A  I  H  F  I  G  E  I  Q  W  K  M  E  K  T  K  K  R  R  L  Q  Q  *  C  Q  E  V  K  R  R  L  S  S  R  K  Y  L  *  Q  F  S  I  G  K  E  K  E  L  *  S  F  E  G  S  S  I  R  S  L  F  T  S  L  L  V  F  Q  L  D  S  K  L  L  Q  Q  *  F  Q  L  N  I  I  L  S  T  I  K  N  Y  Y  Q  *  L  K  F  H  L  L  Y  *  A  Y  I  D  Y  R  S  Q  *  C  V  *  F  Q  Y  N  *  K  A  C  T  E  E  W  K  *  *  D  E  Y  Y  I  A  N   </second_frame>
            <third_frame>   G  C  Y  N  F  K  G  K  W  C  *  I  K  K  F  S  *  *  R  L  Q  *  Q  K  S  V  P  E  E  L  S  T  S  L  G  R  F  S  G  R  W  R  K  Q  R  R  G  G  C  N  S  N  A  K  K  *  R  E  D  F  H  Q  E  N  I  Y  S  S  F  P  L  E  R  R  K  S  F  N  L  S  K  A  Q  A  *  G  H  C  L  L  H  Y  L  S  S  S  W  I  Q  S  S  S  S  N  D  F  S  L  I  S  F  C  L  P  *  K  T  T  I  N  S  *  N  S  I  Y  F  T  K  H  I  S  T  I  V  H  S  N  V  F  N  F  S  T  T  E  R  H  V  Q  K  S  G  S  S  K  M  N  T  I  L  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92711" stop="93037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDATISKENGARSRSFRNEDYNNRRVFLRSYPLHWGDSVEDGENKEEEAATVMPRSEEKTFIKKIFIAVFHWKGERALIFRRLKHKVTVYFITCLPVGFKAPPAMISA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="94302" PGL_stop="93455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94302" e_stop="93568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="94302" e_stop="93568" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94302" stop="93568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAACAAGAAATAAAATTATGCAATCAGACGGTCTGGCTAGCCCTAAAAACGTAATACGGACCACTTCATTCCATGAATCAGTCTTGCAATCACTTGCAACGGAAACTACTTTGAATCACAAAGAAGGCTCACCGCAAATTGAGCTGATCTCCCCTGCTCCACATGACAGGAAGATTCCTATTTATGATTTTGCACATAGCAGAGCTGGTGATAAAGGAGATGATATAAACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAAGTATGTTGTAGTACCAATACATGTTCATAAACAAGC</gDNA_template>
            <first_frame> S  N  K  K  *  N  Y  A  I  R  R  S  G  *  P  *  K  R  N  T  D  H  F  I  P  *  I  S  L  A  I  T  C  N  G  N  Y  F  E  S  Q  R  R  L  T  A  N  *  A  D  L  P  C  S  T  *  Q  E  D  S  Y  L  *  F  C  T  *  Q  S  W  *  *  R  R  *  Y  K  L  F  P  Y  P  I  F  S  S  R  Y  *  K  A  *  E  D  C  N  S  R  M  G  E  K  S  C  L  M  S  S  *  S  L  F  V  S  H  F  *  *  Y  *  T  K  R  Q  M  G  H  *  T  C  *  S  G  D  L  *  S  Q  R  D  P  F  Y  E  Y  S  G  S  *  Y  P  R  W  R  C  E  L  L  K  E  N  R  *  A  W  K  D  S  I  R  S  H  I  V  P  E  S  I  I  A  S  V  I  E  H  M  A  R  L  E  *  T  H  W  L  W  L  H  F  L  Y  P  G  R  *  Y  *  Q  W  V  G  D  K  L  L  T  *  L  Q  V  G  V  Y  *  K  L  K  I  C  F  *  N  K  V  C  C  S  T  N  T  C  S  *  T  S </first_frame>
            <second_frame>  A  T  R  N  K  I  M  Q  S  D  G  L  A  S  P  K  N  V  I  R  T  T  S  F  H  E  S  V  L  Q  S  L  A  T  E  T  T  L  N  H  K  E  G  S  P  Q  I  E  L  I  S  P  A  P  H  D  R  K  I  P  I  Y  D  F  A  H  S  R  A  G  D  K  G  D  D  I  N  F  S  L  I  P  Y  F  P  P  D  I  E  R  L  K  K  I  V  T  Q  E  W  V  K  K  V  V  S  C  L  L  N  P  S  S  F  P  T  S  D  D  I  E  R  R  D  K  W  V  T  E  H  V  E  V  E  I  Y  E  V  R  G  I  H  S  M  N  I  V  V  R  N  I  L  D  G  G  V  N  C  S  R  R  I  D  R  H  G  K  T  L  S  D  L  I  L  C  Q  K  V  L  L  P  L  *  L  N  I  W  Q  D  W  N  R  H  T  G  S  G  S  I  F  F  I  L  G  G  D  I  D  S  G  L  G  T  S  S  *  P  S  Y  K  L  E  Y  I  R  N  *  R  F  V  F  E  I  K  Y  V  V  V  P  I  H  V  H  K  Q   </second_frame>
            <third_frame>   Q  Q  E  I  K  L  C  N  Q  T  V  W  L  A  L  K  T  *  Y  G  P  L  H  S  M  N  Q  S  C  N  H  L  Q  R  K  L  L  *  I  T  K  K  A  H  R  K  L  S  *  S  P  L  L  H  M  T  G  R  F  L  F  M  I  L  H  I  A  E  L  V  I  K  E  M  I  *  T  F  P  L  S  H  I  F  L  Q  I  L  K  G  L  R  R  L  *  L  K  N  G  *  K  K  L  S  H  V  F  L  I  P  L  R  F  P  L  L  M  I  L  N  E  E  T  N  G  S  L  N  M  L  K  W  R  F  M  K  S  E  G  S  I  L  *  I  *  W  F  V  I  S  *  M  E  V  *  T  A  Q  G  E  S  I  G  M  E  R  L  Y  P  I  S  Y  C  A  R  K  Y  Y  C  L  C  N  *  T  Y  G  K  T  G  I  D  T  L  A  L  A  P  F  S  L  S  W  E  V  I  L  T  V  G  W  G  Q  A  P  N  L  A  T  S  W  S  I  L  E  T  E  D  L  F  L  K  *  S  M  L  *  Y  Q  Y  M  F  I  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94301" stop="93756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATRNKIMQSDGLASPKNVIRTTSFHESVLQSLATETTLNHKEGSPQIELISPAPHDRKIPIYDFAHSRAGDKGDDINFSLIPYFPPDIERLKKIVTQEWVKKVVSCLLNPSSFPTSDDIERRDKWVTEHVEVEIYEVRGIHSMNIVVRNILDGGVNCSRRIDRHGKTLSDLILCQKVLLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94068" e_stop="93604"/>
            <exon e_start="93527" e_stop="93455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94068" e_stop="93604" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="93603" i_stop="93528" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93527" e_stop="93455" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94068" stop="93604"/>
              <exon start="93527" stop="93455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCATGTCTTCTTAATCCCTCTTCGTTTCCCACTTCTGATGATATTGAACGAAGAGACAAATGGGTCACTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTATGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTATTATTGCCTCTGTAATTGAACATATGGCAAGACTGGAATAGACACACTGGCTCTGGCTCCATTTTCTTTATCCTGGGAGGTGATATTGACAGTGGGTTGGGGACAAGCTCCTAACCTAGCTACAAGTTGGAGTATATTAGAAACTGAAGATTTGTTTTTGAAATAAA : AGTTTTTCACTCTTTGTGAAAGCCATGAATGTCACAGGTACAGAATCAGAATTTGTTAGTGCACAACATGGAT</gDNA_template>
            <first_frame> F  P  Y  P  I  F  S  S  R  Y  *  K  A  *  E  D  C  N  S  R  M  G  E  K  S  C  L  M  S  S  *  S  L  F  V  S  H  F  *  *  Y  *  T  K  R  Q  M  G  H  *  T  C  *  S  G  D  L  *  S  Q  R  D  P  F  Y  E  Y  S  G  S  *  Y  P  R  W  R  C  E  L  L  K  E  N  R  *  A  W  K  D  S  I  R  S  H  I  V  P  E  S  I  I  A  S  V  I  E  H  M  A  R  L  E  *  T  H  W  L  W  L  H  F  L  Y  P  G  R  *  Y  *  Q  W  V  G  D  K  L  L  T  *  L  Q  V  G  V  Y  *  K  L  K  I  C  F  *  N  K  :  S  F  S  L  F  V  K  A  M  N  V  T  G  T  E  S  E  F  V  S  A  Q  H  G  </first_frame>
            <second_frame>  S  L  I  P  Y  F  P  P  D  I  E  R  L  K  K  I  V  T  Q  E  W  V  K  K  V  V  S  C  L  L  N  P  S  S  F  P  T  S  D  D  I  E  R  R  D  K  W  V  T  E  H  V  E  V  E  I  Y  E  V  R  G  I  H  S  M  N  I  V  V  R  N  I  L  D  G  G  V  N  C  S  R  R  I  D  R  H  G  K  T  L  S  D  L  I  L  C  Q  K  V  L  L  P  L  *  L  N  I  W  Q  D  W  N  R  H  T  G  S  G  S  I  F  F  I  L  G  G  D  I  D  S  G  L  G  T  S  S  *  P  S  Y  K  L  E  Y  I  R  N  *  R  F  V  F  E  I  K :   V  F  H  S  L  *  K  P  *  M  S  Q  V  Q  N  Q  N  L  L  V  H  N  M  D </second_frame>
            <third_frame>   P  L  S  H  I  F  L  Q  I  L  K  G  L  R  R  L  *  L  K  N  G  *  K  K  L  S  H  V  F  L  I  P  L  R  F  P  L  L  M  I  L  N  E  E  T  N  G  S  L  N  M  L  K  W  R  F  M  K  S  E  G  S  I  L  *  I  *  W  F  V  I  S  *  M  E  V  *  T  A  Q  G  E  S  I  G  M  E  R  L  Y  P  I  S  Y  C  A  R  K  Y  Y  C  L  C  N  *  T  Y  G  K  T  G  I  D  T  L  A  L  A  P  F  S  L  S  W  E  V  I  L  T  V  G  W  G  Q  A  P  N  L  A  T  S  W  S  I  L  E  T  E  D  L  F  L  K  *   : K  F  F  T  L  C  E  S  H  E  C  H  R  Y  R  I  R  I  C  *  C  T  T  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0182E16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94067" stop="93756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLIPYFPPDIERLKKIVTQEWVKKVVSCLLNPSSFPTSDDIERRDKWVTEHVEVEIYEVRGIHSMNIVVRNILDGGVNCSRRIDRHGKTLSDLILCQKVLLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 208 chains have been computed
$ 
$ memory statistics:
$ 499936 bytes spliced alignments in total
$ 150 spliced alignments have been stored
$ 3332 bytes was the average size of a spliced alignment
$ 28704 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1913 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 227 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:47:12
-->
