<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:58:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722145" ref_strand="+" ref_description="SGN-E722145 [FC16BE01]">
      <seq>atcggccgaattgaacttcttcttctcttctaccccttaagatttagcagaacaaatctgttagcaatggcggcgtcttcagctatagcttcaagttctacaactttcatcaataagaaagatgtgggtctatctgccttctcttcacaagcttcattttccgttcaaactgctcggaaaaggatatccaagagaattgtttctgtgatgacacctcagcagactgaaagaaaacctgccacaactggatcagtaaagactggtatgactatgactgagaagatattagctaaggcttctgataagcctgatgtgagccctggtgataatgtctgggtgaatgttgatgttctgatgactcatgatgtttgtggccctggctctattggaattttcaagaaagagtttggacagaatgctaaggtctgggatcgtgaaaagcttgtcattatacctgaccattacatattcacaaccgacgaacgagcaaaccgtaacgtggatatcttgagggatttctgcaatgaacaaaatattaagtacttctatgacattaaagatttggggaacttccgtgctaatcctgattacaagggtgtctgccacgttgctcttgcacaagaaggtcactgcagacctggagaggttttgctgggtacagactcccacacatgtactgctggagctttcgggcaattcgccactggaattggcaatactgatgcaggttttgtgttgggtactggcaagattctgctcaaggtgcctccaactttgagatttgtaatggatggtgaaatgcctgattacttgcttgctaaggacttaattttgcaaattattggtgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="1" stop="3396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="273" g_stop="373" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="117" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="774" g_stop="908" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="252" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="994" g_stop="1164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="423" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1932" g_stop="2084" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="576" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2190" g_stop="2258" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="645" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2355" g_stop="2471" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="762" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3015" g_stop="3089" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="837" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3232" g_stop="3246" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="852" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722145" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="273" e_stop="373"/>
          <exon e_start="774" e_stop="908"/>
          <exon e_start="994" e_stop="1164"/>
          <exon e_start="1932" e_stop="2084"/>
          <exon e_start="2190" e_stop="2258"/>
          <exon e_start="2355" e_stop="2471"/>
          <exon e_start="3015" e_stop="3089"/>
          <exon e_start="3232" e_stop="3246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTCTTCGACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAGGTTTGTGTGTGTTTTATATGATTGAATTAAGATGCCCCTTTGATGCAAAATTAAGTTTTTTTTTCTTCTCATTATGAGTGAATTTACGCTGACCCTTTTGCTGATATGCTCTTATTTGCTGCAAAAATCAAGACTTTTCCCATTATTGAGGAGATTAATGCTAACCCTTTTGCTGATTTTCTCATATTTGCTGCAAATATTAAGATTTCTTCCGTTATGAGTGGATTTGCACTGACCCTTTTGCTGATTTTCTCAAATTTGCTGCAAAAGTCAAGATCTTTTTTCCGTTTTGAAGAAATTTGTGCTGACTCTTTTGCGGATTTTCTCATATTTATTGCAAAATTCAAGTTTTCTTCAGTTTTGAGGAGATCTGTGCTGACCCTTTTGCTGTTTTGTATAGAAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCAGTATGCATTTCCGATTGGTTTTTGTGCTCTTAATTGTAAAAAAAGGGGTTGACTCTTTTATCATGGTTTTTTTGATTGTTGTTAGGTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAGGTATATATGCTGCCAGTGGAATAACTTTCTTAGTGCAAATTGATTGTCTTGCTATTTTGGTTGAGTAAATTTGAATTTGCTTCGAGTACTTGAAAACTGATTCTTAGCTAGTGTTTGGCCATAGATATAGACATATAGTTGAAACTTGAAAAAAAGAGTTTTTGAAGTTTGTTGTTAGATAATTTTTGGAACTTGAAATTGTGTTTGGACATGCATTTTTATTAGTGCAAATTGATTGTCTTGCAATTTTGGCAGTGTAAATTTGATCTTGCTTTGAGTACTTGAAAACAGATTCTCAGCTAGCGTTTGGTCGTGCATGCATTGAACTTTGAAAAAATTGAAGTTTTGTGAGTGAAGGTGAAATTTCACCCTAAAATTGGTCTGGGCTAGTTTTTGGAACATGAAATTCTTCAAAAACTGACTAAATTTCATGGACAAACAATATTGAATCATTTTCTTTTTTTAAAAACAATCTACTCCCAGAATCTATGACCAAATGGGAGCTATTAGTTTGCTACTTTTCTTCATTACCTGGTTGTGTAGTAGCTATATGTACTGATTGAAGTTTCTTTAGTTCTCTGGTGGTCCGGTAATGGTGTTTATTAAATGTGGAAAATATGAACTAAAGACTGTTTCTCAAGCTCACACTTATTTTGTTGATTAGATGCTGAACTAAAGACTGTTTCTCAAGCTCGCGCTTATTTTGTTGATAGATGCATTATTCGGATGATATATCTAATGGATGTTTCCTTATTTCAATATCATAGGTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGTGTATGGCTATTTACCTCTAATAATGCCTTATTATGTGCTCTGCCGAAGCTGTTGCTTTCTTTGTCTGCTCATAGCAAATGAAAAAAACTAAATGATACTATACAGGCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTGAATGAATAATCTTTGCCGAGATCCACACTGTCAAGACATTTTGATATGTATATGCATATGCTTTAACTTTATGAAGCCTATGTTTGTTGCCAGGTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAGGTAGCAATTCTTGTCTTTATGGGATACAGTTCTGGATTCACAGTTATGTTGTTTGATTTTATTGCCAATATGAAATTCCTAATTATATATCCCGAGAAGTTTTATCTACATTTTCTACTGTTGCATATAGGCGTAACTCACTCTCTTTTTTGGTGTCCCTTACCAAAGAATTAACCTTTTTTAGATAACAGATGACAGTGCTAAGCTAAAGACTTACAATAGTAAATTATAAGCTCATAAGGCATGTCACTGAGCTTGTTCTCCTTTGCATCTCACAAGATGAACGAGAACAAGTAACCATAGCATTCTTCTTAAACACGTTTCAATGCATTTAAAAGGAGGAAAAACAATATGCAGCAAAAAATGTATTAAAGAAACATGATGTAGACTTCTTCATTTTCTATTTGAAGATTGAAGATTGAAGAATGAACAAGAACTGACAGTCACACGTGTCTCTTCGACATTTTGTATTTTTTGTGGTTAAATAACTTCTCTTTCTGCAAATGTATATCATCTACGAAATTTAATATTTGTATGATGCAGGTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAAGTAAGTTTTGCTAGATGCTCTATTCTTCATTTTTGTGTGTTGATATGATTTGTTACGTCTGTTATTCTGTTTCTTTATAACGTTGTTGGATTGATAAGAATCCAAAGTTCAAATTCTTGTCCTTTGCTTTTGAAAATTGCAGATTATTGGTGAAATT</genome_strand>
        <mrna_strand>TTCTTCTTCTCTTCTACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA.....................................................................................GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT.........................................................................................................GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG................................................................................................GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTCGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA..............................................................................................................................................ATTATTGGTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721720" ref_strand="+" ref_description="SGN-E721720 [FC15AA11]">
      <seq>gcgattggcggccaatcggccgaattgagcagaacaaatctgtcagcaatggcggcgtcttcagctatagcttcaagttctacaactttcatcaataagaaagatgtgggtctatctgccttctcttcacaagcttcattttccgttcaaactgctcggaaaaggatatccaagagaattgtttctgtgatgacacctcagcagactgaaagaaaacctgccacaactggatcagtaaagactggtatgactatgactgagaagatattagctaaggcttctgataagcctgatgtgagccctggtgataatgtctgggtgaatgttgatgttctgatgactcatgatgtttgtggccctggctctattggaattttcaagaaagagtttggacagaatgctaaggtctgggatcgtgaaaagcttgtcattatacctgaccattacatattcacaaccgacgaacgagcaaaccgtaacgtggatatcttgagggatttctgcaatgaacaaaatattaagtacttctatgacattaaagatttggggaacttccgtgctaatcctgattacaagggtgtctgccacgttgctcttgcacaagaaggtcactgcagacctggagaggttttgctgggtacagactcccacacatgtactgctggagctttcgggcaattcgccactggaattggcaatactgatgcaggttttgtgttgggtactggcaagattctgctcaaggtgcctccaactttgagatttgtaatggatggtgaaatgcctgattacttgcttgctaaggacttaattttgcaaattattggtgaaatttcagtggctggtgctacttataaagcaatggagtttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="1" stop="3587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="298" g_stop="373" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="99" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="774" g_stop="908" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="234" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="994" g_stop="1164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="405" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1932" g_stop="2084" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="558" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2190" g_stop="2258" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="627" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2355" g_stop="2471" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="744" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3015" g_stop="3089" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="819" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3232" g_stop="3287" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="875" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E721720" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="298" e_stop="373"/>
          <exon e_start="774" e_stop="908"/>
          <exon e_start="994" e_stop="1164"/>
          <exon e_start="1932" e_stop="2084"/>
          <exon e_start="2190" e_stop="2258"/>
          <exon e_start="2355" e_stop="2471"/>
          <exon e_start="3015" e_stop="3089"/>
          <exon e_start="3232" e_stop="3287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAGGTTTGTGTGTGTTTTATATGATTGAATTAAGATGCCCCTTTGATGCAAAATTAAGTTTTTTTTTCTTCTCATTATGAGTGAATTTACGCTGACCCTTTTGCTGATATGCTCTTATTTGCTGCAAAAATCAAGACTTTTCCCATTATTGAGGAGATTAATGCTAACCCTTTTGCTGATTTTCTCATATTTGCTGCAAATATTAAGATTTCTTCCGTTATGAGTGGATTTGCACTGACCCTTTTGCTGATTTTCTCAAATTTGCTGCAAAAGTCAAGATCTTTTTTCCGTTTTGAAGAAATTTGTGCTGACTCTTTTGCGGATTTTCTCATATTTATTGCAAAATTCAAGTTTTCTTCAGTTTTGAGGAGATCTGTGCTGACCCTTTTGCTGTTTTGTATAGAAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCAGTATGCATTTCCGATTGGTTTTTGTGCTCTTAATTGTAAAAAAAGGGGTTGACTCTTTTATCATGGTTTTTTTGATTGTTGTTAGGTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAGGTATATATGCTGCCAGTGGAATAACTTTCTTAGTGCAAATTGATTGTCTTGCTATTTTGGTTGAGTAAATTTGAATTTGCTTCGAGTACTTGAAAACTGATTCTTAGCTAGTGTTTGGCCATAGATATAGACATATAGTTGAAACTTGAAAAAAAGAGTTTTTGAAGTTTGTTGTTAGATAATTTTTGGAACTTGAAATTGTGTTTGGACATGCATTTTTATTAGTGCAAATTGATTGTCTTGCAATTTTGGCAGTGTAAATTTGATCTTGCTTTGAGTACTTGAAAACAGATTCTCAGCTAGCGTTTGGTCGTGCATGCATTGAACTTTGAAAAAATTGAAGTTTTGTGAGTGAAGGTGAAATTTCACCCTAAAATTGGTCTGGGCTAGTTTTTGGAACATGAAATTCTTCAAAAACTGACTAAATTTCATGGACAAACAATATTGAATCATTTTCTTTTTTTAAAAACAATCTACTCCCAGAATCTATGACCAAATGGGAGCTATTAGTTTGCTACTTTTCTTCATTACCTGGTTGTGTAGTAGCTATATGTACTGATTGAAGTTTCTTTAGTTCTCTGGTGGTCCGGTAATGGTGTTTATTAAATGTGGAAAATATGAACTAAAGACTGTTTCTCAAGCTCACACTTATTTTGTTGATTAGATGCTGAACTAAAGACTGTTTCTCAAGCTCGCGCTTATTTTGTTGATAGATGCATTATTCGGATGATATATCTAATGGATGTTTCCTTATTTCAATATCATAGGTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGTGTATGGCTATTTACCTCTAATAATGCCTTATTATGTGCTCTGCCGAAGCTGTTGCTTTCTTTGTCTGCTCATAGCAAATGAAAAAAACTAAATGATACTATACAGGCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTGAATGAATAATCTTTGCCGAGATCCACACTGTCAAGACATTTTGATATGTATATGCATATGCTTTAACTTTATGAAGCCTATGTTTGTTGCCAGGTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAGGTAGCAATTCTTGTCTTTATGGGATACAGTTCTGGATTCACAGTTATGTTGTTTGATTTTATTGCCAATATGAAATTCCTAATTATATATCCCGAGAAGTTTTATCTACATTTTCTACTGTTGCATATAGGCGTAACTCACTCTCTTTTTTGGTGTCCCTTACCAAAGAATTAACCTTTTTTAGATAACAGATGACAGTGCTAAGCTAAAGACTTACAATAGTAAATTATAAGCTCATAAGGCATGTCACTGAGCTTGTTCTCCTTTGCATCTCACAAGATGAACGAGAACAAGTAACCATAGCATTCTTCTTAAACACGTTTCAATGCATTTAAAAGGAGGAAAAACAATATGCAGCAAAAAATGTATTAAAGAAACATGATGTAGACTTCTTCATTTTCTATTTGAAGATTGAAGATTGAAGAATGAACAAGAACTGACAGTCACACGTGTCTCTTCGACATTTTGTATTTTTTGTGGTTAAATAACTTCTCTTTCTGCAAATGTATATCATCTACGAAATTTAATATTTGTATGATGCAGGTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAAGTAAGTTTTGCTAGATGCTCTATTCTTCATTTTTGTGTGTTGATATGATTTGTTACGTCTGTTATTCTGTTTCTTTATAACGTTGTTGGATTGATAAGAATCCAAAGTTCAAATTCTTGTCCTTTGCTTTTGAAAATTGCAGATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGG</genome_strand>
        <mrna_strand>ATTGAGCAGAACAAATCTGTCAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA.....................................................................................GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT.........................................................................................................GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG................................................................................................GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTCGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA..............................................................................................................................................ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717610" ref_strand="+" ref_description="SGN-E717610 [FC02AH09]">
      <seq>gggcgattggcggccaatcggccgaattgagcaaaacaaatctgttcgctatggcggcgtcttcagctatagcttcaagttctacaactttcatcaataagaaagatgtgggtctatctgccttctcttcacaagcttcattttccgttcaaactgctcggaaaaggatatccaagagaattgtttctgtgatgacacctcagcagactgaaagaaaacctgccacaactggatcagtaaagactggtatgactatgactgagaagatattagctaaggcttctgataagcctgatgtgagccctggtgataatgtctgggtgaatgttgatgttctgatgactcatgatgtttgtggccctggctctattggaattttcaagaaagagtttggacagaatgctaaggtctgggatcgtgaaaagcttgtcattatacctgaccattacatattcacaaccgacgaacgagcaaaccgtaacgtggatatcttgagggatttctgcaatgaacaaaatattaagtacttctatgacattaaagatttggggaacttccgtgctaatcctgattacaagggtgtctgccacgttgctcttgcacaagaaggtcactgcagacctggagaggttttgctgggtacagactcccacacatgtactgctggagctttcgggcaattcgccactggaattggcaatactgatgcaggttttgtgttgggtactggcaagattctgctcaaggtgcctccaactttgagatttgtaatggatggtgaaatgcctgattacttgcttgctaaggacttaattttgcaaattattggtgaaatttcagtggctggtgctacttataaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="1" stop="3575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="298" g_stop="373" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="101" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="774" g_stop="908" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="236" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="994" g_stop="1164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="407" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1932" g_stop="2084" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="560" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2190" g_stop="2258" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="629" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2355" g_stop="2471" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="746" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3015" g_stop="3089" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="821" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3232" g_stop="3275" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="865" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E717610" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="298" e_stop="373"/>
          <exon e_start="774" e_stop="908"/>
          <exon e_start="994" e_stop="1164"/>
          <exon e_start="1932" e_stop="2084"/>
          <exon e_start="2190" e_stop="2258"/>
          <exon e_start="2355" e_stop="2471"/>
          <exon e_start="3015" e_stop="3089"/>
          <exon e_start="3232" e_stop="3275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAGGTTTGTGTGTGTTTTATATGATTGAATTAAGATGCCCCTTTGATGCAAAATTAAGTTTTTTTTTCTTCTCATTATGAGTGAATTTACGCTGACCCTTTTGCTGATATGCTCTTATTTGCTGCAAAAATCAAGACTTTTCCCATTATTGAGGAGATTAATGCTAACCCTTTTGCTGATTTTCTCATATTTGCTGCAAATATTAAGATTTCTTCCGTTATGAGTGGATTTGCACTGACCCTTTTGCTGATTTTCTCAAATTTGCTGCAAAAGTCAAGATCTTTTTTCCGTTTTGAAGAAATTTGTGCTGACTCTTTTGCGGATTTTCTCATATTTATTGCAAAATTCAAGTTTTCTTCAGTTTTGAGGAGATCTGTGCTGACCCTTTTGCTGTTTTGTATAGAAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCAGTATGCATTTCCGATTGGTTTTTGTGCTCTTAATTGTAAAAAAAGGGGTTGACTCTTTTATCATGGTTTTTTTGATTGTTGTTAGGTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAGGTATATATGCTGCCAGTGGAATAACTTTCTTAGTGCAAATTGATTGTCTTGCTATTTTGGTTGAGTAAATTTGAATTTGCTTCGAGTACTTGAAAACTGATTCTTAGCTAGTGTTTGGCCATAGATATAGACATATAGTTGAAACTTGAAAAAAAGAGTTTTTGAAGTTTGTTGTTAGATAATTTTTGGAACTTGAAATTGTGTTTGGACATGCATTTTTATTAGTGCAAATTGATTGTCTTGCAATTTTGGCAGTGTAAATTTGATCTTGCTTTGAGTACTTGAAAACAGATTCTCAGCTAGCGTTTGGTCGTGCATGCATTGAACTTTGAAAAAATTGAAGTTTTGTGAGTGAAGGTGAAATTTCACCCTAAAATTGGTCTGGGCTAGTTTTTGGAACATGAAATTCTTCAAAAACTGACTAAATTTCATGGACAAACAATATTGAATCATTTTCTTTTTTTAAAAACAATCTACTCCCAGAATCTATGACCAAATGGGAGCTATTAGTTTGCTACTTTTCTTCATTACCTGGTTGTGTAGTAGCTATATGTACTGATTGAAGTTTCTTTAGTTCTCTGGTGGTCCGGTAATGGTGTTTATTAAATGTGGAAAATATGAACTAAAGACTGTTTCTCAAGCTCACACTTATTTTGTTGATTAGATGCTGAACTAAAGACTGTTTCTCAAGCTCGCGCTTATTTTGTTGATAGATGCATTATTCGGATGATATATCTAATGGATGTTTCCTTATTTCAATATCATAGGTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGTGTATGGCTATTTACCTCTAATAATGCCTTATTATGTGCTCTGCCGAAGCTGTTGCTTTCTTTGTCTGCTCATAGCAAATGAAAAAAACTAAATGATACTATACAGGCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTGAATGAATAATCTTTGCCGAGATCCACACTGTCAAGACATTTTGATATGTATATGCATATGCTTTAACTTTATGAAGCCTATGTTTGTTGCCAGGTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAGGTAGCAATTCTTGTCTTTATGGGATACAGTTCTGGATTCACAGTTATGTTGTTTGATTTTATTGCCAATATGAAATTCCTAATTATATATCCCGAGAAGTTTTATCTACATTTTCTACTGTTGCATATAGGCGTAACTCACTCTCTTTTTTGGTGTCCCTTACCAAAGAATTAACCTTTTTTAGATAACAGATGACAGTGCTAAGCTAAAGACTTACAATAGTAAATTATAAGCTCATAAGGCATGTCACTGAGCTTGTTCTCCTTTGCATCTCACAAGATGAACGAGAACAAGTAACCATAGCATTCTTCTTAAACACGTTTCAATGCATTTAAAAGGAGGAAAAACAATATGCAGCAAAAAATGTATTAAAGAAACATGATGTAGACTTCTTCATTTTCTATTTGAAGATTGAAGATTGAAGAATGAACAAGAACTGACAGTCACACGTGTCTCTTCGACATTTTGTATTTTTTGTGGTTAAATAACTTCTCTTTCTGCAAATGTATATCATCTACGAAATTTAATATTTGTATGATGCAGGTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAAGTAAGTTTTGCTAGATGCTCTATTCTTCATTTTTGTGTGTTGATATGATTTGTTACGTCTGTTATTCTGTTTCTTTATAACGTTGTTGGATTGATAAGAATCCAAAGTTCAAATTCTTGTCCTTTGCTTTTGAAAATTGCAGATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAAT</genome_strand>
        <mrna_strand>ATTGAGCAAAACAAATCTGTTCGCTATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA.....................................................................................GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT.........................................................................................................GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG................................................................................................GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTCGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA..............................................................................................................................................ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726138" ref_strand="+" ref_description="SGN-E726138 [LA10BG04]">
      <seq>ggatggtgaaatgcctgattacttgcttgctaaggacttaattttgcaaattattggtgaaatttcagtggctggtgctacttataaagcaatggagtttgttggcacgacagttgaaagcttgactatggaagaaagaatgacattatgcaacatggttgttgaagctggtggaaaaaatggtgtcatcccagctgataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggacagacagaggacttcatggctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="2741" stop="5519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3041" g_stop="3089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3232" g_stop="3309" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3387" g_stop="3482" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="223" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="273" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="328" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5107" g_stop="5219" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="441" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E726138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3041" e_stop="3089"/>
          <exon e_start="3232" e_stop="3309"/>
          <exon e_start="3387" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAAGTAAGTTTTGCTAGATGCTCTATTCTTCATTTTTGTGTGTTGATATGATTTGTTACGTCTGTTATTCTGTTTCTTTATAACGTTGTTGGATTGATAAGAATCCAAAGTTCAAATTCTTGTCCTTTGCTTTTGAAAATTGCAGATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACTGTAAGTTTTTTTGACATTGTTAGTGGGATTAACGAGGTTGGATCCTCAAGTAATTATGGATCTTATTGTTTTAATAGATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGC</genome_strand>
        <mrna_strand>GGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA..............................................................................................................................................ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACT.............................................................................ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGACAGACAGAGGACTTCATGGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733023" ref_strand="+" ref_description="SGN-E733023 [LB03DA12]">
      <seq>cggttacttataaagcaatggagtttgttggcacgacagttgaaagcttgactatggaagaaagaatgacattatgcaacatggttgttgaagctggtggaaaaaatggtgtcatcccagctgataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="2959" stop="8661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3257" g_stop="3309" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77">
            <donor d_prob="0.310" d_score="0.98"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3387" g_stop="3482" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="149" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="199" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="254" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="386" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="434" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="593" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8130" g_stop="8361" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="825" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E733023" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3257" e_stop="3309"/>
          <exon e_start="3387" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACTGTAAGTTTTTTTGACATTGTTAGTGGGATTAACGAGGTTGGATCCTCAAGTAATTATGGATCTTATTGTTTTAATAGATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTG</genome_strand>
        <mrna_strand>CGGTTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACT.............................................................................ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213666" ref_strand="+" ref_description="SGN-E213666 [cLEC-76-B9]">
      <seq>gacagttgaaagcttgactatggaagaaagaatgacattatgcaacatggttgttgaagctggtggaaaaaatggtgtcatcccagctgataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="2991" stop="6947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3291" g_stop="3309" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3387" g_stop="3482" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="115" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="165" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="220" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="352" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6583" g_stop="6647" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="465" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E213666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3291" e_stop="3309"/>
          <exon e_start="3387" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTGAAAGCTTGACTGTAAGTTTTTTTGACATTGTTAGTGGGATTAACGAGGTTGGATCCTCAAGTAATTATGGATCTTATTGTTTTAATAGATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTT</genome_strand>
        <mrna_strand>GACAGTTGAAAGCTTGACT.............................................................................ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348901" ref_strand="+" ref_description="SGN-E348901 [cTOF-29-I13]">
      <seq>atggttgttgaagctggtggaaaaaatggtgtcatcccagctgataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagttgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacanatgagtgaatcttgagcttttgatgcttatatattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3114" stop="8661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3414" g_stop="3482" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="119" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="174" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="306" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="354" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="513" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8130" g_stop="8361" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="746" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E348901" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3414" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAG-TGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTG</genome_strand>
        <mrna_strand>ATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACANATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347180" ref_strand="+" ref_description="SGN-E347180 [cTOF-25-I2]">
      <seq>ataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaangaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacacttacagatgagtgaatcttgagcttttgatgcttatatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3157" stop="8659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3457" g_stop="3482" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="76" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="131" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="263" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="311" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="470" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8130" g_stop="8359" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="700" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E347180" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3457" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCC</genome_strand>
        <mrna_strand>ATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAANGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTTACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285604" ref_strand="+" ref_description="SGN-E285604 [cLES-5-E2]">
      <seq>ttctgtgccctatgaacctgtttatagggatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3364" stop="8477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3664" g_stop="3705" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="97" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="229" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="277" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="436" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8130" g_stop="8177" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="484" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E285604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3664" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACAC</genome_strand>
        <mrna_strand>TTCTGTGCCCTATGAACCTGTTTATAGGGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379936" ref_strand="+" ref_description="SGN-E379936 [TUS-3-H13]">
      <seq>atagaccaaagttttctaaagatatcagtatatgttcaagtccaagaacaaggttgaacgaagtgggaaattagttgatgagaaaaatttgttctactataagctttgtagaaataatttccacatatcctggagaatgcggtgacacattttgccaaaactagatgcctttcttgccatcattttcttgtactgaaaaataattatttgtccaaagtaaatgaattgaaggaaggactagatgtcctgaaaattgtcaatatcagaaaatattattagagtgcaattattagctattcctttctggttaggcgatagaatcttgttatgaggttcattatgtgactcaataatggaaatctggcccatgatgaacgtctgaatagtttgttcttttagatgaattttttgtacttcagtgcttcctgcttgtaatgaattcttaactgatgaacattgggagattgtttgcttaaaggattgtaattttttccagcaaggtgttttagtggccgtggaacatttgtatttggatagagctaactgcagaagggtctgagattggtttcttttcaagatctttggggatgtagaagtcttttagtaaagcaatagcctcctttcatgatatcgacgttttctatatccacccagattatagggttttatttatttgatgcagctctttcataaggttgtgcacttgtagtcatcttcccatataccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3654" stop="4983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3954" g_stop="4683" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E379936" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3954" e_stop="4683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTT-GGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTT-CCATATAACCTTCTT</genome_strand>
        <mrna_strand>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATGGAAATCTGGCCCATGATGAACGTCTGAATAGTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGACGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCCATAT-ACCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209037" ref_strand="+" ref_description="SGN-E209037 [cLEC-38-N7]">
      <seq>ccagagttttgtaaggatatcagtgtatgttcaagtccaggaacaaggttgaaccaattggcaaattaggtgatgagacaaattgggcctactatccgcttggttgaaataatttccacatatcctggagaatgcggtgacacattttgccaaaactagatgcctttcttgccatcattttcttgtactgaaaaataattatttgtccaaagtaaatgaattgaaggaaggactagatgtcctgaaaattgtcaatatcagaaaatattattagagtgcaattattagctattcctttctggttaggcgatagaatcttgttatgaggttcattatgtgactcaataatggaaatctggcccatgatgaacgtctgaatagtttgttcttttagatgaattttttgtacttcagtgcttcctgcttgtaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3659" stop="4694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3959" g_stop="4394" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E209037" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3959" e_stop="4394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATT</genome_strand>
        <mrna_strand>CCAGAGTTTTGTAAGGATATCAGTGTATGTTCAAGTCCAGGAACAAGGTTGAACCAATTGGCAAATTAGGTGATGAGACAAATTGGGCCTACTATCCGCTTGGTTGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATGGAAATCTGGCCCATGATGAACGTCTGAATAGTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368436" ref_strand="+" ref_description="SGN-E368436 [TUS-23-H13]">
      <seq>aattgccatgtcttcaacattaacacgtcgtttttttgtatacccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgtgtttctctttttttctctttactccaagaaatgaatgctcttctgcaataaaatgagaactccttgattcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4434" stop="8755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4734" g_stop="4835" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="234" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8454" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="766" r_length="325" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="815"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E368436" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4734" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTC-TTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTA</genome_strand>
        <mrna_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGTGTTTCTCTTTTTTTCTCTTTACT-CCAAGAAATGAATGCTCTTCTGCAATAAAATGAGAACTCCTTGATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240139" ref_strand="+" ref_description="SGN-E240139 [cLED-32-H16]">
      <seq>aattgccatgtcttcaacattaacacgtcgtttttttgtatacccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4434" stop="8584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4734" g_stop="4835" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="234" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8284" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="596" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E240139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4734" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGAC</genome_strand>
        <mrna_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241834" ref_strand="+" ref_description="SGN-E241834 [cLED-27-M9]">
      <seq>aattgccatgtcttcaacattaacacgtcgtttttttgtatacccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4434" stop="8530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4734" g_stop="4835" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="234" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8230" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="542" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E241834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4734" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATT</genome_strand>
        <mrna_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243651" ref_strand="+" ref_description="SGN-E243651 [cLED-34-N7]">
      <seq>aattgccatgtcttcaacattaacacgtcgtttttttgtatacccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4434" stop="7042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4734" g_stop="4835" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="234" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E243651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4734" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG</genome_strand>
        <mrna_strand>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379968" ref_strand="+" ref_description="SGN-E379968 [TUS-3-H13](-)">
      <seq>acattaacacgtcgtttttttgtatacccagatatcttaaggagtacagattgnatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaagcccgcgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4450" stop="8676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4750" g_stop="4835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="218" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="266" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="425" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8376" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="672" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E379968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4750" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTC</genome_strand>
        <mrna_strand>ACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTGNATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGCCCGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711463" ref_strand="+" ref_description="SGN-E711463 [FB02AC11]">
      <seq>cccatatatcttaaggagtacagatttgatgtttccaagttgccccccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgtgtttctcttttttctctttactcccaagaaatgaatgctcttctgcaataaaatgagaactccttgattcctaatttctgtcttctttgttgtattcttggagtcttattgttaaaaagcattggaataagaatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4476" stop="8818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4776" g_stop="4835" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="192" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="240" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="399" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8518" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="789" r_length="390" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E711463" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4776" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTT-AAAAGCATTGAAATAAGAATTTGT</genome_strand>
        <mrna_strand>CCCATATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGCCCCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCAATAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAAGCATTGGAATAAGAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204226" ref_strand="+" ref_description="SGN-E204226 [cLEC-13-F19]">
      <seq>gaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgagtttctcttttttctctttactccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4840" stop="8707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5140" g_stop="5238" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="147" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="306" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8130" g_stop="8407" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="584" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E204226" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5140" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCA</genome_strand>
        <mrna_strand>GAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGAGTTTCTCTTTTTTCTCTTTACTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727622" ref_strand="+" ref_description="SGN-E727622 [LA15BA03]">
      <seq>atagatgtctaaatcgatatcagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcataagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccatttccaggatcaggtggcaaaacatgttcccactatttttgaggaggcaggttgcgatacacctgcaagtcctacttgaggtgctagtttgggaggccctatagacacttatgcgcgcatgaatgaagctcaggtctgtgtatcaaccacgaatacgaacttccctggccgaatgggacacaaagaaggccacatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatcccctagagtttttgcagtgaatgtcctcgatgacctcattttaagactttggattatggtgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctctatgtgtttctcttttttctctttactcccaacaaatgaatgctcttctgcaataatatgagaactccttgattcctaggctgcaattattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4866" stop="8754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5146" g_stop="5238" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="142" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="302" r_length="160" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8130" g_stop="8454" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="627" r_length="325" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E727622" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5146" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGTCAAAATCGATA-GAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCA-GATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTA</genome_strand>
        <mrna_strand>ATAGATGTCTAAATCGATATCAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCATAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCATTTCCAGGATCAGGTGGCAAAACATGTTCCCACTATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTACTTGAGGTGCTAGTTTGGGAGGCCCTATAGACACTTATGCGCGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATACGAACTTCCCTGGCCGAATGGGACACAAAGAAGGCCACATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCTAGAGTTTTTGCAGTGAATGTCCTCGATGACCTCATTTTAAGACTTTGGATTATGGTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCTATGTGTTTCTCTTTTTTCTCTTTACTCCCAACAAATGAATGCTCTTCTGCAATAATATGAGAACTCCTTGATTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265611" ref_strand="+" ref_description="SGN-E265611 [cLEI-14-M12]">
      <seq>aaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgtgtttctcttttttctctttactcccaagaaatgaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="4893" stop="8722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5193" g_stop="5238" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="94" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="253" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8130" g_stop="8422" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="546" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E265611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5193" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCT</genome_strand>
        <mrna_strand>AAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309199" ref_strand="+" ref_description="SGN-E309199 [cLEZ-12-A13]">
      <seq>ggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgtgtttctcttttttctctttactcccaagaaatgaatgctcttctgcaataaaatgagaactccttgattcctaatttctgtcttctttgttgtattcttggagtcttattgttaaaagcattgaaataagaatttgtttctggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="7872" stop="8830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8172" g_stop="8536" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E309199" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8172" e_stop="8536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAATAATTACTC</genome_strand>
        <mrna_strand>GGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCAATAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547284" ref_strand="+" ref_description="SGN-E547284 [TUS-71-B10](-)">
      <seq>gttcgtgtccttgtcggaaacctaatccctccgattcgtactcacctccgtactcaccatcatggaatgcgttttgtcgcacttcagattcgtcgtccatcagggcgtcctcaaggtatattgaatattggtgtatctttactcgatagctcgatgaggagtatgccattatatagacaaatgagcacgtcagcagttgcatatcgcgatttgatggaagatcgaaacacacaccatacacacaacaatgagatcaagcagaacaacgatagtaatgttgatgttccaaaacctatattacgtcgaataaagagtgaacgtagcgaacgtatcgcgttggatgatatttccataggtaataatagttcaatagttgcaattccttcaaaaacaaaaggtatagatcatgaaaaagagagttcaataattagtatttcatttgaacctccaattcatatgatgaaaaaaaagggaaaagcaagttctgttataaatggagctgagctaataaatgagaaatcaaaattagaaaataaaaaaattaagacaagttctgttttaagtgattcaattgcaagaagaagaatattgaggaattagggggtctttttgtttaggtctctcttttcattattattttttatttacaatattgtaattactattctatctgattattttttttagttctcaaaactactgtgcattgttatcaatttgtaattggtaatatgtcttttcttggaaaaagagaagttcatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="10766" stop="8594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10466" g_stop="10380" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10379" i_stop="10194" i_length="186">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10193" g_stop="9708" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="573" r_length="486" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9707" i_stop="9092" i_length="616">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9091" g_stop="8894" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="766" r_length="193" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="778"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E547284" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10466" e_stop="10380"/>
          <exon e_start="10193" e_stop="9708"/>
          <exon e_start="9091" e_stop="8894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTGTCCTTGTCGGAAACCTAATCCCTCCGATTCGCACTCACCTCCGTACTCACCATCATGGAATGCGTTTTGTCGCACTTCAGGTTTGTTTCGCTTTTTCATTAAAAAGAAAGAAATAACTTTGCATTTCAAAAATAAAAACTAAAAAGTTAGGCCGTCAATTTATTTTTGGATACATGCATGTCACATGACTCTATATATATCATCATTAATTTTACCTTTATGTTAATTGACATTATTATTTATATAAATGTTACATATGTACGTAGATTCGTCGTCCATCAGGGCGTCCTCAAGGTATATTGAATATTGGTGTATCTTTACTCGATAGCTCGATGAGGAGTATGCCATTATATAGACAAATGAGCACGTCAGCAGTTGCATATCGCGATTTGATGGAAGATCGAAACACACCCCATACACATAACAATGAGATCAAACAGAACAACGATAGTAATGTTGATGTTCCAAAACCTATATTACGTAGAATAAAGAGTGAACGTAGCGAACGTATCGCGTTGGATGATATTTCCATAGGTAATAATAGTTCAATAGTTGCAATTCCTTCAAAAACAAAAGGTGTAGATCATGAGAAAGAGAGTTCAATACTTAGTATTTCATTTGAACCTCCAATTCATATGATGAAAAAAAAGGGAAAAGCAAGTTCTGTTATAAATGGAGCTGAGCTAATAAATGAGAAATCAAAATTAGAAAATAAAAAGATTAAGACAAGTTCTGTTTTAAGTGATTCAATTGTAAGCAAAGGGTCATCAATTTATGATAAGCCCAATCCAAAGCCCAAACTCAAACTTATTGAATTGGAAATGGGGCCCAAATATGAGCCCATAAATGAAAAAGGGCCTTGTTATGACCCACCAACAACTAAAGAAATTGATGAACAGTCTATTACAAAGTCCAGTATGAAGATTTATGGAAATGAGTTTGGAGGCCCAAAAGGCCCATTAACTGAATCAGAAATTGGGCCTTCAGCATCTATAGTGGCTGCTGCTTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTAGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTA-TGTACATTGTTATCAATTTGTAATTGGTAATATGTCTTCTCTTGGAAAAAGAAAAGTTCCATTTAAA</genome_strand>
        <mrna_strand>GTTCGTGTCCTTGTCGGAAACCTAATCCCTCCGATTCGTACTCACCTCCGTACTCACCATCATGGAATGCGTTTTGTCGCACTTCAG..........................................................................................................................................................................................ATTCGTCGTCCATCAGGGCGTCCTCAAGGTATATTGAATATTGGTGTATCTTTACTCGATAGCTCGATGAGGAGTATGCCATTATATAGACAAATGAGCACGTCAGCAGTTGCATATCGCGATTTGATGGAAGATCGAAACACACACCATACACACAACAATGAGATCAAGCAGAACAACGATAGTAATGTTGATGTTCCAAAACCTATATTACGTCGAATAAAGAGTGAACGTAGCGAACGTATCGCGTTGGATGATATTTCCATAGGTAATAATAGTTCAATAGTTGCAATTCCTTCAAAAACAAAAGGTATAGATCATGAAAAAGAGAGTTCAATAATTAGTATTTCATTTGAACCTCCAATTCATATGATGAAAAAAAAGGGAAAAGCAAGTTCTGTTATAAATGGAGCTGAGCTAATAAATGAGAAATCAAAATTAGAAAATAAAAAAATTAAGACAAGTTCTGTTTTAAGTGATTCAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTACTATTCTATCTG-----ATTATTTTTTTTAGTTCTCAAAACTACTGTGCATTGTTATCAATTTGTAATTGGTAATATGTCTTTTCTTGGAAAAAGAGAAGTT-CATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365147" ref_strand="+" ref_description="SGN-E365147 [cLPP-17-B9]">
      <seq>tttagttgaaagaggatatctaatggatgacaagaggagctcagtgttggatggttggagcatcgacgagagcaccgaggggctcaggtcgaagctcgagaggtggaggaacgagatccctccggtacaaaacggagggacaggttcaagtagctatcgttcgaccggacatcaccctagaaggcgttcgagtggagggagtagcttgttttcttgctttggtaatatttgtggctatgaatgtcaatgtatgtgtgggaagcccaaaaagaaaagtgttagtaacaaaaagtatagaagcccatcaactgctagcagatcatggttttgaaagcccaagcccaattagatttgtaaggcccaattgcaagaagaagaatattgaggaattagggggtctttttgtttaggtctctcttttcattattattttttatttacaatattgtaattactattctatctgattattttttttagttctcaaaactatgtgcattgttatcaatttgtaattggtaatatgtcttttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="9753" stop="8606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9453" g_stop="8908" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E365147" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9453" e_stop="8908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGA--T-T-AGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCAATTTGTAATTGGTAATATGTCTTCTCTTGGAAAAAGAA</genome_strand>
        <mrna_strand>TTTAGTTGAAAGAGGATATCTAATGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACGGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACATCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAGAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTTGTAAGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTACTATTCTATCTG-----ATTATTTTTTTTAGTTCTCAAAACTATGTGCATTGTTATCAATTTGTAATTGGTAATATGTCTTTTCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365105" ref_strand="+" ref_description="SGN-E365105 [cLPP-17-A6]">
      <seq>tttagttgaaagaggatatctaatggatgacaagaggagctcagtgttggatggttggagcatcgacgagagcaccgaggggctcaggtcgaagctcgagaggtggaggaacgagatccctccggtacaaaacggagggacaggttcaagtagctatcgttcgaccggacatcaccctagaaggcgttcgagtggagggagtagcttgttttcttgctttggtaatatttgtggctatgaatgtcaatgtatgtgtgggaagcccaaaaagaaaagtgttagtaacaaaaagtatagaagcccatcaactgctagcagatcatggttttgaaagcccaagcccaattagatttgtaaagcccaattgcaagaagaagaatattgaggaattagggggtctttttgtttaggtctctcttttcattattattttttatttacaatattgtaattactattctatctgattatttttttagttctcaaaactatgtgcattgttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="9753" stop="8646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9453" g_stop="8946" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E365105" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9453" e_stop="8946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGA--T-T-AGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCA</genome_strand>
        <mrna_strand>TTTAGTTGAAAGAGGATATCTAATGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACGGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACATCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAGAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTTGTAAAGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTACTATTCTATCTG-----ATTA-TTTTTTTAGTTCTCAAAACTATGTGCATTGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332245" ref_strand="+" ref_description="SGN-E332245 [cTOD-17-C20]">
      <seq>ccaatttcattcggggtctctagcgtattgaccccgaactttttcatcgtcgttcattctctgagagaggacgacgagcaaaacttcctcattaacattgtgaaataatgccaccgatttccaagaacatgggaacgtctttgaaaccgttccagctcttggaaataaacatcatttccgcgcaggacttggaacccatgtcaaagaaattgaagacctacgcggccgcatgggtccatcctacgcggaaacttgccacgggtgttgacgtgaacggtggccataaccccacgtggaatgacaagtttgtttttcgtgtggacgaagaatttctccgtcatgagaattccgccgtccacatcgagatttactccgtccattggttccgtgactctctcgtcggaacggttcgtgtccttgtcggaaacctaatccctccgattcgcactcacctccgtactcaccatcatggaatgcgttttgtcgcacttcagattcgtcgtccatcagggcgtcctcaaggtatattgaatattggtgtatctttactcgatagctcgatgaggagtatgccattatatagacaaatgagcacgtcagcagttgcatatcgcgatttgatggaagatcgaaaccaccccatacacataacaatgagatcaaacagaaacacgatagtaatgttgatgtttcaaaacctatattacgtagaataaagagtgaacgtagcgaacgtatcgcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="11173" stop="9642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10873" g_stop="10380" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10379" i_stop="10194" i_length="186">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10193" g_stop="9942" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="745" r_length="251" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E332245" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10873" e_stop="10380"/>
          <exon e_start="10193" e_stop="9942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCATTCGGGGTCTCTAGCGTATTGACCCCGAACTTTTTCATCGTCGTCCATTCTCTGAGAGAGGACGACGAGCAAAACTTCCTCATTAACATTGTGAAATAATGCCACCGATTTCCAAGAACATGGGAACGTCTTTGAAACCGTTCCAGCTCTTGGAAATAAACATCATTTCCGCGCAGGACTTGGAACCCATGTCAAAGAAATTGAAGACCTATGCGGCCGCATGGGTCCATCCTACGCGGAAACTTGCCACGGGTGTTGACGTGAACGGTGGCCATAACCCCACGTGGAATGACAAGTTTGTTTTTCGTGTGGACGAAGAATTTCTCCGTCATGAGAATTCCGCCGTCCACATCGAGATTTACTCCGTCCATTGGTTCCGTGACTCTCTCGTCGGAACGGTTCGTGTCCTTGTCGGAAACCTAATCCCTCCGATTCGCACTCACCTCCGTACTCACCATCATGGAATGCGTTTTGTCGCACTTCAGGTTTGTTTCGCTTTTTCATTAAAAAGAAAGAAATAACTTTGCATTTCAAAAATAAAAACTAAAAAGTTAGGCCGTCAATTTATTTTTGGATACATGCATGTCACATGACTCTATATATATCATCATTAATTTTACCTTTATGTTAATTGACATTATTATTTATATAAATGTTACATATGTACGTAGATTCGTCGTCCATCAGGGCGTCCTCAAGGTATATTGAATATTGGTGTATCTTTACTCGATAGCTCGATGAGGAGTATGCCATTATATAGACAAATGAGCACGTCAGCAGTTGCATATCGCGATTTGATGGAAGATCGAAACACACCCCATACACATAACAATGAGATCAAACAGAACAACGATAGTAATGTTGATGTTCCAAAACCTATATTACGTAGAATAAAGAGTGAACGTAGCGAACGTATCGCGTTG</genome_strand>
        <mrna_strand>CCAATTTCATTCGGGGTCTCTAGCGTATTGACCCCGAACTTTTTCATCGTCGTTCATTCTCTGAGAGAGGACGACGAGCAAAACTTCCTCATTAACATTGTGAAATAATGCCACCGATTTCCAAGAACATGGGAACGTCTTTGAAACCGTTCCAGCTCTTGGAAATAAACATCATTTCCGCGCAGGACTTGGAACCCATGTCAAAGAAATTGAAGACCTACGCGGCCGCATGGGTCCATCCTACGCGGAAACTTGCCACGGGTGTTGACGTGAACGGTGGCCATAACCCCACGTGGAATGACAAGTTTGTTTTTCGTGTGGACGAAGAATTTCTCCGTCATGAGAATTCCGCCGTCCACATCGAGATTTACTCCGTCCATTGGTTCCGTGACTCTCTCGTCGGAACGGTTCGTGTCCTTGTCGGAAACCTAATCCCTCCGATTCGCACTCACCTCCGTACTCACCATCATGGAATGCGTTTTGTCGCACTTCAG..........................................................................................................................................................................................ATTCGTCGTCCATCAGGGCGTCCTCAAGGTATATTGAATATTGGTGTATCTTTACTCGATAGCTCGATGAGGAGTATGCCATTATATAGACAAATGAGCACGTCAGCAGTTGCATATCGCGATTTGATGGAAGATCGAAAC-CACCCCATACACATAACAATGAGATCAAACAGAAACACGATAGTAATGTTGATGTTTCAAAACCTATATTACGTAGAATAAAGAGTGAACGTAGCGAACGTATCGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547175" ref_strand="+" ref_description="SGN-E547175 [TUS-70-O18]">
      <seq>ctataagagtatgattcaagaaaatccaaataatcccttagttttaagaaactatgctcagttccttgatcagtgtaaaggggacttgagaggagctgaagaatactactcgcgcgcggtattgacagatgctagtgatggagaaattatttcacaatatgcaaattttatatggcatcttcatcatgaccaaaataaagcctcttcttatttcaaaagagcagttcaagcttctccaggaaactgcgatgtactagcatcatatgctaggtttttatgggaaacagaggaagacgaagatgaagatgaagataaagacgaagagtcaaataatcacaaatatcaatttcaatattttcatggagtaatggttactccaaatgcttaatcccccaataccaagtaaaatgagtggtcagaggggattacatggtgggaaatcgaattctcactaataaggtgaaagttcaaatagttaatcagctgaactaataagatttcctgtttccatatagataaataatagttccaataggatttttttccttccaaaaaccgttgtcatatatagagataatctatagctacggtttttttggtacaatttcaacgattgaattgctaaagtgtattagcaatacttaaatagttggaatatagtgttcatagcaacggttgtatagccatagcaaaaaaataccgttgtcataggtctagtttctagtagtgtcatttcgaaataacttcagacatgacgtttgatattaagctgttgataaaactgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="14434" stop="16477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14734" g_stop="14806" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14807" i_stop="14996" i_length="190">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14997" g_stop="15169" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="246" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15641" g_stop="16178" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="789" r_length="543" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E547175" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14734" e_stop="14806"/>
          <exon e_start="14997" e_stop="15169"/>
          <exon e_start="15641" e_stop="16178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAGAGTGTGATTCAAGAAAATCCAAATAACCCCTTAGTTTTAAGAAAGTATGCTCAGTTCCTTGATCAGGTAATGTCCCTTATTTGTCATCTAAGCTACCGCGTATAAGCAGTAGCATAGCAACATATAGTGAAAGGTAGTCAATTGAACACTCTTGACTTCTTTTGCATAAATACACTCAACCTTTCCCAAAACTCCACTTGTCAGATCACGTTGGATATGTTGTTATCATTAGCGTGCTTATCATTTTTTCGTGCAGTGTAAAGGGGACTTGGGAGGAGCTAAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTCATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTGGTAAGTGTTACTCTCTTCTGTCTCATTTTATGTGAAAGTGTTTGATAAGGCACGAACTTTAAGAAAGAAAGAAACTTATAGTCTAACACAAGCTATAAACATTTAATCGACTATAAATCATCTCATTAACAGAGAAAAAAGGAATGTTTATAATGATAACACCACATGATGGTTAAGAAATAAGGATTTATATATATGTACGTCAGTAAACGTTTCCTTCTTCATTGTCGTTTTTTCTCCTTTCATACCTACTTTGATTTGCTATACTCGAGCACAGGGTTTTCCAGAAACAACCTCTCTAACTCCACGAGATAAAGTAAAATCTGTGTACACACTATCCTCCCAAACTCCACTTGTGGGATTTCACTGGAACTATTGTTGTAGTAAAGGACTTTTGCATTGACACCATATTTTGACTTGTTTCTTACCATATTAGTACTACCATATTCATTACATTTATTTTGTTTTCAGCGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACTATTAAGATTTTCCGTTTCCATATAGATAAATAATAGTTCCAATAGTATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTATGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTA-TAGCTATACTTAAATCGTTGGAATATAGTGTTCATAGCAAC-G--GT-TAGCCGTAGCAAAAAAATACCATTGTCATAGGTCTAATTTCTAGTAGTGTCATTTTAAAATAACTTCAGACATGACGTTTAATATTAAGCTGTTGATAAAACTGTCTGC</genome_strand>
        <mrna_strand>CTATAAGAGTATGATTCAAGAAAATCCAAATAATCCCTTAGTTTTAAGAAACTATGCTCAGTTCCTTGATCAG..............................................................................................................................................................................................TGTAAAGGGGACTTGAGAGGAGCTGAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTTATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGACGAAGAGTCAAATAATCACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGGATTACATGGTGGGAAATCGAATTCTCACTAATAAGGTGAAAGTTCAAATAGTTAATCAGCTGAACTAATAAGATTTCCTGTTTCCATATAGATAAATAATAGTTCCAATAGGATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTACGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTATTAGCAATACTTAAATAGTTGGAATATAGTGTTCATAGCAACGGTTGTATAGCCATAGCAAAAAAATACCGTTGTCATAGGTCTAGTTTCTAGTAGTGTCATTTCGAAATAACTTCAGACATGACGTTTGATATTAAGCTGTTGATAAAACTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360308" ref_strand="+" ref_description="SGN-E360308 [cLPP-8-I23]">
      <seq>tataagagtatgattcaagaaaatccaaataatcccttagttttaagaaactatgctcagttccttgatcagtgtaaaggggacttgagaggagctgaagaatactactcgcgcgcggtattgacagatgctagtgatggagaaattatttcacaatatgcaaattttatatggcatcttcatcatgaccaaaataaagcctcttcttatttcaaaagagcagttcaagcttctccaggaaactgcgatgtactagcatcatatgctaggtttttatgggaaacagaggaagacgaagatgaagatgaagataaagacgaagagtcaaataatcacaaatatcaatttcaatattttcatggagtaatggttactccaaatgcttaatcccccaataccaagtaaaatgagtggtcagaggggattacatggtgggaaatcgaattctcactaataaggtgaaagttcaaatagttaatcagctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="14435" stop="16184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14735" g_stop="14806" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14807" i_stop="14996" i_length="190">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14997" g_stop="15169" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="245" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15641" g_stop="15884" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="489" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E360308" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14735" e_stop="14806"/>
          <exon e_start="14997" e_stop="15169"/>
          <exon e_start="15641" e_stop="15884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAGTGTGATTCAAGAAAATCCAAATAACCCCTTAGTTTTAAGAAAGTATGCTCAGTTCCTTGATCAGGTAATGTCCCTTATTTGTCATCTAAGCTACCGCGTATAAGCAGTAGCATAGCAACATATAGTGAAAGGTAGTCAATTGAACACTCTTGACTTCTTTTGCATAAATACACTCAACCTTTCCCAAAACTCCACTTGTCAGATCACGTTGGATATGTTGTTATCATTAGCGTGCTTATCATTTTTTCGTGCAGTGTAAAGGGGACTTGGGAGGAGCTAAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTCATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTGGTAAGTGTTACTCTCTTCTGTCTCATTTTATGTGAAAGTGTTTGATAAGGCACGAACTTTAAGAAAGAAAGAAACTTATAGTCTAACACAAGCTATAAACATTTAATCGACTATAAATCATCTCATTAACAGAGAAAAAAGGAATGTTTATAATGATAACACCACATGATGGTTAAGAAATAAGGATTTATATATATGTACGTCAGTAAACGTTTCCTTCTTCATTGTCGTTTTTTCTCCTTTCATACCTACTTTGATTTGCTATACTCGAGCACAGGGTTTTCCAGAAACAACCTCTCTAACTCCACGAGATAAAGTAAAATCTGTGTACACACTATCCTCCCAAACTCCACTTGTGGGATTTCACTGGAACTATTGTTGTAGTAAAGGACTTTTGCATTGACACCATATTTTGACTTGTTTCTTACCATATTAGTACTACCATATTCATTACATTTATTTTGTTTTCAGCGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACT</genome_strand>
        <mrna_strand>TATAAGAGTATGATTCAAGAAAATCCAAATAATCCCTTAGTTTTAAGAAACTATGCTCAGTTCCTTGATCAG..............................................................................................................................................................................................TGTAAAGGGGACTTGAGAGGAGCTGAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTTATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGACGAAGAGTCAAATAATCACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGGATTACATGGTGGGAAATCGAATTCTCACTAATAAGGTGAAAGTTCAAATAGTTAATCAGCTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547174" ref_strand="+" ref_description="SGN-E547174 [TUS-70-O18](-)">
      <seq>gagcagttcaagcttctccaggaaactgcgatgtactagcatcatatgctaggtttttatgggaaacagaggaagacgaagatgaagatgaagataaagacgaagagtcaaataatcacaaatatcaatttcaatattttcatggagtaatggttactccaaatgcttaatcccccaataccaagtaaaatgagtggtcagaggggattacatggtgggaaatcgaattctcactaataaggtgaaagttcaaatagttaatcagctgaactaataagatttcctgtttccatatagataaataatagttccaataggatttttttccttccaaaaaccgttgtcatatatagagataatctatagctacggtttttttggtacaatttcaacgattgaattgctaaagtgtattagcaatacttaaatagttggaatatagtgttcatagcaacggttgtatagccatagcaaaaaaataccgttgtcataggtctagtttctagtagtgtcatttcgaaataacttcagacatgacgtttgatattaagctgttgataaaactgtctgaattacgtaagtctgaattgatcagactaaaatgactaaggtttaataaaaaaaatgttgattcacgatgtaaattttgatgttgctaacaagcaaatttgaattataattttatgagggaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="14842" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15142" g_stop="15169" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15641" g_stop="16299" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="691" r_length="663" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16300" i_stop="16915" i_length="616">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16916" g_stop="16942" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="718" r_length="27" r_score="0.741"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E547174" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15142" e_stop="15169"/>
          <exon e_start="15641" e_stop="16299"/>
          <exon e_start="16916" e_stop="16942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGTTCAAGCTTCTCCAGGAAACTGGTAAGTGTTACTCTCTTCTGTCTCATTTTATGTGAAAGTGTTTGATAAGGCACGAACTTTAAGAAAGAAAGAAACTTATAGTCTAACACAAGCTATAAACATTTAATCGACTATAAATCATCTCATTAACAGAGAAAAAAGGAATGTTTATAATGATAACACCACATGATGGTTAAGAAATAAGGATTTATATATATGTACGTCAGTAAACGTTTCCTTCTTCATTGTCGTTTTTTCTCCTTTCATACCTACTTTGATTTGCTATACTCGAGCACAGGGTTTTCCAGAAACAACCTCTCTAACTCCACGAGATAAAGTAAAATCTGTGTACACACTATCCTCCCAAACTCCACTTGTGGGATTTCACTGGAACTATTGTTGTAGTAAAGGACTTTTGCATTGACACCATATTTTGACTTGTTTCTTACCATATTAGTACTACCATATTCATTACATTTATTTTGTTTTCAGCGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACTATTAAGATTTTCCGTTTCCATATAGATAAATAATAGTTCCAATAGTATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTATGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTA-TAGCTATACTTAAATCGTTGGAATATAGTGTTCATAGCAAC-G--GT-TAGCCGTAGCAAAAAAATACCATTGTCATAGGTCTAATTTCTAGTAGTGTCATTTTAAAATAACTTCAGACATGACGTTTAATATTAAGCTGTTGATAAAACTGTCTGCTGAGTTATGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTT-A-AGAAAAAATGTTGATTCACAATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGTGATGATTTTGTGTTTATTATTGTTAAAGAGATTGTAGGAAATTTTTCGTACACTTAAATTTATTTTTCGCATAAAATTTATTGTCTAAATTGTAATTTGAAAAAAAATTAACATTTTTTAATTAATATTTTCATAGAAGATGTGACCGAAAAACATGATAAATAATTAAGATAAATAAGGTATTAGTATTTAAGAAAAAAACTTTTTGATAAAAAAAATTTAGCTAGAATTTGATCAAAATGATATTTTATTTATATTATTTTATTTTTTTAATATATATTTTTAATATTTTTAACTTAAATACATTTTAATAAAAAAATATTTAATTAAGGGTTACCTCATATTCATAATTGAATTTATTGGAATTTGGGTGCTGCCCAAGTTAAAAAAACAACTTCTTTATATGTAAAATTTATTATTCACTCCATTCACTTTTAAGGAAAAATAATTACTGTTTTTTTCTTAATTTACCTTCTATATTAAATACTTAATTTCAAATTATTTTTTTATATTTAAAAATATATATCAATTAATAAATGAATTATAGTTAAATAATAATATTAACCATTATATTTTAAGAGACATGCTCAAAATAAACATATAATAAAACCTTTCTTAAAAGACATATATAAAAAAAAATGAAT</genome_strand>
        <mrna_strand>GAGCAGTTCAAGCTTCTCCAGGAAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGACGAAGAGTCAAATAATCACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGGATTACATGGTGGGAAATCGAATTCTCACTAATAAGGTGAAAGTTCAAATAGTTAATCAGCTGAACTAATAAGATTTCCTGTTTCCATATAGATAAATAATAGTTCCAATAGGATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTACGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTATTAGCAATACTTAAATAGTTGGAATATAGTGTTCATAGCAACGGTTGTATAGCCATAGCAAAAAAATACCGTTGTCATAGGTCTAGTTTCTAGTAGTGTCATTTCGAAATAACTTCAGACATGACGTTTGATATTAAGCTGTTGATAAAACTG--T-CTGAATTACGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTTAATAAAAAAAATGTTGATTCACGATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348227" ref_strand="+" ref_description="SGN-E348227 [cTOF-27-M19]">
      <seq>cccaaatacagccaaaaccctacaaattttctctgcttcttcttcttcttcctcaacaatggcgcctatgagtggaaagccctttgctttgaccggatcaagcagcaagaatgacggcgttttagctaggatttctcaatccaccattgttacgaaggggaaacaagcagcttgtgatgcgacttatgtggggaaaaagcttgcgaagagtactggaaaagctgcttggcttgttgctacaacgtttttggttctgggtttgccgttgattattgttatggatcgtgaacagcagctgaatgatcttgatcttcaacaagcaagtcttcttggtgcttcccctgctactacacagaattgattttgttagtgggtttgagaaatttgtagaatgggttgggaaagctgcagtttattagttaaaaaaagaagatcttgatcttcaatagaaattatttttcgttatgtttgtgtttttttgttagtgttttgatgatggatttcgagattggatcgatgaaatttgtagaatgtgttggttgttttattagatgtttgggaagctgcagtgtttattagtggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="16906" stop="18096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17206" g_stop="17802" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E348227" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17206" e_stop="17802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATACAGCCAAAACCCTACAAATTTTCTCTGCTTCTTCTTCTTCTTCTTCCTCAACAATGGCGCCTATGAGTGGAAAGCCCTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAATTTGAT</genome_strand>
        <mrna_strand>CCCAAATACAGCCAAAACCCTACAAATTTTCTCTG---CTTCTTCTTCTTCTTCCTCAACAATGGCGCCTATGAGTGGAAAGCCCTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346725" ref_strand="+" ref_description="SGN-E346725 [cTOF-28-B6]">
      <seq>ctacaaattttctctgcttcttcttcttcttcctcacaatggcgcctatgagtggaaagccctttgctttgaccggatcaagcagcaagaatgacggcgttttagctaggatttctcaatccaccattgttacgaaggggaaacaagcagcttgtgatgcgacttatgtggggaaaaagcttgcgaagagtactggaaaagctgcttggcttgttgctacaacgtttttggttctgggtttgccgttgattattgttatggatcgtgaacagcagctgaatgatcttgatcttcaacaagcaagtcttcttggtgcttcccctgctactacacagaattgattttgttagtgggtttgagaaatttgtagaatgggttgggaaagctgcagtttattagttaaaaaaagaagatcttgatcttcaatagaaattatttttcgttatgtttgtgtttttttgttagtgttttgatgatggatttcgagattggatcgatgaaatttgtagaatgtgttgggttgttttattagatgtttgggaagctgcagtgtttattagtggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="16925" stop="18096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17225" g_stop="17801" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E346725" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17225" e_stop="17801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAATTTTCTCTGCTTCTTCTTCTTCTTCTTCCTCAACAATGGCGCCTATGAGTGGAAAGCCCTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTT-GGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAATTTGA</genome_strand>
        <mrna_strand>CTACAAATTTTCTCTGC---TTCTTCTTCTTCTTCCTC-ACAATGGCGCCTATGAGTGGAAAGCCCTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351778" ref_strand="+" ref_description="SGN-E351778 [cTOS-8-L6]">
      <seq>ctttgctttgaccggatcaagcagcaagaatgacggcgttttagctaggatttctcaatccaccattgttacgaaggggaaacaagcagcttgtgatgcgacttatgtggggaaaaagcttgcgaagagtactggaaaagctgcttggcttgttgctacaacgtttttggttctgggtttgccgttgattattgttatggatcgtgaacagcagctgaatgatcttgatcttcaacaagcaagtcttcttggtgcttcccctgctactacacagaattgattttgttagtgggtttgagaaatttgtagaatgggttgggaaagctgcagtttattagttaaaaaaagaagatcttgatcttcaatagaaattatttttcgttatgtttgtgtttttttgttagtgttttgatgatggatttcgagattggatcgatgaaatttgtagaatgtgttggttgttttattagatgtttgggaagctgcagtgtttattagtggaaaaatttgatcttgatctttcatggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="16990" stop="18119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17290" g_stop="17826" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E351778" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17290" e_stop="17826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAATTTGATCTTGATCTTCAATGGAATTGATTT</genome_strand>
        <mrna_strand>CTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGG-AAAAATTTGATCTTGATCTTTCATGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326815" ref_strand="+" ref_description="SGN-E326815 [cTOC-25-C9]">
      <seq>ttcattcacattttcacatttcaaaaactcaagcttgaaatctttataaaaaaaataaataaatacaaaacaacaatggaataatccatcaagaatccacaaaatgagtatggcatcaaagccattttgcatattctctcttttcttagttatatttaccatattcaagctaaccccacaagctaaatctgattctgattatactaagttgatttacaagggttgtgcaaagcaagatttatcagatccatctggggtttactcacaagctctttcttccctttttggcactcttgtttcacagtcctcaaagtctaagttctataagactagtactggtagtgggcaatctacaatttctggtctttttcagtgtagaggtgacctttctaatgttgattgttataaatgtgttagtggtttgccaatactcatagataagttatgtggaagtaagcctgttgctgcaagaatccagctttatggctgttacatgctctatgaggttgctggtttccctcaaatctctggaatggagatgctgttcaagacttgtagtgggaaaaatgctccaggtagtgggtttgaggaaagaagagatactgcttttttcacattggaaaatggcatggctagtagcaatggcttctacacgacaagctatcagtctgtttataccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="25484" stop="23170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25184" g_stop="24610" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24609" i_stop="23576" i_length="1034">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23575" g_stop="23470" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="681" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E326815" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25184" e_stop="24610"/>
          <exon e_start="23575" e_stop="23470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAGGTAGCTTAGGAGGATTCAAGATTTAAACTTTACTAGTTCTATTTCAAATATTTTGAATTTTTAGTGTTTCTTGCATATATAGTTACACTCTGTGTTGATAGGTTCACTCTTTAGAACTGGTAGTGGGAAGTCCACGGTATCTGGTCTTTTTCAGTGTAGAGGTGACCTGTGCTTTAAATGTCAGTGGCTTGCCAATACTCATTGATAAGCTGTGTGGTAGCAAGCCCTGTTGCTTCAAGAATCCAGCTTTTTGGCTGTTACATGCTCATCTCTGGAATGGAGATGCAGTATAAGACTTGTACTGGGGAAAATGCTCCTGGTAGCATAGGCGGATTCAAGATTTAAACTTTACTAGTTCAATTTTAACTTTTTTGATGTTGTTTGAATTTTTAGTGTTTCTTTGCATATATAGTTTTACTCTGTGTCAAAGACGGATTCAGAATTTGGAGTTTATAGATCCGCTCTTCAGTACTGGTAGTGGGCAGTCCATAATTCATGGTCTTTTCAGTGTGGAGATGACCACTCTAGTGTTGACTGCTCTAAATGTGTTAGTGGTTTGCCAATACTCATTGATAAGCTACATGGTAGCAATCCTATTGTTGCAAGAATCCAGCTTTATGGCTTTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTACAAGACTTATAGTGGGTAAAATGCTTCAGGCAGCATAGACAGATTCAAGAATTAAATTTTACGTGTTCAAATTGTTAGGTTTTAACCGCTCAACCGGTTGCGCATTTCAAATGTGGGTTACAAATTTAGTATTTCTTGAATTTCTAGTGATTTTGTTACGTATATTTATGTTCTGTCTCGAAAATTTTGGTTTTGGTCTTACATGTTACTTATAGCTACATACAGAATTTAAGTTTTATATGTTCAATTTTTAGTATATACCACCATAGCCATTACATTTTTCAAAATTACACGTTCAAGACTTGTATTTCTTTCATATATATATTTAGAACCCGTGTCGAAAATATTATCAGGTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTCCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</genome_strand>
        <mrna_strand>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTTCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350894" ref_strand="+" ref_description="SGN-E350894 [cTOS-7-B13]">
      <seq>tgctaacggtggatctgctgctggccagtctccaactggagccacaggatatggaaatcaaggttatggctatggtggatatggcggaaatgatgggtcttatggaggtggtgcatcgggagatatgcaatcaggtggaggttacatgggcagtggctatggcgatgctagtggaaattcacaaggttctggtaattatggtgctcagcaaaatggaccttatggtggtggtgccccaagtcggcaggctcaacaacactgatcatagtggtcaatttcatccgagaagtcacctagtaacgtagcagaggatttcacgcaactgatttcgttccacagacagtttcctcttgctgttcttgcaagcgtaaagcgcttaatgggattgctttaatttttgtagtttgcagttcttatttctagtttacaacaagtaattgtcagtcttatttccctgttttgtcatattttatgttttactgtagttttaatttggcttgcttatggttgaggttcgtttaatagttagttttacccttggtgatactatctcatcgccattactaaacttccttagttggatggaaaactccaaatangataatgaaagtggaaaatacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="32187" stop="33411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32487" g_stop="33111" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E350894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32487" e_stop="33111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATAGGATAATGAAAGTGGAAAATACAACTC</genome_strand>
        <mrna_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATANGATAATGAAAGTGGAAAATACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349988" ref_strand="+" ref_description="SGN-E349988 [cTOS-4-K3]">
      <seq>tgctaacggtggatctgctgctggccagtctccaactggagccacaggatatggaaatcaaggttatggctatggtggatatggcggaaatgatgggtcttatggaggtggtgcatcgggagatatgcaatcaggtggaggttacatgggcagtggctatggcgatgctagtggaaattcacaaggttctggtaattatggtgctcagcaaaatggaccttatggtggtggtgccccaagtcggcaggctcaacaacactgatcatagtggtcaatttcatccgagaagtcacctagtaacgtagcagaggatttcacgcaactgatttcgttccacagacagtttcctcttgctgttcttgcaagcgtaaagcgcttaatgggattgctttaatttttgtagtttgcagttcttatttctagtttacaacaagtaattgtcagtcttatttccctgttttgtcatattttatgttttactgtagnttttattttggcttgcttatggttgaggttcgtttaatagnntagttttaccttggtgatactatctcatcgccattactaaacttccttagttggatggaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="32187" stop="33378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32487" g_stop="33078" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E349988" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32487" e_stop="33078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAG-TTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAG-TTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTC</genome_strand>
        <mrna_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGNTTTTATTTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGNNTAGTTTTA-CCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGG-AAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352131" ref_strand="+" ref_description="SGN-E352131 [cTOS-13-E11]">
      <seq>ggctatggtggatatggcggaaatgatgggtcttatggaggtggtgcatcgggagatatgcaatcaggtggaggttacatgggcagtggctatggcgatgctagtggaaattcacaaggttctggtaattatggtgctcagcaaaatggaccttatggtggtggtgccccaagtcggcaggctcaacaacactgatcatagtggtcaatttcatccgagaagtcacctagtaacgtagcagaggatttcacgcaactgatttcgttccacagacagtttcctcttgctgttcttgcaagcgtaaagcgcttaatgggattgctttaatttttgtagtttgcagttcttatttctagtttacaacaagtaattgtcagtcttatttccctgttttgtcatattttatgttttactgtagttttaatttggcttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="32254" stop="33290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32554" g_stop="32989" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="446"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E352131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32554" e_stop="32989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTT</genome_strand>
        <mrna_strand>GGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379026" ref_strand="+" ref_description="SGN-E379026 [TUS-1-G23](-)">
      <seq>gactcaatagcttgacacaacttgaaaccttggtgaacttcaacacgagcttgtgcagagctaatgatgtctcaacactttgtaaactccattacctggaggcaaaggtgnaaaataatttccccgactttgaatcaatcaccagttacctgacttcaaacaaatgtccgctacattgctccattgacatcatagatttgaattgctctgcacccgaacgtagtactgtactagaagaattcttaggttgtgaagtactccaaaccttgaaattcaaaggatttattggacccctattaccatctcctaaaatctccccgaatctcactcagttacgtcttcataagtcttgtcttaaacaagaccccatgccaatcttggagaagcttcctagtttagggattctaggcctcaatgatgatgcctatatggggaaggatatggtctgttcagcttcaggtttccctcagctcaaatgcttacaactcctcaatttgtccgagctgcagagaatccatgtggaaaatacagccatgcctatactttccaacatagaaatcgacaactgccagaaacttgatatcaacagcattcaacagttccacgcagtattgcttgaaaaaaaacaaacaagaatctgatacctcaaactacttttatctaggaatattgtaacttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="34928" stop="33665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34628" g_stop="33948" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E379026" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34628" e_stop="33948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAATAGCTTGACACAACTTGAAACCTTGGTGAACTTCAACACGAGCTTGTGCAGAGCTAATGATGTCTCAACACTTTGTAAACTCCATTACCTGGAGGCAAAGGTTGAAAATAATTTCCCCGACTTTGAATCAATCACCAGTTACCTGACTTCAAACAAATGTCCACTACATTGCTCCATTGACATCATAGATTTGAATTGCTCTGCACCCGAACGTAGTACTGTACTAGAAGAATTCTTAGGTTGTGAAGTACTCCAAACCTTGAAATTCAAAGGATTTATTGGACCCCTATTACCATCTCCTAAAATCTCCCCGAATCTCACTCAGTTACGTCTTCATAAGTCTTGTCTTAAACAAGACCCCATGCCAATCTTGGAGAAGCTTCCTAGTTTAGGGATTCTAGGCCTCAATGATGATGCCTATATGGGGAAGGATATGGTCTGTTCAGCTTCAGGTTTCCCTCAGCTCAAATGCTTACAACTCCTCAATTTGTCCGAGCTGCAGAGAATCCATGTGGAAAATACAGCCATGCCTATACTTTCCAACATAGAAATCGACAACTGCCAGAAACTTGATATCAACAGCATTCAACAGTTCCACGCAGTATTGCTTGAAAAAAAACAAACAAGAATCTGATACCTCAAACAATTTTTATCTAGTCCTATTGTAACTTGTT</genome_strand>
        <mrna_strand>GACTCAATAGCTTGACACAACTTGAAACCTTGGTGAACTTCAACACGAGCTTGTGCAGAGCTAATGATGTCTCAACACTTTGTAAACTCCATTACCTGGAGGCAAAGGTGNAAAATAATTTCCCCGACTTTGAATCAATCACCAGTTACCTGACTTCAAACAAATGTCCGCTACATTGCTCCATTGACATCATAGATTTGAATTGCTCTGCACCCGAACGTAGTACTGTACTAGAAGAATTCTTAGGTTGTGAAGTACTCCAAACCTTGAAATTCAAAGGATTTATTGGACCCCTATTACCATCTCCTAAAATCTCCCCGAATCTCACTCAGTTACGTCTTCATAAGTCTTGTCTTAAACAAGACCCCATGCCAATCTTGGAGAAGCTTCCTAGTTTAGGGATTCTAGGCCTCAATGATGATGCCTATATGGGGAAGGATATGGTCTGTTCAGCTTCAGGTTTCCCTCAGCTCAAATGCTTACAACTCCTCAATTTGTCCGAGCTGCAGAGAATCCATGTGGAAAATACAGCCATGCCTATACTTTCCAACATAGAAATCGACAACTGCCAGAAACTTGATATCAACAGCATTCAACAGTTCCACGCAGTATTGCTTGAAAAAAAACAAACAAGAATCTGATACCTCAAACTACTTTTATCTAGGAATATTGTAACTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379464" ref_strand="+" ref_description="SGN-E379464 [TUS-1-G23]">
      <seq>ttgtaactacccgagttgaatatgtagcgaaatacatatcaaaaaaacacagtcagcctgtatataacatgaagtccttgaacgagggtgatagttggagattgttcgacatggtgttatctcacagtcacagggcatcatcatcagatagggaaatggttagatgttgttatgggttaccagggctcatcaagcaccttgcatcgtataaaacaagtgatcaatcatttatctctgaatactattgtctactttataaacaagagttaccaaaggaattgcaaccatgctttatttacttaggtcatttcctagaaaatcaattgatagatccagaaaagttgtcccatttatggatgatcgaagggttattatcaacaagacaaagtgttgttaaagggcatcagagcatgactgagagatatctgaaagaactagaacgtatgggcgtggtagagctgcaaccagaggaagttccaacgaccaacaaattattcaaggcttatcgctttgttncaggtatggaaaaattttgcgtctcaaattgtgaagaaaaatgttttctcaaaatcattgatttaagacgagaaaactgttcactctcatcgagtgacagaccacgtcgacttgtgatatatctaggtaatcgcacagttgagattcctcctaaagttttctaaactattcttagtcttagagtgggtcttcttggaaatcagcacacccctactgaaatgctaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="36090" stop="34623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35790" g_stop="35644" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35643" i_stop="35520" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="34923" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="744" r_length="597" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E379464" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35790" e_stop="35644"/>
          <exon e_start="35519" e_stop="34923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTACATAACATGAATTCCTTGAACGAGGATGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAGGTCAGTTAATTTAATTCTACTCTGCTTTTGTTTTAAAAGTGCCACTAAGTGATACTTATTTGAAAAATAATAATAGTAGATCCTCTCATATGATATGTCTAATACAGTATCTAACTCTGTGCAGATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCATCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTCAAGGTATGGAAAAATTTTGTGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTCTAAAACTATTCTTAGTCTTAGAGTGGTTCTTCTTGGAAACCAGCACACCCCTACTGAAATGCTAAACC</genome_strand>
        <mrna_strand>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTATATAACATGAAGTCCTTGAACGAGGGTGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAG............................................................................................................................ATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCACCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTNCAGGTATGGAAAAATTTTGCGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTTCTAAACTATTCTTAGTCTTAGAGTGGGTCTTCTTGGAAATCAGCACACCCCTACTGAAATGCTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201323" ref_strand="+" ref_description="SGN-E201323 [cLEC-4-O7]">
      <seq>ttgtaactacccgagttgaatatgtatcgaaatacatatcaaaaaaacacagtcagcctgtatataacatgaagtccttgaacgagggtgatagttggagattgttcgacatggtgttatctcacagtcacagggcatcatcatcagatagggaaatggttagatgttgttatgggttaccagggctcatcaagcaccttgcatcgtataaaacaagtgatcaatcatttatctctgaatactattgtctactttataaacaagagttaccaaaggaattgcaaccatgctttatttacttaggtcatttcctagaaaatcaattgatagatccagaaaagttgtcccatttatggatgatcgaagggttattatcaacaagacaaagtgttgttaaagggcatcagagcatgactgagagatatctgaaagaactataacgtatgggcgtggtagagctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="36090" stop="34904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35790" g_stop="35644" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35643" i_stop="35520" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="35204" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="463" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E201323" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35790" e_stop="35644"/>
          <exon e_start="35519" e_stop="35204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTACATAACATGAATTCCTTGAACGAGGATGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAGGTCAGTTAATTTAATTCTACTCTGCTTTTGTTTTAAAAGTGCCACTAAGTGATACTTATTTGAAAAATAATAATAGTAGATCCTCTCATATGATATGTCTAATACAGTATCTAACTCTGTGCAGATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCATCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCA</genome_strand>
        <mrna_strand>TTGTAACTACCCGAGTTGAATATGTATCGAAATACATATCAAAAAAACACAGTCAGCCTGTATATAACATGAAGTCCTTGAACGAGGGTGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAG............................................................................................................................ATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCACCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTATAACGTATGGGCGTGGTAGAGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374882" ref_strand="+" ref_description="SGN-E374882 [TUS-15-M21](-)">
      <seq>tagcaagtgggaagttgcagcttgattcagaaaattatggattccctcggaggttaaagcagttaactttatcgggtacgtggttggattgggaggagatacacagagcagttggccatttggagcttcttgaagtgttgaaggtgaaagagaatgcatttaggggggattcttgggagttgaagaaggattacgtgtttccttgtcttaaggtattatggattgaaaggtcagaactagtttattggaagggttgtgatgagaattttccgagcttagagaggcttgtccttcgtaatttaaataagcttgaggaaatccctataaactttgccaacataagcaacctgaaaatgatggaactggtgaatacaaccaaatcaacggttaaatctgcccagaaaatagaatcccaaagtgtatgtactggattcaagctaaccattttcccgcccgatacataactctcattgcaactaatcaaatctcttcagaggtcagccagttactactttcttttgtcaactgaatgtcgtcgtgtttatgtcctccttgcaccccttcttttggctctcaactttctatatctgcaactgaattggtgtgcctatattctcctttggttttgtcattttgtgattgggattagtgtgctctttctttttctttatatatatatataaaaaaaattatgtttcttatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="44405" stop="43098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44105" g_stop="43391" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E374882" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44105" e_stop="43391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGTGGGAAGTTGCAGCTTGATTCAGAAAATTATGGATTCCCTCGGAGGTTAAAGCAGTTAACTTTATCAGGTACGTGGTTGGATTGGGAGGAGATACACAGAGCAGTTGGCCATTTGGAGCTTCTTGAAGTGTTGAAGGTGAAAGAGAATGCATTTAGGGGGGATTCTTGGGAGTTGAAGAAGGATTACGTGTTTCCTTGTCTTAAGGTATTATGGATTGAAAGGTCAGAACTAGTTTGTTGGAAGGGTTGTGATGAGAATTTTCCGAGCTTAGAGAGGCTTGTCCTTCGTAATTTAAATAAGCTTGAGGAAATCCCTATAAACTTTGCCAACATAAGCAACCTGAAAATGATGGAACTGGTGAATACAACCAAATCAACGGTTAAATCTGCCCAGAAAATAGAATCCCAAAGTGTATGTACTGGATTCAAGCTAACCATTTTCCCGCCCGATACATAACTCTCATTGCAACTAATCAAATCTCTTCAGAGGTCAGCCAGTTACTACTTTCTTTTGTCAACTGAATGTCGTCGTGTTTATGTCCTCCTTGCACCCCTTCTTTTGGCTCTCAACTTTCTATATCTGCAACTGAATTGGTGTGCCTATATTCTCCTTTGGTTTTGTCATTTTGTGATTGGGATTAGTGTGCTCTTTCTTTTTCTTTATATATATATATAAAAAAAATTATGTTTCTTATGTATAATGTACTT</genome_strand>
        <mrna_strand>TAGCAAGTGGGAAGTTGCAGCTTGATTCAGAAAATTATGGATTCCCTCGGAGGTTAAAGCAGTTAACTTTATCGGGTACGTGGTTGGATTGGGAGGAGATACACAGAGCAGTTGGCCATTTGGAGCTTCTTGAAGTGTTGAAGGTGAAAGAGAATGCATTTAGGGGGGATTCTTGGGAGTTGAAGAAGGATTACGTGTTTCCTTGTCTTAAGGTATTATGGATTGAAAGGTCAGAACTAGTTTATTGGAAGGGTTGTGATGAGAATTTTCCGAGCTTAGAGAGGCTTGTCCTTCGTAATTTAAATAAGCTTGAGGAAATCCCTATAAACTTTGCCAACATAAGCAACCTGAAAATGATGGAACTGGTGAATACAACCAAATCAACGGTTAAATCTGCCCAGAAAATAGAATCCCAAAGTGTATGTACTGGATTCAAGCTAACCATTTTCCCGCCCGATACATAACTCTCATTGCAACTAATCAAATCTCTTCAGAGGTCAGCCAGTTACTACTTTCTTTTGTCAACTGAATGTCGTCGTGTTTATGTCCTCCTTGCACCCCTTCTTTTGGCTCTCAACTTTCTATATCTGCAACTGAATTGGTGTGCCTATATTCTCCTTTGGTTTTGTCATTTTGTGATTGGGATTAGTGTGCTCTTTCTTTTTCTTTATATATATATATAAAAAAAATTATGTTTCTTATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210192" ref_strand="+" ref_description="SGN-E210192 [cLEC-40-M5]">
      <seq>tacttgaatgaactagacagcaatgagcttactgatggtaacacaaaggacatccaatggccaaataaaaacattccgcgtgcatgacatgttacatgagttctgtacgctcgaagcaagtgaggaaaattttttcaaagaaataaaactaggtgtcgagcaatctttccccagaaaccaggaattatccacatttcgccgactcagcattgattcttctgttcaagaattcatttctaccaacccgtatggtgatggcattcgttcattcctctgtttctcctctcggaacattgcgatgtccccatatgagttagagacaatcccaaaatcctttccacttctgagggttcttgacattgagtccatattatttgagttagagacaattcgaaaatccccattccggaagcaggtctttcagctatatcatttgagataccttgctatatcaagtgactcgttaaagatccttcctaaattcatggaggacctgtggaatctacaaaccctcataatttcgactcaacaagagacattgaacatagaagcagacatatgtaacatgccacaccttaggcatgttcacacaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45207" stop="44012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44907" g_stop="44312" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E210192" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44907" e_stop="44312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGAATGAACTTGTCAGCAA-GAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCGAAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATACTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</genome_strand>
        <mrna_strand>TACTTGAATGAACTAGACAGCAATGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGACTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCAAAATCCTTTCCACTTCTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATTCGAAAATCCCCATTCCGGAAGCAGGTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATCCTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374883" ref_strand="+" ref_description="SGN-E374883 [TUS-15-M21]">
      <seq>aagcttgcttcttatattgtggtgcttttcctaaaggttccgagatccctgcttggaagatagtccggttgtggatcgcggaagggttcattcgagaaacaacgggatcaaaaattgaaagtgtagcagagggttacttgaatgaacttgtcagcaagagcttactgatggtaacacaaaggacatccaatggccaaataaaaacattccgcgtgcatgacatgttacatgagttctgtacgctcgaagcaagtgaggaaaattttttcaaagaaataaaactaggtgtcgagcaatctttccccagaaaccaggaattatccacatttcgccgcctcagcattgattcttctgttcaagaattcatttctaccaacccgtatggtgatggcattcgttcattcctctgtttctcctctcggaacattgcgatgtccccatatgagttagagacaatcccaaaatcctttccacttctgagggttcttgacattgagtccatattatttgagttagagacaatccgaaaatccccattccggaagcagttctttcagctatatcatttgagataccttgctatatcaagtgactcgttaaagatccttcctaaattcatggaggacctgtggaatctacaaaccctcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45341" stop="44090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44390" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E374883" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCGAAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATACTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAAT</genome_strand>
        <mrna_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCAAAATCCTTTCCACTTCTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATCCTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204825" ref_strand="+" ref_description="SGN-E204825 [cLEC-14-K18]">
      <seq>aagcttgcttcttatattgtggtgcttttcctaaaggttccgagatccctgcttggaagatagtccggttgtggatcgcggaagggttcattcgagaaacaacgggatcaaaaattgaaagtgtagcagagggttacttgaatgaacttgtcagcaagagcttactgatggtaacacaaaggacatccaatggccaaataaaaacattccgcgtgcatgacatgttacatgagttctgtacgctcgaagcaagtgaggaaaattttttcaaagaaataaaactaggtgtcgagcaatctttccccagaaaccaggaattatccacatttcgccgcctcagcattgattcttctgttcaagaattcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45341" stop="44372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44672" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E204825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTC</genome_strand>
        <mrna_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207118" ref_strand="+" ref_description="SGN-E207118 [cLEC-30-E3]">
      <seq>tttcttaaaatcatcaaccaattcaccagaaacactgaacaatatcgatatgtaactgaggaggctctagctgaagtaatacgcaaacatttgttgttcggaaagtatctgattgtattggatgatgtgtggacacaggaacctttggatgatgtcaaaattgctttaccaaacaagatgagaggtaaagtcttgtttaccactcgagatgacgaggtgggaaaattttgttgcaatgaacctcatcatataaaattcctaaccgaccacgaatgttgggagctactacagaagaaggttttccacaaggataaatgtcccctggacttggaagtactcgggaagcgcatagctaagaaatgtatgggtcttcctcttgcagctttggtgattgcgggagccctaaccgggagaggcaagactaaaagtgagtgggaaatagtgcatcaatttgtgagtgaacacattattagtagtgatattaggatgaccaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45879" stop="44780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45579" g_stop="45080" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E207118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45579" e_stop="45080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</genome_strand>
        <mrna_strand>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544378" ref_strand="+" ref_description="SGN-E544378 [TUS-66-K22](-)">
      <seq>ccaatatttccgatggatttcagctcctcctggtcataaagaaacaacatatatnccattactctctgatttttttactaatagtactaaagatagcattccgattaaaaatatacatacctggccaaaccatctccttaaataacttccagctgttttcttcggttaaaggcctcttttcatgaatatgaattgcttgagttatactttctgctacttgtcttgctcgagtcgtaatcagtatgatgcaacctttagctcccaggacagaacgcaacatccgccaatcatcaattgagcctactccttgtagaacaatcaacgtccttgacatttcaagatgttgtctgacacaatcttccaaactagttgtggacatgtcaacatacttgtcatctatacgacttccttcaaacaactcgaaaacatgttgaagtgcgtcatgggcattgatgttttcagatagacgaatattgacaagatgaggatgtccaaactctttaacaatgcgagggtcgttgtatatttcattaacaagtgtagattttcccatgccactacgtccccatatgggaactgcttggaaatcgacttctgatgatacttgtgaattaagtaacaaaacttgtattatctcctctttttcgtcctccattccaacaacaactgcaccgtcttcatggttgtaaacaaacttgttgttttgcctcatcaattgttggttgttgttggacttttgcaatagagcaattcctttcatcacccgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="51154" stop="49786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50854" g_stop="50079" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E544378" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50854" e_stop="50079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATATTGCCGATTGGATTTCAGCTCCTCCTGGTCATAAAGAAACAACATATATACCA-T--T-T-TGA-ACCAAAACAACATAGTACTAAAGATAGCATTCCGATTAAAAATATACATACCTGGCCAAACCATCTCCTTAAATAACTTCCAGCTGTTTTCTTCAGTTAAAGGCCTCTTTTCATGAATATGAATTGCTTGAGTTATACTTTCTGCTACTTGTCTTGCTCGAGTCGTAATCAGTATGATGCAACCTTTAGCTCCCAGGACAGAACGCAACATCCGCCAATCATCAATTGAGCCTACTCCTTGTAGAACAATCAACGTCCTTGACATTTCAAGATGTTGTCTGACACAATCTTCCAAACTAGTTGTGGACATGTCAACATACTTGTCATCTATACGACTTCCTTCAAACAACTCGAAAACATGTTGAAGTGCGTCATGGGCATTGATGTTTTCAGATAGACGAATATTGACAAGATGAGGATGTCCAAACTCTTTAACAATGCGAGGGTCGTTGTATATTTCATTAACAAGTGTAGCCTTTCCCATGCCACTACGTCCCCATATGGGAACTGCTTGGAAATCGACTTCTGATGATACTTGTGAATTAAGTAACAAAACTTGTATTATCTCCTCTTTTTCGTCCTCCATTCCAACAACAACTGCACCGTCTTCATGGTTGTAAACGAACTTGTTGTTTTGCCTCATCAATTGTTGGTTGTTGTTGGACTTTTGCAATAGAGCAATTCCTTTCATCACCCGACACAAACTCGTGA</genome_strand>
        <mrna_strand>CCAATATTTCCGA-TGGATTTCAGCTCCTCCTGGTCATAAAGAAACAACATATATNCCATTACTCTCTGATTTTTTTACTA-ATAGTACTAAAGATAGCATTCCGATTAAAAATATACATACCTGGCCAAACCATCTCCTTAAATAACTTCCAGCTGTTTTCTTCGGTTAAAGGCCTCTTTTCATGAATATGAATTGCTTGAGTTATACTTTCTGCTACTTGTCTTGCTCGAGTCGTAATCAGTATGATGCAACCTTTAGCTCCCAGGACAGAACGCAACATCCGCCAATCATCAATTGAGCCTACTCCTTGTAGAACAATCAACGTCCTTGACATTTCAAGATGTTGTCTGACACAATCTTCCAAACTAGTTGTGGACATGTCAACATACTTGTCATCTATACGACTTCCTTCAAACAACTCGAAAACATGTTGAAGTGCGTCATGGGCATTGATGTTTTCAGATAGACGAATATTGACAAGATGAGGATGTCCAAACTCTTTAACAATGCGAGGGTCGTTGTATATTTCATTAACAAGTGTAGATTTTCCCATGCCACTACGTCCCCATATGGGAACTGCTTGGAAATCGACTTCTGATGATACTTGTGAATTAAGTAACAAAACTTGTATTATCTCCTCTTTTTCGTCCTCCATTCCAACAACAACTGCACCGTCTTCATGGTTGTAAACAAACTTGTTGTTTTGCCTCATCAATTGTTGGTTGTTGTTGGACTTTTGCAATAGAGCAATTCCTTTCATCACCCGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544379" ref_strand="+" ref_description="SGN-E544379 [TUS-66-K22]">
      <seq>ctatgaaagaaggtggacgcttgtggttgtgatcatatctctcagtaaccttttgagtaaatgactcaggcatctttatcatcttgaattcttgaagagaatctagaaattctgaaccatctgggagcgttaccagttcattgcagtattcaattttgagatgagaaagcaatggcatggctgaaatttctaccctccatttctcgaatgagaataatcttgagagttccaagtgtttgagctcttgaaaacccgaagcagaacataccatctgattcactttgaaagcatcatcttcgagcaccagaagccgtaggttgttgagtttttctagtgttggcattggatcttcctccagttgagtgctacgtaggacaatctccgtgaaattttgagagatatcaaagtatggtggtagcgttttaatataaccctcaaaagacactattggtggaaccccggaatttaatatctcacgaaaggcagagtgttttgtatctgaataacaatcaaagtttttaacttcaagggagcaacgacgaagccccttatcactcctacttttcataaagtcagttattaaattaagatcctcaacacatacttcaacctttgcatctaggttccggagttttttcaatttgaagagatggcgtatctcacacaacttggagtttaaattctttagtgtttgaagctctgccaatccatcaagtcggagttttttcccattttgcagttggaatactagtggaaagatacaatgttgcaaccttgccattttctgaacacattatatggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="52804" stop="51399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="51699" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E544379" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="51699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACTAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCATTGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAGTTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGG-AAGATACAAATGTTGCAACCTTGCCATTTTCTGAAACACATTATATGGTATG</genome_strand>
        <mrna_strand>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACCAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCAATGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAATTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGGAAAGATAC-AATGTTGCAACCTTGCCATTTTCTG-AACACATTATATGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306231" ref_strand="+" ref_description="SGN-E306231 [cLEY-13-P9]">
      <seq>tatgaaagaaggtggacgcttgtggttgtgatcatatctctcagtaaccttttgagtaaatgactcaggcatctttatcatcttgaattcttgaagagaatctagaaattctgaaccatctgggagcgttaccagttcattgcagtattcaattttgagatgagaaagcaatggcatggctgaaatttctaccctccatttctcgaatgagaataatcttgagagttccaagtgtttgagctcttgaaaacccgaagcagaacataccatctgattcactttgaaagcatcatcttcgagcaccagaagccgtaggttgttgagtttttctagtgttggcattggatcttcctccagttgagtgctacgtaggacaatctccgtgaaattttgagagatatcaaagtatggtggtagcgttttaatataaccctcaaaagacactattggtggaaccccggaatttaatatctcacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="52803" stop="51725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52503" g_stop="52025" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E306231" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52503" e_stop="52025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACTAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCATTGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAA</genome_strand>
        <mrna_strand>TATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACCAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCAATGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538051" ref_strand="+" ref_description="SGN-E538051 [TUS-56-P14](-)">
      <seq>cttatacaccttgttcctcacaatgacaaaataatcgatccaaatctcacctctgtaaacatcgaaataaacagcttttaccaacctccttgggttacaagctacttcaccattctcttctcattcacactattcggaataatcatctctattgctcagactatttacgccgtgctagcataccacaaacccccatcctcccctacataaccgtgtgaattagtataaaaatttgtaggaaaataagaggagttttcatacgaaaatctctatctaattcaaacttttcccaatgtttgaacactttgataaattgtatttttttgttttttgttttatacaaacagtgtcatatccatatatatgttattaacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="59281" stop="58312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58981" g_stop="58613" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="386"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E538051" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58981" e_stop="58613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAGTAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGA--AG-----ATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</genome_strand>
        <mrna_strand>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAATAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGAGGAGTTTTCATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268483" ref_strand="+" ref_description="SGN-E268483 [cLEI-13-E11]">
      <seq>ttatacaccttgttcctcacaatgacaaaataatcgatccaaatctcacctctgtaaacatcgaaataaacagcttttaccaacctccttgggttacaagctacttcaccattctcttctcattcacactattcggaataatcatctctattgctcagactatttacgccgtgctagcataccacaaacccccatcctcccctacataaccgtgtgaattagtataaaaatttgtaggaaaataagaggagttttcatacgaaaatctctatctaattcaaacttttcccaatgtttgaacactttgataaattgtatttttttgttttttgttttatacaaacagtgtcatatccatatatatgttattaacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="59280" stop="58312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58980" g_stop="58613" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="385"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E268483" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58980" e_stop="58613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAGTAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGA--AG-----ATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</genome_strand>
        <mrna_strand>TTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAATAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGAGGAGTTTTCATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361115" ref_strand="+" ref_description="SGN-E361115 [cLPP-13-B1]">
      <seq>ttccctcttccgcctgatatttcactgattttttaattaaaaaaacaaaacttctcctcgtcgccgtaatccacccgcatttttttttataaaaaaaaaatgccgcctcaatttcaccttccccaaactataaaaactcaacccgctaaaaaatccgacccgaatgatgatccaatcatcgtcgtcgatctcgtatggccattcggagatctagaaggacttgatcgggatgattttcgggaggcagcttacgagattttcttcacggcgtgtaggtcatcgccggggtttggtggtaggacggcggcaatttcttcgtcatcagacgggtcgggtgaaggaaatggatccgggtcgggtacgggtttatccggtcccgggtcaccgaaaccgaccggagtagggatggcgataactagtagggtgaaaacggcgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61213" stop="62253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61513" g_stop="61953" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E361115" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61513" e_stop="61953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCTTCCGCCTGATATTTCACTGATATTTTAATTAAGAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</genome_strand>
        <mrna_strand>TTCCCTCTTCCGCCTGATATTTCACTGATTTTTTAATTAAAAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTAT-AAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATCCGACCCGAATGATGATCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTTGATCGGGATGATTTTCGGGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGCGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363260" ref_strand="+" ref_description="SGN-E363260 [cLPP-4-G9]">
      <seq>tccctcttccgcctgatatttcactgattttttaattaaaaaaacaaaacttctcctggtcgccgtaatccacccgcattttttttttataaaaaaaaaatgccgcctcaatttgaccttccccaaactataaaaactcaacccgctaaaaaatccgacccgaatgatgatccaatcatcgtcgtcgatctcgtatggccattcggagatctagaaggacttgatcgggatgattttcgggaggcagcttacgagattttcttcacggcgtgtaggtcatcgccggggtttggtggtaggacggcggcaatttcttcgtcatcatacgggtcgggtgaaggaaatggatccgggtcgggtacgggtttatccggtcccgggtcaccgaaaccgaccggagtaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61214" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61514" g_stop="61920" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E363260" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61514" e_stop="61920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTTCCGCCTGATATTTCACTGATATTTTAATTAAGAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGAT</genome_strand>
        <mrna_strand>TCCCTCTTCCGCCTGATATTTCACTGATTTTTTAATTAAAAAAACAAAACTTCTCCTGGTCGCCGTAATCCACCCGCATTTTTTTTTTATAAAAAAAAAATGCCGCCTCAATTTGACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATCCGACCCGAATGATGATCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTTGATCGGGATGATTTTCGGGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGCGGCAATTTCTTCGTCATCATACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332951" ref_strand="+" ref_description="SGN-E332951 [cTOD-19-H3]">
      <seq>aacaaaacttctcctcgtcgccgtaatccacccgcatttttttttttgaaaaaaaaaatgccgcctcaatttcaccttccccaaactataaaaactcaacccgctaaaaaattcgacccgaatgatgacccaatcatcgtcgtcgatctcgtatggccattcggagatctagaaggactcgatcgggatgattttcgagaggcagcttacgagattttcttcacggcgtgtaggtcatcgccggggtttggtggtaggacggcggcaatttcttcgtcatcagacgggtcgggtgaaggaaatggatccgggtcgggtacgggtttatccggtcccgggtcaccgaaaccgaccggagtagggatggcgataactagtagggtgaaaacggcgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61256" stop="62253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61556" g_stop="61953" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E332951" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61556" e_stop="61953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</genome_strand>
        <mrna_strand>AACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGCGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332530" ref_strand="+" ref_description="SGN-E332530 [cTOD-18-E3]">
      <seq>aaaacggcgttggggttgaagatgttgaagaagtctccgtcgcggagaaagtccggtggcggtagtggtgttaatggtccgtcttcgcctgctggagttgcgagcccgagaacaccctcgggctcgatcatgcagcaggcgaaaatgcggaggccattgacgtccgccgagattatgaggttgcagatgagagtgtcggagcagagtgataataggctaaggaaaactcttatgagaactctcgtcggccaaattgggaggagagcagagacaataatcttacctttggagcttttacgccaccttaaaccatctgaattcaacgatcctcaagaataccatctatggcaaaagcgtcagcttcgtatcctggatataggactactccttcacccttctatcccagtagaaaaagacaatgcatctgcatcgcgattactagagatcattcaagcttgtgagatcaaaacaatcgacactagcaagaattccgagacgatgaaatcgctaagtaatgcagtagtctccttagcttggagaagtgttgatgacactcctagtgatacatgtcgttgggctgatggattccctctcaacatccacatttacacggctctcttgggatcgatatttgatctttaagacgatacgttagtccttaatgaggttgatgagcttcttgaatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61640" stop="63822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61940" g_stop="62191" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62192" i_stop="63084" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63085" g_stop="63522" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="691" r_length="439" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E332530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61940" e_stop="62191"/>
          <exon e_start="63085" e_stop="63522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGACCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAAGTACGTAATTTGCATGCATTTCAAACTATTTTATGTTATTTTAATACTAAAACTGCACATTCATCGTAGAATATTATGATACGAAAATATAAATTTATATCTCGTAAAAAAGAGTTATATTTCTCATTAAGCGCATATATTAAAGACCGGCCAGTCCAAACAAATGACCCTTTTTTTTTTCAAAACTATTTGATATCCCAAAATTGCAAATGGTTTTGTGGAAAAGTTCTTTTAAATTTTTTTATTTGTTTTATTAAAAGAAGATGTTTTGTTTTTCTTCTTAATAAACCATATTTTTTCAATTTTTTTATTACATTGACCTACATTTTGTATGCTTTATCTCTCTATTATTCCATTTGTTTTAATCTATGAGTCTTAATTTTCTTTTTTAGTATGTTTAGAAAAAATGTAATTTAATACTTTATTTGTTTAAATTTATTTGTCTGATTTTGACATGACACGAAATTTAAAAAAGTAAAGAAGATCTTTTAATCTTATAGTGTTAAACTAAAGATATATAGAATGTACTAAAACGTTGTTTGATTTTGTGATCTTAGACATGCTAAGTGAAAAGTTAAAATTAAAAATTTGTAAGACAAACAGATTGAAACAAAGAGAGTATATTTGTTAGTAACTCGACATGTTTAAAATCATAAGATTCAAAAACCATTTCGATGCATTATAAACATTTTTAGATTAAAGCCATAAGCCAAGATTATAATGTCTTTACTTATTTTCTTCGTACTCAAACTAAGACACATAAACTGAAACAGACTAAGTACATGTTTCTTTAAATACTACTAGTAACATTCTTATTGTCTCAACTCATAATGTCTGTAATGTTTGCATCCTAGCATTACATTAGTAGCTCAAATGGAAGAATTTTTGTGCAGATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTAAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAA-TTGATG</genome_strand>
        <mrna_strand>AAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGATCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGACTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTTAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359635" ref_strand="+" ref_description="SGN-E359635 [cLPP-5-B18]">
      <seq>gacaataatcttacctttggagcttttacgccaccttaaaccatccgaattcaacgatcctcaagaataccatctatggcaaaagcgtcagcttcgtatcctggatataggcctactccttcacccttctatcccagtagaaaaagacaatgcatctgcatcgcgattactagagatcattcaagcttgtgagattaaaacaatcgacactagcaagaattccgagaccatgaaatcgctaagtaatgcagtagtctccttagcttggagaagtgttgatgacactcctagtgatacatgtcgttgggctgatggattccctctcaacatccacatttacacggctctcttgggatcgatatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="62802" stop="63769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63102" g_stop="63469" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E359635" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63102" e_stop="63469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATC</genome_strand>
        <mrna_strand>GACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCCGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATTAAAACAATCGACACTAGCAAGAATTCCGAGACCATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329502" ref_strand="+" ref_description="SGN-E329502 [cTOD-11-A5]">
      <seq>tgagatcaaaagactctgaaacatggaatccaaaatccaaaagtgagccatatgcacaatcagcaattgatctagtgagacattccaaggaagcagtagacaatttcttcgaaattcctacaatcattactgagaatttggttaatgatatcgctgatggcatcgagaacttattcaaagattatgttatctttgttgcatcatgtggggctaaacagaactacatgcctgcacttcctcctttgacaagatgcggccaagactcaaaatttgtgaagatgtggaagaaagctgcctgtagtgtcggatcaaacgatccaaaccagcatttgacagacgaagataacaatccccgtccttcaacaagccgaggaactcaacgcctctatgtaaggcttaacaccttgcattacctccttcaacaactcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="64177" stop="65642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64477" g_stop="64496" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64497" i_stop="64849" i_length="353">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64850" g_stop="65036" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="207" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65037" i_stop="65118" i_length="82">
            <donor d_prob="0.200" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65119" g_stop="65342" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="431" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E329502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64477" e_stop="64496"/>
          <exon e_start="64850" e_stop="65036"/>
          <exon e_start="65119" e_stop="65342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCAAAAGACTCTGAAGTAAGTCATTTTGTTACTCTTGCTATTTATAAATAGGGACTCTTATAGTCATACTAAAAGTAATTAGAAAGACGGGTAGCCCAACGTATAAAGCATCCCCGTTCACACAGGGTCTTTGGAAGGGCTGCATTCCAAGGGGGTGTAATGTCGAAACAAAGTCCCTCTGTTGTTCACTCAAAGAGGCAATACATCCTTTGTTTGAATGGTACTTCGTTGCAGATAAAGATTATACGGACATTCTAGAAAAATGTCAGCTTATCGTGATGCAAGCATGAGTGGCTGATTCCACAACTTGAACACATGTCACACGGAGACAACTATACTGTTTTAATGCAAAATATTTTGTTATGCAGACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTGGTAAGAACGAGTTTAACGAACCATATTCGTTCAAGTATTTTGATGCGTGGGTCATCTTTTGATAGTCATAATCTCTCTGCAGGGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</genome_strand>
        <mrna_strand>TGAGATCAAAAGACTCTGAA.................................................................................................................................................................................................................................................................................................................................................................ACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTG..................................................................................GGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547197" ref_strand="+" ref_description="SGN-E547197 [TUS-70-P7]">
      <seq>gtctaatgttcttcgattccaactctgtcttctacgcaagcctatacgtaggggacgtagagaatgcacgtattcgaccagctctaaggatactcaaacaaaacctaactcttttgtgtgctatcctcactgaccgggctcaagcattagcgcttaaagaagtcatgagagcgtctttcgaggcataccttatggttttactagccggtggaccgcgaagaaacttctttaggatggatcatcaaatgattgaggaagattttgaaagtttaaagaaggtattttgtacttgtggtgaaggtttgatactagaagatgttgtggaaaaagaagctgcaatagttgaagagatagtgcctttaatgggacaatcaacagaacaattggttgaagattttagcaatttggcttgtgaaacaagtggagttggagttgttgtgggaaatggacaaaaattgcctatgccaccaacaacaggaaaatggaatagatcagatgctaacacaatcttgagggtactttgtcatagaaatgataaaattgctaataatttcttgaagaaaacattccacttagcaaagaggaagggttgaaaaaaatttgaactaaaaaaagccgtcaactcggaccttctactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="65200" stop="66440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65500" g_stop="66140" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E547197" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65500" e_stop="66140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGGGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGTCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTGGCAAAGAGGAGGGGTTGAAAAACAATTTGATCTAAAAAAAGCCGTCAACTCGGACCCTCTACTGTC</genome_strand>
        <mrna_strand>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGAGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGCCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGTTGGAGTTGTTGTGGGAAATGGACAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTAGCAAAGAGGAAGGGTTGAAAAA-AATTTGAACTAAAAAAAGCCGTCAACTCGGACCTTCTACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360325" ref_strand="+" ref_description="SGN-E360325 [cLPP-8-O9]">
      <seq>tctaatgttcttcgattccaactctgtcttctacgcaagcctatacgtaggggacgtagagaatgcacgtattcgaccagctctaaggatactcaaacaaaacctaactcttttgtgtgctatcctcactgaccgggctcaagcattagcgcttaaagaagtcatgagagcgtctttcgaggcataccttatggttttactagccggtggaccgcgaagaaacttctttaggatggatcatcaaatgattgaggaagattttgaaagtttaaagaaggtattttgtacttgtggtgaaggtttgatactagaagatgttgtggaaaaagaagctgcaatagttgaagagatagtgcctttaatgggacaatcaacagaacaattggttgaagattttagcaatttggcttgtgaaacaagtggagttggagttgttgtgggaaatggacaaaaattgcctatgccaccaacaacaggaaaatggaatagatcagatgctaacacaatcttgagggtactttgtcatagaaatgataaaattgctaataatttcttgaagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="65201" stop="66365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65501" g_stop="66065" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E360325" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65501" e_stop="66065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGGGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGTCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACA</genome_strand>
        <mrna_strand>TCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGAGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGCCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGTTGGAGTTGTTGTGGGAAATGGACAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549496" ref_strand="+" ref_description="SGN-E549496 [TUS-70-P7](-)">
      <seq>aatcaacagaacaattggttgaagattttagcaatttggcttgtgaaacaagtggagttggagttgttgtgggaaatggacaaaaattgcctatgccaccaacaacaggaaaatggaatagatcagatgctaacacaatcttgagggtactttgtcatagaaatgataaaattgctaataatttcttgaagaaaacattccacttagcaaagaggaggggttgaaaaacaatttgaactaaaaaaagccgtcaactcggaccttctactgtcgtacctatgtcagatccttctaaaatcacacaccaaacgatatatttaaagagtcagagcaacataagcctaaaaaacggaaaaagagaggtttcacttgtacagacaaatgaagaagaaagtaaattttctaagtatatatgctattaattaaagttaatttttatttgaaggatgtaaattaaagccttctagactataaaaaggtttgtaactttgaactaatttttttctggagtatatatgctatgaatttttttttttttttgaaggattgtaaagtaaagccttctagaataaaaaaaanggtttgtaacatgagtatcttgagcaatattgtatataatgcttttgatctttatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="65569" stop="66812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65869" g_stop="66519" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E549496" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65869" e_stop="66519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTGGCAAAGAGGAGGGGTTGAAAAACAATTTGATCTAAAAAAAGCCGTCAACTCGGACCCTCTACTGTCGTATCTGTGTCAGATCCTTCTAAAATCACACACCAAACAGTATGTTTGAAGAGTCAGAGCAACATAAGCCTAAAAGACGGAAGAAGAGAGGTTTCACTTGTACATACAAATGAAGAAGAAAGTAAAATTTTCTAAGTATATATGCTATTAATTAAAGTTTATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTATAAAAAAGGTTTGTAACTTTGAACTAAATTTTTTCTAAAGTATATATGCTATGAAAGTGTTCTTTTTTTTTCTTTTTAAAGGATTTGTAAAGTAAAGCCTTCTTGAATATAAAAAA-GGTTTGTAA-ATGAGTATCTTGAG-AATATTG--TATAATGCTTTTGATCTTTATCTAAATTACTCG</genome_strand>
        <mrna_strand>AATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGTTGGAGTTGTTGTGGGAAATGGACAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTAGCAAAGAGGAGGGGTTGAAAAACAATTTGAACTAAAAAAAGCCGTCAACTCGGACCTTCTACTGTCGTACCTATGTCAGATCCTTCTAAAATCACACACCAAACGATATATTTAAAGAGTCAGAGCAACATAAGCCTAAAAAACGGAAAAAGAGAGGTTTCACTTGTACAGACAAATGAAGAAGAAAGT-AAATTTTCTAAGTATATATGCTATTAATTAAAGTTAATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTAT-AAAAAGGTTTGTAACTTTGAACTAATTTTTTTCTGGAGTATATATGCTATG-AA----T-TTTTTTTTT-TTTTTGAAGGA-TTGTAAAGTAAAGCCTTCTAGAATAAAAAAAANGGTTTGTAACATGAGTATCTTGAGCAATATTGTATATAATGCTTTTGATCTTTATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551924" ref_strand="+" ref_description="SGN-E551924 [cTSB-2-E21]">
      <seq>atgttgaaacatgaatttgaaaataagatccaacaatgtcaggaaacagcaaatgaattcgtagagacagaaaggaggaaaatggaagaaagaatgttccaacagcaacaagagtttgaaatgcttagaagacggttggaggagattgagtccgagctttggcattcaagagttggcagcagatcaactgaagtggaggagaacagctttgggaaaagactactggagatgtattctgaagacgcgggaatggtgaaatctatggatttggatagatcaattgatatggactgtggaaagaaagcagaaagtaacataattcaggcaatgttgggctatcctagcataaccaatgcaagagaaattgaagatccttctatcttattgcaacatttcaccaacaaatcattcttgagcaccgtgttcgaagaggaagaagaaggtaacgacagtgaaggggataaagagaatccttacgtcgaggaggtgcaaaaagaggtcattgaggaaaagacaatatgttccgacaatgtaagtagagtagaagatcgttccgatgatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="69600" stop="70764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69900" g_stop="70465" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E551924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69900" e_stop="70465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTC</genome_strand>
        <mrna_strand>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317466" ref_strand="+" ref_description="SGN-E317466 [cTOA-28-H16]">
      <seq>tgaaatctatggatttggatagatcaattgatatggactgtggaaagaaagcagaaagtaacataattcaggcaatgttgggctatcctagcataaccaatgcaagagaaattgaagatccttctatcttattgcaacatttcaccaacaaatcattcttgagcaccgtgttcgaagaggaagaagaaggtaacgacagtgaaggggataaagagaatccttacgtcgaggaggtgcaaaaagaggttattgaggaaaagacaatatgttccgacaatgtaagtagagtagaagatcgttccgatgatctctctagtgacaacacagccccttccagaaaagagctaattcaaaatatattcaaactctgcggaaattctagagaactctctcagcaatgtattactaccccctcagtgcctgcagaaaagagagttaaagacactgaatcaaaatcacctccagttaaagaaattgtagagaattcacctataacaaaaaatcataatttctctactgagaaagtaaatgattcaaaggagaacttcaacccgaattcagagttgaaatgggaagctgcatcaaaggagaatcccatgattatcactacactaacggatcgtttggtttgaaagacaagttatngatgggattagttgtgctcagactatttatcctggattacttatcctgagaatatttcttattgtttgtttcgtttgttgtattaagacnatacgcattgtattctttcaaagaaaaagttgtttgtatctgaacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="69853" stop="71237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70153" g_stop="70942" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E317466" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70153" e_stop="70942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTAT-GATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGATTATTTCTTATTGTTTGTTTCGCTTGTTGTATTAAAGACAATACGCATTGTATTCTTTCGAAGAAAAAGTTGTTTGTATCTGAACATACACTCCA</genome_strand>
        <mrna_strand>TGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTTATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTATNGATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGAATATTTCTTATTGTTTGTTTCGTTTGTTGTATT-AAGACNATACGCATTGTATTCTTTCAAAGAAAAAGTTGTTTGTATCTGAACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352722" ref_strand="+" ref_description="SGN-E352722 [cTOS-11-L11]">
      <seq>ttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacaggtttcgttatcatccgtgataaacaacatattatcgaattcataaagaagcatttatcagcattgcactgggaagcagttgcatcaactgattccacctcggatcccgagcaggacaacgatgaggttgttttcgtcgtgcaaaagaaactgtggctcacaagtggaagcatcagagatacagaatagatagcagagtttgtaacacattttgctaattcattttctctctaggcctttagggtgttgaagaaaaaaaaatgtatgcccttaattttcagtttgaatttgtatttgcgggttatttattttctttttttactcccaacgcatttttatgtaagttttacaactgagagactacataatgtattcataggctattttttttttataattaatggattttaatatttgatcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="77477" stop="75856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77177" g_stop="77001" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76714" g_stop="76156" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="735" r_length="558" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E352722" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77177" e_stop="77001"/>
          <exon e_start="76714" e_stop="76156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAACGTATTTTAATATTTGATCATTTT</genome_strand>
        <mrna_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAG-AAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGGGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTTACAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAATGGATTTTAATATTTGATCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349924" ref_strand="+" ref_description="SGN-E349924 [cTOS-3-F13]">
      <seq>ttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacaggtttcgttatcatccgtgataaacaacatattatcgaattcataaagaagcatttatcagcattgcactgggaagcagttgcatcaactgattccacctcggatcccgagcaggacaacgatgaggttgttttcgtcgtgcaaaagaaactgtggctcacaagtggaagcatcagagatacagaatagatagcagagtttgtaacacattttgctaattcattttctctctaggcctttagggtgttgaagaaaaaaaaatgtatgcccttaattttcagtttgaatttgtatttgcgtgttatttattttctttttttactcccaacgcatttttatgtnagtttacaaactgagagactacataatgtattcataggctatttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="77477" stop="75888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77177" g_stop="77001" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76714" g_stop="76188" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="703" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E349924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77177" e_stop="77001"/>
          <exon e_start="76714" e_stop="76188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTT</genome_strand>
        <mrna_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAG-AAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTNAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352817" ref_strand="+" ref_description="SGN-E352817 [cTOS-11-O11]">
      <seq>ttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacaggtttcgttatcatccgtgataaacaacatattatcgaattcataaagaagcatttatcagcattgcactgggaagcagttgcatcaactgattccacctcggatcccgagcaggacaacgatgaggttgttttcgtcgtgcaaaagaaactgtggctcacaagtggaagcatcagagatacagaatagatagcagagtttgtaacacattttgctaattcattttctctctaggcctttanggtgttgaagaaaaaaaaatgtatgcccttaattttcagtttgaatttgtatttgcgtgttatttattttctttttttactcccaacgcatttttatgtaagtttacnaactgagagactacataatgtattcataggctattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="77477" stop="75893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77177" g_stop="77001" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76714" g_stop="76193" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="698" r_length="521" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E352817" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77177" e_stop="77001"/>
          <exon e_start="76714" e_stop="76193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTT</genome_strand>
        <mrna_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTANGGTGTTGAAG-AAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACNAACTGAGAGACTACATAATGTATTCATAGGCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702439" ref_strand="+" ref_description="SGN-E702439 [FA18CH07]">
      <seq>agcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacaaagtcagtggaagtggactggctccttggccagctcgattaagtagtcctcctccccgtcttgctgactttgggtattcgaatgaaatgtttgaaaaggacacggacacttggagggagagggttgaccattattggagtctgttaagttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacagggttcgttatcatccgtgataaacaacatattatcgaattcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78243" stop="76236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77943" g_stop="77574" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77443" g_stop="77331" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="483" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77222" i_length="109">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77221" g_stop="77001" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="704" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76714" g_stop="76536" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="883" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E702439" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77943" e_stop="77574"/>
          <exon e_start="77443" e_stop="77331"/>
          <exon e_start="77221" e_stop="77001"/>
          <exon e_start="76714" e_stop="76536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACGGTAATTTGTTTTAGTAATATTGGTTAACTTGTGCCATTTGGTTCAACACACGAGCTTAAGTGCTCCATTACAAACTTGATGACTCCTTACTTTCTCGGTTTATCAACAGGACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAA</genome_strand>
        <mrna_strand>AGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG.............................................................................................................GACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGGTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240766" ref_strand="+" ref_description="SGN-E240766 [cLED-24-G4]">
      <seq>gaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="77435" stop="76684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77135" g_stop="77001" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76714" g_stop="76695" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="155" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E240766" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77135" e_stop="77001"/>
          <exon e_start="76714" e_stop="76695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCT</genome_strand>
        <mrna_strand>GAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244707" ref_strand="+" ref_description="SGN-E244707 [cLED-38-K22]">
      <seq>agaaaagactgccttatccaagcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccanatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacaaagtcagtggaagtggactggctccttggccagctcgattaagtagtcctcctncccgtcttgctgactttgggtatttcaatgaaatgtttgaaaaggacacggacacttggagggagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78262" stop="76904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77963" g_stop="77574" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77443" g_stop="77331" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="503" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77222" i_length="109">
            <donor d_prob="0.747" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77221" g_stop="77204" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="521" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E244707" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77963" e_stop="77574"/>
          <exon e_start="77443" e_stop="77331"/>
          <exon e_start="77221" e_stop="77204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACGGTAATTTGTTTTAGTAATATTGGTTAACTTGTGCCATTTGGTTCAACACACGAGCTTAAGTGCTCCATTACAAACTTGATGACTCCTTACTTTCTCGGTTTATCAACAGGACACTTGGAGGGAGAGG</genome_strand>
        <mrna_strand>AGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCANATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTNCCCGTCTTGCTGACTTTGGGTATTTCAATGAAATGTTTGAAAAGGACACG.............................................................................................................GACACTTGGAGGGAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329475" ref_strand="+" ref_description="SGN-E329475 [cTOD-11-F5]">
      <seq>ttggaacgaaaagactgccttatccaagcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacaaagtcagtggaagtggactggctccttggccagctcgattaagtagtcctcctccccgtcttgctgactttgggtattcgaatgaaatgtttgaaaaggacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78269" stop="77031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77969" g_stop="77574" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77443" g_stop="77331" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="509" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E329475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77969" e_stop="77574"/>
          <exon e_start="77443" e_stop="77331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG</genome_strand>
        <mrna_strand>TTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231404" ref_strand="+" ref_description="SGN-E231404 [cLED-10-B10]">
      <seq>aaagactgccttatccaagcaggtcattcgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggataattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacatagtcagtggaagtggactggctccttggccagctcgattaagtagtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78260" stop="77084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77960" g_stop="77574" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77443" g_stop="77384" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="447" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E231404" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77960" e_stop="77574"/>
          <exon e_start="77443" e_stop="77384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTC</genome_strand>
        <mrna_strand>AAAGACTGCCTTATCCAAGCAGGTCATTCGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGATAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACATAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237569" ref_strand="+" ref_description="SGN-E237569 [cLED-19-F10]">
      <seq>aaagactgccttatccaagcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacaaagtcagtggaagtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78260" stop="77117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77960" g_stop="77574" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77443" g_stop="77417" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="414" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E237569" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77960" e_stop="77574"/>
          <exon e_start="77443" e_stop="77417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGAC</genome_strand>
        <mrna_strand>AAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACAAAGTCAGTGGAAGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701529" ref_strand="+" ref_description="SGN-E701529 [FA16AH10]">
      <seq>tactaggtgccaattaagtggccaagaagtagagatgaggtctggaaattgaacattcctcatacgcaccttgcaaatgagaaatctgaccagaactggatggttgtgaagggtgaaaagatagtatttcctggtggaggcactcactttcactatggagcagataagtacattgcgctaattgccaacatgctgaactttacaaacaataacttgaacgatgagggaaggatacggacagtttttgatgttggttgcggtgtggctagctttggtggttatcttctatcctctgatattatagcaatgtcattggcaccaaatgatgtgcatcagaatcaaatacagtttgctttagagagaggaattcctgcataccttggtgtccttggaacgaaaagactgcctatccaagcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78761" stop="77278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78571" g_stop="78566" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78565" i_stop="78457" i_length="109">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78456" g_stop="78274" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="189" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78273" i_stop="78169" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78168" g_stop="77578" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="779" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E701529" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78571" e_stop="78566"/>
          <exon e_start="78456" e_stop="78274"/>
          <exon e_start="78168" e_stop="77578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGGTGAATAGGCTGAAGCTATAGTGAAGTTGTTACCCTGGACATATTTCCAAATTTACTTCTAGTTTTTTTCTGACACTTGTATCATTTGCTCATTTATATGCTGTTATAGGTGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAACGTAAGGACTTCTTTTTCTTTCTCAGATATTGCAGAAATTTTAAAAAAGGGAACCTAGTAATATATGAAATGTTAAACTTTATCATACATGTAATTGTGATTGCAGATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCT</genome_strand>
        <mrna_strand>TACTAG.............................................................................................................GTGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAAC.........................................................................................................ATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCC-TATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541765" ref_strand="+" ref_description="SGN-E541765 [TUS-62-L15]">
      <seq>atttattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtagaaaagagaaagttaagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattggggctgtcttggttgttttcctttacatgtattttggatccaagagcggtggtgagtctgctcttgagtatggcagccgttctttgaggaaattgggatcgtcttatttgggtggggatgataactctgatctcagcagcaggcaagaggagaagtttggactggaagatggtgatggtggcatcgtccctaagagttttccagtttgtgatgatcgacattcagaattaattccgtgtctggacagacatctcatttatcaaatgagattaaagttggatttgtcactgatggagcactatgaaagacattgccccttgccagaaagacgttataattgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80960" stop="78291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80660" g_stop="80514" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="78887" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="578" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78730" g_stop="78591" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="718" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E541765" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80660" e_stop="80514"/>
          <exon e_start="79319" e_stop="78887"/>
          <exon e_start="78730" e_stop="78591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCAGTAAGTCAGTCTTTTTCCATTTCACAGCCCAATGTTATGTCACAAGGCTCTCCTCCAACCGCCAAGAGTGGTTAATTGGAAGAAAGGATGAGTTGCTGCATTTTGGTTGTTTCCTTTGTTTACCTTCTTAATTTTGTACTGGTCTTTCATTTGAAGGTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</genome_strand>
        <mrna_strand>ATTTATTCTCTGCAGAA-AA-ACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGGCTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA............................................................................................................................................................GTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214312" ref_strand="+" ref_description="SGN-E214312 [cLEC-77-L4]">
      <seq>ctctctgtccctccatttattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtagaaaagagaaagttaagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattggggctgtcttggttgttttcctttacatgtattttggatccaagagcggtggtgagtctgctcttgagtatggcagccgttctttgaggaaattgggatcgtcttatttgggtggggatgataactctgatctcagcagcaggcaagatgagaagtttggactggaagatggtgatggtggcatcgtccctaagagttttccagtttgtgatgatcgacattcagaattaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80974" stop="78399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80674" g_stop="80514" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="78887" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="592" r_length="433" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78730" g_stop="78699" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="624" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E214312" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80674" e_stop="80514"/>
          <exon e_start="79319" e_stop="78887"/>
          <exon e_start="78730" e_stop="78699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCAGTAAGTCAGTCTTTTTCCATTTCACAGCCCAATGTTATGTCACAAGGCTCTCCTCCAACCGCCAAGAGTGGTTAATTGGAAGAAAGGATGAGTTGCTGCATTTTGGTTGTTTCCTTTGTTTACCTTCTTAATTTTGTACTGGTCTTTCATTTGAAGGTTTGTGATGATCGACATTCAGAATTAATTCC</genome_strand>
        <mrna_strand>CTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAA--CACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGGCTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGATGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA............................................................................................................................................................GTTTGTGATGATCGACATTCAGAATTAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299705" ref_strand="+" ref_description="SGN-E299705 [cLEW-1-I14]">
      <seq>tttattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtagaaaagagaaagttaagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattggggctgtcttggttgttttcctttacatgtattttggatccaagagcggtggtgagtctgctcttgagtatggcagccgttctttgaggaaattgggatcgtcttatttgggtggggatgataactctgatctcagcagcaggcaagaggagaagtttggactggaagatggtgatggtggcatcgtccctaagagttttccagtttgtgatgatcgacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80959" stop="78411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80659" g_stop="80514" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="78887" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="577" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78730" g_stop="78711" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="597" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E299705" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80659" e_stop="80514"/>
          <exon e_start="79319" e_stop="78887"/>
          <exon e_start="78730" e_stop="78711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCAGTAAGTCAGTCTTTTTCCATTTCACAGCCCAATGTTATGTCACAAGGCTCTCCTCCAACCGCCAAGAGTGGTTAATTGGAAGAAAGGATGAGTTGCTGCATTTTGGTTGTTTCCTTTGTTTACCTTCTTAATTTTGTACTGGTCTTTCATTTGAAGGTTTGTGATGATCGACATTC</genome_strand>
        <mrna_strand>TTTATTCTCTGCAGAAA-A-ACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGGCTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA............................................................................................................................................................GTTTGTGATGATCGACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214458" ref_strand="+" ref_description="SGN-E214458 [cLEC-77-L3]">
      <seq>ctctctgtccctccatttattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtagaaaagagaaagttaagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattggggctgtcttggttgttttcctttacatgtattttggatccaagagcggtggtgagtctgctcttgagtatggcagccgttctttgaggaaattgggatcgtcttatttgggtggggatgataactctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80974" stop="78657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80674" g_stop="80514" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="78957" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="522" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E214458" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80674" e_stop="80514"/>
          <exon e_start="79319" e_stop="78957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCT</genome_strand>
        <mrna_strand>CTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAA--CACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGGCTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205378" ref_strand="+" ref_description="SGN-E205378 [cLEC-25-N22]">
      <seq>cactctctctgtccctccatgtattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtacaaaagagaaagtttagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80978" stop="78788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80678" g_stop="80514" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="79087" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="396" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E205378" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80678" e_stop="80514"/>
          <exon e_start="79319" e_stop="79087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGA</genome_strand>
        <mrna_strand>CACTCTCTCTGTCCCTCCATGTATTCTCTGCAGAAAA--ACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTACAAAAGAGAAAGTTTAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717830" ref_strand="+" ref_description="SGN-E717830 [FC02DE04]">
      <seq>gatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcatttgacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtaaacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93172" stop="95669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93471" g_stop="93855" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="651" r_length="266" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95369" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="880" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E717830" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93471" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTG</genome_strand>
        <mrna_strand>GATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTTGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAAACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719397" ref_strand="+" ref_description="SGN-E719397 [FC07DA01]">
      <seq>gatcaacaacaaagaacattaaaaaaaattatataaaaaaaaatgggttntaagtccccctttaaaagttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagcctatatggaagaagaggctcacaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93172" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93471" g_stop="93855" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="651" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="831" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E719397" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93471" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>GATCAACAACAAAGAACATTAAAAAAAATTATATAAAAAAAAATGGGTTNTAAGTCCCCCTTTAAAAGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCTATATGGAAGAAGAGGCTCACAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722896" ref_strand="+" ref_description="SGN-E722896 [FC18CG04]">
      <seq>gatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacaaagtcgccacttgatcgtagggcacagtcaggaaatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcaatcctcaagttctctctgaggcattcaatgtaaacgtggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93172" stop="95615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93471" g_stop="93855" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="651" r_length="266" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95315" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="826" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722896" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93471" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGG</genome_strand>
        <mrna_strand>GATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAAAGTCGCCACTTGATCGTAGGGCACAGTCAGGAAATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCAATCCTCAAGTTCTCTCTGAGGCATTCAATGTAAACGTGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722275" ref_strand="+" ref_description="SGN-E722275 [FC16DB04]">
      <seq>cccatggggatccgactgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaacttcggttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93170" stop="95685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="402" r_length="384" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="668" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95385" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="913" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722275" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCT</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAAACTTCGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720276" ref_strand="+" ref_description="SGN-E720276 [FC10BD01]">
      <seq>cccatggggatccgatgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctncagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93170" stop="95669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="401" r_length="384" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="667" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95369" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="896" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E720276" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTNCAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718311" ref_strand="+" ref_description="SGN-E718311 [FC04BC01]">
      <seq>aatcggccgaattgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="398" r_length="384" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="664" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95303" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="827" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E718311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722414" ref_strand="+" ref_description="SGN-E722414 [FC17AH02]">
      <seq>aatcggccgaattgatcaacaacaaagaagactatttaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="398" r_length="384" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="664" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95291" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="815" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722414" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGACTATTTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720678" ref_strand="+" ref_description="SGN-E720678 [FC11CA09]">
      <seq>aatcggccgaattgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="398" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="664" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95291" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="815" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E720678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722571" ref_strand="+" ref_description="SGN-E722571 [FC17CF09]">
      <seq>aatcggccgaattgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="398" r_length="384" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="664" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95269" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="793" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGA</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717759" ref_strand="+" ref_description="SGN-E717759 [FC02CF07]">
      <seq>ggcgattggcggccaaatcggccgaattgatcaacaacaaagaacagtaattaaaattatataaaaaaaaatggcttctaagtcctctttccaatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaaaaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacaaagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagaacacaagagacaactagccaatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="413" r_length="384" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="679" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="763" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E717759" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</genome_strand>
        <mrna_strand>ATCAACAACAAAGAACAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCAATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAAAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAAAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGAACACAAGAGACAACTAGCCAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720659" ref_strand="+" ref_description="SGN-E720659 [FC11BG11]">
      <seq>ccaaatcggccgaattgatcaacaacaaagaacagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="401" r_length="384" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="667" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="751" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E720659" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</genome_strand>
        <mrna_strand>ATCAACAACAAAGAACAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721432" ref_strand="+" ref_description="SGN-E721432 [FC13DE11]">
      <seq>cgattggcggccaatcggccgaattgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacaaagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="410" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="676" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95222" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="758" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E721432" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAAAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724050" ref_strand="+" ref_description="SGN-E724050 [FC22DF06]">
      <seq>aatcggccgaattgatcaacaacaaagaacattaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccaaatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaaaaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaccgtggtgtacaacaccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="398" r_length="384" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="664" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95186" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="710" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E724050" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAG</genome_strand>
        <mrna_strand>ATCAACAACAAAGAACATTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAAATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAAAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCACCGTGGTGTACAACACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722297" ref_strand="+" ref_description="SGN-E722297 [FC16DD08]">
      <seq>gaacaacaaagaagagcatttaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtaaacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93175" stop="95667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93474" g_stop="93855" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="648" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95367" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="875" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722297" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93474" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGC</genome_strand>
        <mrna_strand>GAACAACAAAGAAGAGCATTTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAAACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718484" ref_strand="+" ref_description="SGN-E718484 [FC04DC05]">
      <seq>gaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccaaatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93175" stop="95616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93474" g_stop="93855" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="648" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95316" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="824" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E718484" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93474" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGT</genome_strand>
        <mrna_strand>GAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAAATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719988" ref_strand="+" ref_description="SGN-E719988 [FC09CA02]">
      <seq>aatcggccgaattgatcacaacaaagaacagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93855" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="397" r_length="378" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="663" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95318" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="841" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E719988" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTA</genome_strand>
        <mrna_strand>AACAAAGAACAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718960" ref_strand="+" ref_description="SGN-E718960 [FC06BD07]">
      <seq>aatcggccgaattgatcacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93855" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="397" r_length="378" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="663" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95302" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="825" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E718960" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAAT</genome_strand>
        <mrna_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722503" ref_strand="+" ref_description="SGN-E722503 [FC17BH07]">
      <seq>aatcggccgaattgatcacaacaaagaagcgtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93855" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="397" r_length="378" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="663" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95300" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="823" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722503" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCA</genome_strand>
        <mrna_strand>AACAAAGAAGCGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719175" ref_strand="+" ref_description="SGN-E719175 [FC06DH11]">
      <seq>gggcgattggcggccaatcggccgaattgatcacaacaaagaacagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93855" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="412" r_length="378" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="678" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="762" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E719175" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</genome_strand>
        <mrna_strand>AACAAAGAACAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719358" ref_strand="+" ref_description="SGN-E719358 [FC07CE01]">
      <seq>aatcggccgaattgaaaacaaagaagactatttaaaattatataaaaaaaaatggcttctaagtcctccccccaaagttttttcttttgttttcttggtggttgccagatcagcttccctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagataaagcgtttgaacgctcaaaaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggaattcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtccccccttgatcgtagggcacagtcaggagatagagggcagaaatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaaaaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93173" stop="95107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93855" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="394" r_length="378" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94807" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="650" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E719358" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93855"/>
          <exon e_start="94552" e_stop="94807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCT</genome_strand>
        <mrna_strand>AACAAAGAAGACTATTTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCCCCCCAAAGTTTTTTCTTTTGTTTTCTTGGTGGTTGCCAGATCAGCTTCCCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAAAGCGTTTGAACGCTCAAAAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAATTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCCCCCCTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAAATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAAAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705569" ref_strand="+" ref_description="SGN-E705569 [FA27CB03]">
      <seq>agaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93183" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93483" g_stop="93855" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="639" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="819" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705569" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93483" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>AGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705178" ref_strand="+" ref_description="SGN-E705178 [FA26BE12]">
      <seq>gaggcagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaagggaggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93184" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93484" g_stop="93855" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="639" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="819" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705178" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93484" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAG-AGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>GAGGCAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGGAGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719383" ref_strand="+" ref_description="SGN-E719383 [FC07CG09]">
      <seq>gaagagtaattaaaattatataaaaaaaccgaaaaaaaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccaaaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93184" stop="95503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93484" g_stop="93855" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="637" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="700" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E719383" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93484" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAA</genome_strand>
        <mrna_strand>GAAGAGTAATTAAAATTATAT-AAAAAAACCGAAAAAAAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAAAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697531" ref_strand="+" ref_description="SGN-E697531 [FA03BA09]">
      <seq>cggagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93187" stop="95497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93485" g_stop="93855" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="637" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95197" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="694" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E697531" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93485" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGA</genome_strand>
        <mrna_strand>CGGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707798" ref_strand="+" ref_description="SGN-E707798 [FA34AA07]">
      <seq>catttattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaacttcggttcctcctccggaggagaaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93188" stop="95706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93487" g_stop="93855" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="635" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95406" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="899" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707798" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93487" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGA</genome_strand>
        <mrna_strand>CATTTATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAA-CTTCGGTTCCTCCT-CCGGAGGAGAAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708713" ref_strand="+" ref_description="SGN-E708713 [FA36CC08]">
      <seq>gagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93187" stop="95666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93487" g_stop="93855" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="635" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95366" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="861" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708713" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93487" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGG</genome_strand>
        <mrna_strand>GAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553744" ref_strand="+" ref_description="SGN-E553744 [cTSC-2-B20]">
      <seq>gagtaattaaaattatataaaagaaaatggcttctaagtcctctttccgatgttttttcttttgttttcgtgttatttgccacatcagcttcgctcaaatttttgagcgacaactgatctggcaaagggtgctacatcaacatcatcatcgggcacttatgtctaaaaccaagtgcccgatagagcgtttgagcgctcaagaaccaaaccgtacgtttgagtcctaggcggatgttgttgagttctgggatgctaccctacaactgttggagtgcgccggaattcaagccgttagggatgaaatccggcgcaacgggcttttgttgccttagtatagcaacactccccaactcatctatattgtcctaggaagtggagttcattcaacaatattcccaggctgcgccaagacttttgaaacaaagtcgccgcttgatcgtacgggacattcaagatatagagggcagacatcactctatcgtcaccataaagttaagcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatactttgatggtgaagaacctattattagtgtctcacttattgacgcttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaaaaggctcagaacaagagaaaggagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93187" stop="95556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93487" g_stop="93855" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="635" r_length="266" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95256" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="751" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E553744" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93487" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAA</genome_strand>
        <mrna_strand>GAGTAATTAAAATTATATAAAAGAAAATGGCTTCTAAGTCCTCTTTCCGATGTTTTTTCTTTTGTTTTCGTGTTATTTGCCACATCAGCTTCGCTCAAATTTTTGAGCGACAACTGATCTGGCAAAGGGTGCTACATCAACATCATCATCGGGCACTTATGTCTAAAACCAAGTGCCCGATAGAGCGTTTGAGCGCTCAAGAACCAAACCGTACGTTTGAGTCCTAGGCGGATGTTGTTGAGTTCTGGGATGCTACCCTACAACTGTTGGAGTGCGCCGGAATTCAAGCCGTTAGGGATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTAGTATAGCAACACTCCCCAACTCATCTATATTGTCCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCAAGACTTTTGAAACAAAGTCGCCGCTTGATCGTACGGGACATTCAAGATATAGAGGGCAGACATCACTCTATCGTCACCATAAAGTTAAGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACTTTGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACGCTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAAAGGCTCAGAACAAGAGAAAGGAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697666" ref_strand="+" ref_description="SGN-E697666 [FA03DA06]">
      <seq>cggtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattacgaagacaacaagagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93189" stop="95510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93487" g_stop="93855" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="635" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95210" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="705" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E697666" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93487" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAA</genome_strand>
        <mrna_strand>CGGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTACGAAGACAACAAGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701988" ref_strand="+" ref_description="SGN-E701988 [FA17CA05]">
      <seq>agtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatcccaggagaggcccccgagaggggtattattgtcctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93188" stop="95667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93488" g_stop="93855" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="634" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95367" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="861" r_length="227" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701988" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93488" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGC</genome_strand>
        <mrna_strand>AGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCCAGGAGAGGCCCCCGAGAGGGGTATTATTGTCCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704877" ref_strand="+" ref_description="SGN-E704877 [FA25CB02]">
      <seq>agtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcctcctcgctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaggagacaactagccaatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93188" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93488" g_stop="93855" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="634" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="718" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704877" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93488" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</genome_strand>
        <mrna_strand>AGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCCTCCTCGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAGGAGACAACTAGCCAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702179" ref_strand="+" ref_description="SGN-E702179 [FA18AA11]">
      <seq>acttataattatataaaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93193" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93491" g_stop="93855" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="632" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="812" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702179" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93491" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAATTATAT-AAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>ACTTATAATTATATAAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706493" ref_strand="+" ref_description="SGN-E706493 [FA30AE02]">
      <seq>aattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcaaaacaagagaaaggagggaacatgttaagtgggattcgatccctcaagttctctctgaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93191" stop="95597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93491" g_stop="93855" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="631" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95297" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="790" r_length="159" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706493" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93491" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGT-GGATTCGAT-CCTCAAGTTCTCTCTGAGGCAT</genome_strand>
        <mrna_strand>AATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAAAACAAGAGAAAGGAGGGAACATGTTAAGTGGGATTCGATCCCTCAAGTTCTCTCTGAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704654" ref_strand="+" ref_description="SGN-E704654 [FA24DF02]">
      <seq>attaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93192" stop="95605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93492" g_stop="93855" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="630" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95306" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="796" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704654" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93492" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAG</genome_strand>
        <mrna_strand>ATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704904" ref_strand="+" ref_description="SGN-E704904 [FA25CD08]">
      <seq>attaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccacatcaacctgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatcttaagtggattcgatcctcaagttctctctgaggcattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93192" stop="95602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93492" g_stop="93855" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="631" r_length="267" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95302" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="793" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704904" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93492" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCA-ATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAAT</genome_strand>
        <mrna_strand>ATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCACATCAACCTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATCTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708365" ref_strand="+" ref_description="SGN-E708365 [FA35CC07]">
      <seq>ctattattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93194" stop="95681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93493" g_stop="93855" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="629" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95381" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="870" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93493" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGT</genome_strand>
        <mrna_strand>CTATTATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710040" ref_strand="+" ref_description="SGN-E710040 [FA54AB05]">
      <seq>cgatttttatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93199" stop="95591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93493" g_stop="93855" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="629" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95291" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="780" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E710040" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93493" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</genome_strand>
        <mrna_strand>CGATTTTTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708098" ref_strand="+" ref_description="SGN-E708098 [FA34DD07]">
      <seq>caatattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93195" stop="95658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93494" g_stop="93855" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="628" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95358" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="846" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708098" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93494" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTAT</genome_strand>
        <mrna_strand>CAATATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707806" ref_strand="+" ref_description="SGN-E707806 [FA34AB04]">
      <seq>aaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccanggagaggcccccgagaggggtattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93195" stop="95660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93495" g_stop="93855" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="627" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95360" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="847" r_length="220" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707806" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93495" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTG</genome_strand>
        <mrna_strand>AAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCANGGAGAGGCCCCCGAGAGGGGTATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702157" ref_strand="+" ref_description="SGN-E702157 [FA17DG12]">
      <seq>aaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93195" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93495" g_stop="93855" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="627" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="807" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702157" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93495" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>AAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698002" ref_strand="+" ref_description="SGN-E698002 [FA04DG12]">
      <seq>cgatttatataaaaaaaaatgccttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93197" stop="95596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93495" g_stop="93855" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="627" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95296" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="783" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698002" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93495" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCA</genome_strand>
        <mrna_strand>CGATTTATATAAAAAAAAATGCCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708339" ref_strand="+" ref_description="SGN-E708339 [FA35CA03]">
      <seq>caatattataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93197" stop="95679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93496" g_stop="93855" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="626" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95379" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="865" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708339" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93496" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCG</genome_strand>
        <mrna_strand>CAATATTATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701454" ref_strand="+" ref_description="SGN-E701454 [FA16AB03]">
      <seq>accttatataaaaaaaaatggcttctaagtcctctttcctatgtcttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttataccaaagatccaggaggaggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93199" stop="95642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93496" g_stop="93855" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="626" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95342" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="828" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701454" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93496" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCC</genome_strand>
        <mrna_strand>ACCTTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTCTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACCAAAGATCCAGGAGGAGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555352" ref_strand="+" ref_description="SGN-E555352 [cTSC-2-B13]">
      <seq>aaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93196" stop="95630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93496" g_stop="93855" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="626" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95330" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="816" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93496" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCC</genome_strand>
        <mrna_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703823" ref_strand="+" ref_description="SGN-E703823 [FA22CC06]">
      <seq>aaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcaatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93196" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93496" g_stop="93855" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="626" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="806" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703823" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93496" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCAATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698254" ref_strand="+" ref_description="SGN-E698254 [FA05DA01]">
      <seq>atattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93198" stop="95464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93496" g_stop="93855" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="626" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95164" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="650" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698254" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93496" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCT</genome_strand>
        <mrna_strand>ATATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722041" ref_strand="+" ref_description="SGN-E722041 [FC16AB02]">
      <seq>attatataaaaaaaaagggcttctaagtcccccttccaatgttttttcttttgttttcttgttgtttgccaaatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccaaggcgggtgttgttgagttctgggatgctacccaaaaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacaaagtcgccacttgatcgtagggcacagtcaggagatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93198" stop="95494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93498" g_stop="93855" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="624" r_length="266" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95194" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="678" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E722041" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93498" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGA</genome_strand>
        <mrna_strand>ATTATATAAAAAAAAAGGGCTTCTAAGTCCCCCTTCCAATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAAATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCAAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAAAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAAAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724414" ref_strand="+" ref_description="SGN-E724414 [FC24AB11]">
      <seq>gattggcggccaaatcggccgaattgatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccaaatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcaaagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93197" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93501" g_stop="93855" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="381" r_length="355" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="647" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="731" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E724414" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93501" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</genome_strand>
        <mrna_strand>ATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAAATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAAAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701227" ref_strand="+" ref_description="SGN-E701227 [FA15BE08]">
      <seq>aaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93207" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93507" g_stop="93855" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="615" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95320" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="795" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93507" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</genome_strand>
        <mrna_strand>AAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554613" ref_strand="+" ref_description="SGN-E554613 [cTSC-4-N23]">
      <seq>aaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93211" stop="95644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93511" g_stop="93855" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="611" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95344" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="815" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93511" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCC</genome_strand>
        <mrna_strand>AAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706516" ref_strand="+" ref_description="SGN-E706516 [FA30AG05]">
      <seq>ttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93218" stop="95476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93518" g_stop="93855" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="604" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95176" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="640" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706516" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93518" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTA</genome_strand>
        <mrna_strand>TTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703511" ref_strand="+" ref_description="SGN-E703511 [FA21CH02]">
      <seq>cctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93226" stop="95691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93526" g_stop="93855" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="596" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95391" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="847" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93526" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCC</genome_strand>
        <mrna_strand>CCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708068" ref_strand="+" ref_description="SGN-E708068 [FA34DB01]">
      <seq>ctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93229" stop="95722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93529" g_stop="93855" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="593" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95422" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="875" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708068" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93529" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGA</genome_strand>
        <mrna_strand>CTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703135" ref_strand="+" ref_description="SGN-E703135 [FA20CF05]">
      <seq>gttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccangaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93238" stop="95711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93538" g_stop="93855" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="584" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95411" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="855" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703135" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93538" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAG</genome_strand>
        <mrna_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCANGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704578" ref_strand="+" ref_description="SGN-E704578 [FA24CG02]">
      <seq>gttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93238" stop="95633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93538" g_stop="93855" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="584" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95333" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="777" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704578" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93538" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGG</genome_strand>
        <mrna_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704678" ref_strand="+" ref_description="SGN-E704678 [FA24DH02]">
      <seq>gttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagacgaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93238" stop="95628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93538" g_stop="93855" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="584" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95328" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="772" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93538" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGAT</genome_strand>
        <mrna_strand>GTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGACGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724006" ref_strand="+" ref_description="SGN-E724006 [FC22DB03]">
      <seq>tttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccaaatagagcgtttgaacgctcaaaaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaaaaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccaagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagaaatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacccattattagtgtctcacttattgacccttctaacgttgccaatcaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93240" stop="95105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93540" g_stop="93855" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94805" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="570" r_length="254" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E724006" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93540" e_stop="93855"/>
          <exon e_start="94552" e_stop="94805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGAC</genome_strand>
        <mrna_strand>TTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAAATAGAGCGTTTGAACGCTCAAAAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAAAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCAAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAAATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCCATTATTAGTGTCTCACTTATTGACCCTTCTAACGTTGCCAATCAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710022" ref_strand="+" ref_description="SGN-E710022 [FA53DH09]">
      <seq>ttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcacaacaagagaacggagggaacatgttaagtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93243" stop="95571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93543" g_stop="93855" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="579" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95271" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="710" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E710022" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93543" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATT</genome_strand>
        <mrna_strand>TTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCACAACAAGAGAACGGAGGGAACATGTTAAGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705512" ref_strand="+" ref_description="SGN-E705512 [FA27BE01]">
      <seq>tttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcagcccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcntagtagaagaggattccctcttaatggtttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93247" stop="95764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93547" g_stop="93855" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="575" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95464" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="899" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705512" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93547" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAA</genome_strand>
        <mrna_strand>TTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGCCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCNTAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703404" ref_strand="+" ref_description="SGN-E703404 [FA21BF04]">
      <seq>gttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93250" stop="95714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93550" g_stop="93855" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="572" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95414" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="846" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703404" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93550" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAG</genome_strand>
        <mrna_strand>GTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710942" ref_strand="+" ref_description="SGN-E710942 [FA57BH06]">
      <seq>ttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattccacaatattcccaggctgcgccgagacatttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93253" stop="94902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93553" g_stop="93855" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94602" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="354" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E710942" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93553" e_stop="93855"/>
          <exon e_start="94552" e_stop="94602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAA</genome_strand>
        <mrna_strand>TTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCCACAATATTCCCAGGCTGCGCCGAGACATTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705486" ref_strand="+" ref_description="SGN-E705486 [FA27BB08]">
      <seq>atcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccgggaggagaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcaacatgaagttgagggagaacattggccatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93270" stop="95810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93570" g_stop="93855" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="552" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95510" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="922" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93570" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCC-GGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTA</genome_strand>
        <mrna_strand>ATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGGAGGAG-AAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCAACATGAAGTTGAGGGAGAACATTGGCCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698400" ref_strand="+" ref_description="SGN-E698400 [FA06AG08]">
      <seq>ccgctatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaaacatgttaagtggattcgatcctcaagttctctctgaggcattccatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93303" stop="95664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93597" g_stop="93855" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="524" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95364" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="749" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698400" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93597" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGG-AACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCT</genome_strand>
        <mrna_strand>CCGC-TATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCCATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555406" ref_strand="+" ref_description="SGN-E555406 [cTSC-2-O5]">
      <seq>ggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93313" stop="95730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93613" g_stop="93855" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="509" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95430" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="799" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93613" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCA</genome_strand>
        <mrna_strand>GGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702676" ref_strand="+" ref_description="SGN-E702676 [FA19BE09]">
      <seq>caagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgttcttaactggctccagctcagcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93384" stop="95903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93684" g_stop="93855" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="438" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95603" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="901" r_length="463" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702676" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93684" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTG</genome_strand>
        <mrna_strand>CAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTTCTTAACTGGCTCCAGCTCAGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707881" ref_strand="+" ref_description="SGN-E707881 [FA34AH11]">
      <seq>ctatgtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93398" stop="95833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93697" g_stop="93855" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="425" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95533" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="818" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707881" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93697" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCA</genome_strand>
        <mrna_strand>CTATGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698483" ref_strand="+" ref_description="SGN-E698483 [FA06CA07]">
      <seq>ccggattccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctccctcccggaggagaaagaagaagaacaagaagaaagagaatggcatagtacaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93405" stop="95793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93702" g_stop="93855" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="420" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95493" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="774" r_length="354" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698483" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93702" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCT-CCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGA</genome_strand>
        <mrna_strand>CCGGATTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCCTCCCGGAGGAGAAAGAAGAAGAACAAGAAGAAAGAGAATGGCATAGTACAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706628" ref_strand="+" ref_description="SGN-E706628 [FA30CA02]">
      <seq>gtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93407" stop="95923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93707" g_stop="93855" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="415" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="898" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95923" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="905" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706628" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93707" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTA</genome_strand>
        <mrna_strand>GTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698876" ref_strand="+" ref_description="SGN-E698876 [FA07DE02]">
      <seq>gttgttgagttctgggatgctacccaagaacagtttgagtgtgccggacttcacgccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagcggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacataccatgatggtgaagaacctattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93420" stop="95060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93720" g_stop="93855" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94760" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="345" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698876" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93720" e_stop="93855"/>
          <exon e_start="94552" e_stop="94760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATT</genome_strand>
        <mrna_strand>GTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGACTTCACGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACCATGATGGTGAAGAACCTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709076" ref_strand="+" ref_description="SGN-E709076 [FA42CE06]">
      <seq>cggttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93423" stop="95889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93721" g_stop="93855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="401" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95589" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="850" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709076" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93721" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCT</genome_strand>
        <mrna_strand>CGGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555799" ref_strand="+" ref_description="SGN-E555799 [cTSD-1-H12]">
      <seq>agtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaagtaccctctacaacaatgctatagtggcaccacattggaacttgacgctcactcaatcatctatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93451" stop="96272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93751" g_stop="93855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="371" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="854" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95972" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="909" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93751" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCAT</genome_strand>
        <mrna_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAAGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTG-ACGCTCACTCAATCATCTATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554965" ref_strand="+" ref_description="SGN-E554965 [cTSC-5-P3]">
      <seq>agtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtccataacaacagtctccctgtccttaactggctccagctcagcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93451" stop="95904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93751" g_stop="93855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="371" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95604" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="835" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554965" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93751" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGA</genome_strand>
        <mrna_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCCATAACAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E557160" ref_strand="+" ref_description="SGN-E557160 [cTSD-4-O3]">
      <seq>agtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93451" stop="95798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93751" g_stop="93855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="371" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95498" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="729" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E557160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93751" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACA</genome_strand>
        <mrna_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555578" ref_strand="+" ref_description="SGN-E555578 [cTSC-5-K4]">
      <seq>agtttgagtgcgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtctccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggagaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcgacgtggtgtacaacaacaagtattaggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93451" stop="95497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93751" g_stop="93855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="371" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95197" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="428" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555578" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93751" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGA</genome_strand>
        <mrna_strand>AGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCTCCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGAGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCGACGTGGTGTACAACAACAAGTATTAGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709230" ref_strand="+" ref_description="SGN-E709230 [FA51AC12]">
      <seq>cgttgagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93466" stop="95845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93761" g_stop="93855" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="360" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95545" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="765" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709230" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93761" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGT</genome_strand>
        <mrna_strand>CGTT-GAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708597" ref_strand="+" ref_description="SGN-E708597 [FA36AG11]">
      <seq>cggtgttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93464" stop="95903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93764" g_stop="93855" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="358" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95603" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="821" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708597" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93764" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTG</genome_strand>
        <mrna_strand>CGGTGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702384" ref_strand="+" ref_description="SGN-E702384 [FA18CC08]">
      <seq>agttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattgggaacttgaacgctcactcaatcatctatatcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93467" stop="96274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93767" g_stop="93855" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="355" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="838" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95974" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="839" r_stop="897" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702384" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93767" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATT-GGAACTTGAACGCTCACTCAATCATCTATATCATCC</genome_strand>
        <mrna_strand>AGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGGAACTTGAACGCTCACTCAATCATCTATATCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702682" ref_strand="+" ref_description="SGN-E702682 [FA19BF04]">
      <seq>aggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93472" stop="96273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93772" g_stop="93855" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="350" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="833" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="890" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702682" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93772" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATC</genome_strand>
        <mrna_strand>AGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705767" ref_strand="+" ref_description="SGN-E705767 [FA28AD02]">
      <seq>gccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93474" stop="95923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93774" g_stop="93855" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="346" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="829" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95923" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="836" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705767" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93774" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTA</genome_strand>
        <mrna_strand>GCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCG-C-CTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556889" ref_strand="+" ref_description="SGN-E556889 [cTSD-4-O24]">
      <seq>aatccggcgcaacgggcttttgatgccttactatagcaacactccccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccattctacttgacctcacattcaggaaattcttcctagctggaaatcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93488" stop="95466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93788" g_stop="93855" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="334" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95166" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="360" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556889" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93788" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCA</genome_strand>
        <mrna_strand>AATCCGGCGCAACGGGCTTTTGATGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCATTCTACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703545" ref_strand="+" ref_description="SGN-E703545 [FA21DC02]">
      <seq>gcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtgggaagcggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93494" stop="96287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93794" g_stop="93855" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="328" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="811" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95987" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="883" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93794" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGT-GGAAGCGGTCG</genome_strand>
        <mrna_strand>GCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGGAAGCGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706918" ref_strand="+" ref_description="SGN-E706918 [FA31CB12]">
      <seq>ttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93510" stop="95923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93810" g_stop="93855" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="312" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="795" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95923" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="802" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93810" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTA</genome_strand>
        <mrna_strand>TTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706922" ref_strand="+" ref_description="SGN-E706922 [FA31CC05]">
      <seq>ttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccctcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacaggtctccctgtccttaactggctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93510" stop="95894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93810" g_stop="93855" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="312" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95594" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="767" r_length="455" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706922" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93810" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACA-GTCTCCCTGTCCTTAACTGGCTCCAGC</genome_strand>
        <mrna_strand>TTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCCTCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGGTCTCCCTGTCCTTAACTGGCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710959" ref_strand="+" ref_description="SGN-E710959 [FA57CB03]">
      <seq>ctccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93529" stop="96266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93829" g_stop="93855" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="293" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="776" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="95966" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="826" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E710959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93829" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTA</genome_strand>
        <mrna_strand>CTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553505" ref_strand="+" ref_description="SGN-E553505 [cTSC-1-F15]">
      <seq>ccaactcatctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93533" stop="96355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93833" g_stop="93855" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="289" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="772" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="96055" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="911" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E553505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93833" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCG</genome_strand>
        <mrna_strand>CCAACTCATCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708697" ref_strand="+" ref_description="SGN-E708697 [FA36CB04]">
      <seq>caattcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtaggggacgcgggnaagtccgtgtttgatgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93534" stop="96333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93834" g_stop="93855" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="288" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="771" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="96033" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="888" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708697" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93834" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAA</genome_strand>
        <mrna_strand>CAATTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGGACGCGGGNAAGTCCGTGTTTGATGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700224" ref_strand="+" ref_description="SGN-E700224 [FA12CB02]">
      <seq>cttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctcccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaattggtagggaacgcgggaagtccgtgtttgatgatcaagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93539" stop="96338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93839" g_stop="93855" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="283" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="767" r_length="484" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="96038" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="888" r_length="121" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E700224" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93839" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCT-CCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAG</genome_strand>
        <mrna_strand>CTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAATTGGTAGGGAACGCGGG-AAGTCCGTGTTTGATGATCAAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710555" ref_strand="+" ref_description="SGN-E710555 [FA55DB07]">
      <seq>cagtaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccccgcccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94250" stop="96268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94549" g_stop="94817" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="752" r_length="483" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="95968" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="804" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E710555" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94549" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATA</genome_strand>
        <mrna_strand>CAGTAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCCGCCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702302" ref_strand="+" ref_description="SGN-E702302 [FA18BD08]">
      <seq>gtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggtttccagtggtagggaacgcgggaaagtccgtgtttgatgatncagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94250" stop="96386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="273" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="756" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96085" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="925" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E702302" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGA</genome_strand>
        <mrna_strand>GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTTCCAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATNCAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706304" ref_strand="+" ref_description="SGN-E706304 [FA29CD03]">
      <seq>gtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtgggaagcggtcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94250" stop="96289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="273" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="756" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="95989" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="830" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706304" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGT-GGAAGCGGTCGGT</genome_strand>
        <mrna_strand>GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGGAAGCGGTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698697" ref_strand="+" ref_description="SGN-E698697 [FA07BC04]">
      <seq>cccgttttattcaccaatattcccaggctgcgccgagacatttccaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattccggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagtcaatatggaagaagaggctcagaacaagagaaaggagggaacatgttcagtggattccgatcctcaagttctctctgaggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94261" stop="95598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94556" g_stop="94817" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95298" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="421" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E698697" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94556" e_stop="94817"/>
          <exon e_start="95141" e_stop="95298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATT-CGATCCTCAAGTTCTCTCTGAGGCATT</genome_strand>
        <mrna_strand>CCCGTTTTATTCACCAATATTCCCAGGCTGCGCCGAGACATTTCCAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCCGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGTCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTCAGTGGATTCCGATCCTCAAGTTCTCTCTGAGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706047" ref_strand="+" ref_description="SGN-E706047 [FA28DD10]">
      <seq>gttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcacttcatcatctatatcatccgtggaagcggtcggttcccagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94260" stop="96374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94560" g_stop="94817" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="741" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96074" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="899" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706047" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94560" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGC</genome_strand>
        <mrna_strand>GTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTTCATCATCTATATCATCCGTGGAAGCGGTCGGTTCCCAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708080" ref_strand="+" ref_description="SGN-E708080 [FA34DC01]">
      <seq>cattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgccctcaaactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94263" stop="96374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94563" g_stop="94817" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="738" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96074" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="896" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708080" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94563" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGC</genome_strand>
        <mrna_strand>CATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCCTCAAACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554572" ref_strand="+" ref_description="SGN-E554572 [cTSC-4-L22]">
      <seq>caacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94267" stop="96285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94567" g_stop="94817" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="734" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="95985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="803" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94567" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGT</genome_strand>
        <mrna_strand>CAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554877" ref_strand="+" ref_description="SGN-E554877 [cTSC-5-L13]">
      <seq>gcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcgggcgggagatattcttgcattgcctgctggagttactcattgaacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtccatagcaacagtctccctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94285" stop="95878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94585" g_stop="94817" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95578" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="671" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554877" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94585" e_stop="94817"/>
          <exon e_start="95141" e_stop="95578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTC</genome_strand>
        <mrna_strand>GCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGAACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCCATAGCAACAGTCTCCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720475" ref_strand="+" ref_description="SGN-E720475 [FC10DF12]">
      <seq>gcttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94314" stop="95495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94613" g_stop="94817" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95195" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="260" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E720475" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94613" e_stop="94817"/>
          <exon e_start="95141" e_stop="95195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAA</genome_strand>
        <mrna_strand>GCTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700366" ref_strand="+" ref_description="SGN-E700366 [FA12DF10]">
      <seq>cttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggtgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaactttgctatagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94314" stop="96383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94614" g_stop="94817" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="687" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96084" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="854" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E700366" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94614" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAG</genome_strand>
        <mrna_strand>CTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGTGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTC-AAACTTTGCTATAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699386" ref_strand="+" ref_description="SGN-E699386 [FA09DE04]">
      <seq>gggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94324" stop="95700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94624" g_stop="94817" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95400" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="454" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E699386" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94624" e_stop="94817"/>
          <exon e_start="95141" e_stop="95400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAA</genome_strand>
        <mrna_strand>GGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705399" ref_strand="+" ref_description="SGN-E705399 [FA27AB08]">
      <seq>atcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccnatgacaacgcgatgattagtccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94352" stop="96452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94652" g_stop="94817" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="649" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96152" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="885" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705399" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94652" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTT</genome_strand>
        <mrna_strand>ATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCNATGACAACGCGATGATTAGTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705803" ref_strand="+" ref_description="SGN-E705803 [FA28AG05]">
      <seq>cgctcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaactttgctatagtgaagaaagcaggggagcaagggctcgattacatcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94354" stop="96418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94654" g_stop="94817" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="647" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96118" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="848" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705803" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94654" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTT</genome_strand>
        <mrna_strand>CGCTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTC-AAACTTTGCTATAGTGAAGAAAGCAGGGGAGCAAGGGCTCGATTACATCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706067" ref_strand="+" ref_description="SGN-E706067 [FA28DF09]">
      <seq>cgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgccctcaaactttgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94380" stop="96378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94680" g_stop="94817" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="621" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96078" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="783" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E706067" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94680" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATA</genome_strand>
        <mrna_strand>CGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCCTCAAACTTTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697585" ref_strand="+" ref_description="SGN-E697585 [FA03BH10]">
      <seq>gggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94391" stop="96381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94691" g_stop="94817" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="610" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96081" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="775" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E697585" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94691" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTG</genome_strand>
        <mrna_strand>GGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709408" ref_strand="+" ref_description="SGN-E709408 [FA51DF12]">
      <seq>attgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccacgaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94406" stop="95923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94706" g_stop="94817" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="595" r_length="483" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="95923" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="602" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709408" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94706" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTA</genome_strand>
        <mrna_strand>ATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCACGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708074" ref_strand="+" ref_description="SGN-E708074 [FA34DB07]">
      <seq>ctctttggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaagaagtcctcatgaactcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94423" stop="96509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94723" g_stop="94817" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="578" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96209" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="871" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708074" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94723" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATA</genome_strand>
        <mrna_strand>CTCTTTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAAGAAGTCCTCATGAACTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700645" ref_strand="+" ref_description="SGN-E700645 [FA13CH12]">
      <seq>catacatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94432" stop="96373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94732" g_stop="94817" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="568" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96073" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="725" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E700645" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94732" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTG</genome_strand>
        <mrna_strand>CATAC-ATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707592" ref_strand="+" ref_description="SGN-E707592 [FA33BG07]">
      <seq>ctatatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94438" stop="96520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94733" g_stop="94817" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="567" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96220" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="871" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707592" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94733" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAA</genome_strand>
        <mrna_strand>CTAT-ATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707692" ref_strand="+" ref_description="SGN-E707692 [FA33CH05]">
      <seq>ctataatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94434" stop="96518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94733" g_stop="94817" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="568" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96218" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="870" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707692" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94733" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTC</genome_strand>
        <mrna_strand>CTATAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708321" ref_strand="+" ref_description="SGN-E708321 [FA35BG09]">
      <seq>ccattgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94436" stop="96517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94735" g_stop="94817" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="566" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96217" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="867" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708321" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94735" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTT</genome_strand>
        <mrna_strand>CCATTGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708790" ref_strand="+" ref_description="SGN-E708790 [FA36DB03]">
      <seq>caatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94436" stop="96551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94736" g_stop="94817" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="565" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96251" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="900" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708790" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94736" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAG</genome_strand>
        <mrna_strand>CAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709406" ref_strand="+" ref_description="SGN-E709406 [FA51DD12]">
      <seq>gtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagcagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94444" stop="96273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94744" g_stop="94817" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="557" r_length="483" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="95973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="614" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94744" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="95973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATC</genome_strand>
        <mrna_strand>GTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGCAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704303" ref_strand="+" ref_description="SGN-E704303 [FA23DF11]">
      <seq>gaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttncagaccaatgacaacgcgatgattagtccgttagccggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94446" stop="96460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94746" g_stop="94817" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="555" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96160" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="799" r_length="244" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E704303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94746" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGAC</genome_strand>
        <mrna_strand>GAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTNCAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709001" ref_strand="+" ref_description="SGN-E709001 [FA42BE10]">
      <seq>cctgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtttacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccaaaagaagtcctcatgaactcatacccaatttcaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94475" stop="96524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94773" g_stop="94817" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="529" r_length="484" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96224" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="837" r_length="308" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709001" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94773" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAG-AAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCA</genome_strand>
        <mrna_strand>CCTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTTTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAAAAGAAGTCCTCATGAACTCATACCCAATTTCAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699658" ref_strand="+" ref_description="SGN-E699658 [FA10DD01]">
      <seq>attgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgancacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94473" stop="96517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94773" g_stop="94817" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="528" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96217" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="829" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E699658" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94773" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTT</genome_strand>
        <mrna_strand>ATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGANCACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709750" ref_strand="+" ref_description="SGN-E709750 [FA53AA11]">
      <seq>cgttccaatcgacttgacctcacattcaggaaattcttcctacctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcacaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcgatgtacacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttagtggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcgaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94487" stop="96507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94787" g_stop="94817" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="513" r_length="483" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95917" g_stop="96207" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="804" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709750" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94787" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCA</genome_strand>
        <mrna_strand>CGTT-CCAATCGACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTACCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCACAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCGATGTACACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAGTGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCGAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708627" ref_strand="+" ref_description="SGN-E708627 [FA36BB07]">
      <seq>cattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgcttttcagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94838" stop="96572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95133" g_stop="95623" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96273" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="848" r_length="357" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E708627" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95133" e_stop="95623"/>
          <exon e_start="95917" e_stop="96273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGA</genome_strand>
        <mrna_strand>CATTCAGGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTTCAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703469" ref_strand="+" ref_description="SGN-E703469 [FA21CD03]">
      <seq>ggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccangagctangtctagcaggcaatatgcctaaatgtaaaaaactcaaataatgtagtgtctcaaaatcctatcctttantgtaggatttgttggntgagagataataaaaaatgcctcttgtaaaagggcattgacgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94840" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95139" g_stop="95623" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="970" r_length="485" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="984" polyA_stop="994"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703469" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>974</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95139" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCANGAGCTANGTCTAGCAGGCAATATGCCTAAATGT-AAAAAACTCAAATAATGTAGTGTCTC-AAAATCCTATCCTTTANTGTAGGATTTGTTGGNTGAGAG-ATAAT-AAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707608" ref_strand="+" ref_description="SGN-E707608 [FA33BH11]">
      <seq>ccgtcaagcgacttgacctcacattacagaaattcttcgtagctggaaatcctcaacgtggtgtacaacgacaagtattaggaagacaacaagagacaactagccgatatggaagaagaggctcacaacaagagaaaggagggaacatgttaagtggattcgatcctcaggttctctcggaggcattcaatgtacacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgaaaaccttcggttcctcctcccggaggagaaagaacaagaagaagaagagagagaatggcatagtacaagaggattccctcttaatggtttggaagagactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacaatctccctgtccttaactggctccagctcaacgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgaggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcataactttgctatagtgaagaacgcaggggagcaagggctcgattacatcgctttcgagaccaatgacaacgcgatgattagtccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94829" stop="96454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="512" r_length="483" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96154" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="750" r_length="238" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E707608" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAG</genome_strand>
        <mrna_strand>AAATTCTTCGTAGCTGGAAATCCTCAACGTGGTGTACAACGACAAGTATTAGGAAGACAACAAGAGACAACTAGCCGATATGGAAGAAGAGGCTCACAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAGGTTCTCTCGGAGGCATTCAATGTACACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAAAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAACAAGAAGAAGAAGAGAGAGAATGGCATAGTACAAGAGGATTCCCTCTTAATGGTTTGGAAGAGACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAATCTCCCTGTCCTTAACTGGCTCCAGCTCAACGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGAGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCATAACTTTGCTATAGTGAAGAACGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCGAGACCAATGACAACGCGATGATTAGTCCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701032" ref_strand="+" ref_description="SGN-E701032 [FA14DD07]">
      <seq>attcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgccctaatgtaaaaaaactcaaaatatgtagtgtctcaaaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94843" stop="96646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95143" g_stop="95623" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96346" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="911" r_length="430" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701032" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95143" e_stop="95623"/>
          <exon e_start="95917" e_stop="96346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCT</genome_strand>
        <mrna_strand>ATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCCTAATGTAAAAAAACTCAAAATATGTAGTGTCTCAAAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703448" ref_strand="+" ref_description="SGN-E703448 [FA21CB04]">
      <seq>caacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccangagctangtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcnaaaatcctatcctttatgntaggatttgtttggtgagagaataataaaaaatgcctcttgtaaaagcaatttgacgtttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94877" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95177" g_stop="95623" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="935" r_length="488" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="950" polyA_stop="965"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E703448" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95177" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCANGAGCTANGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCNAAAATCCTATCCTTTATGNTAGGATTTGTTTGGTGAGAGAATAAT-AAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715558" ref_strand="+" ref_description="SGN-E715558 [FB14CE09]">
      <seq>ggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttgggtgagagaataataaaaaaaatgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94892" stop="96696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95192" g_stop="95623" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96396" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="914" r_length="482" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E715558" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95192" e_stop="95623"/>
          <exon e_start="95917" e_stop="96396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTT-GGTGAGAGAATAAT-AAAAAAATGCCTC</genome_strand>
        <mrna_strand>GGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGGTGAGAGAATAATAAAAAAAATGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705996" ref_strand="+" ref_description="SGN-E705996 [FA28CH05]">
      <seq>acaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccangagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttangatttgtttggtgaaaagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94900" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95200" g_stop="95623" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96428" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="936" r_length="512" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E705996" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95200" e_stop="95623"/>
          <exon e_start="95917" e_stop="96428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTG-AGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCT</genome_strand>
        <mrna_strand>ACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATC-CTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCANGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTANGATTTGTTTGGTGAAAAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGACGTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709490" ref_strand="+" ref_description="SGN-E709490 [FA52AG11]">
      <seq>ccaatagagggctagncaatatggaagaagaggctcagaacaacataaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaataatgtagtgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94911" stop="96637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95200" g_stop="95623" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96337" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="844" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709490" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95200" e_stop="95623"/>
          <exon e_start="95917" e_stop="96337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTC</genome_strand>
        <mrna_strand>CCAATAGAGGGCTAGNCAATATGGAAGAAGAGGCTCAGAACAACATAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTC-AATAATGTAGTGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709551" ref_strand="+" ref_description="SGN-E709551 [FA52BF06]">
      <seq>aatagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctccaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattactccgttagccggacgtttatcggctatccgagccatgccagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94902" stop="96491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95202" g_stop="95623" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96191" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="697" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709551" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95202" e_stop="95623"/>
          <exon e_start="95917" e_stop="96191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGA</genome_strand>
        <mrna_strand>AATAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCCAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTACTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555463" ref_strand="+" ref_description="SGN-E555463 [cTSC-3-N17]">
      <seq>agacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94905" stop="96657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95205" g_stop="95623" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96357" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="860" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95205" e_stop="95623"/>
          <exon e_start="95917" e_stop="96357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGT</genome_strand>
        <mrna_strand>AGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709621" ref_strand="+" ref_description="SGN-E709621 [FA52CD10]">
      <seq>ctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94933" stop="96580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95233" g_stop="95623" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96280" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="755" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E709621" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95233" e_stop="95623"/>
          <exon e_start="95917" e_stop="96280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAG</genome_strand>
        <mrna_strand>CTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712505" ref_strand="+" ref_description="SGN-E712505 [FB05AB10]">
      <seq>gaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaatgcctcttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94945" stop="96702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95245" g_stop="95623" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96402" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="864" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E712505" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95245" e_stop="95623"/>
          <exon e_start="95917" e_stop="96402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAA</genome_strand>
        <mrna_strand>GAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAAT-AAAAAATGCCTCTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711548" ref_strand="+" ref_description="SGN-E711548 [FB02BC03]">
      <seq>ccgtttaagagggaaatgttaagtggattcgatcctcaagttccctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccatatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtggtctcaaaatcctatcctttatgttaggatttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94947" stop="96669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95250" g_stop="95623" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="381" r_length="373" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96369" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="834" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E711548" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95250" e_stop="95623"/>
          <exon e_start="95917" e_stop="96369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGT-GTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTT</genome_strand>
        <mrna_strand>GAGGGAA-ATGTTAAGTGGATTCGATCCTCAAGTTCCCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCATATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGGTCTC-AAAATCCTATCCTTTATGTTAGGATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716097" ref_strand="+" ref_description="SGN-E716097 [FB16AE01]">
      <seq>tgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgtaaggatttgtttggtgagagaatataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94959" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95259" g_stop="95623" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="853" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="868" polyA_stop="880"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E716097" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95259" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>TGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTAAGGATTTGTTTGGTGAGAGAAT-ATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556058" ref_strand="+" ref_description="SGN-E556058 [cTSD-2-E19]">
      <seq>cgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaagggcatttggcgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94972" stop="96720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95272" g_stop="95623" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96420" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="856" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95272" e_stop="95623"/>
          <exon e_start="95917" e_stop="96420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCA</genome_strand>
        <mrna_strand>CGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGGCATTTGGCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711972" ref_strand="+" ref_description="SGN-E711972 [FB03CB06]">
      <seq>ctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatngtaggatttgtttggtgagagaataataaaaaaatgcctctttgtaaagggcatttgacgttcaatttatcttttgagtgaatcgagaaatatatttgattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94989" stop="96761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95289" g_stop="95623" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96457" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="876" r_length="541" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="880" polyA_stop="889"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E711972" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95289" e_stop="95623"/>
          <exon e_start="95917" e_stop="96457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATT</genome_strand>
        <mrna_strand>CTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATNGTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTTGTAAAGGGCATTTGACGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553582" ref_strand="-" ref_description="SGN-E553582 [cTSC-1-J11]">
      <seq>gaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaacnttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgcgttcaaacctgcagcccgggggatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94991" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95291" g_stop="95623" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="822" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E553582" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95291" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACNTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554488" ref_strand="-" ref_description="SGN-E554488 [cTSC-4-H18]">
      <seq>aggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtgttattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttggcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="94992" stop="96718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95292" g_stop="95623" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96418" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="834" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554488" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554488" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95292" e_stop="95623"/>
          <exon e_start="95917" e_stop="96418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTT</genome_strand>
        <mrna_strand>AGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697538" ref_strand="+" ref_description="SGN-E697538 [FA03BB07]">
      <seq>ccggtaggttatacgaaagatccaggaggaggcccccgagaggcgtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95008" stop="96711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95308" g_stop="95623" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96411" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="811" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E697538" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95308" e_stop="95623"/>
          <exon e_start="95917" e_stop="96411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATT</genome_strand>
        <mrna_strand>CCGGTAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGCGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714454" ref_strand="+" ref_description="SGN-E714454 [FB11CA02]">
      <seq>gaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95033" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95333" g_stop="95623" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="780" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="806"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E714454" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95333" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556981" ref_strand="+" ref_description="SGN-E556981 [cTSD-2-B13]">
      <seq>ngaggaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaattatgggggggggcggggggggccgccccccacatgggcgttattgtgtaagatttaaaggctccgggtcctcaaaattagaaaagaaagaagaagaagaagaagaaagagaatggcatagtaaaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgaaagaataataaaaaaatgcctcttgtaaaaggcaatttggcgttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95093" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95339" g_stop="95623" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="364" r_length="287" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96423" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="871" r_length="507" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556981" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95339" e_stop="95623"/>
          <exon e_start="95917" e_stop="96423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCCGAGAGGGGTGTTATTGT-CCTGGCTGAGAACCTTCGGTTCCTC-CTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATT</genome_strand>
        <mrna_strand>GCCCCCCACATGGGCGTTATTGTGTAAGATTTAAAGGCTCCGGGTCCTCAAAATTAGAAAAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAAAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAAAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712765" ref_strand="+" ref_description="SGN-E712765 [FB05DA10]">
      <seq>gcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95039" stop="96720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95339" g_stop="95623" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="774" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="808"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E712765" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95339" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712928" ref_strand="+" ref_description="SGN-E712928 [FB06AH05]">
      <seq>gaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95071" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95371" g_stop="95623" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="742" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="767"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E712928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95371" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714944" ref_strand="+" ref_description="SGN-E714944 [FB12DE12]">
      <seq>cggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95091" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95391" g_stop="95623" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96422" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="739" r_length="506" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E714944" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95391" e_stop="95623"/>
          <exon e_start="95917" e_stop="96422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAAT</genome_strand>
        <mrna_strand>CGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGACGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701108" ref_strand="+" ref_description="SGN-E701108 [FA15AC01]">
      <seq>cgcgatagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaannnnnnannaananaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95097" stop="96704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95391" g_stop="95623" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="722" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="747"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701108" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95391" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CGCGATAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701198" ref_strand="+" ref_description="SGN-E701198 [FA15BC01]">
      <seq>cggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95091" stop="96700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95391" g_stop="95623" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96400" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="717" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E701198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95391" e_stop="95623"/>
          <exon e_start="95917" e_stop="96400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGT</genome_strand>
        <mrna_strand>CGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554245" ref_strand="-" ref_description="SGN-E554245 [cTSC-3-K8]">
      <seq>agaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95097" stop="96715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95397" g_stop="95623" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96415" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="726" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554245" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554245" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95397" e_stop="95623"/>
          <exon e_start="95917" e_stop="96415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGC</genome_strand>
        <mrna_strand>AGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715836" ref_strand="+" ref_description="SGN-E715836 [FB15BF05]">
      <seq>cgatagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaagagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95117" stop="96718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95416" g_stop="95623" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96421" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="713" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E715836" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95416" e_stop="95623"/>
          <exon e_start="95917" e_stop="96421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAA</genome_strand>
        <mrna_strand>CGATAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAAGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGACGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577682" ref_strand="-" ref_description="SGN-E577682 [LE15BG07]">
      <seq>gaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcgcaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95123" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95423" g_stop="95623" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="690" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="721"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E577682" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95423" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCGCAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714854" ref_strand="+" ref_description="SGN-E714854 [FB12CE07]">
      <seq>ccgatgaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95136" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95434" g_stop="95623" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="679" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="707"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E714854" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95434" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CCGATGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556263" ref_strand="+" ref_description="SGN-E556263 [cTSD-2-O3]">
      <seq>agaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttggcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95138" stop="96718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95438" g_stop="95623" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96418" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="688" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95438" e_stop="95623"/>
          <exon e_start="95917" e_stop="96418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTT</genome_strand>
        <mrna_strand>AGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699383" ref_strand="+" ref_description="SGN-E699383 [FA09DD10]">
      <seq>ccatttcctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatactgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttccaggcaagaggctaagagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95143" stop="96540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95441" g_stop="95623" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96240" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="507" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E699383" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95441" e_stop="95623"/>
          <exon e_start="95917" e_stop="96240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTG</genome_strand>
        <mrna_strand>CCATTTCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATACTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCCAGGCAAGAGGCTAAGAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717121" ref_strand="+" ref_description="SGN-E717121 [FB18DH12]">
      <seq>ctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttaaaaaaaaaaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95148" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95448" g_stop="95623" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="665" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="690"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E717121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95448" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715086" ref_strand="+" ref_description="SGN-E715086 [FB13BB10]">
      <seq>gagggtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcnnaaaaaaaanaaaaaaaagaaaaaaaaaaaaaaaaaaccttcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95219" stop="96719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95519" g_stop="95623" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="593" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="626"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E715086" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95519" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GA-GGGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713236" ref_strand="+" ref_description="SGN-E713236 [FB08AD05]">
      <seq>caatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcnnaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95257" stop="96719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95557" g_stop="95623" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="552" r_length="485" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="590"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E713236" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95557" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCA--C--TCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554081" ref_strand="+" ref_description="SGN-E554081 [cTSC-3-C3]">
      <seq>caacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnngggggggggggggccccccccccccccccccaggggggggaaaaaaaaatttggggggggcttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95615" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95620" g_stop="95623" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95917" g_stop="96405" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="493" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96406" i_stop="96717" i_length="312">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96718" g_stop="96743" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="519" r_length="26" r_score="0.769"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96744" i_stop="100632" i_length="3889">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100633" g_stop="100657" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="544" r_length="25" r_score="0.760"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100658" i_stop="101017" i_length="360">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101018" g_stop="101061" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="588" r_length="44" r_score="0.523"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101062" i_stop="101112" i_length="51">
            <donor d_prob="0.900" d_score="0.52"/>
            <acceptor a_prob="0.000" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101113" g_stop="101173" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="649" r_length="61" r_score="0.475"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554081" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95620" e_stop="95623"/>
          <exon e_start="95917" e_stop="96405"/>
          <exon e_start="96718" e_stop="96743"/>
          <exon e_start="100633" e_stop="100657"/>
          <exon e_start="101018" e_stop="101061"/>
          <exon e_start="101113" e_stop="101173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATTGTTATCTTTCTGATACATATATCAAGCATGGCATTCTATTGATAATTCAAATTAGAATAATTAAATATCTAACTTGATTAGGTCTGTATAACATGACCGATCAATAGATTTAATTTTTTTTTCATACATTAAGTCCCTCAATATGTCTCCATCTGTATAATTAGCATTATTTCACATGCCAATAATGTATTTCCCACTATCTACTCATTAGTGGTAACTTTATACTATATGTTAAAACTAAAAACAAAGAAGTTCAAATATCAAAATAAATAAAATAATAAAAGAATTTGGTGGTCCTCCCCATATTTAATGGTCAAGAAAAAAACACATAAAAATTTTCCAACTTGTCATACTCCAAATTTATGATGAAACCCAAAATTGACCCCTCAAAGTTCTGGTAATTCTGAAAATTCCTCAGTCTTTATGAAAAAGTTGAACAAAAAGTCCATGTCAATGTCATCCTCCATTATTGTTGTACTATTAAACATGTCTAAGCTTTCAAATTCTTCACCATCCATATTAGTAACAAAGTCGAAATTGTTCTCTATCGTTAATTCATCCGTCCAGAAGCTCTCATCGATCTTGGCGAAATACTCCGATGAGTCCATTTCTTCTTGTTTAATCACTATTTGATCGTCGATCGTCGTATCGAAAGTACCACTTGATGATGAATTGGTTGTCATGATTGACGTCTCGCTAGACGATATTTCTGGTGAGTTAGGAGCATGCATGCAATTATTTATTTGATTAATTTTTTTGTGTCTTTTGAAGCTTCGAGGAGACTGACAATTTTTTAGCCTTTTCTTCAAGTGGGTGTGCCAAATATTTTTTATTTCATTATCCGTTCTTCCCGGTAATCTTGCTGCTATTGCTGACCATCTGAAGAAAAAAAAATATTTTTTAATTAGAATAAAAATATAATATAAAAATCTTTCTAAATAATATATATATATATATGTATTATCGCATTGATATTTGAGATTTTACTTAAATATATTATACTTATAATGTCAAATCCAGAGAAATAGGGATCTTTGTCACATCTACAGTTATATTTTTAATTACAATAAATGCATATATTTCTATTGTATAGATTTTCTAATAGAATTATAATTAATATTCTATTTACCAACTTATCTAAACGAATCTTTTCACAATTTTTTTTAAAAAAAGAGATGGGCATAAGGACATGTTATATCAAAGTGTGTGTAGATAACTCTGCATTTTGAATCCCTTATTCAAAAATTTTACAAAAATATTAAAAATTAGAGAAGGACTATTACATCTTCACTAAATAATAAATTTGTGCTTAATTCTATTAACAATAGAATAATGATAAATTATTTTTAAAAAATTATATTAGCTATCGATACTATATGTAGATATATATATTAGCAATAAATTTCATAACTAATTACTGACCTATTTCCAAGAATTTCATGTAAATTGATGATATTATCTTCTTCTTCTTTGGTGAAATTTCCCCTCTTAATATGTGGACTCAAATAATTCATCCACCTCAATCTGCAACTTTTTCCACATCTCAATAATCCTGAATTAAAAAAAAAAAAAGGCAAAATTAATATGAGAAATGAGTTTTATTTTAAAAAATTTGAAGAAAAATATAAATCAAAAATAGGTTTTTATTCTTTAAAAGCATCTTTCTTTTTTCCTTCCAATTCCATCATATTTTTCTAATAATTTCTTCATCAATTTTTTTAGTAAACATAATAAGCCAATAAAATACTCCGTATAAGCAAAACATTTTATTTTTAAAAAAAACGAAAAATTGCAGTTCTAAATATAACATATTATTTGTGTTAAATGTAGTTTCGGAGAACAACAATTTGTTTTTAATAAATTATTTTTAAAAAATACTTGTTACTAATATTAGATCTAACAATTTATGCTTGACCAAAATTCTCAAAGTGCTACCACAAAAAACTTCTCTACTACATAACGTCACGTAAATTGAAATAGATAAAAAATATATATAGTAGTTTTTGAGCAATTACCAGCTTGTCTAGGGAGTGCGCGCCAATTGCCATGGCCATTTTTGTTAATGTAAGAGATGAGAATTTGGTCTTCTTCGTGATCCCATGACCCTTTCTTCAAGCTCGTTTTCTCACAAGAAGGTGCTCTGTCCATTTTTCTTTTTTCTCAATCGTTTTTTTTTAAACAGACTAAAAAAAATAACTTTAACTTCTTTCTATATCTTTTTTTTTTCTCCAAATTTTTGTGTGTGAGAGAAATTATTAGAAGTCTCACTCTTCAGTTTCAGTGGAAAGAAAGAGAGAAAATGGTTTGTGTGTTTAGTGAAGGCTAAGAATGGGTATTTATATTAACATATATTATGAAAGATATAAAAAAAAATAGTCAAAGGTCAAAAAGTTGTTTATTGCAATTTCCATGAAGTTGTGTTTGTTTTTGTATTTATTCTCATTAATAATAATTAACATAATTAGATATTGTATAATGCAAGCTCGTAGACCATAAAAAAGGGATGGAGAAAATGTGCGTTTTATTTCATGTCTTACGTATTTCTTACGTAGTTTTTTTTAGCCATATCAAATTTATTTTGTGCTATTTAAAAAATAAATAAATACATAAAATATTTTATTTTTTCATATTACATATCTGAACTATCGGGTATCAATCATTTTCGTAACTAACCTATCATCAATTATTTGACAAAAAATATATACTTCAACTGTTAATTGTTCTATTTTCATACATGAATAATAACGGTAATACTCTAGATAGAAAAAGTAAACAACTGATAATTGAAGTGTGTTTTGATAAATAATTAATAGTAATTCGAGTGACAAACTCACATAACTAATAATTCAGATACGAAACTTGAAAAAACATGACACTTTAGTAAATTTTTTTAACCATTATTCTTTTTTTATAAATGGAGAATCGAACTCTAATTAATAAAGTAAAAATTGAAATAGTCAACCAATTATATTTATAAAATTATTTACATGTAAGTGACTTACGAATTTAAAAACCTTCTTTGATTTATTAAATTTTATTCACAATATAATCTTTACATACACTCGTGATTCGAATATAATTTTGTTGTTTACTTTTGTCAGTTTCTCTCTCTATATATATTGATTATACACTATTAAACATATATTATATATGATCATCCATACTTATTTTATTGTTTTTAATTTAAATAATTAAATGAACGGCTGTTTGAATTATTTAATAAAGCACCTTTAGACTAAAATGAGATGAATAATATTTATGTTCAATGTTGTCACTTTATAAGCTTCTTTCTTTTTCATAAAAAAGATTTCCTTTAAATTTATTGAGTTTGTTATTAATCAATAATTTCTAATACGTTACCCGTTGCCAGTTGGTTCCCTTTGGAAGAAAAATTGTTCAACTCTCATAAATTTCATCAAAATATAGTGAGCATCAAATAGCCACGTGCTCTATGTTTAACGTGAACGGTTTTTAAAATTCAGAAGCGAATTTAAAATTTAAAATTTATATATTTTAAAATAAATTTAAGTTATTTAAATGTGATATATTTATTTGAACTTTAAAATGCAAAAATATTACGTAAATTAGAACGAAGGAGTAACTTTTTTTATTTAAACAAAAAATAAAAAAAATTGACCATTATGAGGAACAAAAAGTCAAATAATTAATCATTATTACTAAATTACTGATTAAGATAATAGGGTGCCGGGAAATAGAGCACTTTGACCCAATTAGTCAAAGTCAAGTATTTAGGGCTGCACACGAATGTGCGTTTCCTTAGTGGTACTAGTGATCTAAGCGAGTTAAATTTCTTCGAAAATGTCTTCAGGTACATTTTTAATTTTACAGAAGTAACGTATTTTTGGAAGATTTAAAATGAATACAATAACTTTCTTAGTGAGTCCAATAACATAAGTAAATATTTTCGTAAATAACTTACCATTACATGTTTTAGTATGTAAAAAGAGGAAAAGGTGAGTAATAAATATGAGATATGGAGAGAGAATAGTCAAATTTCGATCTTCGCACTATATTAGTAGTTTACTTTTTCATTTTTTTTCACATCCTACGAAATTATAAATAATCAAGAAGGACAATTTTACTTATTTACTTGATAAGAGACATTTTCAAAACTTTATAAATTTATTTACACTTTTAACAAGTCTATCTTAAAGAATAAAATGAAAAAAATAATAATAAGTCTATCTTAAATATCGCACAAACTAAGTCAAAAGCTCATGAAAAAATCCAAAAGAGGAGGAGGTGGTAGAAGAAGAAGAATTCAAAAAATAAAAATCTCACAGTGTTAAGAGCTAATTATGTTCTATTCTAACTCTTATTCAAATTACAAAAATTTCTTAATTTTGGTGGAATACGGATATACCCCAAAACATCCCGATACACCTCTAAACGTCCTGATATGTTCTGTAAAGTAATGTATCTGACCAATATATTATGTAAAGTGATGTTTTTGAGAATAGCATAGAGTAAGAATATTCTTAATCCGTTTCAAATGGTAGAGAATTTTAGAAAATATAATAAACTAAATTGTGTATTTAGATAAAAAAAATTAAAAATGGATTAAATAACAGGCCATCGCGAAGATACCCTTAATGGGCTGGGCCAAGAAGGCACGGGCTAAAACCTGAGGCGAGCCAACCCAAACCATCTATAAATTTAGGAAAAATTACATAAATTAGTACATTTTAATAAATA</genome_strand>
        <mrna_strand>CAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG........................................................................................................................................................................................................................................................................................................................GCAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAANNNNNGGGGGGGGGGGGG...................................................CCCCCCCCCCCCCCCCCCAGGGGGGGGAAAAAAAAATTTGGGGGGGGCTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554713" ref_strand="+" ref_description="SGN-E554713 [cTSC-5-C9]">
      <seq>gctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaaaaaaaaaaaatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95620" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95920" g_stop="96405" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="502"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E554713" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95920" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGT-AAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555837" ref_strand="+" ref_description="SGN-E555837 [cTSD-1-J10]">
      <seq>gctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaaaaaaaaaaattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95620" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95920" g_stop="96405" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="501"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555837" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95920" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGT-AAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555951" ref_strand="+" ref_description="SGN-E555951 [cTSD-1-O5]">
      <seq>gctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaaaaaaaaaaattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95620" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95920" g_stop="96405" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="501"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E555951" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95920" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGT-AAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556821" ref_strand="+" ref_description="SGN-E556821 [cTSD-4-L15]">
      <seq>gctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaaaaaaaaaaaatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95620" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95920" g_stop="96405" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="502"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95920" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGT-AAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>GCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711558" ref_strand="+" ref_description="SGN-E711558 [FB02BD01]">
      <seq>ccgcttcacattggaacttgaacgctcactcaatcatctataccctccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95629" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95927" g_stop="96405" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="520"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E711558" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95927" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>CCGCTTCACATTGGAACTTGAACGCTCACTCAATCATCTATACCCTCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244203" ref_strand="+" ref_description="SGN-E244203 [cLEE-1-N4]">
      <seq>tatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95751" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96051" g_stop="96420" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96421" i_stop="98017" i_length="1597">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98018" g_stop="98036" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="389" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E244203" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96051" e_stop="96420"/>
          <exon e_start="98018" e_stop="98036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATTGTTATCTTTCTGATACATATATCAAGCATGGCATTCTATTGATAATTCAAATTAGAATAATTAAATATCTAACTTGATTAGGTCTGTATAACATGACCGATCAATAGATTTAATTTTTTTTTCATACATTAAGTCCCTCAATATGTCTCCATCTGTATAATTAGCATTATTTCACATGCCAATAATGTATTTCCCACTATCTACTCATTAGTGGTAACTTTATACTATATGTTAAAACTAAAAACAAAGAAGTTCAAATATCAAAATAAATAAAATAATAAAAGAATTTGGTGGTCCTCCCCATATTTAATGGTCAAGAAAAAAACACATAAAAATTTTCCAACTTGTCATACTCCAAATTTATGATGAAACCCAAAATTGACCCCTCAAAGTTCTGGTAATTCTGAAAATTCCTCAGTCTTTATGAAAAAGTTGAACAAAAAGTCCATGTCAATGTCATCCTCCATTATTGTTGTACTATTAAACATGTCTAAGCTTTCAAATTCTTCACCATCCATATTAGTAACAAAGTCGAAATTGTTCTCTATCGTTAATTCATCCGTCCAGAAGCTCTCATCGATCTTGGCGAAATACTCCGATGAGTCCATTTCTTCTTGTTTAATCACTATTTGATCGTCGATCGTCGTATCGAAAGTACCACTTGATGATGAATTGGTTGTCATGATTGACGTCTCGCTAGACGATATTTCTGGTGAGTTAGGAGCATGCATGCAATTATTTATTTGATTAATTTTTTTGTGTCTTTTGAAGCTTCGAGGAGACTGACAATTTTTTAGCCTTTTCTTCAAGTGGGTGTGCCAAATATTTTTTATTTCATTATCCGTTCTTCCCGGTAATCTTGCTGCTATTGCTGACCATCTGAAGAAAAAAAAATATTTTTTAATTAGAATAAAAATATAATATAAAAATCTTTCTAAATAATATATATATATATATGTATTATCGCATTGATATTTGAGATTTTACTTAAATATATTATACTTATAATGTCAAATCCAGAGAAATAGGGATCTTTGTCACATCTACAGTTATATTTTTAATTACAATAAATGCATATATTTCTATTGTATAGATTTTCTAATAGAATTATAATTAATATTCTATTTACCAACTTATCTAAACGAATCTTTTCACAATTTTTTTTAAAAAAAGAGATGGGCATAAGGACATGTTATATCAAAGTGTGTGTAGATAACTCTGCATTTTGAATCCCTTATTCAAAAATTTTACAAAAATATTAAAAATTAGAGAAGGACTATTACATCTTCACTAAATAATAAATTTGTGCTTAATTCTATTAACAATAGAATAATGATAAATTATTTTTAAAAAATTATATTAGCTATCGATACTATATGTAGATATATATATTAGCAATAAATTTCATAACTAATTACTGACCTATTTCCAAGAATTTCATGTAAATTGATGATATTATCTTCTTCTTCTTTGGTGAAATTTCCCCTCTTAATATGTGGACTCAAATAATTCATCCACCTCAATCTGCAACTTTTTCCACATCTCAATAATCCTGAATTAAAAAAAAAAAAAGGCAAAA</genome_strand>
        <mrna_strand>TATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGACGTTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717175" ref_strand="+" ref_description="SGN-E717175 [FB19BD02]">
      <seq>agaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95783" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96083" g_stop="96405" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="349"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E717175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96083" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</genome_strand>
        <mrna_strand>AGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556537" ref_strand="+" ref_description="SGN-E556537 [cTSD-3-M3]">
      <seq>ctcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttggcgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="95904" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96204" g_stop="96415" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96416" i_stop="96709" i_length="294">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96710" g_stop="96744" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="247" r_length="35" r_score="0.657"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E556537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96204" e_stop="96415"/>
          <exon e_start="96710" e_stop="96744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATTGTTATCTTTCTGATACATATATCAAGCATGGCATTCTATTGATAATTCAAATTAGAATAATTAAATATCTAACTTGATTAGGTCTGTATAACATGACCGATCAATAGATTTAATTTTTTTTTCATACATTAAGTCCCTCAATATGTCTCCATCTGTATAATTAGCATTATTTCACATGCCAATAATGTATTTCCCACTATCTACTCATTAGTGGTAACTTTATACTATATGTTAAAACTAAAAACAAAGAAGTTCAAATATCAAAATAAATAAAATAATAAAAGAAT</genome_strand>
        <mrna_strand>CTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGC......................................................................................................................................................................................................................................................................................................GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379773" ref_strand="+" ref_description="SGN-E379773 [TUS-1-F3](-)">
      <seq>aagacacaataaaattaatcaaataaataattgcatgcatgctcctaactcaccagaaatatcgtctagcgagacgtcaatcatgacaaccaattcatcatcaagtggtactttcgatacgacgatcgacgatcaaatagtgattaaacaagaagaaatggactcatcggagtatttcgccaagatcgatgagagcttttggacggatgaattaacgatagagaacaatttcgactttgttactaatatggatggtgaagaatttgaaagcttagacatgtttaatagtacaacaataatggaggatgacattgacatggactttttgttcaactttttcataaagactgaggaattttcagaattaccagaactttgaggggtcaattttgggtttcatcataaatttggagtatgacaagttggaaaatttttatgtgtttttttctagaccattaaatatggggaggacctccaaattcttttattattttatttattttgatatttgaacttctttgtttttagttttaacatatagtataaagtttccactaatgagtagatagtgggaaatacattattggcatgtgaaataatgctaattatacagatggagacatattgagggtcttaatgtatgaaaaaacaattaaatctattgatcggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="97522" stop="96250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97222" g_stop="96550" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E379773" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97222" e_stop="96550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTCTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTTGACCATTAAATATGGGGAGGACCACCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTACCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGACTTAATGTATGAAAAAAAAATTAAATCTATTGATCGGTCAT</genome_strand>
        <mrna_strand>AAGACACAATAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTTTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTAGACCATTAAATATGGGGAGGACCTCCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTTCCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGTCTTAATGTATGAAAAAACAATTAAATCTATTGATCGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340521" ref_strand="+" ref_description="SGN-E340521 [cTOF-1-F6]">
      <seq>tttctttccactgaaactgaagagtgagacttctaataatttctctcacccacaaaaatttggagaaaaaaaaagaagttaaaaagttattttttttagtctgtttcaaaaaaatgattgagaaaaaaaaatgggcagagcaccttgttgtgagaaaatgagcttgaagaaagggccatgggatcacgaagaagaccaaattctcatctcttatattaacaaaaatggccatggcaattggcgcgcgctccctagacaagctggattattgagatgtggaaaaagttgcagattgaggtggatgaattatttgagtccacatattaagaggggaaatttcaccaaagaagaagaagataatatcatcaatttacatgaaattcttggcaatagatggtcagcaatagcagcaagattaccgggaagaacggataatgaaataaaaaatatttggcacacccacttgaagaaaaggctaaaaaattgtcagtctcctcgaaacttcaaaagacacaataaaattaatcaaataaataattgcatgcatgctcctaactcaccagaaatatcgtctagcgagacgtcaatcatgacaaccaattcatcatcaagtggtactttcgatacgacgatcgacgatcaaatagtgattaaacaagaagaatggactcatcggagtatttcgccaagatcgatgagagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="99048" stop="96723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98748" g_stop="98473" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98009" g_stop="97880" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97336" g_stop="97023" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="706" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E340521" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98748" e_stop="98473"/>
          <exon e_start="98009" e_stop="97880"/>
          <exon e_start="97336" e_stop="97023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTGGTAATTGCTCAAAAACTACTATATATATTTTTTATCTATTTCAATTTACGTGACGTTATGTAGTAGAGAAGTTTTTTGTGGTAGCACTTTGAGAATTTTGGTCAAGCATAAATTGTTAGATCTAATATTAGTAACAAGTATTTTTTAAAAATAATTTATTAAAAACAAATTGTTGTTCTCCGAAACTACATTTAACACAAATAATATGTTATATTTAGAACTGCAATTTTTCGTTTTTTTTAAAAATAAAATGTTTTGCTTATACGGAGTATTTTATTGGCTTATTATGTTTACTAAAAAAATTGATGAAGAAATTATTAGAAAAATATGATGGAATTGGAAGGAAAAAAGAAAGATGCTTTTAAAGAATAAAAACCTATTTTTGATTTATATTTTTCTTCAAATTTTTTAAAATAAAACTCATTTCTCATATTAATTTTGCCTTTTTTTTTTTTTAATTCAGGATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAGGTCAGTAATTAGTTATGAAATTTATTGCTAATATATATATCTACATATAGTATCGATAGCTAATATAATTTTTTAAAAATAATTTATCATTATTCTATTGTTAATAGAATTAAGCACAAATTTATTATTTAGTGAAGATGTAATAGTCCTTCTCTAATTTTTAATATTTTTGTAAAATTTTTGAATAAGGGATTCAAAATGCAGAGTTATCTACACACACTTTGATATAACATGTCCTTATGCCCATCTCTTTTTTTAAAAAAAATTGTGAAAAGATTCGTTTAGATAAGTTGGTAAATAGAATATTAATTATAATTCTATTAGAAAATCTATACAATAGAAATATATGCATTTATTGTAATTAAAAATATAACTGTAGATGTGACAAAGATCCCTATTTCTCTGGATTTGACATTATAAGTATAATATATTTAAGTAAAATCTCAAATATCAATGCGATAATACATATATATATATATATTATTTAGAAAGATTTTTATATTATATTTTTATTCTAATTAAAAAATATTTTTTTTTCTTCAGATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTCT</genome_strand>
        <mrna_strand>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACCCACAAAAATTTGGAGAAAAAAAAA-G--A-AG--TTAA---AAAGTTATTTTTTTTAGTCTGTTT-CAAAAAAATGATTGAG--AAAA-AAAAATGGGCAGAGCACCTTGTTGTGAGAAAATGAGCTTGAAGAAAGGGCCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTATATTAACAAAAATGGCCATGGCAATTGGCGCGCGCTCCCTAGACAAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGCAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAACTTCAAAAGACACAATAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAG-AATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379604" ref_strand="+" ref_description="SGN-E379604 [TUS-1-F3]">
      <seq>ttctttccactgaaactgaagagtgagacttctaataatttctctcacccacaaaaatttggagaaaaaaaaagaagttaaaaagttattttttttagtctgtttcaaaaaaatgattgagaaaaaaaaatgggcagagcaccttgttgtgagaaaatgagcttgaagaaagggccatgggatcacgaagaagaccaaattctcatctcttatattaacaaaaatggccatggcaattggcgcgcgctccctagacaagctggattattgagatgtggaaaaagttgcagattgaggtggatgaattatttgagtccacatattaagaggggaaatttcaccaaagaagaagaagataatatcatcaatttacatgaaattcttggcaatagatggtcagcaatagcagcaagattaccgggaagaacggataatgaaataaaaaatatttggcacacccacttgaagaaaaggctaaaaaattgtcagtctcctcgaaacttcaaaagacacaataaaattaatcaaataaataattgcatgcatgctcctaactcaccagaaatatcgtctagcgagacgtcaatcatgacaaccaattcatcatcaagtggtactttcgatacgacgatcgacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="99047" stop="96790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98747" g_stop="98473" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98009" g_stop="97880" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97336" g_stop="97090" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="639" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E379604" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98747" e_stop="98473"/>
          <exon e_start="98009" e_stop="97880"/>
          <exon e_start="97336" e_stop="97090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTGGTAATTGCTCAAAAACTACTATATATATTTTTTATCTATTTCAATTTACGTGACGTTATGTAGTAGAGAAGTTTTTTGTGGTAGCACTTTGAGAATTTTGGTCAAGCATAAATTGTTAGATCTAATATTAGTAACAAGTATTTTTTAAAAATAATTTATTAAAAACAAATTGTTGTTCTCCGAAACTACATTTAACACAAATAATATGTTATATTTAGAACTGCAATTTTTCGTTTTTTTTAAAAATAAAATGTTTTGCTTATACGGAGTATTTTATTGGCTTATTATGTTTACTAAAAAAATTGATGAAGAAATTATTAGAAAAATATGATGGAATTGGAAGGAAAAAAGAAAGATGCTTTTAAAGAATAAAAACCTATTTTTGATTTATATTTTTCTTCAAATTTTTTAAAATAAAACTCATTTCTCATATTAATTTTGCCTTTTTTTTTTTTTAATTCAGGATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAGGTCAGTAATTAGTTATGAAATTTATTGCTAATATATATATCTACATATAGTATCGATAGCTAATATAATTTTTTAAAAATAATTTATCATTATTCTATTGTTAATAGAATTAAGCACAAATTTATTATTTAGTGAAGATGTAATAGTCCTTCTCTAATTTTTAATATTTTTGTAAAATTTTTGAATAAGGGATTCAAAATGCAGAGTTATCTACACACACTTTGATATAACATGTCCTTATGCCCATCTCTTTTTTTAAAAAAAATTGTGAAAAGATTCGTTTAGATAAGTTGGTAAATAGAATATTAATTATAATTCTATTAGAAAATCTATACAATAGAAATATATGCATTTATTGTAATTAAAAATATAACTGTAGATGTGACAAAGATCCCTATTTCTCTGGATTTGACATTATAAGTATAATATATTTAAGTAAAATCTCAAATATCAATGCGATAATACATATATATATATATATTATTTAGAAAGATTTTTATATTATATTTTTATTCTAATTAAAAAATATTTTTTTTTCTTCAGATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGAT</genome_strand>
        <mrna_strand>TTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACCCACAAAAATTTGGAGAAAAAAAAA-G--A-AG--TTAA---AAAGTTATTTTTTTTAGTCTGTTT-CAAAAAAATGATTGAG--AAAA-AAAAATGGGCAGAGCACCTTGTTGTGAGAAAATGAGCTTGAAGAAAGGGCCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTATATTAACAAAAATGGCCATGGCAATTGGCGCGCGCTCCCTAGACAAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGCAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAACTTCAAAAGACACAATAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235722" ref_strand="+" ref_description="SGN-E235722 [cLED-15-F24]">
      <seq>gacttctaataatttctctcacccacaaaaatttggagaaaaaaaaagaagttaaaaagttattttttttagtctgtttcaaaaaaatgattgagaaaaaaaaatgggcagagcaccttgttgtgagaaaatgagcttgaagaaagggccatgggatcacgaagaagaccaaattctcatctcttatattaacaaaaatggccatggcaattggcgcgcgctccctagacaagctggattattgagatgtggaaaaagttgcagattgaggtggatgaattatttgagtccacatattaagaggggaaatttcaccaaagaagaagaagataatatcatcaatttacatgaaattcttggcaatagatggtcagcaatagcagcaagattaccgggaagaacggataatgaaataaaaaatatttggcacacccacttgaagaaaaggctaaaaaattgtcagtctcctcgaaacttcaaaagacacaattaaattaatcaaataaataattgcatgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="99021" stop="96881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98721" g_stop="98473" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98009" g_stop="97880" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="366" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97336" g_stop="97181" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="522" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E235722" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98721" e_stop="98473"/>
          <exon e_start="98009" e_stop="97880"/>
          <exon e_start="97336" e_stop="97181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTGGTAATTGCTCAAAAACTACTATATATATTTTTTATCTATTTCAATTTACGTGACGTTATGTAGTAGAGAAGTTTTTTGTGGTAGCACTTTGAGAATTTTGGTCAAGCATAAATTGTTAGATCTAATATTAGTAACAAGTATTTTTTAAAAATAATTTATTAAAAACAAATTGTTGTTCTCCGAAACTACATTTAACACAAATAATATGTTATATTTAGAACTGCAATTTTTCGTTTTTTTTAAAAATAAAATGTTTTGCTTATACGGAGTATTTTATTGGCTTATTATGTTTACTAAAAAAATTGATGAAGAAATTATTAGAAAAATATGATGGAATTGGAAGGAAAAAAGAAAGATGCTTTTAAAGAATAAAAACCTATTTTTGATTTATATTTTTCTTCAAATTTTTTAAAATAAAACTCATTTCTCATATTAATTTTGCCTTTTTTTTTTTTTAATTCAGGATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAGGTCAGTAATTAGTTATGAAATTTATTGCTAATATATATATCTACATATAGTATCGATAGCTAATATAATTTTTTAAAAATAATTTATCATTATTCTATTGTTAATAGAATTAAGCACAAATTTATTATTTAGTGAAGATGTAATAGTCCTTCTCTAATTTTTAATATTTTTGTAAAATTTTTGAATAAGGGATTCAAAATGCAGAGTTATCTACACACACTTTGATATAACATGTCCTTATGCCCATCTCTTTTTTTAAAAAAAATTGTGAAAAGATTCGTTTAGATAAGTTGGTAAATAGAATATTAATTATAATTCTATTAGAAAATCTATACAATAGAAATATATGCATTTATTGTAATTAAAAATATAACTGTAGATGTGACAAAGATCCCTATTTCTCTGGATTTGACATTATAAGTATAATATATTTAAGTAAAATCTCAAATATCAATGCGATAATACATATATATATATATATTATTTAGAAAGATTTTTATATTATATTTTTATTCTAATTAAAAAATATTTTTTTTTCTTCAGATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGC</genome_strand>
        <mrna_strand>GACTTCTAATAATTTCTCTCACCCACAAAAATTTGGAG-AAAAAAAAAG--A-AG--TTAA---AAAGTTATTTTTTTTAGTCTGTTTCAA-AAAAATGATTGAG--AAAA-AAAAATGGGCAGAGCACCTTGTTGTGAGAAAATGAGCTTGAAGAAAGGGCCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTATATTAACAAAAATGGCCATGGCAATTGGCGCGCGCTCCCTAGACAAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGCAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAACTTCAAAAGACACAATTAAATTAATCAAATAAATAATTGCATGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201187" ref_strand="+" ref_description="SGN-E201187 [cLEC-10-E23]">
      <seq>aaaaatttggagaaaaaaaaaaaagttaaaaagttattttttttagtctgtttcaaaaaaatgattgagaaaaaaaaatgggcagagcaccttgttgtgagaaaatgagcttgaagaaagggccatgggatcacgaagaagaccaaattctcatctcttatattaacaaaaatggccatggcaattggcgcgcgctccctagacaagctggattattgagatgtggaaaaagttgcagattgaggtggatgaattatttgagtccacatattaagaggggaaatttcaccacagaagaagaagataatatcatcaatttacatgaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="98995" stop="97588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98695" g_stop="98473" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98009" g_stop="97888" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="332" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E201187" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98695" e_stop="98473"/>
          <exon e_start="98009" e_stop="97888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTGGTAATTGCTCAAAAACTACTATATATATTTTTTATCTATTTCAATTTACGTGACGTTATGTAGTAGAGAAGTTTTTTGTGGTAGCACTTTGAGAATTTTGGTCAAGCATAAATTGTTAGATCTAATATTAGTAACAAGTATTTTTTAAAAATAATTTATTAAAAACAAATTGTTGTTCTCCGAAACTACATTTAACACAAATAATATGTTATATTTAGAACTGCAATTTTTCGTTTTTTTTAAAAATAAAATGTTTTGCTTATACGGAGTATTTTATTGGCTTATTATGTTTACTAAAAAAATTGATGAAGAAATTATTAGAAAAATATGATGGAATTGGAAGGAAAAAAGAAAGATGCTTTTAAAGAATAAAAACCTATTTTTGATTTATATTTTTCTTCAAATTTTTTAAAATAAAACTCATTTCTCATATTAATTTTGCCTTTTTTTTTTTTTAATTCAGGATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTT</genome_strand>
        <mrna_strand>AAAAATTTGGAGAAAAA-AAAA-A-A-AG--TTAA---AAAGTTATTTTTTTTAGTCTGTTT-CAAAAAAATGATTGAG--AAAA-AAAAATGGGCAGAGCACCTTGTTGTGAGAAAATGAGCTTGAAGAAAGGGCCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTATATTAACAAAAATGGCCATGGCAATTGGCGCGCGCTCCCTAGACAAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCACAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747634" ref_strand="+" ref_description="SGN-E747634 [GI|2570524]">
      <seq>agaaagtgcacaattttttgaaccaattttaggcattatggctgtgggggataatgataataataatttacaagtgcttaatgcacttgatttggctaaaactcaactttaccattttacagctattgttattgctggaatgggattttttactgatgcttatgatctgtttagtatttctcttgtcactaaattgcttgggcgtttatactataccaaaccggatcttttgaaacccggaacactccctccggccgtatcagcctcggtcacgggtgttgcccttgttggcaccctagccggccagctattctttggctggctaggtgacaaaatgggacgaaaaaaggtgtatggtatgactttagttctcatggttgtgtgttctgttgcttcagggctctcctttggtagtacacctaagggtgttatgactacattgtgtttttttaggttttggcttggatttggtattggtggtgattaccctttgtccgctaccatcatgtctgaatacgctaacaaaaagacacgtggtgcattcatagcggcggtattcgctatgcaaggttttggaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggcctaacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcaacatgtcatggaatttcagcggctgcaggtaaggctggagctatagtgggagcgtatgggttcttatacgctgcacaaagtaaagatccaaacaaaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctaggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcacttttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="105114" stop="102893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104813" g_stop="103193" g_length="1621"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="1641" r_length="1621" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103192" i_stop="102953" i_length="240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.256" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102952" g_stop="102893" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1642" r_stop="1702" r_length="61" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1809" polyA_stop="1826"/>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E747634" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1681</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104813" e_stop="103193"/>
          <exon e_start="102952" e_stop="102893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGTTTTGAAAAATTGAGTTGTAATTTTGTGTGATGACTGATGCAACTCTTGTAATTTTGTTTTTTTCTTTCTTTTCTATGTATGTGTTTGCTTTATTTTAAATGAAAATTGTTCCAAAATAGATTTATCCACTATTAAATGAGTTCATACATTGGTGCTTTTAAGGTGATAAGAACTTCGAAAATAACTATGTATCTATTAATTAGATGACTTTTGGAATGATATCTTTATACTATAAATAGAGAATCACTCACCATTTGAAAGATATACTT-GAATAA-GAAAATTTTCTCCTCTATTTTATA</genome_strand>
        <mrna_strand>AACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGG................................................................................................................................................................................................................................................AAAATCACTTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCT-TTGTATTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543803" ref_strand="+" ref_description="SGN-E543803 [TUS-65-M23]">
      <seq>ggaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggccctacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcacatgtcatggaatttcagcggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="104559" stop="103139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104259" g_stop="103439" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E543803" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104259" e_stop="103439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGC</genome_strand>
        <mrna_strand>GGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCCTACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATC-ACATGTCATGGAATTTCAGCGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305487" ref_strand="+" ref_description="SGN-E305487 [cLEX-15-D8]">
      <seq>gaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctctctacagtcagaatttgtttcataaggatgtgttctccgacgtcggatggatccctaaagctccaacaatgaacgctgttcatgaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="104481" stop="103408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104181" g_stop="103708" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E305487" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104181" e_stop="103708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCA</genome_strand>
        <mrna_strand>GAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTCTCTACAGTCAGAATTTGTTTCATAAGGATGTGTTCTCCGACGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCATGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306582" ref_strand="+" ref_description="SGN-E306582 [cLEX-13-J24]">
      <seq>gaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="-" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="104558" stop="103420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104258" g_stop="103720" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="-" ref_id="SGN-E306582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104258" e_stop="103720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGT</genome_strand>
        <mrna_strand>GAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747634" ref_strand="+" ref_description="SGN-E747634 [GI|2570524]">
      <seq>agaaagtgcacaattttttgaaccaattttaggcattatggctgtgggggataatgataataataatttacaagtgcttaatgcacttgatttggctaaaactcaactttaccattttacagctattgttattgctggaatgggattttttactgatgcttatgatctgtttagtatttctcttgtcactaaattgcttgggcgtttatactataccaaaccggatcttttgaaacccggaacactccctccggccgtatcagcctcggtcacgggtgttgcccttgttggcaccctagccggccagctattctttggctggctaggtgacaaaatgggacgaaaaaaggtgtatggtatgactttagttctcatggttgtgtgttctgttgcttcagggctctcctttggtagtacacctaagggtgttatgactacattgtgtttttttaggttttggcttggatttggtattggtggtgattaccctttgtccgctaccatcatgtctgaatacgctaacaaaaagacacgtggtgcattcatagcggcggtattcgctatgcaaggttttggaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggcctaacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcaacatgtcatggaatttcagcggctgcaggtaaggctggagctatagtgggagcgtatgggttcttatacgctgcacaaagtaaagatccaaacaaaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctaggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcacttttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="116565" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116865" g_stop="118690" g_length="1826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1826" r_length="1826" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E747634" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116865" e_stop="118690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGATATGACC</genome_strand>
        <mrna_strand>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543803" ref_strand="+" ref_description="SGN-E543803 [TUS-65-M23]">
      <seq>ggaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggccctacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcacatgtcatggaatttcagcggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="117139" stop="118559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117439" g_stop="118259" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E543803" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117439" e_stop="118259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGC</genome_strand>
        <mrna_strand>GGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCCTACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATC-ACATGTCATGGAATTTCAGCGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306582" ref_strand="+" ref_description="SGN-E306582 [cLEX-13-J24]">
      <seq>gaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="117140" stop="118278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117440" g_stop="117978" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E306582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117440" e_stop="117978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGT</genome_strand>
        <mrna_strand>GAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305487" ref_strand="+" ref_description="SGN-E305487 [cLEX-15-D8]">
      <seq>gaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctctctacagtcagaatttgtttcataaggatgtgttctccgacgtcggatggatccctaaagctccaacaatgaacgctgttcatgaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="117217" stop="118290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117517" g_stop="117990" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E305487" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117517" e_stop="117990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCA</genome_strand>
        <mrna_strand>GAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTCTCTACAGTCAGAATTTGTTTCATAAGGATGTGTTCTCCGACGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCATGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548938" ref_strand="+" ref_description="SGN-E548938 [TUS-65-M23](-)">
      <seq>ccacgtgtttttattagatatgctttctacagtcagatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggcctaacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcaacatgtcatggaatttcagcggctgcaggtaaggctggagctatagtgggagcgtatgggttcttatacgctgcacaaagtaaagatccaaacaaaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="117524" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117824" g_stop="118689" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E548938" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117824" e_stop="118689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGATATGAC</genome_strand>
        <mrna_strand>CCACGT-GTTTTTATTAGATAT-GCTTTCTACAGTCAG-ATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308947" ref_strand="+" ref_description="SGN-E308947 [cLEY-23-K9]">
      <seq>ctcgtgccgaattctgcacgaggaacagatgcaggataccgggcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaacggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="118029" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118332" g_stop="118683" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="381" r_length="355" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E308947" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118332" e_stop="118683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGA</genome_strand>
        <mrna_strand>AGATGCAGGATACCGGGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAACGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545038" ref_strand="+" ref_description="SGN-E545038 [TUS-67-K22](-)">
      <seq>cctcgtgccgaattcggcacgaggaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccgaagtgtgttattgtaaaatggttttgctatttatttatattataaacaaaaaaattgtttgtaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="118029" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118332" g_stop="118683" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="383" r_length="356" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E545038" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118332" e_stop="118683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCC-AAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGA</genome_strand>
        <mrna_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCGAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAACAAAAAAATTGTTTGTAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544995" ref_strand="+" ref_description="SGN-E544995 [TUS-67-J21]">
      <seq>cctcgtgccgaattcggcacgaggaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="118029" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118332" g_stop="118683" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="382" r_length="355" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E544995" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118332" e_stop="118683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGA</genome_strand>
        <mrna_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549134" ref_strand="+" ref_description="SGN-E549134 [TUS-67-J21](-)">
      <seq>cctcgtgccgaattcggcacgaggaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0207A03-LmqE2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0207A03.2" temp_strand="+" temp_description="C00HBa0207A03.2  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="118029" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118332" g_stop="118683" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="382" r_length="355" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0207A03.2" gen_strand="+" ref_id="SGN-E549134" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0207A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118332" e_stop="118683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGA</genome_strand>
        <mrna_strand>AGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>249</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="273" PGL_stop="8536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="273" e_stop="373"/>
            <exon e_start="774" e_stop="908"/>
            <exon e_start="994" e_stop="1164"/>
            <exon e_start="1932" e_stop="2084"/>
            <exon e_start="2190" e_stop="2258"/>
            <exon e_start="2355" e_stop="2471"/>
            <exon e_start="3015" e_stop="3089"/>
            <exon e_start="3232" e_stop="3309"/>
            <exon e_start="3387" e_stop="3482"/>
            <exon e_start="3656" e_stop="3705"/>
            <exon e_start="4781" e_stop="4835"/>
            <exon e_start="5107" e_stop="5238"/>
            <exon e_start="6436" e_stop="6483"/>
            <exon e_start="6583" e_stop="6741"/>
            <exon e_start="8130" e_stop="8536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.856" acc_prob="0.536" e_score="0.990"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.310" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="273" e_stop="373" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.856" acc_prob="0.536">
            <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="774" e_stop="908" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="994" e_stop="1164" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.954">
            <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1932" e_stop="2084" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2190" e_stop="2258" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="2355" e_stop="2471" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3015" e_stop="3089" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3232" e_stop="3309" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.310" acc_prob="0.919">
            <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3387" e_stop="3482" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.861" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3656" e_stop="3705" e_length="50"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4835" e_length="55"/>
          </exon>
          <intron i_serial="11" don_prob="0.856" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="5107" e_stop="5238" e_length="132"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.830">
            <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="6436" e_stop="6483" e_length="48"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="6583" e_stop="6741" e_length="159"/>
          </exon>
          <intron i_serial="14" don_prob="0.663" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388"/>
          </intron>
          <exon e_serial="15" e_score="0.978">
            <gDNA_exon_boundary e_start="8130" e_stop="8536" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="273" stop="373"/>
              <exon start="774" stop="908"/>
              <exon start="994" stop="1164"/>
              <exon start="1932" stop="2084"/>
              <exon start="2190" stop="2258"/>
              <exon start="2355" stop="2471"/>
              <exon start="3015" stop="3089"/>
              <exon start="3232" stop="3246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="298" stop="373"/>
              <exon start="774" stop="908"/>
              <exon start="994" stop="1164"/>
              <exon start="1932" stop="2084"/>
              <exon start="2190" stop="2258"/>
              <exon start="2355" stop="2471"/>
              <exon start="3015" stop="3089"/>
              <exon start="3232" stop="3287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="298" stop="373"/>
              <exon start="774" stop="908"/>
              <exon start="994" stop="1164"/>
              <exon start="1932" stop="2084"/>
              <exon start="2190" stop="2258"/>
              <exon start="2355" stop="2471"/>
              <exon start="3015" stop="3089"/>
              <exon start="3232" stop="3275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3041" stop="3089"/>
              <exon start="3232" stop="3309"/>
              <exon start="3387" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3257" stop="3309"/>
              <exon start="3387" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3291" stop="3309"/>
              <exon start="3387" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3414" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3457" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3664" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5140" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5146" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5193" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8172" stop="8536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTTCTCTTCGACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG : AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA : GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG : GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT : GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG : GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG : GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA : ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACT : ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG : GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG : ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG : CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC : GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG : GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG : GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAATAATTACTC</gDNA_template>
            <first_frame> F  F  F  S  S  T  P  *  D  L  A  E  Q  I  C  *  Q  W  R  R  L  Q  L  *  L  Q  V  L  Q  L  S  S  I  R :   K  M  W  V  Y  L  P  S  L  H  K  L  H  F  P  F  K  L  L  G  K  G  Y  P  R  E  L  F  L  *  *  H  L  S  R  L  K  E  N  L  P  Q  L  D  Q :   *  R  L  V  *  L  *  L  R  R  Y  *  L  R  L  L  I  S  L  M  *  A  L  V  I  M  S  G  *  M  L  M  F  *  *  L  M  M  F  V  A  L  A  L  L  E  F  S  R  K  S  L  D  R  M  L  R :   S  G  I  V  K  S  L  S  L  Y  L  T  I  T  Y  S  Q  P  T  N  E  Q  T  V  T  W  I  S  *  G  I  S  A  M  N  K  I  L  S  T  S  M  T  L  K  I  W  G  T  S  V :   L  I  L  I  T  R  V  S  A  T  L  L  L  H  K  K  V  T  A  D  L  E  R :   F  C  W  V  Q  T  P  T  H  V  L  L  E  L  L  G  N  S  P  L  E  L  A  I  L  M  Q  V  L  C  W  V  L  A  R  F  C  S  R :   C  L  Q  L  *  D  L  *  W  M  V  K  C  L  I  T  C  L  L  R  T  *  F  C  K :   L  L  V  K  F  Q  W  L  V  L  L  I  K  Q  W  S  L  L  A  R  Q  L  K  A  *  L :   W  K  K  E  *  H  Y  A  T  W  L  L  K  L  V  E  K  M  V  S  S  Q  L  I  K  Q  H  M  T  T  L  R :   E  G  L  L  C  P  M  N  L  F  I  V  M  K  E  P   : D  I  L  R  S  T  D  L  M  F  P  S  W  S  P  *  W  L  S :   L  I  L  L  I  I  V  L  W  Q  E  N  A  K  M  S  K  S  I  E  Y  I  L  D  L  V  L  V  E  R  Q  R  T  S  W  L  L  Q  K  F  F  *  L  P :   E  R  R  *  R  F  P  L  S  L  F  L  L  P  K  R :   Y  G  W  M  Y  I  A  S  Q  F  Q  D  Q  V  A  K  H  V  P  R  F  L  R  R  Q  V  A  I  H  L  Q  V  L  V  V  V  L  V  W  V  A  L  K  T  L  M  H  A  *  M  K  L  R :   S  V  Y  Q  P  R  I  G  T  S  L  V  E  W  D  T  R  K  A  R  F  I  L  H  L  R  I  Q  L  Q  H  Q  H  *  P  V  M  S  L  I  P  E  S  F  C  S  E  V  P  R  *  P  R  F  R  S  L  D  Y  V  V  H  *  Q  M  S  E  S  *  A  F  D  A  Y  I  F  L  R  K  V  A  L  D  V  F  L  F  F  L  F  T  P  K  K  *  M  L  F  C  I  K  M  R  T  P  *  F  L  I  S  V  F  F  V  V  F  L  E  S  Y  C  *  K  H  *  N  K  N  L  F  L  E  I  I  T  </first_frame>
            <second_frame>  S  S  S  L  R  P  L  K  I  *  Q  N  K  S  V  S  N  G  G  V  F  S  Y  S  F  K  F  Y  N  F  H  Q  *   : E  R  C  G  S  I  C  L  L  F  T  S  F  I  F  R  S  N  C  S  E  K  D  I  Q  E  N  C  F  C  D  D  T  S  A  D  *  K  K  T  C  H  N  W  I   : S  K  D  W  Y  D  Y  D  *  E  D  I  S  *  G  F  *  *  A  *  C  E  P  W  *  *  C  L  G  E  C  *  C  S  D  D  S  *  C  L  W  P  W  L  Y  W  N  F  Q  E  R  V  W  T  E  C  *   : G  L  G  S  *  K  A  C  H  Y  T  *  P  L  H  I  H  N  R  R  T  S  K  P  *  R  G  Y  L  E  G  F  L  Q  *  T  K  Y  *  V  L  L  *  H  *  R  F  G  E  L  P   : C  *  S  *  L  Q  G  C  L  P  R  C  S  C  T  R  R  S  L  Q  T  W  R   : G  F  A  G  Y  R  L  P  H  M  Y  C  W  S  F  W  A  I  R  H  W  N  W  Q  Y  *  C  R  F  C  V  G  Y  W  Q  D  S  A  Q   : G  A  S  N  F  E  I  C  N  G  W  *  N  A  *  L  L  A  C  *  G  L  N  F  A   : N  Y  W  *  N  F  S  G  W  C  Y  L  *  S  N  G  V  C  W  H  D  S  *  K  L  D   : Y  G  R  K  N  D  I  M  Q  H  G  C  *  S  W  W  K  K  W  C  H  P  S  *  *  N  N  I  *  L  P  *   : G  K  D  F  C  A  L  *  T  C  L  *  *  *  R  S  Q  :  I  S  *  G  V  Q  I  *  C  F  Q  V  G  A  L  S  G  *   : A  S  F  S  *  *  S  C  F  G  K  R  M  Q  R  C  Q  N  R  *  S  I  Y  W  I  L  Y  W  W  K  D  R  G  L  H  G  C  C  K  S  F  S  S  F   : R  K  E  G  K  G  S  H  F  P  C  S  C  Y  P  K   : G  M  D  G  C  I  *  P  P  S  S  R  I  R  W  Q  N  M  F  P  D  F  *  G  G  R  L  R  Y  T  C  K  S  *  L  W  C  L  F  G  W  P  *  R  H  L  C  T  H  E  *  S  S   : G  L  C  I  N  H  E  *  E  L  P  W  S  N  G  T  Q  G  R  P  D  L  S  C  I  S  V  Y  S  C  S  I  S  I  D  R  L  C  H  *  S  P  R  V  F  A  V  K  F  L  D  D  L  V  L  G  V  W  I  M  L  Y  T  N  R  *  V  N  L  E  L  L  M  L  I  Y  S  *  E  R  S  R  S  M  C  F  S  F  F  S  L  L  P  R  N  E  C  S  S  A  L  K  *  E  L  L  D  S  *  F  L  S  S  L  L  Y  S  W  S  L  I  V  K  S  I  E  I  R  I  C  F  W  K  *  L  L </second_frame>
            <third_frame>   L  L  L  F  D  P  L  R  F  S  R  T  N  L  L  A  M  A  A  S  S  A  I  A  S  S  S  T  T  F  I  N  K  :  K  D  V  G  L  S  A  F  S  S  Q  A  S  F  S  V  Q  T  A  R  K  R  I  S  K  R  I  V  S  V  M  T  P  Q  Q  T  E  R  K  P  A  T  T  G  S  :  V  K  T  G  M  T  M  T  E  K  I  L  A  K  A  S  D  K  P  D  V  S  P  G  D  N  V  W  V  N  V  D  V  L  M  T  H  D  V  C  G  P  G  S  I  G  I  F  K  K  E  F  G  Q  N  A  K  :  V  W  D  R  E  K  L  V  I  I  P  D  H  Y  I  F  T  T  D  E  R  A  N  R  N  V  D  I  L  R  D  F  C  N  E  Q  N  I  K  Y  F  Y  D  I  K  D  L  G  N  F  R  :  A  N  P  D  Y  K  G  V  C  H  V  A  L  A  Q  E  G  H  C  R  P  G  E  :  V  L  L  G  T  D  S  H  T  C  T  A  G  A  F  G  Q  F  A  T  G  I  G  N  T  D  A  G  F  V  L  G  T  G  K  I  L  L  K  :  V  P  P  T  L  R  F  V  M  D  G  E  M  P  D  Y  L  L  A  K  D  L  I  L  Q  :  I  I  G  E  I  S  V  A  G  A  T  Y  K  A  M  E  F  V  G  T  T  V  E  S  L  T  :  M  E  E  R  M  T  L  C  N  M  V  V  E  A  G  G  K  N  G  V  I  P  A  D  K  T  T  Y  D  Y  L  E  :  G  R  T  S  V  P  Y  E  P  V  Y  S  D  E  G  A  R :   Y  L  K  E  Y  R  F  D  V  S  K  L  E  P  L  V  A  K  :  P  H  S  P  D  N  R  A  L  A  R  E  C  K  D  V  K  I  D  R  V  Y  I  G  S  C  T  G  G  K  T  E  D  F  M  A  A  A  K  V  F  L  A  S  :  G  K  K  V  K  V  P  T  F  L  V  P  A  T  Q  K  :  V  W  M  D  V  Y  S  L  P  V  P  G  S  G  G  K  T  C  S  Q  I  F  E  E  A  G  C  D  T  P  A  S  P  S  C  G  A  C  L  G  G  P  K  D  T  Y  A  R  M  N  E  A  Q  :  V  C  V  S  T  T  N  R  N  F  P  G  R  M  G  H  K  E  G  Q  I  Y  L  A  S  P  Y  T  A  A  A  S  A  L  T  G  Y  V  T  D  P  R  E  F  L  Q  *  S  S  S  M  T  S  F  *  E  F  G  L  C  C  T  L  T  D  E  *  I  L  S  F  *  C  L  Y  I  P  E  K  G  R  A  R  C  V  S  L  F  S  L  Y  S  Q  E  M  N  A  L  L  H  *  N  E  N  S  L  I  P  N  F  C  L  L  C  C  I  L  G  V  L  L  L  K  A  L  K  *  E  F  V  S  G  N  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="275" stop="373"/>
                    <exon start="774" stop="908"/>
                    <exon start="994" stop="1164"/>
                    <exon start="1932" stop="2084"/>
                    <exon start="2190" stop="2258"/>
                    <exon start="2355" stop="2471"/>
                    <exon start="3015" stop="3089"/>
                    <exon start="3232" stop="3309"/>
                    <exon start="3387" stop="3482"/>
                    <exon start="3656" stop="3705"/>
                    <exon start="4781" stop="4835"/>
                    <exon start="5107" stop="5238"/>
                    <exon start="6436" stop="6483"/>
                    <exon start="6583" stop="6741"/>
                    <exon start="8130" stop="8270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLFDPLRFSRTNLLAMAASSAIASSSTTFINKKDVGLSAFSSQASFSVQTARKRISKRIVSVMTPQQTERKPATTGSVKTGMTMTEKILAKASDKPDVSPGDNVWVNVDVLMTHDVCGPGSIGIFKKEFGQNAKVWDREKLVIIPDHYIFTTDERANRNVDILRDFCNEQNIKYFYDIKDLGNFRANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKAMEFVGTTVESLTMEERMTLCNMVVEAGGKNGVIPADKTTYDYLEGRTSVPYEPVYSDEGARYLKEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEAQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4734" e_stop="4835"/>
            <exon e_start="5107" e_stop="5238"/>
            <exon e_start="6436" e_stop="6483"/>
            <exon e_start="6583" e_stop="6741"/>
            <exon e_start="8130" e_stop="8536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.856" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4734" e_stop="4835" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.856" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5107" e_stop="5238" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.830">
            <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6436" e_stop="6483" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6583" e_stop="6741" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.663" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="8130" e_stop="8536" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4734" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4734" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4734" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4734" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4750" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4776" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5140" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5146" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5193" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8172" stop="8536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG : CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC : GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG : GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG : GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAATAATTACTC</gDNA_template>
            <first_frame> N  C  H  V  F  N  I  N  T  S  F  F  C  I  P  R  Y  L  K  E  Y  R  F  D  V  S  K  L  E  P  L  V  A  K  :  P  H  S  P  D  N  R  A  L  A  R  E  C  K  D  V  K  I  D  R  V  Y  I  G  S  C  T  G  G  K  T  E  D  F  M  A  A  A  K  V  F  L  A  S  :  G  K  K  V  K  V  P  T  F  L  V  P  A  T  Q  K  :  V  W  M  D  V  Y  S  L  P  V  P  G  S  G  G  K  T  C  S  Q  I  F  E  E  A  G  C  D  T  P  A  S  P  S  C  G  A  C  L  G  G  P  K  D  T  Y  A  R  M  N  E  A  Q  :  V  C  V  S  T  T  N  R  N  F  P  G  R  M  G  H  K  E  G  Q  I  Y  L  A  S  P  Y  T  A  A  A  S  A  L  T  G  Y  V  T  D  P  R  E  F  L  Q  *  S  S  S  M  T  S  F  *  E  F  G  L  C  C  T  L  T  D  E  *  I  L  S  F  *  C  L  Y  I  P  E  K  G  R  A  R  C  V  S  L  F  S  L  Y  S  Q  E  M  N  A  L  L  H  *  N  E  N  S  L  I  P  N  F  C  L  L  C  C  I  L  G  V  L  L  L  K  A  L  K  *  E  F  V  S  G  N  N  Y   </first_frame>
            <second_frame>  I  A  M  S  S  T  L  T  R  R  F  F  V  Y  P  D  I  L  R  S  T  D  L  M  F  P  S  W  S  P  *  W  L  S :   L  I  L  L  I  I  V  L  W  Q  E  N  A  K  M  S  K  S  I  E  Y  I  L  D  L  V  L  V  E  R  Q  R  T  S  W  L  L  Q  K  F  F  *  L  P :   E  R  R  *  R  F  P  L  S  L  F  L  L  P  K  R :   Y  G  W  M  Y  I  A  S  Q  F  Q  D  Q  V  A  K  H  V  P  R  F  L  R  R  Q  V  A  I  H  L  Q  V  L  V  V  V  L  V  W  V  A  L  K  T  L  M  H  A  *  M  K  L  R :   S  V  Y  Q  P  R  I  G  T  S  L  V  E  W  D  T  R  K  A  R  F  I  L  H  L  R  I  Q  L  Q  H  Q  H  *  P  V  M  S  L  I  P  E  S  F  C  S  E  V  P  R  *  P  R  F  R  S  L  D  Y  V  V  H  *  Q  M  S  E  S  *  A  F  D  A  Y  I  F  L  R  K  V  A  L  D  V  F  L  F  F  L  F  T  P  K  K  *  M  L  F  C  I  K  M  R  T  P  *  F  L  I  S  V  F  F  V  V  F  L  E  S  Y  C  *  K  H  *  N  K  N  L  F  L  E  I  I  T  </second_frame>
            <third_frame>   L  P  C  L  Q  H  *  H  V  V  F  L  Y  T  Q  I  S  *  G  V  Q  I  *  C  F  Q  V  G  A  L  S  G  *   : A  S  F  S  *  *  S  C  F  G  K  R  M  Q  R  C  Q  N  R  *  S  I  Y  W  I  L  Y  W  W  K  D  R  G  L  H  G  C  C  K  S  F  S  S  F   : R  K  E  G  K  G  S  H  F  P  C  S  C  Y  P  K   : G  M  D  G  C  I  *  P  P  S  S  R  I  R  W  Q  N  M  F  P  D  F  *  G  G  R  L  R  Y  T  C  K  S  *  L  W  C  L  F  G  W  P  *  R  H  L  C  T  H  E  *  S  S   : G  L  C  I  N  H  E  *  E  L  P  W  S  N  G  T  Q  G  R  P  D  L  S  C  I  S  V  Y  S  C  S  I  S  I  D  R  L  C  H  *  S  P  R  V  F  A  V  K  F  L  D  D  L  V  L  G  V  W  I  M  L  Y  T  N  R  *  V  N  L  E  L  L  M  L  I  Y  S  *  E  R  S  R  S  M  C  F  S  F  F  S  L  L  P  R  N  E  C  S  S  A  L  K  *  E  L  L  D  S  *  F  L  S  S  L  L  Y  S  W  S  L  I  V  K  S  I  E  I  R  I  C  F  W  K  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4734" stop="4835"/>
                    <exon start="5107" stop="5238"/>
                    <exon start="6436" stop="6483"/>
                    <exon start="6583" stop="6741"/>
                    <exon start="8130" stop="8270"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCHVFNINTSFFCIPRYLKEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEAQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3954" e_stop="4683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3954" e_stop="4683" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3954" stop="4683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3959" stop="4394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTT</gDNA_template>
            <first_frame> I  D  Q  S  F  L  K  I  S  V  Y  V  Q  V  Q  E  Q  G  *  T  K  W  E  I  S  *  *  E  K  F  V  L  L  *  A  L  *  K  *  F  P  H  I  L  E  N  A  V  T  H  F  A  K  T  R  C  L  S  C  H  H  F  L  V  L  K  N  N  Y  L  S  K  V  N  E  L  K  E  G  L  D  V  L  K  I  V  N  I  R  K  Y  Y  *  S  A  I  I  S  Y  S  F  L  V  R  R  *  N  L  V  M  R  F  I  M  *  L  N  N  *  N  L  A  H  D  E  R  L  N  I  L  F  F  *  M  N  F  L  Y  F  S  A  S  C  L  *  *  I  L  N  *  *  T  L  G  D  C  L  L  K  G  L  *  F  F  P  A  R  C  F  S  G  R  G  T  F  V  F  G  *  S  *  L  Q  K  G  L  R  L  V  S  F  Q  D  L  W  D  V  E  V  F  *  *  S  N  S  L  L  S  *  Y  R  C  F  L  Y  P  P  R  L  *  G  F  I  Y  L  M  Q  L  F  H  K  V  V  H  L  *  S  S  S  I  *  P  S  </first_frame>
            <second_frame>  *  T  K  V  F  *  R  Y  Q  Y  M  F  K  S  K  N  K  V  E  R  S  G  K  L  V  D  E  K  N  L  F  Y  Y  K  L  C  R  N  N  F  H  I  S  W  R  M  R  *  H  I  L  P  K  L  D  A  F  L  A  I  I  F  L  Y  *  K  I  I  I  C  P  K  *  M  N  *  R  K  D  *  M  S  *  K  L  S  I  S  E  N  I  I  R  V  Q  L  L  A  I  P  F  W  L  G  D  R  I  L  L  *  G  S  L  C  D  S  I  I  E  I  W  P  M  M  N  V  *  I  F  C  S  F  R  *  I  F  C  T  S  V  L  P  A  C  N  E  F  L  T  D  E  H  W  E  I  V  C  L  K  D  C  N  F  F  Q  Q  G  V  L  V  A  V  E  H  L  Y  L  D  R  A  N  C  R  R  V  *  D  W  F  L  F  K  I  F  G  M  *  K  S  F  S  K  A  I  A  S  F  H  D  I  D  V  F  Y  I  H  P  D  Y  R  V  L  F  I  *  C  S  S  F  I  R  L  C  T  C  S  H  L  P  Y  N  L  L </second_frame>
            <third_frame>   R  P  K  F  S  K  D  I  S  I  C  S  S  P  R  T  R  L  N  E  V  G  N  *  L  M  R  K  I  C  S  T  I  S  F  V  E  I  I  S  T  Y  P  G  E  C  G  D  T  F  C  Q  N  *  M  P  F  L  P  S  F  S  C  T  E  K  *  L  F  V  Q  S  K  *  I  E  G  R  T  R  C  P  E  N  C  Q  Y  Q  K  I  L  L  E  C  N  Y  *  L  F  L  S  G  *  A  I  E  S  C  Y  E  V  H  Y  V  T  Q  *  L  K  S  G  P  *  *  T  S  E  Y  F  V  L  L  D  E  F  F  V  L  Q  C  F  L  L  V  M  N  S  *  L  M  N  I  G  R  L  F  A  *  R  I  V  I  F  S  S  K  V  F  *  W  P  W  N  I  C  I  W  I  E  L  T  A  E  G  S  E  I  G  F  F  S  R  S  L  G  C  R  S  L  L  V  K  Q  *  P  P  F  M  I  S  M  F  S  I  S  T  Q  I  I  G  F  Y  L  F  D  A  A  L  S  *  G  C  A  L  V  V  I  F  H  I  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0207A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10873" PGL_stop="8894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10873" e_stop="10380"/>
            <exon e_start="10193" e_stop="9708"/>
            <exon e_start="9091" e_stop="8894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10873" e_stop="10380" e_length="494"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="10379" i_stop="10194" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="10193" e_stop="9708" e_length="486"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9707" i_stop="9092" i_length="616"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="9091" e_stop="8894" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10873" stop="10380"/>
              <exon start="10193" stop="9942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10466" stop="10380"/>
              <exon start="10193" stop="9708"/>
              <exon start="9091" stop="8894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATTTCATTCGGGGTCTCTAGCGTATTGACCCCGAACTTTTTCATCGTCGTCCATTCTCTGAGAGAGGACGACGAGCAAAACTTCCTCATTAACATTGTGAAATAATGCCACCGATTTCCAAGAACATGGGAACGTCTTTGAAACCGTTCCAGCTCTTGGAAATAAACATCATTTCCGCGCAGGACTTGGAACCCATGTCAAAGAAATTGAAGACCTATGCGGCCGCATGGGTCCATCCTACGCGGAAACTTGCCACGGGTGTTGACGTGAACGGTGGCCATAACCCCACGTGGAATGACAAGTTTGTTTTTCGTGTGGACGAAGAATTTCTCCGTCATGAGAATTCCGCCGTCCACATCGAGATTTACTCCGTCCATTGGTTCCGTGACTCTCTCGTCGGAACGGTTCGTGTCCTTGTCGGAAACCTAATCCCTCCGATTCGCACTCACCTCCGTACTCACCATCATGGAATGCGTTTTGTCGCACTTCAG : ATTCGTCGTCCATCAGGGCGTCCTCAAGGTATATTGAATATTGGTGTATCTTTACTCGATAGCTCGATGAGGAGTATGCCATTATATAGACAAATGAGCACGTCAGCAGTTGCATATCGCGATTTGATGGAAGATCGAAACACACCCCATACACATAACAATGAGATCAAACAGAACAACGATAGTAATGTTGATGTTCCAAAACCTATATTACGTAGAATAAAGAGTGAACGTAGCGAACGTATCGCGTTGGATGATATTTCCATAGGTAATAATAGTTCAATAGTTGCAATTCCTTCAAAAACAAAAGGTGTAGATCATGAGAAAGAGAGTTCAATACTTAGTATTTCATTTGAACCTCCAATTCATATGATGAAAAAAAAGGGAAAAGCAAGTTCTGTTATAAATGGAGCTGAGCTAATAAATGAGAAATCAAAATTAGAAAATAAAAAGATTAAGACAAGTTCTGTTTTAAGTGATTCAATT : GCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCAATTTGTAATTGGTAATATGTCTTCTCTTGGAAAAAGAAAAGTTCCATTTAAA</gDNA_template>
            <first_frame> P  I  S  F  G  V  S  S  V  L  T  P  N  F  F  I  V  V  H  S  L  R  E  D  D  E  Q  N  F  L  I  N  I  V  K  *  C  H  R  F  P  R  T  W  E  R  L  *  N  R  S  S  S  W  K  *  T  S  F  P  R  R  T  W  N  P  C  Q  R  N  *  R  P  M  R  P  H  G  S  I  L  R  G  N  L  P  R  V  L  T  *  T  V  A  I  T  P  R  G  M  T  S  L  F  F  V  W  T  K  N  F  S  V  M  R  I  P  P  S  T  S  R  F  T  P  S  I  G  S  V  T  L  S  S  E  R  F  V  S  L  S  E  T  *  S  L  R  F  A  L  T  S  V  L  T  I  M  E  C  V  L  S  H  F  R :   F  V  V  H  Q  G  V  L  K  V  Y  *  I  L  V  Y  L  Y  S  I  A  R  *  G  V  C  H  Y  I  D  K  *  A  R  Q  Q  L  H  I  A  I  *  W  K  I  E  T  H  P  I  H  I  T  M  R  S  N  R  T  T  I  V  M  L  M  F  Q  N  L  Y  Y  V  E  *  R  V  N  V  A  N  V  S  R  W  M  I  F  P  *  V  I  I  V  Q  *  L  Q  F  L  Q  K  Q  K  V  *  I  M  R  K  R  V  Q  Y  L  V  F  H  L  N  L  Q  F  I  *  *  K  K  R  E  K  Q  V  L  L  *  M  E  L  S  *  *  M  R  N  Q  N  *  K  I  K  R  L  R  Q  V  L  F  *  V  I  Q  L :   Q  E  E  E  Y  *  G  I  R  G  S  F  C  L  G  L  S  F  H  Y  Y  F  L  F  T  I  L  *  L  L  F  Y  L  I  P  L  F  F  L  V  L  K  T  M  Y  I  V  I  N  L  *  L  V  I  C  L  L  L  E  K  E  K  F  H  L   </first_frame>
            <second_frame>  Q  F  H  S  G  S  L  A  Y  *  P  R  T  F  S  S  S  S  I  L  *  E  R  T  T  S  K  T  S  S  L  T  L  *  N  N  A  T  D  F  Q  E  H  G  N  V  F  E  T  V  P  A  L  G  N  K  H  H  F  R  A  G  L  G  T  H  V  K  E  I  E  D  L  C  G  R  M  G  P  S  Y  A  E  T  C  H  G  C  *  R  E  R  W  P  *  P  H  V  E  *  Q  V  C  F  S  C  G  R  R  I  S  P  S  *  E  F  R  R  P  H  R  D  L  L  R  P  L  V  P  *  L  S  R  R  N  G  S  C  P  C  R  K  P  N  P  S  D  S  H  S  P  P  Y  S  P  S  W  N  A  F  C  R  T  S   : D  S  S  S  I  R  A  S  S  R  Y  I  E  Y  W  C  I  F  T  R  *  L  D  E  E  Y  A  I  I  *  T  N  E  H  V  S  S  C  I  S  R  F  D  G  R  S  K  H  T  P  Y  T  *  Q  *  D  Q  T  E  Q  R  *  *  C  *  C  S  K  T  Y  I  T  *  N  K  E  *  T  *  R  T  Y  R  V  G  *  Y  F  H  R  *  *  *  F  N  S  C  N  S  F  K  N  K  R  C  R  S  *  E  R  E  F  N  T  *  Y  F  I  *  T  S  N  S  Y  D  E  K  K  G  K  S  K  F  C  Y  K  W  S  *  A  N  K  *  E  I  K  I  R  K  *  K  D  *  D  K  F  C  F  K  *  F  N   : C  K  K  K  N  I  E  E  L  G  G  L  F  V  *  V  S  L  F  I  I  I  F  Y  L  Q  Y  C  N  Y  Y  S  I  *  F  H  Y  F  F  *  F  S  K  L  C  T  L  L  S  I  C  N  W  *  Y  V  F  S  W  K  K  K  S  S  I  *  </second_frame>
            <third_frame>   N  F  I  R  G  L  *  R  I  D  P  E  L  F  H  R  R  P  F  S  E  R  G  R  R  A  K  L  P  H  *  H  C  E  I  M  P  P  I  S  K  N  M  G  T  S  L  K  P  F  Q  L  L  E  I  N  I  I  S  A  Q  D  L  E  P  M  S  K  K  L  K  T  Y  A  A  A  W  V  H  P  T  R  K  L  A  T  G  V  D  V  N  G  G  H  N  P  T  W  N  D  K  F  V  F  R  V  D  E  E  F  L  R  H  E  N  S  A  V  H  I  E  I  Y  S  V  H  W  F  R  D  S  L  V  G  T  V  R  V  L  V  G  N  L  I  P  P  I  R  T  H  L  R  T  H  H  H  G  M  R  F  V  A  L  Q  :  I  R  R  P  S  G  R  P  Q  G  I  L  N  I  G  V  S  L  L  D  S  S  M  R  S  M  P  L  Y  R  Q  M  S  T  S  A  V  A  Y  R  D  L  M  E  D  R  N  T  P  H  T  H  N  N  E  I  K  Q  N  N  D  S  N  V  D  V  P  K  P  I  L  R  R  I  K  S  E  R  S  E  R  I  A  L  D  D  I  S  I  G  N  N  S  S  I  V  A  I  P  S  K  T  K  G  V  D  H  E  K  E  S  S  I  L  S  I  S  F  E  P  P  I  H  M  M  K  K  K  G  K  A  S  S  V  I  N  G  A  E  L  I  N  E  K  S  K  L  E  N  K  K  I  K  T  S  S  V  L  S  D  S  I  :  A  R  R  R  I  L  R  N  *  G  V  F  L  F  R  S  L  F  S  L  L  F  F  I  Y  N  I  V  I  I  I  L  S  D  S  I  I  F  F  S  S  Q  N  Y  V  H  C  Y  Q  F  V  I  G  N  M  S  S  L  G  K  R  K  V  P  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10778" stop="10380"/>
                    <exon start="10193" stop="9708"/>
                    <exon start="9091" stop="9065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCEIMPPISKNMGTSLKPFQLLEINIISAQDLEPMSKKLKTYAAAWVHPTRKLATGVDVNGGHNPTWNDKFVFRVDEEFLRHENSAVHIEIYSVHWFRDSLVGTVRVLVGNLIPPIRTHLRTHHHGMRFVALQIRRPSGRPQGILNIGVSLLDSSMRSMPLYRQMSTSAVAYRDLMEDRNTPHTHNNEIKQNNDSNVDVPKPILRRIKSERSERIALDDISIGNNSSIVAIPSKTKGVDHEKESSILSISFEPPIHMMKKKGKASSVINGAELINEKSKLENKKIKTSSVLSDSIARRRILRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9453" e_stop="8908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="9453" e_stop="8908" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9453" stop="8908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9453" stop="8946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTAGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCAATTTGTAATTGGTAATATGTCTTCTCTTGGAAAAAGAA</gDNA_template>
            <first_frame> F  S  *  K  R  I  S  I  G  *  Q  E  E  L  S  V  G  W  L  E  H  R  R  E  H  R  G  A  Q  V  E  A  R  E  V  E  E  R  D  P  S  G  T  K  P  R  D  R  F  K  *  L  S  F  D  R  T  S  P  *  K  A  F  E  W  R  E  *  L  V  F  L  L  W  *  Y  L  W  L  *  M  S  M  Y  V  W  E  A  Q  K  E  K  C  *  *  Q  K  V  *  K  P  I  N  C  *  Q  I  M  V  L  K  A  Q  A  Q  L  D  *  A  Q  L  Q  E  E  E  Y  *  G  I  R  G  S  F  C  L  G  L  S  F  H  Y  Y  F  L  F  T  I  L  *  L  L  F  Y  L  I  P  L  F  F  L  V  L  K  T  M  Y  I  V  I  N  L  *  L  V  I  C  L  L  L  E  K  E </first_frame>
            <second_frame>  L  V  E  R  G  Y  L  L  D  D  K  R  S  S  V  L  D  G  W  S  I  D  E  S  T  E  G  L  R  S  K  L  E  R  W  R  N  E  I  P  P  V  Q  N  R  G  T  G  S  S  S  Y  R  S  T  G  R  H  P  R  R  R  S  S  G  G  S  S  L  F  S  C  F  G  N  I  C  G  Y  E  C  Q  C  M  C  G  K  P  K  K  K  S  V  S  N  K  K  Y  K  S  P  S  T  A  S  R  S  W  F  *  K  P  K  P  N  *  I  R  P  N  C  K  K  K  N  I  E  E  L  G  G  L  F  V  *  V  S  L  F  I  I  I  F  Y  L  Q  Y  C  N  Y  Y  S  I  *  F  H  Y  F  F  *  F  S  K  L  C  T  L  L  S  I  C  N  W  *  Y  V  F  S  W  K  K   </second_frame>
            <third_frame>   *  L  K  E  D  I  Y  W  M  T  R  G  A  Q  C  W  M  V  G  A  S  T  R  A  P  R  G  S  G  R  S  S  R  G  G  G  T  R  S  L  R  Y  K  T  E  G  Q  V  Q  V  A  I  V  R  P  D  V  T  L  E  G  V  R  V  E  G  V  A  C  F  L  A  L  V  I  F  V  A  M  N  V  N  V  C  V  G  S  P  K  R  K  V  L  V  T  K  S  I  K  A  H  Q  L  L  A  D  H  G  F  E  S  P  S  P  I  R  L  G  P  I  A  R  R  R  I  L  R  N  *  G  V  F  L  F  R  S  L  F  S  L  L  F  F  I  Y  N  I  V  I  I  I  L  S  D  S  I  I  F  F  S  S  Q  N  Y  V  H  C  Y  Q  F  V  I  G  N  M  S  S  L  G  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9448" stop="9065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKEDIYWMTRGAQCWMVGASTRAPRGSGRSSRGGGTRSLRYKTEGQVQVAIVRPDVTLEGVRVEGVACFLALVIFVAMNVNVCVGSPKRKVLVTKSIKAHQLLADHGFESPSPIRLGPIARRRILRN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9452" stop="9123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVERGYLLDDKRSSVLDGWSIDESTEGLRSKLERWRNEIPPVQNRGTGSSSYRSTGRHPRRRSSGGSSLFSCFGNICGYECQCMCGKPKKKSVSNKKYKSPSTASRSWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14734" PGL_stop="16942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14734" e_stop="14806"/>
            <exon e_start="14997" e_stop="15169"/>
            <exon e_start="15641" e_stop="16299"/>
            <exon e_start="16916" e_stop="16942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.991" e_score="0.959"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.741"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="14734" e_stop="14806" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14807" i_stop="14996" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="14997" e_stop="15169" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="15641" e_stop="16299" e_length="659"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16300" i_stop="16915" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="0.741">
            <gDNA_exon_boundary e_start="16916" e_stop="16942" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14734" stop="14806"/>
              <exon start="14997" stop="15169"/>
              <exon start="15641" stop="16178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14735" stop="14806"/>
              <exon start="14997" stop="15169"/>
              <exon start="15641" stop="15884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15142" stop="15169"/>
              <exon start="15641" stop="16299"/>
              <exon start="16916" stop="16942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATAAGAGTGTGATTCAAGAAAATCCAAATAACCCCTTAGTTTTAAGAAAGTATGCTCAGTTCCTTGATCAG : TGTAAAGGGGACTTGGGAGGAGCTAAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTCATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTG : CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACTATTAAGATTTTCCGTTTCCATATAGATAAATAATAGTTCCAATAGTATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTATGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTATAGCTATACTTAAATCGTTGGAATATAGTGTTCATAGCAACGGTTAGCCGTAGCAAAAAAATACCATTGTCATAGGTCTAATTTCTAGTAGTGTCATTTTAAAATAACTTCAGACATGACGTTTAATATTAAGCTGTTGATAAAACTGTCTGCTGAGTTATGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTTAAGAAAAAATGTTGATTCACAATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGTG : AAAAGACATATATAAAAAAAAATGAAT</gDNA_template>
            <first_frame> L  *  E  C  D  S  R  K  S  K  *  P  L  S  F  K  K  V  C  S  V  P  *  S   : V  *  R  G  L  G  R  S  *  R  I  L  L  A  R  G  I  D  R  C  *  *  W  R  N  Y  F  T  I  C  K  F  Y  M  A  S  S  S  *  P  K  *  S  L  F  S  F  Q  K  S  S  S  S  F  S  R  K  L  :  R  C  T  S  I  I  C  *  V  F  M  G  N  R  G  R  R  R  *  R  *  R  *  R  *  R  V  K  *  L  Q  I  S  I  S  I  F  S  W  S  N  G  Y  S  K  C  L  I  P  Q  Y  Q  V  K  *  V  V  R  G  N  Y  M  V  G  N  R  T  L  T  N  K  V  K  V  *  I  V  N  Q  P  N  Y  *  D  F  P  F  P  Y  R  *  I  I  V  P  I  V  F  F  S  F  Q  K  P  L  S  Y  I  E  I  I  Y  S  Y  G  F  F  G  T  I  S  T  I  E  L  L  K  C  I  A  I  L  K  S  L  E  Y  S  V  H  S  N  G  *  P  *  Q  K  N  T  I  V  I  G  L  I  S  S  S  V  I  L  K  *  L  Q  T  *  R  L  I  L  S  C  *  *  N  C  L  L  S  Y  V  S  L  N  *  S  D  *  N  D  *  G  L  R  K  N  V  D  S  Q  C  K  F  *  C  C  *  Q  A  N  L  N  Y  N  F  M  R  * :   K  D  I  Y  K  K  K  *   </first_frame>
            <second_frame>  Y  K  S  V  I  Q  E  N  P  N  N  P  L  V  L  R  K  Y  A  Q  F  L  D  Q  :  C  K  G  D  L  G  G  A  K  E  Y  Y  S  R  A  V  L  T  D  A  S  D  G  E  I  I  S  Q  Y  A  N  F  I  W  H  L  H  H  D  Q  N  K  A  S  S  H  F  K  R  A  V  Q  A  S  P  G  N  C :   D  V  L  A  S  Y  A  R  F  L  W  E  T  E  E  D  E  D  E  D  E  D  K  D  K  E  S  N  N  Y  K  Y  Q  F  Q  Y  F  H  G  V  M  V  T  P  N  A  *  S  P  N  T  K  *  N  E  W  S  E  G  I  T  W  W  E  I  E  L  S  L  I  R  *  K  F  K  *  L  I  S  R  T  I  K  I  F  R  F  H  I  D  K  *  *  F  Q  *  Y  F  F  P  S  K  N  R  C  H  I  *  R  *  S  I  A  M  V  F  L  V  Q  F  Q  R  L  N  C  *  S  V  *  L  Y  L  N  R  W  N  I  V  F  I  A  T  V  S  R  S  K  K  I  P  L  S  *  V  *  F  L  V  V  S  F  *  N  N  F  R  H  D  V  *  Y  *  A  V  D  K  T  V  C  *  V  M  *  V  *  I  D  Q  T  K  M  T  K  V  *  E  K  M  L  I  H  N  V  N  F  D  V  A  N  K  Q  I  *  I  I  I  L  *  G   : E  K  T  Y  I  K  K  N  E  </second_frame>
            <third_frame>   I  R  V  *  F  K  K  I  Q  I  T  P  *  F  *  E  S  M  L  S  S  L  I  S :   V  K  G  T  W  E  E  L  K  N  T  T  R  A  R  Y  *  Q  M  L  V  M  E  K  L  F  H  N  M  Q  I  L  Y  G  I  F  I  M  T  K  I  K  P  L  L  I  S  K  E  Q  F  K  L  L  Q  E  T   : A  M  Y  *  H  H  M  L  G  F  Y  G  K  Q  R  K  T  K  M  K  M  K  I  K  I  K  S  Q  I  I  T  N  I  N  F  N  I  F  M  E  *  W  L  L  Q  M  L  N  P  P  I  P  S  K  M  S  G  Q  R  E  L  H  G  G  K  S  N  S  H  *  *  G  E  S  L  N  S  *  S  A  E  L  L  R  F  S  V  S  I  *  I  N  N  S  S  N  S  I  F  F  L  P  K  T  V  V  I  Y  R  D  N  L  *  L  W  F  F  W  Y  N  F  N  D  *  I  A  K  V  Y  S  Y  T  *  I  V  G  I  *  C  S  *  Q  R  L  A  V  A  K  K  Y  H  C  H  R  S  N  F  *  *  C  H  F  K  I  T  S  D  M  T  F  N  I  K  L  L  I  K  L  S  A  E  L  C  K  S  E  L  I  R  L  K  *  L  R  F  K  K  K  C  *  F  T  M  *  I  L  M  L  L  T  S  K  F  E  L  *  F  Y  E  V  :  K  R  H  I  *  K  K  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14735" stop="14806"/>
                    <exon start="14997" stop="15169"/>
                    <exon start="15641" stop="15782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKSVIQENPNNPLVLRKYAQFLDQCKGDLGGAKEYYSRAVLTDASDGEIISQYANFIWHLHHDQNKASSHFKRAVQASPGNCDVLASYARFLWETEEDEDEDEDKDKESNNYKYQFQYFHGVMVTPNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17206" PGL_stop="17826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17206" e_stop="17826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="17206" e_stop="17826" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17206" stop="17802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17225" stop="17801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17290" stop="17826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAATACAGCCAAAACCCTACAAATTTTCTCTGCTTCTTCTTCTTCTTCTTCCTCAACAATGGCGCCTATGAGTGGAAAGCCCTTTGCTTTGACCGGATCAAGCAGCAAGAATGACGGCGTTTTAGCTAGGATTTCTCAATCCACCATTGTTACGAAGGGGAAACAAGCAGCTTGTGATGCGACTTATGTGGGGAAAAAGCTTGCGAAGAGTACTGGAAAAGCTGCTTGGCTTGTTGCTACAACGTTTTTGGTTCTGGGTTTGCCGTTGATTATTGTTATGGATCGTGAACAGCAGCTGAATGATCTTGATCTTCAACAAGCAAGTCTTCTTGGTGCTTCCCCTGCTACTACACAGAATTGATTTTGTTAGTGGGTTTGAGAAATTTGTAGAATGGGTTGGGAAAGCTGCAGTTTATTAGTTAAAAAAAGAAGATCTTGATCTTCAATAGAAATTATTTTTCGTTATGTTTGTGTTTTTTTGTTAGTGTTTTGATGATGGATTTCGAGATTGGATCGATGAAATTTGTAGAATGTGTTGGTTGTTTTATTAGATGTTTGGGAAGCTGCAGTGTTTATTAGTGGAAAAAATTTGATCTTGATCTTCAATGGAATTGATTT</gDNA_template>
            <first_frame> P  K  Y  S  Q  N  P  T  N  F  L  C  F  F  F  F  F  F  L  N  N  G  A  Y  E  W  K  A  L  C  F  D  R  I  K  Q  Q  E  *  R  R  F  S  *  D  F  S  I  H  H  C  Y  E  G  E  T  S  S  L  *  C  D  L  C  G  E  K  A  C  E  E  Y  W  K  S  C  L  A  C  C  Y  N  V  F  G  S  G  F  A  V  D  Y  C  Y  G  S  *  T  A  A  E  *  S  *  S  S  T  S  K  S  S  W  C  F  P  C  Y  Y  T  E  L  I  L  L  V  G  L  R  N  L  *  N  G  L  G  K  L  Q  F  I  S  *  K  K  K  I  L  I  F  N  R  N  Y  F  S  L  C  L  C  F  F  V  S  V  L  M  M  D  F  E  I  G  S  M  K  F  V  E  C  V  G  C  F  I  R  C  L  G  S  C  S  V  Y  *  W  K  K  F  D  L  D  L  Q  W  N  *  F </first_frame>
            <second_frame>  P  N  T  A  K  T  L  Q  I  F  S  A  S  S  S  S  S  S  S  T  M  A  P  M  S  G  K  P  F  A  L  T  G  S  S  S  K  N  D  G  V  L  A  R  I  S  Q  S  T  I  V  T  K  G  K  Q  A  A  C  D  A  T  Y  V  G  K  K  L  A  K  S  T  G  K  A  A  W  L  V  A  T  T  F  L  V  L  G  L  P  L  I  I  V  M  D  R  E  Q  Q  L  N  D  L  D  L  Q  Q  A  S  L  L  G  A  S  P  A  T  T  Q  N  *  F  C  *  W  V  *  E  I  C  R  M  G  W  E  S  C  S  L  L  V  K  K  R  R  S  *  S  S  I  E  I  I  F  R  Y  V  C  V  F  L  L  V  F  *  *  W  I  S  R  L  D  R  *  N  L  *  N  V  L  V  V  L  L  D  V  W  E  A  A  V  F  I  S  G  K  N  L  I  L  I  F  N  G  I  D   </second_frame>
            <third_frame>   Q  I  Q  P  K  P  Y  K  F  S  L  L  L  L  L  L  L  P  Q  Q  W  R  L  *  V  E  S  P  L  L  *  P  D  Q  A  A  R  M  T  A  F  *  L  G  F  L  N  P  P  L  L  R  R  G  N  K  Q  L  V  M  R  L  M  W  G  K  S  L  R  R  V  L  E  K  L  L  G  L  L  L  Q  R  F  W  F  W  V  C  R  *  L  L  L  W  I  V  N  S  S  *  M  I  L  I  F  N  K  Q  V  F  L  V  L  P  L  L  L  H  R  I  D  F  V  S  G  F  E  K  F  V  E  W  V  G  K  A  A  V  Y  *  L  K  K  E  D  L  D  L  Q  *  K  L  F  F  V  M  F  V  F  F  C  *  C  F  D  D  G  F  R  D  W  I  D  E  I  C  R  M  C  W  L  F  Y  *  M  F  G  K  L  Q  C  L  L  V  E  K  I  *  S  *  S  S  M  E  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17207" stop="17569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNTAKTLQIFSASSSSSSSTMAPMSGKPFALTGSSSKNDGVLARISQSTIVTKGKQAACDATYVGKKLAKSTGKAAWLVATTFLVLGLPLIIVMDREQQLNDLDLQQASLLGASPATTQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25184" PGL_stop="23470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25184" e_stop="24610"/>
            <exon e_start="23575" e_stop="23470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25184" e_stop="24610" e_length="575"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24609" i_stop="23576" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="23575" e_stop="23470" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25184" stop="24610"/>
              <exon start="23575" stop="23470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAG : GTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTCCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</gDNA_template>
            <first_frame> F  I  H  I  F  T  F  Q  K  L  K  L  E  I  F  I  K  K  I  N  K  Y  K  T  T  M  E  *  S  I  K  N  P  Q  N  E  Y  G  I  K  A  I  L  H  I  L  S  F  L  S  Y  I  Y  H  I  Q  A  N  P  T  S  *  I  *  F  *  L  Y  *  V  D  L  Q  G  L  C  K  A  R  F  I  R  S  I  W  G  L  L  T  S  S  F  F  P  F  W  H  S  C  F  T  V  L  K  V  *  V  L  *  D  *  Y  W  *  W  A  I  Y  N  F  W  S  F  S  V  *  R  *  P  F  *  C  *  L  L  *  M  C  *  W  F  A  N  T  H  R  *  V  M  W  K  *  A  C  C  C  K  N  P  A  L  W  L  L  H  A  L  *  G  C  W  F  P  S  N  L  W  N  G  D  A  V  Q  D  L  *  W  E  K  C  S  R :   *  W  V  *  G  K  K  R  Y  C  F  F  H  I  G  K  W  H  G  *  *  Q  W  L  L  H  D  K  L  S  V  C  L  Y  H </first_frame>
            <second_frame>  S  F  T  F  S  H  F  K  N  S  S  L  K  S  L  *  K  K  *  I  N  T  K  Q  Q  W  N  N  P  S  R  I  H  K  M  S  M  A  S  K  P  F  C  I  F  S  L  F  L  V  I  F  T  I  F  K  L  T  P  Q  A  K  S  D  S  D  Y  T  K  L  I  Y  K  G  C  A  K  Q  D  L  S  D  P  S  G  V  Y  S  Q  A  L  S  S  L  F  G  T  L  V  S  Q  S  S  K  S  K  F  Y  K  T  S  T  G  S  G  Q  S  T  I  S  G  L  F  Q  C  R  G  D  L  S  N  V  D  C  Y  K  C  V  S  G  L  P  I  L  I  D  K  L  C  G  S  K  P  V  A  A  R  I  Q  L  Y  G  C  Y  M  L  Y  E  V  A  G  F  P  Q  I  S  G  M  E  M  L  F  K  T  C  S  G  K  N  A  P   : G  S  G  F  E  E  R  R  D  T  A  F  S  T  L  E  N  G  M  A  S  S  N  G  F  Y  T  T  S  Y  Q  S  V  Y  T   </second_frame>
            <third_frame>   H  S  H  F  H  I  S  K  T  Q  A  *  N  L  Y  K  K  N  K  *  I  Q  N  N  N  G  I  I  H  Q  E  S  T  K  *  V  W  H  Q  S  H  F  A  Y  S  L  F  S  *  L  Y  L  P  Y  S  S  *  P  H  K  L  N  L  I  L  I  I  L  S  *  F  T  R  V  V  Q  S  K  I  Y  Q  I  H  L  G  F  T  H  K  L  F  L  P  F  L  A  L  L  F  H  S  P  Q  S  L  S  S  I  R  L  V  L  V  V  G  N  L  Q  F  L  V  F  F  S  V  E  V  T  F  L  M  L  I  V  I  N  V  L  V  V  C  Q  Y  S  *  I  S  Y  V  E  V  S  L  L  L  Q  E  S  S  F  M  A  V  T  C  S  M  R  L  L  V  S  L  K  S  L  E  W  R  C  C  S  R  L  V  V  G  K  M  L  Q  :  V  V  G  L  R  K  E  E  I  L  L  F  P  H  W  K  M  A  W  L  V  A  M  A  S  T  R  Q  A  I  S  L  F  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25126" stop="24610"/>
                    <exon start="23575" stop="23472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INTKQQWNNPSRIHKMSMASKPFCIFSLFLVIFTIFKLTPQAKSDSDYTKLIYKGCAKQDLSDPSGVYSQALSSLFGTLVSQSSKSKFYKTSTGSGQSTISGLFQCRGDLSNVDCYKCVSGLPILIDKLCGSKPVAARIQLYGCYMLYEVAGFPQISGMEMLFKTCSGKNAPGSGFEERRDTAFSTLENGMASSNGFYTTSYQSVYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32487" PGL_stop="33111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32487" e_stop="33111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32487" e_stop="33111" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32487" stop="33111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32487" stop="33078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32554" stop="32989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATAGGATAATGAAAGTGGAAAATACAACTC</gDNA_template>
            <first_frame> C  *  R  W  I  C  C  W  P  V  S  N  W  S  H  R  I  W  K  S  R  L  W  L  W  W  I  W  R  K  *  W  V  L  W  R  W  C  I  G  R  Y  A  I  R  W  R  L  H  G  Q  W  L  W  R  C  *  W  K  F  T  R  F  W  *  L  W  C  S  A  K  W  T  L  W  W  W  C  P  K  S  A  G  S  T  T  L  I  I  V  V  N  F  I  R  E  V  T  *  *  R  S  R  G  F  H  A  T  D  F  V  P  Q  T  V  S  S  C  C  S  C  K  R  K  A  L  N  G  I  A  L  I  F  V  V  C  S  S  Y  F  *  F  T  T  S  N  C  Q  S  Y  F  P  V  L  S  Y  F  M  F  Y  C  S  F  N  L  A  C  L  W  L  R  F  V  *  *  L  V  L  P  L  V  I  L  S  H  R  H  Y  *  T  S  L  V  G  W  K  T  P  N  R  I  M  K  V  E  N  T  T  </first_frame>
            <second_frame>  A  N  G  G  S  A  A  G  Q  S  P  T  G  A  T  G  Y  G  N  Q  G  Y  G  Y  G  G  Y  G  G  N  D  G  S  Y  G  G  G  A  S  G  D  M  Q  S  G  G  G  Y  M  G  S  G  Y  G  D  A  S  G  N  S  Q  G  S  G  N  Y  G  A  Q  Q  N  G  P  Y  G  G  G  A  P  S  R  Q  A  Q  Q  H  *  S  *  W  S  I  S  S  E  K  S  P  S  N  V  A  E  D  F  T  Q  L  I  S  F  H  R  Q  F  P  L  A  V  L  A  S  V  K  R  L  M  G  L  L  *  F  L  *  F  A  V  L  I  S  S  L  Q  Q  V  I  V  S  L  I  S  L  F  C  H  I  L  C  F  T  V  V  L  I  W  L  A  Y  G  *  G  S  F  N  S  *  F  Y  P  W  *  Y  Y  L  I  A  I  T  K  L  P  *  L  D  G  K  L  Q  I  G  *  *  K  W  K  I  Q  L </second_frame>
            <third_frame>   L  T  V  D  L  L  L  A  S  L  Q  L  E  P  Q  D  M  E  I  K  V  M  A  M  V  D  M  A  E  M  M  G  L  M  E  V  V  H  R  E  I  C  N  Q  V  E  V  T  W  A  V  A  M  A  M  L  V  E  I  H  K  V  L  V  I  M  V  L  S  K  M  D  L  M  V  V  V  P  Q  V  G  R  L  N  N  T  D  H  S  G  Q  F  H  P  R  S  H  L  V  T  *  Q  R  I  S  R  N  *  F  R  S  T  D  S  F  L  L  L  F  L  Q  A  *  S  A  *  W  D  C  F  N  F  C  S  L  Q  F  L  F  L  V  Y  N  K  *  L  S  V  L  F  P  C  F  V  I  F  Y  V  L  L  *  F  *  F  G  L  L  M  V  E  V  R  L  I  V  S  F  T  L  G  D  T  I  S  S  P  L  L  N  F  L  S  W  M  E  N  S  K  *  D  N  E  S  G  K  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32489" stop="32791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVDLLLASLQLEPQDMEIKVMAMVDMAEMMGLMEVVHREICNQVEVTWAVAMAMLVEIHKVLVIMVLSKMDLMVVVPQVGRLNNTDHSGQFHPRSHLVT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32488" stop="32748"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANGGSAAGQSPTGATGYGNQGYGYGGYGGNDGSYGGGASGDMQSGGGYMGSGYGDASGNSQGSGNYGAQQNGPYGGGAPSRQAQQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="34628" PGL_stop="33948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34628" e_stop="33948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="34628" e_stop="33948" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34628" stop="33948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTCAATAGCTTGACACAACTTGAAACCTTGGTGAACTTCAACACGAGCTTGTGCAGAGCTAATGATGTCTCAACACTTTGTAAACTCCATTACCTGGAGGCAAAGGTTGAAAATAATTTCCCCGACTTTGAATCAATCACCAGTTACCTGACTTCAAACAAATGTCCACTACATTGCTCCATTGACATCATAGATTTGAATTGCTCTGCACCCGAACGTAGTACTGTACTAGAAGAATTCTTAGGTTGTGAAGTACTCCAAACCTTGAAATTCAAAGGATTTATTGGACCCCTATTACCATCTCCTAAAATCTCCCCGAATCTCACTCAGTTACGTCTTCATAAGTCTTGTCTTAAACAAGACCCCATGCCAATCTTGGAGAAGCTTCCTAGTTTAGGGATTCTAGGCCTCAATGATGATGCCTATATGGGGAAGGATATGGTCTGTTCAGCTTCAGGTTTCCCTCAGCTCAAATGCTTACAACTCCTCAATTTGTCCGAGCTGCAGAGAATCCATGTGGAAAATACAGCCATGCCTATACTTTCCAACATAGAAATCGACAACTGCCAGAAACTTGATATCAACAGCATTCAACAGTTCCACGCAGTATTGCTTGAAAAAAAACAAACAAGAATCTGATACCTCAAACAATTTTTATCTAGTCCTATTGTAACTTGTT</gDNA_template>
            <first_frame> D  S  I  A  *  H  N  L  K  P  W  *  T  S  T  R  A  C  A  E  L  M  M  S  Q  H  F  V  N  S  I  T  W  R  Q  R  L  K  I  I  S  P  T  L  N  Q  S  P  V  T  *  L  Q  T  N  V  H  Y  I  A  P  L  T  S  *  I  *  I  A  L  H  P  N  V  V  L  Y  *  K  N  S  *  V  V  K  Y  S  K  P  *  N  S  K  D  L  L  D  P  Y  Y  H  L  L  K  S  P  R  I  S  L  S  Y  V  F  I  S  L  V  L  N  K  T  P  C  Q  S  W  R  S  F  L  V  *  G  F  *  A  S  M  M  M  P  I  W  G  R  I  W  S  V  Q  L  Q  V  S  L  S  S  N  A  Y  N  S  S  I  C  P  S  C  R  E  S  M  W  K  I  Q  P  C  L  Y  F  P  T  *  K  S  T  T  A  R  N  L  I  S  T  A  F  N  S  S  T  Q  Y  C  L  K  K  N  K  Q  E  S  D  T  S  N  N  F  Y  L  V  L  L  *  L  V </first_frame>
            <second_frame>  T  Q  *  L  D  T  T  *  N  L  G  E  L  Q  H  E  L  V  Q  S  *  *  C  L  N  T  L  *  T  P  L  P  G  G  K  G  *  K  *  F  P  R  L  *  I  N  H  Q  L  P  D  F  K  Q  M  S  T  T  L  L  H  *  H  H  R  F  E  L  L  C  T  R  T  *  Y  C  T  R  R  I  L  R  L  *  S  T  P  N  L  E  I  Q  R  I  Y  W  T  P  I  T  I  S  *  N  L  P  E  S  H  S  V  T  S  S  *  V  L  S  *  T  R  P  H  A  N  L  G  E  A  S  *  F  R  D  S  R  P  Q  *  *  C  L  Y  G  E  G  Y  G  L  F  S  F  R  F  P  S  A  Q  M  L  T  T  P  Q  F  V  R  A  A  E  N  P  C  G  K  Y  S  H  A  Y  T  F  Q  H  R  N  R  Q  L  P  E  T  *  Y  Q  Q  H  S  T  V  P  R  S  I  A  *  K  K  T  N  K  N  L  I  P  Q  T  I  F  I  *  S  Y  C  N  L   </second_frame>
            <third_frame>   L  N  S  L  T  Q  L  E  T  L  V  N  F  N  T  S  L  C  R  A  N  D  V  S  T  L  C  K  L  H  Y  L  E  A  K  V  E  N  N  F  P  D  F  E  S  I  T  S  Y  L  T  S  N  K  C  P  L  H  C  S  I  D  I  I  D  L  N  C  S  A  P  E  R  S  T  V  L  E  E  F  L  G  C  E  V  L  Q  T  L  K  F  K  G  F  I  G  P  L  L  P  S  P  K  I  S  P  N  L  T  Q  L  R  L  H  K  S  C  L  K  Q  D  P  M  P  I  L  E  K  L  P  S  L  G  I  L  G  L  N  D  D  A  Y  M  G  K  D  M  V  C  S  A  S  G  F  P  Q  L  K  C  L  Q  L  L  N  L  S  E  L  Q  R  I  H  V  E  N  T  A  M  P  I  L  S  N  I  E  I  D  N  C  Q  K  L  D  I  N  S  I  Q  Q  F  H  A  V  L  L  E  K  K  Q  T  R  I  *  Y  L  K  Q  F  L  S  S  P  I  V  T  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34626" stop="33988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNSLTQLETLVNFNTSLCRANDVSTLCKLHYLEAKVENNFPDFESITSYLTSNKCPLHCSIDIIDLNCSAPERSTVLEEFLGCEVLQTLKFKGFIGPLLPSPKISPNLTQLRLHKSCLKQDPMPILEKLPSLGILGLNDDAYMGKDMVCSASGFPQLKCLQLLNLSELQRIHVENTAMPILSNIEIDNCQKLDINSIQQFHAVLLEKKQTRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="35790" PGL_stop="34923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35790" e_stop="35644"/>
            <exon e_start="35519" e_stop="34923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.980"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="35790" e_stop="35644" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="35643" i_stop="35520" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="35519" e_stop="34923" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35790" stop="35644"/>
              <exon start="35519" stop="34923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35790" stop="35644"/>
              <exon start="35519" stop="35204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTACATAACATGAATTCCTTGAACGAGGATGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAG : ATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCATCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTCAAGGTATGGAAAAATTTTGTGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTCTAAAACTATTCTTAGTCTTAGAGTGGTTCTTCTTGGAAACCAGCACACCCCTACTGAAATGCTAAACC</gDNA_template>
            <first_frame> L  *  L  P  E  L  N  M  *  R  N  T  Y  Q  K  N  T  V  S  L  Y  I  T  *  I  P  *  T  R  M  I  V  G  D  C  S  T  W  C  Y  L  T  V  T  G  H  H  H  Q  :  I  G  K  W  L  D  V  V  M  G  Y  Q  G  S  S  S  I  L  H  R  I  K  Q  V  I  N  H  L  S  L  N  T  I  V  Y  F  I  N  K  S  Y  Q  R  N  C  N  H  A  L  F  T  *  V  I  S  *  K  I  N  *  *  I  Q  K  S  C  P  I  Y  G  *  S  K  G  Y  Y  Q  Q  D  K  V  L  L  K  G  I  R  A  *  L  R  D  I  *  K  N  *  N  V  W  A  W  *  S  C  N  Q  R  K  F  Q  R  P  T  N  Y  S  R  L  I  A  L  F  K  V  W  K  N  F  V  S  Q  I  V  K  K  N  V  F  S  K  S  L  I  *  D  E  K  T  V  H  S  H  R  V  T  D  H  V  D  L  *  Y  I  *  V  I  A  Q  L  R  F  L  L  K  F  L  K  L  F  L  V  L  E  W  F  F  L  E  T  S  T  P  L  L  K  C  *  T </first_frame>
            <second_frame>  C  N  Y  P  S  *  I  C  S  E  I  H  I  K  K  T  Q  S  A  C  T  *  H  E  F  L  E  R  G  *  *  L  E  I  V  R  H  G  V  I  S  Q  S  Q  G  I  I  I  R :   *  G  N  G  *  M  L  L  W  V  T  R  A  H  Q  A  S  C  I  V  *  N  K  *  S  I  I  Y  L  *  I  L  L  S  T  L  *  T  R  V  T  K  G  I  A  T  M  L  Y  L  L  R  S  F  P  R  K  S  I  D  R  S  R  K  V  V  P  F  M  D  D  R  R  V  I  I  N  K  T  K  C  C  *  R  A  S  E  H  D  *  E  I  S  E  R  T  R  T  Y  G  R  G  R  A  A  T  R  G  S  S  N  D  Q  Q  I  I  Q  G  L  S  L  C  S  R  Y  G  K  I  L  C  L  K  L  *  R  K  M  F  S  Q  N  H  *  F  K  T  R  K  L  F  T  L  I  E  *  Q  T  T  S  T  C  D  I  S  R  *  S  H  S  *  D  S  S  *  S  F  *  N  Y  S  *  S  *  S  G  S  S  W  K  P  A  H  P  Y  *  N  A  K   </second_frame>
            <third_frame>   V  T  T  R  V  E  Y  V  A  K  Y  I  S  K  K  H  S  Q  P  V  H  N  M  N  S  L  N  E  D  D  S  W  R  L  F  D  M  V  L  S  H  S  H  R  A  S  S  S   : D  R  E  M  V  R  C  C  Y  G  L  P  G  L  I  K  H  L  A  S  Y  K  T  S  D  Q  S  F  I  S  E  Y  Y  C  L  L  Y  K  Q  E  L  P  K  E  L  Q  P  C  F  I  Y  L  G  H  F  L  E  N  Q  L  I  D  P  E  K  L  S  H  L  W  M  I  E  G  L  L  S  T  R  Q  S  V  V  K  G  H  Q  S  M  T  E  R  Y  L  K  E  L  E  R  M  G  V  V  E  L  Q  P  E  E  V  P  T  T  N  K  L  F  K  A  Y  R  F  V  Q  G  M  E  K  F  C  V  S  N  C  E  E  K  C  F  L  K  I  I  D  L  R  R  E  N  C  S  L  S  S  S  D  R  P  R  R  L  V  I  Y  L  G  N  R  T  V  E  I  P  P  K  V  S  K  T  I  L  S  L  R  V  V  L  L  G  N  Q  H  T  P  T  E  M  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35788" stop="35644"/>
                    <exon start="35519" stop="34924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTRVEYVAKYISKKHSQPVHNMNSLNEDDSWRLFDMVLSHSHRASSSDREMVRCCYGLPGLIKHLASYKTSDQSFISEYYCLLYKQELPKELQPCFIYLGHFLENQLIDPEKLSHLWMIEGLLSTRQSVVKGHQSMTERYLKELERMGVVELQPEEVPTTNKLFKAYRFVQGMEKFCVSNCEEKCFLKIIDLRRENCSLSSSDRPRRLVIYLGNRTVEIPPKVSKTILSLRVVLLGNQHTPTEMLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="44105" PGL_stop="43391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44105" e_stop="43391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="44105" e_stop="43391" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44105" stop="43391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCAAGTGGGAAGTTGCAGCTTGATTCAGAAAATTATGGATTCCCTCGGAGGTTAAAGCAGTTAACTTTATCAGGTACGTGGTTGGATTGGGAGGAGATACACAGAGCAGTTGGCCATTTGGAGCTTCTTGAAGTGTTGAAGGTGAAAGAGAATGCATTTAGGGGGGATTCTTGGGAGTTGAAGAAGGATTACGTGTTTCCTTGTCTTAAGGTATTATGGATTGAAAGGTCAGAACTAGTTTGTTGGAAGGGTTGTGATGAGAATTTTCCGAGCTTAGAGAGGCTTGTCCTTCGTAATTTAAATAAGCTTGAGGAAATCCCTATAAACTTTGCCAACATAAGCAACCTGAAAATGATGGAACTGGTGAATACAACCAAATCAACGGTTAAATCTGCCCAGAAAATAGAATCCCAAAGTGTATGTACTGGATTCAAGCTAACCATTTTCCCGCCCGATACATAACTCTCATTGCAACTAATCAAATCTCTTCAGAGGTCAGCCAGTTACTACTTTCTTTTGTCAACTGAATGTCGTCGTGTTTATGTCCTCCTTGCACCCCTTCTTTTGGCTCTCAACTTTCTATATCTGCAACTGAATTGGTGTGCCTATATTCTCCTTTGGTTTTGTCATTTTGTGATTGGGATTAGTGTGCTCTTTCTTTTTCTTTATATATATATATAAAAAAAATTATGTTTCTTATGTATAATGTACTT</gDNA_template>
            <first_frame> *  Q  V  G  S  C  S  L  I  Q  K  I  M  D  S  L  G  G  *  S  S  *  L  Y  Q  V  R  G  W  I  G  R  R  Y  T  E  Q  L  A  I  W  S  F  L  K  C  *  R  *  K  R  M  H  L  G  G  I  L  G  S  *  R  R  I  T  C  F  L  V  L  R  Y  Y  G  L  K  G  Q  N  *  F  V  G  R  V  V  M  R  I  F  R  A  *  R  G  L  S  F  V  I  *  I  S  L  R  K  S  L  *  T  L  P  T  *  A  T  *  K  *  W  N  W  *  I  Q  P  N  Q  R  L  N  L  P  R  K  *  N  P  K  V  Y  V  L  D  S  S  *  P  F  S  R  P  I  H  N  S  H  C  N  *  S  N  L  F  R  G  Q  P  V  T  T  F  F  C  Q  L  N  V  V  V  F  M  S  S  L  H  P  F  F  W  L  S  T  F  Y  I  C  N  *  I  G  V  P  I  F  S  F  G  F  V  I  L  *  L  G  L  V  C  S  F  F  F  F  I  Y  I  Y  K  K  N  Y  V  S  Y  V  *  C  T  </first_frame>
            <second_frame>  S  K  W  E  V  A  A  *  F  R  K  L  W  I  P  S  E  V  K  A  V  N  F  I  R  Y  V  V  G  L  G  G  D  T  Q  S  S  W  P  F  G  A  S  *  S  V  E  G  E  R  E  C  I  *  G  G  F  L  G  V  E  E  G  L  R  V  S  L  S  *  G  I  M  D  *  K  V  R  T  S  L  L  E  G  L  *  *  E  F  S  E  L  R  E  A  C  P  S  *  F  K  *  A  *  G  N  P  Y  K  L  C  Q  H  K  Q  P  E  N  D  G  T  G  E  Y  N  Q  I  N  G  *  I  C  P  E  N  R  I  P  K  C  M  Y  W  I  Q  A  N  H  F  P  A  R  Y  I  T  L  I  A  T  N  Q  I  S  S  E  V  S  Q  L  L  L  S  F  V  N  *  M  S  S  C  L  C  P  P  C  T  P  S  F  G  S  Q  L  S  I  S  A  T  E  L  V  C  L  Y  S  P  L  V  L  S  F  C  D  W  D  *  C  A  L  S  F  S  L  Y  I  Y  I  K  K  I  M  F  L  M  Y  N  V  L </second_frame>
            <third_frame>   A  S  G  K  L  Q  L  D  S  E  N  Y  G  F  P  R  R  L  K  Q  L  T  L  S  G  T  W  L  D  W  E  E  I  H  R  A  V  G  H  L  E  L  L  E  V  L  K  V  K  E  N  A  F  R  G  D  S  W  E  L  K  K  D  Y  V  F  P  C  L  K  V  L  W  I  E  R  S  E  L  V  C  W  K  G  C  D  E  N  F  P  S  L  E  R  L  V  L  R  N  L  N  K  L  E  E  I  P  I  N  F  A  N  I  S  N  L  K  M  M  E  L  V  N  T  T  K  S  T  V  K  S  A  Q  K  I  E  S  Q  S  V  C  T  G  F  K  L  T  I  F  P  P  D  T  *  L  S  L  Q  L  I  K  S  L  Q  R  S  A  S  Y  Y  F  L  L  S  T  E  C  R  R  V  Y  V  L  L  A  P  L  L  L  A  L  N  F  L  Y  L  Q  L  N  W  C  A  Y  I  L  L  W  F  C  H  F  V  I  G  I  S  V  L  F  L  F  L  Y  I  Y  I  *  K  K  L  C  F  L  C  I  M  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44103" stop="43642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASGKLQLDSENYGFPRRLKQLTLSGTWLDWEEIHRAVGHLELLEVLKVKENAFRGDSWELKKDYVFPCLKVLWIERSELVCWKGCDENFPSLERLVLRNLNKLEEIPINFANISNLKMMELVNTTKSTVKSAQKIESQSVCTGFKLTIFPPDT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43641" stop="43423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLQLIKSLQRSASYYFLLSTECRRVYVLLAPLLLALNFLYLQLNWCAYILLWFCHFVIGISVLFLFLYIYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="45041" PGL_stop="44312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45041" e_stop="44312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="45041" e_stop="44312" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44907" stop="44312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCGAAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATACTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</gDNA_template>
            <first_frame> K  L  A  S  Y  I  V  V  L  F  L  K  V  P  R  S  L  L  G  R  *  S  G  C  G  S  R  K  G  S  F  E  K  Q  R  D  Q  K  L  K  V  *  Q  R  V  T  *  M  N  L  S  A  R  A  Y  *  W  *  H  K  G  H  P  M  A  K  *  K  H  S  A  C  M  T  C  Y  M  S  S  V  R  S  K  Q  V  R  K  I  F  S  K  K  *  N  *  V  S  S  N  L  S  P  E  T  R  N  Y  P  H  F  A  A  S  A  L  I  L  L  F  K  N  S  F  L  P  T  R  M  V  M  A  F  V  H  S  S  V  S  P  L  G  T  L  R  C  P  H  M  S  *  R  Q  S  R  N  P  F  H  Y  *  G  F  L  T  L  S  P  Y  Y  L  S  *  R  Q  S  E  N  P  H  S  G  S  S  S  F  S  Y  I  I  *  D  T  L  L  Y  Q  V  T  R  *  R  Y  F  L  N  S  W  R  T  C  G  I  Y  K  P  S  *  F  R  L  N  K  R  H  *  T  *  K  Q  T  Y  V  T  C  H  T  L  G  M  F  T  Q  M  </first_frame>
            <second_frame>  S  L  L  L  I  L  W  C  F  S  *  R  F  R  D  P  C  L  E  D  S  P  V  V  D  R  G  R  V  H  S  R  N  N  G  I  K  N  *  K  C  S  R  G  L  L  E  *  T  C  Q  Q  E  L  T  D  G  N  T  K  D  I  Q  W  P  N  K  N  I  P  R  A  *  H  V  T  *  V  L  Y  A  R  S  K  *  G  K  F  F  Q  R  N  K  T  R  C  R  A  I  F  P  Q  K  P  G  I  I  H  I  S  P  P  Q  H  *  F  F  C  S  R  I  H  F  Y  Q  P  V  W  *  W  H  S  F  I  P  L  F  L  L  S  E  H  C  D  V  P  I  *  V  R  D  N  P  E  I  L  S  T  T  E  G  S  *  H  *  V  H  I  I  *  V  R  D  N  P  K  I  P  I  P  E  A  V  L  S  A  I  S  F  E  I  P  C  Y  I  K  *  L  V  K  D  T  S  *  I  H  G  G  P  V  E  S  T  N  P  H  N  F  D  S  T  R  D  I  E  H  R  S  R  H  M  *  H  A  T  P  *  A  C  S  H  K  C </second_frame>
            <third_frame>   A  C  F  L  Y  C  G  A  F  P  K  G  S  E  I  P  A  W  K  I  V  R  L  W  I  A  E  G  F  I  R  E  T  T  G  S  K  I  E  S  V  A  E  G  Y  L  N  E  L  V  S  K  S  L  L  M  V  T  Q  R  T  S  N  G  Q  I  K  T  F  R  V  H  D  M  L  H  E  F  C  T  L  E  A  S  E  E  N  F  F  K  E  I  K  L  G  V  E  Q  S  F  P  R  N  Q  E  L  S  T  F  R  R  L  S  I  D  S  S  V  Q  E  F  I  S  T  N  P  Y  G  D  G  I  R  S  F  L  C  F  S  S  R  N  I  A  M  S  P  Y  E  L  E  T  I  P  K  S  F  P  L  L  R  V  L  D  I  E  S  I  L  F  E  L  E  T  I  R  K  S  P  F  R  K  Q  F  F  Q  L  Y  H  L  R  Y  L  A  I  S  S  D  S  L  K  I  L  P  K  F  M  E  D  L  W  N  L  Q  T  L  I  I  S  T  Q  Q  E  T  L  N  I  E  A  D  I  C  N  M  P  H  L  R  H  V  H  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45039" stop="44314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACFLYCGAFPKGSEIPAWKIVRLWIAEGFIRETTGSKIESVAEGYLNELVSKSLLMVTQRTSNGQIKTFRVHDMLHEFCTLEASEENFFKEIKLGVEQSFPRNQELSTFRRLSIDSSVQEFISTNPYGDGIRSFLCFSSRNIAMSPYELETIPKSFPLLRVLDIESILFELETIRKSPFRKQFFQLYHLRYLAISSDSLKILPKFMEDLWNLQTLIISTQQETLNIEADICNMPHLRHVHTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="45579" PGL_stop="45080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45579" e_stop="45080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45579" e_stop="45080" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45579" stop="45080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</gDNA_template>
            <first_frame> F  L  K  I  I  N  Q  F  T  R  N  T  E  Q  Y  R  Y  V  T  E  E  A  L  A  E  V  I  R  K  H  L  L  F  G  K  Y  L  I  V  L  D  D  V  W  T  Q  E  P  L  D  D  V  K  I  A  L  P  N  K  M  R  G  K  V  L  F  T  T  R  D  D  E  V  G  K  F  C  C  N  E  P  H  H  I  K  F  L  T  D  H  E  C  W  E  L  L  Q  K  K  V  F  H  K  D  K  C  P  L  D  L  E  V  L  G  K  R  I  A  K  K  C  M  G  L  P  L  A  A  L  V  I  A  G  A  L  T  G  R  G  K  T  K  S  E  W  E  I  V  H  Q  F  V  S  E  H  I  I  S  S  D  I  R  M  T  K  K   </first_frame>
            <second_frame>  F  L  K  S  S  T  N  S  P  E  T  L  N  N  I  D  M  *  L  R  R  L  *  L  K  *  Y  A  N  I  C  C  S  E  S  I  *  L  Y  W  M  M  C  G  H  R  N  L  W  M  M  S  K  L  L  Y  Q  T  R  *  E  V  K  S  C  L  P  L  E  M  T  R  W  E  N  F  V  A  M  N  L  I  I  *  N  S  *  P  T  T  N  V  G  S  Y  Y  R  R  R  F  S  T  R  I  N  V  P  W  T  W  K  Y  S  G  S  A  *  L  R  N  V  W  V  F  L  L  Q  L  W  *  L  R  E  P  *  P  G  E  A  R  L  K  V  S  G  K  *  C  I  N  L  *  V  N  T  L  L  V  V  I  L  G  *  P  R  N  </second_frame>
            <third_frame>   S  *  N  H  Q  P  I  H  Q  K  H  *  T  I  S  I  C  N  *  G  G  S  S  *  S  N  T  Q  T  F  V  V  R  K  V  S  D  C  I  G  *  C  V  D  T  G  T  F  G  *  C  Q  N  C  F  T  K  Q  D  E  R  *  S  L  V  Y  H  S  R  *  R  G  G  K  I  L  L  Q  *  T  S  S  Y  K  I  P  N  R  P  R  M  L  G  A  T  T  E  E  G  F  P  Q  G  *  M  S  P  G  L  G  S  T  R  E  A  H  S  *  E  M  Y  G  S  S  S  C  S  F  G  D  C  G  S  P  N  R  E  R  Q  D  *  K  *  V  G  N  S  A  S  I  C  E  *  T  H  Y  *  *  *  Y  *  D  D  Q  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45579" stop="45082"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKIINQFTRNTEQYRYVTEEALAEVIRKHLLFGKYLIVLDDVWTQEPLDDVKIALPNKMRGKVLFTTRDDEVGKFCCNEPHHIKFLTDHECWELLQKKVFHKDKCPLDLEVLGKRIAKKCMGLPLAALVIAGALTGRGKTKSEWEIVHQFVSEHIISSDIRMTKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="50854" PGL_stop="50079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50854" e_stop="50079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="50854" e_stop="50079" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50854" stop="50079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATATTGCCGATTGGATTTCAGCTCCTCCTGGTCATAAAGAAACAACATATATACCATTTTGAACCAAAACAACATAGTACTAAAGATAGCATTCCGATTAAAAATATACATACCTGGCCAAACCATCTCCTTAAATAACTTCCAGCTGTTTTCTTCAGTTAAAGGCCTCTTTTCATGAATATGAATTGCTTGAGTTATACTTTCTGCTACTTGTCTTGCTCGAGTCGTAATCAGTATGATGCAACCTTTAGCTCCCAGGACAGAACGCAACATCCGCCAATCATCAATTGAGCCTACTCCTTGTAGAACAATCAACGTCCTTGACATTTCAAGATGTTGTCTGACACAATCTTCCAAACTAGTTGTGGACATGTCAACATACTTGTCATCTATACGACTTCCTTCAAACAACTCGAAAACATGTTGAAGTGCGTCATGGGCATTGATGTTTTCAGATAGACGAATATTGACAAGATGAGGATGTCCAAACTCTTTAACAATGCGAGGGTCGTTGTATATTTCATTAACAAGTGTAGCCTTTCCCATGCCACTACGTCCCCATATGGGAACTGCTTGGAAATCGACTTCTGATGATACTTGTGAATTAAGTAACAAAACTTGTATTATCTCCTCTTTTTCGTCCTCCATTCCAACAACAACTGCACCGTCTTCATGGTTGTAAACGAACTTGTTGTTTTGCCTCATCAATTGTTGGTTGTTGTTGGACTTTTGCAATAGAGCAATTCCTTTCATCACCCGACACAAACTCGTGA</gDNA_template>
            <first_frame> P  I  L  P  I  G  F  Q  L  L  L  V  I  K  K  Q  H  I  Y  H  F  E  P  K  Q  H  S  T  K  D  S  I  P  I  K  N  I  H  T  W  P  N  H  L  L  K  *  L  P  A  V  F  F  S  *  R  P  L  F  M  N  M  N  C  L  S  Y  T  F  C  Y  L  S  C  S  S  R  N  Q  Y  D  A  T  F  S  S  Q  D  R  T  Q  H  P  P  I  I  N  *  A  Y  S  L  *  N  N  Q  R  P  *  H  F  K  M  L  S  D  T  I  F  Q  T  S  C  G  H  V  N  I  L  V  I  Y  T  T  S  F  K  Q  L  E  N  M  L  K  C  V  M  G  I  D  V  F  R  *  T  N  I  D  K  M  R  M  S  K  L  F  N  N  A  R  V  V  V  Y  F  I  N  K  C  S  L  S  H  A  T  T  S  P  Y  G  N  C  L  E  I  D  F  *  *  Y  L  *  I  K  *  Q  N  L  Y  Y  L  L  F  F  V  L  H  S  N  N  N  C  T  V  F  M  V  V  N  E  L  V  V  L  P  H  Q  L  L  V  V  V  G  L  L  Q  *  S  N  S  F  H  H  P  T  Q  T  R   </first_frame>
            <second_frame>  Q  Y  C  R  L  D  F  S  S  S  W  S  *  R  N  N  I  Y  T  I  L  N  Q  N  N  I  V  L  K  I  A  F  R  L  K  I  Y  I  P  G  Q  T  I  S  L  N  N  F  Q  L  F  S  S  V  K  G  L  F  S  *  I  *  I  A  *  V  I  L  S  A  T  C  L  A  R  V  V  I  S  M  M  Q  P  L  A  P  R  T  E  R  N  I  R  Q  S  S  I  E  P  T  P  C  R  T  I  N  V  L  D  I  S  R  C  C  L  T  Q  S  S  K  L  V  V  D  M  S  T  Y  L  S  S  I  R  L  P  S  N  N  S  K  T  C  *  S  A  S  W  A  L  M  F  S  D  R  R  I  L  T  R  *  G  C  P  N  S  L  T  M  R  G  S  L  Y  I  S  L  T  S  V  A  F  P  M  P  L  R  P  H  M  G  T  A  W  K  S  T  S  D  D  T  C  E  L  S  N  K  T  C  I  I  S  S  F  S  S  S  I  P  T  T  T  A  P  S  S  W  L  *  T  N  L  L  F  C  L  I  N  C  W  L  L  L  D  F  C  N  R  A  I  P  F  I  T  R  H  K  L  V  </second_frame>
            <third_frame>   N  I  A  D  W  I  S  A  P  P  G  H  K  E  T  T  Y  I  P  F  *  T  K  T  T  *  Y  *  R  *  H  S  D  *  K  Y  T  Y  L  A  K  P  S  P  *  I  T  S  S  C  F  L  Q  L  K  A  S  F  H  E  Y  E  L  L  E  L  Y  F  L  L  L  V  L  L  E  S  *  S  V  *  C  N  L  *  L  P  G  Q  N  A  T  S  A  N  H  Q  L  S  L  L  L  V  E  Q  S  T  S  L  T  F  Q  D  V  V  *  H  N  L  P  N  *  L  W  T  C  Q  H  T  C  H  L  Y  D  F  L  Q  T  T  R  K  H  V  E  V  R  H  G  H  *  C  F  Q  I  D  E  Y  *  Q  D  E  D  V  Q  T  L  *  Q  C  E  G  R  C  I  F  H  *  Q  V  *  P  F  P  C  H  Y  V  P  I  W  E  L  L  G  N  R  L  L  M  I  L  V  N  *  V  T  K  L  V  L  S  P  L  F  R  P  P  F  Q  Q  Q  L  H  R  L  H  G  C  K  R  T  C  C  F  A  S  S  I  V  G  C  C  W  T  F  A  I  E  Q  F  L  S  S  P  D  T  N  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50658" stop="50425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VILSATCLARVVISMMQPLAPRTERNIRQSSIEPTPCRTINVLDISRCCLTQSSKLVVDMSTYLSSIRLPSNNSKTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50373" stop="50170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCPNSLTMRGSLYISLTSVAFPMPLRPHMGTAWKSTSDDTCELSNKTCIISSFSSSIPTTTAPSSWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="52504" PGL_stop="51699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52504" e_stop="51699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52504" e_stop="51699" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="51699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52503" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACTAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCATTGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAGTTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGGAAGATACAAATGTTGCAACCTTGCCATTTTCTGAAACACATTATATGGTATG</gDNA_template>
            <first_frame> L  *  K  K  V  D  A  C  G  C  D  H  I  S  Q  *  P  F  E  *  M  T  Q  A  S  L  S  S  *  I  L  E  E  N  L  E  I  L  N  H  L  G  A  L  L  V  H  C  S  I  Q  F  *  D  E  K  A  L  A  W  L  K  F  L  P  S  I  S  R  M  R  I  I  L  R  V  P  S  V  *  A  L  E  N  P  K  Q  N  I  P  S  D  S  L  *  K  H  H  L  R  A  P  E  A  V  G  C  *  V  F  L  V  L  A  L  D  L  P  P  V  E  C  Y  V  G  Q  S  P  *  N  F  E  R  Y  Q  S  M  V  V  A  F  *  Y  N  P  Q  K  T  L  L  V  E  P  R  N  L  I  S  H  E  R  Q  S  V  L  Y  L  N  N  N  Q  S  F  *  L  Q  G  S  N  D  E  A  P  Y  H  S  Y  F  S  *  S  Q  L  L  N  *  D  P  Q  H  I  L  Q  P  L  H  L  G  S  G  V  F  S  I  *  R  D  G  V  S  H  T  T  W  S  L  S  S  L  V  F  E  A  L  P  I  H  Q  V  G  V  F  S  H  F  A  V  G  I  L  V  E  D  T  N  V  A  T  L  P  F  S  E  T  H  Y  M  V   </first_frame>
            <second_frame>  Y  E  R  R  W  T  L  V  V  V  I  I  S  L  S  N  L  L  S  K  *  L  R  H  L  Y  H  L  E  F  L  K  R  I  *  K  F  *  T  I  W  E  R  Y  *  F  I  A  V  F  N  F  E  M  R  K  H  W  H  G  *  N  F  Y  P  P  F  L  E  *  E  *  S  *  E  F  Q  V  F  E  L  L  K  T  R  S  R  T  Y  H  L  I  H  F  E  S  I  I  F  E  H  Q  K  P  *  V  V  E  F  F  *  C  W  H  W  I  F  L  Q  L  S  A  T  *  D  N  L  R  E  I  L  R  D  I  K  V  W  W  *  R  F  N  I  T  L  K  R  H  Y  W  W  N  P  G  I  *  Y  L  T  K  G  R  V  F  C  I  *  I  T  I  K  V  F  N  F  K  G  A  T  T  K  P  L  I  T  P  T  F  H  K  V  S  Y  *  I  K  I  L  N  T  Y  F  N  L  C  I  *  V  P  E  F  F  Q  F  E  E  M  A  Y  L  T  Q  L  G  V  *  V  L  *  C  L  K  L  C  Q  S  I  K  S  E  F  F  P  I  L  Q  L  E  Y  *  W  K  I  Q  M  L  Q  P  C  H  F  L  K  H  I  I  W  Y  </second_frame>
            <third_frame>   M  K  E  G  G  R  L  W  L  *  S  Y  L  S  V  T  F  *  V  N  D  S  G  I  F  I  I  L  N  S  *  R  E  S  R  N  S  E  P  S  G  S  V  T  S  S  L  Q  Y  S  I  L  R  *  E  S  I  G  M  A  E  I  S  T  L  H  F  S  N  E  N  N  L  E  S  S  K  C  L  S  S  *  K  P  E  A  E  H  T  I  *  F  T  L  K  A  S  S  S  S  T  R  S  R  R  L  L  S  F  S  S  V  G  I  G  S  S  S  S  *  V  L  R  R  T  I  S  V  K  F  *  E  I  S  K  Y  G  G  S  V  L  I  *  P  S  K  D  T  I  G  G  T  P  E  F  N  I  S  R  K  A  E  C  F  V  S  E  *  Q  S  K  F  L  T  S  R  E  Q  R  R  S  P  L  S  L  L  L  F  I  K  S  V  I  K  L  R  S  S  T  H  T  S  T  F  A  S  R  F  R  S  F  F  N  L  K  R  W  R  I  S  H  N  L  E  F  K  F  F  S  V  *  S  S  A  N  P  S  S  R  S  F  F  P  F  C  S  W  N  T  S  G  R  Y  K  C  C  N  L  A  I  F  *  N  T  L  Y  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0207A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="58981" PGL_stop="58613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58981" e_stop="58613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="58981" e_stop="58613" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58981" stop="58613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58980" stop="58613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAGTAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGAAGATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</gDNA_template>
            <first_frame> L  I  H  L  V  P  H  N  D  K  I  I  D  P  N  L  T  S  V  N  I  E  I  N  S  F  Y  Q  P  P  W  V  T  S  Y  F  T  I  L  F  S  F  T  L  F  G  V  I  I  S  I  A  Q  T  I  Y  A  V  L  A  Y  H  K  P  P  S  S  P  T  *  P  C  E  L  V  *  K  F  V  G  K  *  E  D  T  K  I  S  I  *  F  K  L  F  P  M  F  E  H  F  D  K  L  Y  F  F  V  F  C  F  I  Q  T  V  S  Y  P  Y  I  C  Y  *  P </first_frame>
            <second_frame>  L  Y  T  L  F  L  T  M  T  K  *  S  I  Q  I  S  P  L  *  T  S  K  *  T  A  F  T  N  L  L  G  L  Q  A  T  S  P  F  S  S  H  S  H  Y  S  E  *  S  S  L  L  L  R  L  F  T  P  C  *  H  T  T  N  P  H  P  P  L  H  N  R  V  N  *  Y  K  N  L  *  E  N  K  K  I  R  K  S  L  S  N  S  N  F  S  Q  C  L  N  T  L  I  N  C  I  F  L  F  F  V  L  Y  K  Q  C  H  I  H  I  Y  V  I  N   </second_frame>
            <third_frame>   Y  T  P  C  S  S  Q  *  Q  N  N  R  S  K  S  H  L  C  K  H  R  N  K  Q  L  L  P  T  S  L  G  Y  K  L  L  H  H  S  L  L  I  H  T  I  R  S  N  H  L  Y  C  S  D  Y  L  R  R  A  S  I  P  Q  T  P  I  L  P  Y  I  T  V  *  I  S  I  K  I  C  R  K  I  R  R  Y  E  N  L  Y  L  I  Q  T  F  P  N  V  *  T  L  *  *  I  V  F  F  C  F  L  F  Y  T  N  S  V  I  S  I  Y  M  L  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58981" stop="58772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHLVPHNDKIIDPNLTSVNIEINSFYQPPWVTSYFTILFSFTLFGVIISIAQTIYAVLAYHKPPSSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="61513" PGL_stop="63522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61513" e_stop="62191"/>
            <exon e_start="63085" e_stop="63522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="0.980"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="61513" e_stop="62191" e_length="679"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="62192" i_stop="63084" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="63085" e_stop="63522" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61513" stop="61953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61514" stop="61920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61556" stop="61953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61940" stop="62191"/>
              <exon start="63085" stop="63522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63102" stop="63469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTCTTCCGCCTGATATTTCACTGATATTTTAATTAAGAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGACCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAA : ATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTAAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAATTGATG</gDNA_template>
            <first_frame> F  P  L  P  P  D  I  S  L  I  F  *  L  R  K  Q  N  F  S  S  S  P  *  S  T  R  I  F  F  F  E  K  K  N  A  A  S  I  S  P  S  P  N  Y  K  N  S  T  R  *  K  I  R  P  E  *  *  P  N  H  R  R  R  S  R  M  A  I  R  R  S  R  R  T  R  S  G  *  F  S  R  G  S  L  R  D  F  L  H  G  V  *  V  I  A  G  V  W  W  *  D  G  G  N  F  F  V  I  R  R  V  G  *  R  K  W  I  R  V  G  Y  G  F  I  R  S  R  V  T  E  T  D  R  S  R  D  G  D  N  *  *  G  E  N  G  V  G  V  E  D  V  E  E  V  S  V  A  E  K  V  R  W  R  *  W  C  *  W  S  V  F  A  C  W  S  C  E  P  E  N  T  L  G  L  D  H  A  A  G  E  N  A  E  A  I  D  V  R  R  D  Y  E  V  A  D  E  S  V  G  A  E  *  *  *  A  K  E  N  S  Y  E  N  S  R  R  P   : N  W  E  E  S  R  D  N  N  L  T  F  G  A  F  T  P  P  *  T  I  *  I  Q  R  S  S  R  I  P  S  M  A  K  A  S  A  S  Y  P  G  Y  R  P  T  P  S  P  F  Y  P  S  R  K  R  Q  C  I  C  I  A  I  T  R  D  H  S  S  L  *  D  Q  N  N  R  H  *  Q  E  F  R  D  D  E  I  A  K  *  C  S  S  L  L  S  L  E  K  C  *  *  H  S  *  *  Y  M  S  L  G  *  W  I  P  S  Q  H  P  H  L  H  G  S  L  G  I  D  I  *  S  *  R  R  Y  V  S  P  *  *  G  *  *  A  S  *  I  D  </first_frame>
            <second_frame>  S  L  F  R  L  I  F  H  *  Y  F  N  *  E  N  K  T  S  P  R  R  R  N  P  P  A  F  F  F  L  K  K  K  M  P  P  Q  F  H  L  P  Q  T  I  K  T  Q  P  A  K  K  F  D  P  N  D  D  P  I  I  V  V  D  L  V  W  P  F  G  D  L  E  G  L  D  R  D  D  F  R  E  A  A  Y  E  I  F  F  T  A  C  R  S  S  P  G  F  G  G  R  T  V  A  I  S  S  S  S  D  G  S  G  E  G  N  G  S  G  S  G  T  G  L  S  G  P  G  S  P  K  P  T  G  V  G  M  A  I  T  S  R  V  K  T  A  L  G  L  K  M  L  K  K  S  P  S  R  R  K  S  G  G  G  S  G  V  N  G  P  S  S  P  A  G  V  A  S  P  R  T  P  S  G  S  T  M  Q  Q  A  K  M  R  R  P  L  T  S  A  E  I  M  R  L  Q  M  R  V  S  E  Q  S  D  N  R  L  R  K  T  L  M  R  T  L  V  G  Q  :  I  G  R  R  A  E  T  I  I  L  P  L  E  L  L  R  H  L  K  P  S  E  F  N  D  P  Q  E  Y  H  L  W  Q  K  R  Q  L  R  I  L  D  I  G  L  L  L  H  P  S  I  P  V  E  K  D  N  A  S  A  S  R  L  L  E  I  I  Q  A  C  E  I  K  T  I  D  T  S  K  N  S  E  T  M  K  S  L  S  N  A  V  V  S  L  A  W  R  S  V  D  D  T  P  S  D  T  C  R  W  A  D  G  F  P  L  N  I  H  I  Y  T  A  L  L  G  S  I  F  D  L  K  D  D  T  L  V  L  N  E  V  D  E  L  L  E  L  M </second_frame>
            <third_frame>   P  S  S  A  *  Y  F  T  D  I  L  I  K  K  T  K  L  L  L  V  A  V  I  H  P  H  F  F  F  *  K  K  K  C  R  L  N  F  T  F  P  K  L  *  K  L  N  P  L  K  N  S  T  R  M  M  T  Q  S  S  S  S  I  S  Y  G  H  S  E  I  *  K  D  S  I  G  M  I  F  E  R  Q  L  T  R  F  S  S  R  R  V  G  H  R  R  G  L  V  V  G  R  W  Q  F  L  R  H  Q  T  G  R  V  K  E  M  D  P  G  R  V  R  V  Y  P  V  P  G  H  R  N  R  P  E  *  G  W  R  *  L  V  G  *  K  R  R  W  G  *  R  C  *  R  S  L  R  R  G  E  S  P  V  A  V  V  V  L  M  V  R  L  R  L  L  E  L  R  A  R  E  H  P  R  A  R  P  C  S  R  R  K  C  G  G  H  *  R  P  P  R  L  *  G  C  R  *  E  C  R  S  R  V  I  I  G  *  G  K  L  L  *  E  L  S  S  A  K :   L  G  G  E  Q  R  Q  *  S  Y  L  W  S  F  Y  A  T  L  N  H  L  N  S  T  I  L  K  N  T  I  Y  G  K  S  V  S  F  V  S  W  I  *  A  Y  S  F  T  L  L  S  Q  *  K  K  T  M  H  L  H  R  D  Y  *  R  S  F  K  L  V  R  S  K  Q  S  T  L  A  R  I  P  R  R  *  N  R  *  V  M  Q  *  S  P  *  L  G  E  V  L  M  T  L  L  V  I  H  V  V  G  L  M  D  S  L  S  T  S  T  F  T  R  L  S  W  D  R  Y  L  I  L  K  T  I  R  *  S  L  M  R  L  M  S  F  L  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61553" stop="62191"/>
                    <exon start="63085" stop="63522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENKTSPRRRNPPAFFFLKKKMPPQFHLPQTIKTQPAKKFDPNDDPIIVVDLVWPFGDLEGLDRDDFREAAYEIFFTACRSSPGFGGRTVAISSSSDGSGEGNGSGSGTGLSGPGSPKPTGVGMAITSRVKTALGLKMLKKSPSRRKSGGGSGVNGPSSPAGVASPRTPSGSTMQQAKMRRPLTSAEIMRLQMRVSEQSDNRLRKTLMRTLVGQIGRRAETIILPLELLRHLKPSEFNDPQEYHLWQKRQLRILDIGLLLHPSIPVEKDNASASRLLEIIQACEIKTIDTSKNSETMKSLSNAVVSLAWRSVDDTPSDTCRWADGFPLNIHIYTALLGSIFDLKDDTLVLNEVDELLELM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="64477" PGL_stop="65342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64477" e_stop="64496"/>
            <exon e_start="64850" e_stop="65036"/>
            <exon e_start="65119" e_stop="65342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.200" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64477" e_stop="64496" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64497" i_stop="64849" i_length="353"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64850" e_stop="65036" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.200" acc_prob="0.846">
            <gDNA_intron_boundary i_start="65037" i_stop="65118" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65119" e_stop="65342" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64477" stop="64496"/>
              <exon start="64850" stop="65036"/>
              <exon start="65119" stop="65342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGATCAAAAGACTCTGAA : ACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTG : GGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</gDNA_template>
            <first_frame> *  D  Q  K  T  L  K :   H  G  I  Q  N  P  K  V  S  H  M  H  N  Q  Q  L  I  *  *  D  I  P  R  K  Q  *  T  I  S  S  K  F  L  Q  S  L  L  R  I  W  L  M  I  S  L  M  A  S  R  T  Y  S  K  I  M  L  S  L  L  H  H  V  :  G  L  N  R  T  T  C  L  H  F  L  L  *  Q  D  A  A  K  T  Q  N  L  *  R  C  G  R  K  L  P  V  V  S  D  Q  T  I  Q  T  S  I  *  Q  T  K  I  T  I  P  V  L  Q  Q  A  E  E  L  N  A  S  M  *  G  L  T  P  C  I  T  S  F  N  N  S   </first_frame>
            <second_frame>  E  I  K  R  L  *   : N  M  E  S  K  I  Q  K  *  A  I  C  T  I  S  N  *  S  S  E  T  F  Q  G  S  S  R  Q  F  L  R  N  S  Y  N  H  Y  *  E  F  G  *  *  Y  R  *  W  H  R  E  L  I  Q  R  L  C  Y  L  C  C  I  M  W :   G  *  T  E  L  H  A  C  T  S  S  F  D  K  M  R  P  R  L  K  I  C  E  D  V  E  E  S  C  L  *  C  R  I  K  R  S  K  P  A  F  D  R  R  R  *  Q  S  P  S  F  N  K  P  R  N  S  T  P  L  C  K  A  *  H  L  A  L  P  P  S  T  T  Q  </second_frame>
            <third_frame>   R  S  K  D  S  E  :  T  W  N  P  K  S  K  S  E  P  Y  A  Q  S  A  I  D  L  V  R  H  S  K  E  A  V  D  N  F  F  E  I  P  T  I  I  T  E  N  L  V  N  D  I  A  D  G  I  E  N  L  F  K  D  Y  V  I  F  V  A  S  C   : G  A  K  Q  N  Y  M  P  A  L  P  P  L  T  R  C  G  Q  D  S  K  F  V  K  M  W  K  K  A  A  C  S  V  G  S  N  D  P  N  Q  H  L  T  D  E  D  N  N  P  R  P  S  T  S  R  G  T  Q  R  L  Y  V  R  L  N  T  L  H  Y  L  L  Q  Q  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64479" stop="64496"/>
                    <exon start="64850" stop="65036"/>
                    <exon start="65119" stop="65342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSKDSETWNPKSKSEPYAQSAIDLVRHSKEAVDNFFEIPTIITENLVNDIADGIENLFKDYVIFVASCGAKQNYMPALPPLTRCGQDSKFVKMWKKAACSVGSNDPNQHLTDEDNNPRPSTSRGTQRLYVRLNTLHYLLQQLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="65500" PGL_stop="66519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65500" e_stop="66519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="65500" e_stop="66519" e_length="1020"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65500" stop="66140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65501" stop="66065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65869" stop="66519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGGGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGTCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTGGCAAAGAGGAGGGGTTGAAAAACAATTTGATCTAAAAAAAGCCGTCAACTCGGACCCTCTACTGTCGTATCTGTGTCAGATCCTTCTAAAATCACACACCAAACAGTATGTTTGAAGAGTCAGAGCAACATAAGCCTAAAAGACGGAAGAAGAGAGGTTTCACTTGTACATACAAATGAAGAAGAAAGTAAAATTTTCTAAGTATATATGCTATTAATTAAAGTTTATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTATAAAAAAGGTTTGTAACTTTGAACTAAATTTTTTCTAAAGTATATATGCTATGAAAGTGTTCTTTTTTTTTCTTTTTAAAGGATTTGTAAAGTAAAGCCTTCTTGAATATAAAAAAGGTTTGTAAATGAGTATCTTGAGAATATTGTATAATGCTTTTGATCTTTATCTAAATTACTCG</gDNA_template>
            <first_frame> V  *  C  S  S  I  P  T  L  S  S  T  Q  A  Y  T  *  G  T  *  R  M  H  V  F  D  Q  L  *  G  Y  S  N  K  T  *  L  F  C  V  L  S  S  L  T  G  L  K  H  *  R  L  K  K  S  *  E  R  L  S  G  H  T  L  W  F  Y  *  P  V  D  R  E  E  T  S  L  G  W  I  I  K  *  L  R  K  I  L  K  V  *  R  R  Y  F  V  L  V  V  K  V  *  Y  *  K  M  L  W  K  K  K  L  Q  *  L  K  R  *  C  L  *  W  D  N  Q  Q  N  N  W  L  K  I  L  A  I  W  L  V  K  Q  V  E  L  E  L  L  W  E  M  E  K  N  C  L  C  H  Q  Q  Q  E  N  G  I  D  Q  M  L  T  Q  S  *  G  Y  F  V  I  E  M  I  K  L  L  I  I  S  *  R  K  H  S  T  W  Q  R  G  G  V  E  K  Q  F  D  L  K  K  A  V  N  S  D  P  L  L  S  Y  L  C  Q  I  L  L  K  S  H  T  K  Q  Y  V  *  R  V  R  A  T  *  A  *  K  T  E  E  E  R  F  H  L  Y  I  Q  M  K  K  K  V  K  F  S  K  Y  I  C  Y  *  L  K  F  I  F  I  *  R  M  *  I  K  A  F  *  T  I  K  K  V  C  N  F  E  L  N  F  F  *  S  I  Y  A  M  K  V  F  F  F  F  L  F  K  G  F  V  K  *  S  L  L  E  Y  K  K  G  L  *  M  S  I  L  R  I  L  Y  N  A  F  D  L  Y  L  N  Y  S </first_frame>
            <second_frame>  S  N  V  L  R  F  Q  L  C  L  L  R  K  P  I  R  R  G  R  R  E  C  T  Y  S  T  S  S  K  D  T  Q  T  K  P  N  S  F  V  C  Y  P  H  *  P  G  S  S  I  S  A  *  R  S  H  E  S  V  F  R  G  I  P  Y  G  F  T  S  R  W  T  A  K  K  L  L  *  D  G  S  S  N  D  *  G  R  F  *  K  F  K  E  G  I  L  Y  L  W  *  R  F  D  T  R  R  C  C  G  K  R  S  C  N  S  *  R  D  S  V  F  N  G  T  I  N  R  T  I  G  *  R  F  *  Q  F  G  L  *  N  K  W  S  W  S  C  C  G  K  W  R  K  I  A  Y  A  T  N  N  R  K  M  E  *  I  R  C  *  H  N  L  E  G  T  L  S  *  K  *  *  N  C  *  *  F  L  E  E  N  I  P  L  G  K  E  E  G  L  K  N  N  L  I  *  K  K  P  S  T  R  T  L  Y  C  R  I  C  V  R  S  F  *  N  H  T  P  N  S  M  F  E  E  S  E  Q  H  K  P  K  R  R  K  K  R  G  F  T  C  T  Y  K  *  R  R  K  *  N  F  L  S  I  Y  A  I  N  *  S  L  F  L  F  E  G  C  K  L  K  P  S  R  L  *  K  R  F  V  T  L  N  *  I  F  S  K  V  Y  M  L  *  K  C  S  F  F  F  F  L  K  D  L  *  S  K  A  F  L  N  I  K  K  V  C  K  *  V  S  *  E  Y  C  I  M  L  L  I  F  I  *  I  T   </second_frame>
            <third_frame>   L  M  F  F  D  S  N  S  V  F  Y  A  S  L  Y  V  G  D  V  E  N  A  R  I  R  P  A  L  R  I  L  K  Q  N  L  T  L  L  C  A  I  L  T  D  R  A  Q  A  L  A  L  K  E  V  M  R  A  S  F  G  A  Y  L  M  V  L  L  A  G  G  P  R  R  N  F  F  R  M  D  H  Q  M  I  E  E  D  F  E  S  L  K  K  V  F  C  T  C  G  E  G  L  I  L  E  D  V  V  E  K  E  A  A  I  V  E  E  I  V  S  L  M  G  Q  S  T  E  Q  L  V  E  D  F  S  N  L  A  C  E  T  S  G  A  G  V  V  V  G  N  G  E  K  L  P  M  P  P  T  T  G  K  W  N  R  S  D  A  N  T  I  L  R  V  L  C  H  R  N  D  K  I  A  N  N  F  L  K  K  T  F  H  L  A  K  R  R  G  *  K  T  I  *  S  K  K  S  R  Q  L  G  P  S  T  V  V  S  V  S  D  P  S  K  I  T  H  Q  T  V  C  L  K  S  Q  S  N  I  S  L  K  D  G  R  R  E  V  S  L  V  H  T  N  E  E  E  S  K  I  F  *  V  Y  M  L  L  I  K  V  Y  F  Y  L  K  D  V  N  *  S  L  L  D  Y  K  K  G  L  *  L  *  T  K  F  F  L  K  Y  I  C  Y  E  S  V  L  F  F  S  F  *  R  I  C  K  V  K  P  S  *  I  *  K  R  F  V  N  E  Y  L  E  N  I  V  *  C  F  *  S  L  S  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65502" stop="66092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMFFDSNSVFYASLYVGDVENARIRPALRILKQNLTLLCAILTDRAQALALKEVMRASFGAYLMVLLAGGPRRNFFRMDHQMIEEDFESLKKVFCTCGEGLILEDVVEKEAAIVEEIVSLMGQSTEQLVEDFSNLACETSGAGVVVGNGEKLPMPPTTGKWNRSDANTILRVLCHRNDKIANNFLKKTFHLAKRRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="69900" PGL_stop="70942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69900" e_stop="70942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="69900" e_stop="70942" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69900" stop="70465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70153" stop="70942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTATGATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGATTATTTCTTATTGTTTGTTTCGCTTGTTGTATTAAAGACAATACGCATTGTATTCTTTCGAAGAAAAAGTTGTTTGTATCTGAACATACACTCCA</gDNA_template>
            <first_frame> M  L  K  H  E  F  E  N  K  I  Q  Q  C  Q  E  T  A  N  E  F  V  E  T  E  R  R  K  M  E  E  R  M  F  Q  Q  Q  Q  E  F  E  M  L  R  R  R  L  E  E  I  E  S  E  L  W  H  S  R  V  G  S  R  S  T  E  V  E  E  N  S  F  G  K  R  L  L  E  M  Y  S  E  D  A  G  M  V  K  S  M  D  L  D  R  S  I  D  M  D  C  G  K  K  A  E  S  N  I  I  Q  A  M  L  G  Y  P  S  I  T  N  A  R  E  I  E  D  P  S  I  L  L  Q  H  F  T  N  K  S  F  L  S  T  V  F  E  E  E  E  E  G  N  D  S  E  G  D  K  E  N  P  Y  V  E  E  V  Q  K  E  V  I  E  E  K  T  I  C  S  D  N  V  S  R  V  E  D  R  S  D  D  L  S  S  D  N  T  A  P  S  R  K  E  L  I  Q  N  I  F  K  L  C  G  N  S  R  E  L  S  Q  Q  C  I  T  T  P  S  V  P  A  E  K  R  V  K  D  T  E  S  K  S  P  P  V  K  E  I  V  E  N  S  P  I  T  K  N  H  N  F  S  T  E  K  V  N  D  S  K  E  N  F  N  P  N  S  E  L  K  W  E  A  A  S  K  E  N  P  M  I  I  T  T  L  T  D  R  L  V  *  K  T  S  Y  D  G  I  S  C  A  Q  T  I  Y  P  G  L  L  I  L  R  L  F  L  I  V  C  F  A  C  C  I  K  D  N  T  H  C  I  L  S  K  K  K  L  F  V  S  E  H  T  L   </first_frame>
            <second_frame>  C  *  N  M  N  L  K  I  R  S  N  N  V  R  K  Q  Q  M  N  S  *  R  Q  K  G  G  K  W  K  K  E  C  S  N  S  N  K  S  L  K  C  L  E  D  G  W  R  R  L  S  P  S  F  G  I  Q  E  L  A  A  D  Q  L  K  W  R  R  T  A  L  G  K  D  Y  W  R  C  I  L  K  T  R  E  W  *  N  L  W  I  W  I  D  Q  L  I  W  T  V  E  R  K  Q  K  V  T  *  F  R  Q  C  W  A  I  L  A  *  P  M  Q  E  K  L  K  I  L  L  S  Y  C  N  I  S  P  T  N  H  S  *  A  P  C  S  K  R  K  K  K  V  T  T  V  K  G  I  K  R  I  L  T  S  R  R  C  K  K  R  S  L  R  K  R  Q  Y  V  P  T  M  *  V  E  *  K  I  V  P  M  I  S  L  V  T  T  Q  P  L  P  E  K  S  *  F  K  I  Y  S  N  S  A  E  I  L  E  N  S  L  S  N  V  L  L  P  P  Q  C  L  Q  K  R  E  L  K  T  L  N  Q  N  H  L  Q  L  K  K  L  *  R  I  H  L  *  Q  K  I  I  I  S  L  L  R  K  *  M  I  Q  R  R  T  S  T  R  I  Q  S  *  N  G  K  L  H  Q  R  R  I  P  *  L  S  L  H  *  R  I  V  W  F  E  R  Q  V  M  M  G  L  V  V  L  R  L  F  I  L  D  Y  L  S  *  D  Y  F  L  L  F  V  S  L  V  V  L  K  T  I  R  I  V  F  F  R  R  K  S  C  L  Y  L  N  I  H  S  </second_frame>
            <third_frame>   V  E  T  *  I  *  K  *  D  P  T  M  S  G  N  S  K  *  I  R  R  D  R  K  E  E  N  G  R  K  N  V  P  T  A  T  R  V  *  N  A  *  K  T  V  G  G  D  *  V  R  A  L  A  F  K  S  W  Q  Q  I  N  *  S  G  G  E  Q  L  W  E  K  T  T  G  D  V  F  *  R  R  G  N  G  E  I  Y  G  F  G  *  I  N  *  Y  G  L  W  K  E  S  R  K  *  H  N  S  G  N  V  G  L  S  *  H  N  Q  C  K  R  N  *  R  S  F  Y  L  I  A  T  F  H  Q  Q  I  I  L  E  H  R  V  R  R  G  R  R  R  *  R  Q  *  R  G  *  R  E  S  L  R  R  G  G  A  K  R  G  H  *  G  K  D  N  M  F  R  Q  C  K  *  S  R  R  S  F  R  *  S  L  *  *  Q  H  S  P  F  Q  K  R  A  N  S  K  Y  I  Q  T  L  R  K  F  *  R  T  L  S  A  M  Y  Y  Y  P  L  S  A  C  R  K  E  S  *  R  H  *  I  K  I  T  S  S  *  R  N  C  R  E  F  T  Y  N  K  K  S  *  F  L  Y  *  E  S  K  *  F  K  G  E  L  Q  P  E  F  R  V  E  M  G  S  C  I  K  G  E  S  H  D  Y  H  Y  T  N  G  S  F  G  L  K  D  K  L  *  W  D  *  L  C  S  D  Y  L  S  W  I  T  Y  P  E  I  I  S  Y  C  L  F  R  L  L  Y  *  R  Q  Y  A  L  Y  S  F  E  E  K  V  V  C  I  *  T  Y  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69900" stop="70784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLKHEFENKIQQCQETANEFVETERRKMEERMFQQQQEFEMLRRRLEEIESELWHSRVGSRSTEVEENSFGKRLLEMYSEDAGMVKSMDLDRSIDMDCGKKAESNIIQAMLGYPSITNAREIEDPSILLQHFTNKSFLSTVFEEEEEGNDSEGDKENPYVEEVQKEVIEEKTICSDNVSRVEDRSDDLSSDNTAPSRKELIQNIFKLCGNSRELSQQCITTPSVPAEKRVKDTESKSPPVKEIVENSPITKNHNFSTEKVNDSKENFNPNSELKWEAASKENPMIITTLTDRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="78571" PGL_stop="76156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78571" e_stop="78566"/>
            <exon e_start="78456" e_stop="78274"/>
            <exon e_start="78168" e_stop="77574"/>
            <exon e_start="77443" e_stop="77331"/>
            <exon e_start="77221" e_stop="77001"/>
            <exon e_start="76714" e_stop="76156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="0.833"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.997"/>
          <exon-intron don_prob="0.747" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="78571" e_stop="78566" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78565" i_stop="78457" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78456" e_stop="78274" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78273" i_stop="78169" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="78168" e_stop="77574" e_length="595"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77443" e_stop="77331" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.747" acc_prob="0.975">
            <gDNA_intron_boundary i_start="77330" i_stop="77222" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="77221" e_stop="77001" e_length="221"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="76714" e_stop="76156" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78571" stop="78566"/>
              <exon start="78456" stop="78274"/>
              <exon start="78168" stop="77578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77969" stop="77574"/>
              <exon start="77443" stop="77331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77963" stop="77574"/>
              <exon start="77443" stop="77331"/>
              <exon start="77221" stop="77204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77960" stop="77574"/>
              <exon start="77443" stop="77384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77960" stop="77574"/>
              <exon start="77443" stop="77417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77943" stop="77574"/>
              <exon start="77443" stop="77331"/>
              <exon start="77221" stop="77001"/>
              <exon start="76714" stop="76536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77177" stop="77001"/>
              <exon start="76714" stop="76156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77177" stop="77001"/>
              <exon start="76714" stop="76188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77177" stop="77001"/>
              <exon start="76714" stop="76193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77135" stop="77001"/>
              <exon start="76714" stop="76695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAAG : GTGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAAC : ATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC : ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG : GACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG : GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAACGTATTTTAATATTTGATCATTTT</gDNA_template>
            <first_frame> Y  K  :  V  P  I  K  W  P  R  S  R  D  E  V  W  K  L  N  I  P  H  T  H  L  A  N  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  V  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  N  F  T  N  N  N  L  N  D  E  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  S  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  R  E  M  S  T  L  V  E  R  M  C  W  R  I  A  A  K  K  N  Q  T  V  I  W  Q  K  P  L  N  N  D  C  Y  M  E  R  P  P  G  T  Q  P  P  L  C  R  S  D  N  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  E   : H  D  H  K  V  S  G  S  G  L  A  P  W  P  A  R  L  S  S  P  P  P  R  L  A  D  F  G  Y  S  N  E  M  F  E  K  D  T  :  D  T  W  R  E  R  V  D  H  Y  W  S  L  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  L  G  S  F  A  A  S  L  K  D  K  N  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  T  V  F  S  D  A  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  L  R  P  T  G  F  V  I  I  R  D  K  Q  H  I  I  E  F  I  K  K  H  L  S  A  L  H  W  E  A  V  A  S  T  D  S  T  S  D  P  E  Q  D  N  D  E  V  V  F  V  V  Q  K  K  L  W  L  T  S  G  S  I  R  D  T  E  *  I  A  E  F  V  T  H  F  A  N  S  F  S  L  *  A  F  R  V  L  K  K  K  K  M  Y  A  L  N  F  Q  F  E  F  V  F  A  C  Y  L  F  S  F  F  T  P  N  A  F  L  C  K  F  T  N  *  E  T  T  *  C  I  H  R  L  F  F  F  Y  N  *  R  I  L  I  F  D  H  F </first_frame>
            <second_frame>  T  R :   C  Q  L  S  G  Q  E  V  E  M  R  S  G  N  *  T  F  L  I  R  T  L  Q  M  R  N  L  T  R  T  G  W  L  *  R  V  K  R  *  Y  F  L  V  E  A  L  T  F  T  M  E  Q  I  S  T  L  R  *  L  P  T :   C  *  T  L  Q  T  I  T  *  T  M  R  E  G  Y  G  Q  F  L  M  L  V  A  V  W  L  A  L  V  V  I  F  Y  P  L  I  L  *  Q  C  H  W  H  Q  M  M  C  I  R  I  K  Y  S  L  L  *  R  E  E  F  L  H  T  L  V  S  L  E  R  K  D  C  L  I  Q  A  G  H  L  N  F  L  T  V  L  V  V  G  L  I  G  F  K  G  M  E  S  F  S  L  S  S  I  G  Y  L  G  L  E  A  I  L  H  T  H  P  L  K  H  M  H  R  M  K  R  I  *  E  Y  G  E  R  *  V  H  L  L  N  A  C  A  G  E  L  Q  R  K  R  T  K  L  S  F  G  K  N  L  *  T  M  I  V  T  W  K  D  L  L  V  R  S  H  H  S  V  D  L  I  M  I  Q  M  L  S  G  V  *  I  W  R  H  A  *  H  L  I  L  N  :  M  T  T  K  S  V  E  V  D  W  L  L  G  Q  L  D  *  V  V  L  L  P  V  L  L  T  L  G  I  R  M  K  C  L  K  R  T  R :   T  L  G  G  R  G  L  T  I  I  G  V  C  *  V  L  R  F  H  Q  T  P  *  E  I  S  W  T  *  R  L  T  W  G  H  L  L  L  L  *  R  T  K  T  Y  G  S  *  T  L  Y  P  K  M  D  P  T  L  S  R  L  Y  T  T  E  A  *  L  A  Q  H  M  T   : G  V  K  H  S  Q  P  I  P  G  P  M  I  C  S  T  L  G  Q  S  S  L  M  L  R  R  K  V  A  V  V  R  T  C  Y  S  R  L  I  A  Y  *  G  L  Q  V  S  L  S  S  V  I  N  N  I  L  S  N  S  *  R  S  I  Y  Q  H  C  T  G  K  Q  L  H  Q  L  I  P  P  R  I  P  S  R  T  T  M  R  L  F  S  S  C  K  R  N  C  G  S  Q  V  E  A  S  E  I  Q  N  R  *  Q  S  L  *  H  I  L  L  I  H  F  L  S  R  P  L  G  C  *  R  K  K  K  C  M  P  L  I  F  S  L  N  L  Y  L  R  V  I  Y  F  L  F  L  L  P  T  H  F  Y  V  S  L  Q  T  E  R  L  H  N  V  F  I  G  Y  F  F  F  I  I  N  V  F  *  Y  L  I  I   </second_frame>
            <third_frame>   Q   : G  A  N  *  V  A  K  K  *  R  *  G  L  E  I  E  H  S  S  Y  A  P  C  K  *  E  I  *  P  E  L  D  G  C  E  G  *  K  D  S  I  S  W  W  R  H  S  L  S  L  W  S  R  *  V  H  C  A  N  C  Q   : H  A  E  L  Y  K  Q  *  L  E  R  *  G  K  D  T  D  S  F  *  C  W  L  R  C  G  *  L  W  W  L  S  S  I  L  *  Y  Y  S  N  V  I  G  T  K  *  C  A  S  E  S  N  T  V  C  F  R  E  R  N  S  C  I  P  W  C  P  W  N  E  K  T  A  L  S  K  Q  V  I  *  I  F  S  L  F  S  L  *  D  *  L  A  S  K  G  W  N  P  S  P  *  A  R  *  G  T  *  A  W  R  L  F  C  I  L  I  P  *  S  I  C  T  G  *  R  G  F  K  N  M  E  R  D  E  Y  T  C  *  T  H  V  L  E  N  C  S  E  K  E  P  N  C  H  L  A  K  T  S  K  Q  *  L  L  H  G  K  T  S  W  Y  A  A  T  T  L  S  I  *  *  *  S  R  C  C  L  G  C  E  Y  G  G  M  H  N  T  L  F  *  T :   *  P  Q  S  Q  W  K  W  T  G  S  L  A  S  S  I  K  *  S  S  S  P  S  C  *  L  W  V  F  E  *  N  V  *  K  G  H   : G  H  L  E  G  E  G  *  P  L  L  E  S  V  K  F  *  D  F  I  R  H  L  E  K  Y  H  G  H  E  G  *  L  G  V  I  C  C  F  S  E  G  Q  K  R  M  G  H  E  R  C  T  Q  R  W  T  Q  H  S  Q  D  C  I  R  P  R  L  D  W  H  N  T  *  L  :  V  *  S  I  L  N  L  S  Q  D  L  *  F  A  P  R  L  D  S  L  L  *  C  *  E  E  R  L  Q  W  *  G  L  V  T  R  D  *  S  H  T  K  A  Y  R  F  R  Y  H  P  *  *  T  T  Y  Y  R  I  H  K  E  A  F  I  S  I  A  L  G  S  S  C  I  N  *  F  H  L  G  S  R  A  G  Q  R  *  G  C  F  R  R  A  K  E  T  V  A  H  K  W  K  H  Q  R  Y  R  I  D  S  R  V  C  N  T  F  C  *  F  I  F  S  L  G  L  *  G  V  E  E  K  K  N  V  C  P  *  F  S  V  *  I  C  I  C  V  L  F  I  F  F  F  Y  S  Q  R  I  F  M  *  V  Y  K  L  R  D  Y  I  M  Y  S  *  A  I  F  F  L  *  L  T  Y  F  N  I  *  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78571" stop="78566"/>
                    <exon start="78456" stop="78274"/>
                    <exon start="78168" stop="77574"/>
                    <exon start="77443" stop="77331"/>
                    <exon start="77221" stop="77001"/>
                    <exon start="76714" stop="76393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKVPIKWPRSRDEVWKLNIPHTHLANEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIALIANMLNFTNNNLNDEGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSTLVERMCWRIAAKKNQTVIWQKPLNNDCYMERPPGTQPPLCRSDNDPDAVWGVNMEACITPYSEHDHKVSGSGLAPWPARLSSPPPRLADFGYSNEMFEKDTDTWRERVDHYWSLLSSKISSDTLRNIMDMKANLGSFAASLKDKNVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDAEKKGCSGEDLLLEIDRILRPTGFVIIRDKQHIIEFIKKHLSALHWEAVASTDSTSDPEQDNDEVVFVVQKKLWLTSGSIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="80678" PGL_stop="78591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80678" e_stop="80514"/>
            <exon e_start="79319" e_stop="78887"/>
            <exon e_start="78730" e_stop="78591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.784" e_score="0.981"/>
          <exon-intron don_prob="0.942" acc_prob="0.992" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="80678" e_stop="80514" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.784">
            <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="79319" e_stop="78887" e_length="433"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78730" e_stop="78591" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80678" stop="80514"/>
              <exon start="79319" stop="79087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80674" stop="80514"/>
              <exon start="79319" stop="78887"/>
              <exon start="78730" stop="78699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80674" stop="80514"/>
              <exon start="79319" stop="78957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80660" stop="80514"/>
              <exon start="79319" stop="78887"/>
              <exon start="78730" stop="78591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80659" stop="80514"/>
              <exon start="79319" stop="78887"/>
              <exon start="78730" stop="78711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTCTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCT : ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA : GTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</gDNA_template>
            <first_frame> H  S  L  C  P  S  I  Y  S  L  Q  K  N  T  H  T  Q  S  L  S  R  S  L  I  I  F  I  P  F  L  *  Y  F  S  P  H  L  H  L  Q  E  L  I  I  G  F  P  S  H  Y  S  *  F  R  S  :  I  A  S  S  T  L  Q  I  N  F  S  Q  E  S  N  C  L  I  S  L  V  K  I  L  D  F  N  W  C  L  I  *  T  I  M  I  S  K  S  *  S  R  K  E  K  V  K  F  F  H  G  H  K  K  N  P  N  D  A  R  E  I  R  R  S  A  K  E  A  L  V  D  F  C  R  Y  W  D  C  L  G  C  F  P  L  H  V  F  W  I  Q  E  R  W  *  V  C  S  *  V  W  Q  P  F  F  E  E  I  G  I  V  L  F  G  W  G  *  *  L  *  S  Q  Q  Q  A  R  G  E  V  W  T  G  R  W  *  W  W  H  R  P  *  E  F  S   : S  L  *  *  S  T  F  R  I  N  S  V  S  G  Q  T  S  H  L  S  N  E  I  K  V  G  F  V  T  D  G  A  L  *  K  T  L  P  L  A  R  K  T  L  *  L  S </first_frame>
            <second_frame>  T  L  S  V  P  P  F  I  L  C  R  K  T  H  T  H  S  L  S  H  A  L  S  S  Y  S  F  P  F  C  S  I  F  L  H  I  Y  I  S  R  N  S  L  L  G  F  P  L  I  I  P  N  S  D  L :   L  L  P  Q  H  C  R  S  T  F  L  K  S  L  I  V  *  S  P  *  S  R  Y  L  I  L  I  G  A  L  S  R  Q  L  *  F  Q  R  A  E  V  E  K  R  K  L  S  F  S  T  D  T  K  K  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  W  T  F  V  G  I  G  T  V  L  V  V  F  L  Y  M  Y  F  G  S  K  S  G  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  N  S  D  L  S  S  R  Q  E  E  K  F  G  L  E  D  G  D  G  G  I  V  P  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  S  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  Y  N  C   </second_frame>
            <third_frame>   L  S  L  S  L  H  L  F  S  A  E  K  H  T  H  T  V  S  L  T  L  S  H  H  I  H  S  L  F  V  V  F  F  S  T  F  T  S  P  G  T  H  Y  W  V  S  L  S  L  F  L  I  Q  I   : Y  C  F  L  N  I  A  D  Q  L  F  S  R  V  *  L  F  N  L  L  S  Q  D  T  *  F  *  L  V  P  Y  L  D  N  Y  D  F  K  E  L  K  *  K  R  E  S  *  V  F  P  R  T  Q  K  K  P  K  *  C  E  G  D  Q  T  E  R  K  R  S  A  C  G  L  L  *  V  L  G  L  S  W  L  F  S  F  T  C  I  L  D  P  R  A  V  V  S  L  L  L  S  M  A  A  V  L  *  G  N  W  D  R  L  I  W  V  G  M  I  T  L  I  S  A  A  G  K  R  R  S  L  D  W  K  M  V  M  V  A  S  S  L  R  V  F  Q :   F  V  M  I  D  I  Q  N  *  F  R  V  W  T  D  I  S  F  I  K  *  D  *  S  W  I  C  H  *  W  S  T  M  K  D  I  A  P  C  Q  K  D  V  I  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79213" stop="78887"/>
                    <exon start="78730" stop="78593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQRAEVEKRKLSFSTDTKKTQMMRGRSDGAQKKRLWTFVGIGTVLVVFLYMYFGSKSGGESALEYGSRSLRKLGSSYLGGDDNSDLSSRQEEKFGLEDGDGGIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYERHCPLPERRYNC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80677" stop="80514"/>
                    <exon start="79319" stop="79268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSVPPFILCRKTHTHSLSHALSSYSFPFCSIFLHIYISRNSLLGFPLIIPNSDLLLPQHCRSTFLKSLIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="93471" PGL_stop="101173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93471" e_stop="93855"/>
            <exon e_start="94552" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93471" e_stop="93855" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94552" e_stop="94817" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="95917" e_stop="96457" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93483" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93485" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93494" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93498" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93501" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93507" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93511" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93518" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93526" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93529" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93540" stop="93855"/>
              <exon start="94552" stop="94805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93543" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93547" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93550" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93553" stop="93855"/>
              <exon start="94552" stop="94602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93570" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93597" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93613" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93684" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93702" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93707" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93720" stop="93855"/>
              <exon start="94552" stop="94760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93721" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93761" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93764" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93767" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93772" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93774" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93788" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93794" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93829" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93833" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94556" stop="94817"/>
              <exon start="95141" stop="95298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94567" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94817"/>
              <exon start="95141" stop="95578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94613" stop="94817"/>
              <exon start="95141" stop="95195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94614" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94624" stop="94817"/>
              <exon start="95141" stop="95400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94652" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94654" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94691" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94706" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94723" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94732" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94735" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94736" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94746" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94787" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95272" stop="95623"/>
              <exon start="95917" stop="96420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95289" stop="95623"/>
              <exon start="95917" stop="96457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95292" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95623"/>
              <exon start="95917" stop="96411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95623"/>
              <exon start="95917" stop="96415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95416" stop="95623"/>
              <exon start="95917" stop="96421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95438" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG : GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATT</gDNA_template>
            <first_frame> H  Q  Q  Q  R  R  V  I  K  I  I  *  K  K  M  A  S  K  S  S  F  L  C  F  F  F  C  F  L  V  V  C  Q  I  S  F  A  Q  I  F  E  R  Q  Q  I  W  Q  R  L  Q  H  Q  Q  Q  H  R  A  L  R  S  K  T  E  C  Q  I  E  R  L  N  A  Q  E  P  N  R  R  F  E  S  E  A  G  V  V  E  F  W  D  A  T  Q  E  Q  F  E  C  A  G  V  Q  A  V  R  H  E  I  R  R  N  G  L  L  L  P  Y  Y  S  N  T  P  Q  L  I  Y  I  V  Q   : G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W  R  S  I  Y  L  L  S  E  S  R  N  I  F  D  </first_frame>
            <second_frame>  I  N  N  K  E  E  *  L  K  L  Y  K  K  K  W  L  L  S  P  L  S  Y  V  F  S  F  V  F  L  L  F  A  R  S  A  S  L  K  F  L  S  D  N  R  S  G  K  G  C  S  I  S  S  S  I  G  H  L  G  L  K  P  S  A  R  *  S  V  *  T  L  K  N  Q  T  V  G  L  S  P  R  R  V  L  L  S  S  G  M  L  P  K  N  S  L  S  A  P  E  F  R  P  L  G  M  K  S  G  A  T  G  F  C  C  L  T  I  A  T  L  P  N  S  S  I  L  S  K  :  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  V  Q  F  I  F  *  V  N  R  E  I  Y  L  I </second_frame>
            <third_frame>   S  T  T  K  K  S  N  *  N  Y  I  K  K  N  G  F  *  V  L  F  P  M  F  F  L  L  F  S  C  C  L  P  D  Q  L  R  S  N  F  *  A  T  T  D  L  A  K  A  A  A  S  A  A  A  S  G  T  *  V  *  N  R  V  P  D  R  A  F  E  R  S  R  T  K  P  *  V  *  V  R  G  G  C  C  *  V  L  G  C  Y  P  R  T  V  *  V  R  R  S  S  G  R  *  A  *  N  P  A  Q  R  A  F  V  A  L  L  *  Q  H  S  P  T  H  L  Y  C  P  R :   K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A  F  N  L  S  F  E  *  I  E  K  Y  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93507" stop="93855"/>
                    <exon start="94552" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMASKSSFLCFFFCFLVVCQISFAQIFERQQIWQRLQHQQQHRALRSKTECQIERLNAQEPNRRFESEAGVVEFWDATQEQFECAGVQAVRHEIRRNGLLLPYYSNTPQLIYIVQGSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93471" e_stop="93855"/>
            <exon e_start="94552" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96420"/>
            <exon e_start="98018" e_stop="98036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93471" e_stop="93855" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94552" e_stop="94817" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95917" e_stop="96420" e_length="504"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96421" i_stop="98017" i_length="1597"/>
          </intron>
          <exon e_serial="5" e_score="0.895">
            <gDNA_exon_boundary e_start="98018" e_stop="98036" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93483" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93485" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93494" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93498" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93501" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93507" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93511" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93518" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93526" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93529" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93540" stop="93855"/>
              <exon start="94552" stop="94805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93543" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93547" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93550" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93553" stop="93855"/>
              <exon start="94552" stop="94602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93570" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93597" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93613" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93684" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93702" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93707" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93720" stop="93855"/>
              <exon start="94552" stop="94760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93721" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93761" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93764" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93767" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93772" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93774" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93788" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93794" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93829" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93833" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94556" stop="94817"/>
              <exon start="95141" stop="95298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94567" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94817"/>
              <exon start="95141" stop="95578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94613" stop="94817"/>
              <exon start="95141" stop="95195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94614" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94624" stop="94817"/>
              <exon start="95141" stop="95400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94652" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94654" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94691" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94706" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94723" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94732" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94735" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94736" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94746" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94787" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95272" stop="95623"/>
              <exon start="95917" stop="96420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95292" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95623"/>
              <exon start="95917" stop="96411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95623"/>
              <exon start="95917" stop="96415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95438" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96051" stop="96420"/>
              <exon start="98018" stop="98036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG : GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCA : AAAAAAAAAAAAGGCAAAA</gDNA_template>
            <first_frame> H  Q  Q  Q  R  R  V  I  K  I  I  *  K  K  M  A  S  K  S  S  F  L  C  F  F  F  C  F  L  V  V  C  Q  I  S  F  A  Q  I  F  E  R  Q  Q  I  W  Q  R  L  Q  H  Q  Q  Q  H  R  A  L  R  S  K  T  E  C  Q  I  E  R  L  N  A  Q  E  P  N  R  R  F  E  S  E  A  G  V  V  E  F  W  D  A  T  Q  E  Q  F  E  C  A  G  V  Q  A  V  R  H  E  I  R  R  N  G  L  L  L  P  Y  Y  S  N  T  P  Q  L  I  Y  I  V  Q   : G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W  R  S  :  K  K  K  K  G  K  </first_frame>
            <second_frame>  I  N  N  K  E  E  *  L  K  L  Y  K  K  K  W  L  L  S  P  L  S  Y  V  F  S  F  V  F  L  L  F  A  R  S  A  S  L  K  F  L  S  D  N  R  S  G  K  G  C  S  I  S  S  S  I  G  H  L  G  L  K  P  S  A  R  *  S  V  *  T  L  K  N  Q  T  V  G  L  S  P  R  R  V  L  L  S  S  G  M  L  P  K  N  S  L  S  A  P  E  F  R  P  L  G  M  K  S  G  A  T  G  F  C  C  L  T  I  A  T  L  P  N  S  S  I  L  S  K  :  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  V  Q :   K  K  K  K  A  K </second_frame>
            <third_frame>   S  T  T  K  K  S  N  *  N  Y  I  K  K  N  G  F  *  V  L  F  P  M  F  F  L  L  F  S  C  C  L  P  D  Q  L  R  S  N  F  *  A  T  T  D  L  A  K  A  A  A  S  A  A  A  S  G  T  *  V  *  N  R  V  P  D  R  A  F  E  R  S  R  T  K  P  *  V  *  V  R  G  G  C  C  *  V  L  G  C  Y  P  R  T  V  *  V  R  R  S  S  G  R  *  A  *  N  P  A  Q  R  A  F  V  A  L  L  *  Q  H  S  P  T  H  L  Y  C  P  R :   K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A  F   : K  K  K  K  R  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93507" stop="93855"/>
                    <exon start="94552" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMASKSSFLCFFFCFLVVCQISFAQIFERQQIWQRLQHQQQHRALRSKTECQIERLNAQEPNRRFESEAGVVEFWDATQEQFECAGVQAVRHEIRRNGLLLPYYSNTPQLIYIVQGSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93471" e_stop="93855"/>
            <exon e_start="94552" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96415"/>
            <exon e_start="96710" e_stop="96744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.657"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93471" e_stop="93855" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94552" e_stop="94817" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95917" e_stop="96415" e_length="499"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96416" i_stop="96709" i_length="294"/>
          </intron>
          <exon e_serial="5" e_score="0.657">
            <gDNA_exon_boundary e_start="96710" e_stop="96744" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93483" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93485" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93494" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93498" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93501" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93507" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93511" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93518" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93526" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93529" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93540" stop="93855"/>
              <exon start="94552" stop="94805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93543" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93547" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93550" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93553" stop="93855"/>
              <exon start="94552" stop="94602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93570" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93597" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93613" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93684" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93702" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93707" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93720" stop="93855"/>
              <exon start="94552" stop="94760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93721" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93761" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93764" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93767" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93772" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93774" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93788" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93794" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93829" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93833" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94556" stop="94817"/>
              <exon start="95141" stop="95298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94567" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94817"/>
              <exon start="95141" stop="95578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94613" stop="94817"/>
              <exon start="95141" stop="95195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94614" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94624" stop="94817"/>
              <exon start="95141" stop="95400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94652" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94654" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94691" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94706" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94723" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94732" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94735" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94736" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94746" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94787" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95623"/>
              <exon start="95917" stop="96411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95623"/>
              <exon start="95917" stop="96415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96204" stop="96415"/>
              <exon start="96710" stop="96744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG : GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGC : TTCAAATATCAAAATAAATAAAATAATAAAAGAAT</gDNA_template>
            <first_frame> H  Q  Q  Q  R  R  V  I  K  I  I  *  K  K  M  A  S  K  S  S  F  L  C  F  F  F  C  F  L  V  V  C  Q  I  S  F  A  Q  I  F  E  R  Q  Q  I  W  Q  R  L  Q  H  Q  Q  Q  H  R  A  L  R  S  K  T  E  C  Q  I  E  R  L  N  A  Q  E  P  N  R  R  F  E  S  E  A  G  V  V  E  F  W  D  A  T  Q  E  Q  F  E  C  A  G  V  Q  A  V  R  H  E  I  R  R  N  G  L  L  L  P  Y  Y  S  N  T  P  Q  L  I  Y  I  V  Q   : G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W   : L  Q  I  S  K  *  I  K  *  *  K  N </first_frame>
            <second_frame>  I  N  N  K  E  E  *  L  K  L  Y  K  K  K  W  L  L  S  P  L  S  Y  V  F  S  F  V  F  L  L  F  A  R  S  A  S  L  K  F  L  S  D  N  R  S  G  K  G  C  S  I  S  S  S  I  G  H  L  G  L  K  P  S  A  R  *  S  V  *  T  L  K  N  Q  T  V  G  L  S  P  R  R  V  L  L  S  S  G  M  L  P  K  N  S  L  S  A  P  E  F  R  P  L  G  M  K  S  G  A  T  G  F  C  C  L  T  I  A  T  L  P  N  S  S  I  L  S  K  :  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  :  F  K  Y  Q  N  K  *  N  N  K  R   </second_frame>
            <third_frame>   S  T  T  K  K  S  N  *  N  Y  I  K  K  N  G  F  *  V  L  F  P  M  F  F  L  L  F  S  C  C  L  P  D  Q  L  R  S  N  F  *  A  T  T  D  L  A  K  A  A  A  S  A  A  A  S  G  T  *  V  *  N  R  V  P  D  R  A  F  E  R  S  R  T  K  P  *  V  *  V  R  G  G  C  C  *  V  L  G  C  Y  P  R  T  V  *  V  R  R  S  S  G  R  *  A  *  N  P  A  Q  R  A  F  V  A  L  L  *  Q  H  S  P  T  H  L  Y  C  P  R :   K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A :   S  N  I  K  I  N  K  I  I  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93507" stop="93855"/>
                    <exon start="94552" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMASKSSFLCFFFCFLVVCQISFAQIFERQQIWQRLQHQQQHRALRSKTECQIERLNAQEPNRRFESEAGVVEFWDATQEQFECAGVQAVRHEIRRNGLLLPYYSNTPQLIYIVQGSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93471" e_stop="93855"/>
            <exon e_start="94552" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96405"/>
            <exon e_start="96718" e_stop="96743"/>
            <exon e_start="100633" e_stop="100657"/>
            <exon e_start="101018" e_stop="101061"/>
            <exon e_start="101113" e_stop="101173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.769"/>
          <exon-intron don_prob="0.000" acc_prob="0.737" e_score="0.760"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.523"/>
          <exon-only e_score="0.475"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93471" e_stop="93855" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94552" e_stop="94817" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95917" e_stop="96405" e_length="489"/>
          </exon>
          <intron i_serial="4" don_prob="0.697" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96406" i_stop="96717" i_length="312"/>
          </intron>
          <exon e_serial="5" e_score="0.769">
            <gDNA_exon_boundary e_start="96718" e_stop="96743" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96744" i_stop="100632" i_length="3889"/>
          </intron>
          <exon e_serial="6" e_score="0.760">
            <gDNA_exon_boundary e_start="100633" e_stop="100657" e_length="25"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.737">
            <gDNA_intron_boundary i_start="100658" i_stop="101017" i_length="360"/>
          </intron>
          <exon e_serial="7" e_score="0.523">
            <gDNA_exon_boundary e_start="101018" e_stop="101061" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101062" i_stop="101112" i_length="51"/>
          </intron>
          <exon e_serial="8" e_score="0.475">
            <gDNA_exon_boundary e_start="101113" e_stop="101173" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93471" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93855"/>
              <exon start="94552" stop="94807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93483" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93484" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93485" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93491" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93493" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93494" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93495" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93496" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93498" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93501" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93507" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93511" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93518" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93526" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93529" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93538" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93540" stop="93855"/>
              <exon start="94552" stop="94805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93543" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93547" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93550" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93553" stop="93855"/>
              <exon start="94552" stop="94602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93570" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93597" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93613" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93684" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93702" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93707" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93720" stop="93855"/>
              <exon start="94552" stop="94760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93721" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93751" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93761" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93764" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93767" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93772" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93774" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93788" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93794" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93810" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93829" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93833" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94556" stop="94817"/>
              <exon start="95141" stop="95298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94567" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94817"/>
              <exon start="95141" stop="95578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94613" stop="94817"/>
              <exon start="95141" stop="95195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94614" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94624" stop="94817"/>
              <exon start="95141" stop="95400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94652" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94654" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94691" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94706" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94723" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94732" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94735" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94736" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94746" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94787" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95620" stop="95623"/>
              <exon start="95917" stop="96405"/>
              <exon start="96718" stop="96743"/>
              <exon start="100633" stop="100657"/>
              <exon start="101018" stop="101061"/>
              <exon start="101113" stop="101173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG : GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAG : TCAAAATAAATAAAATAATAAAAGAA : AATAAAATGAAAAAAATAATAATAA : ATAAAAAAAATTAAAAATGGATTAAATAACAGGCCATCGCGAAG : CCAACCCAAACCATCTATAAATTTAGGAAAAATTACATAAATTAGTACATTTTAATAAATA</gDNA_template>
            <first_frame> H  Q  Q  Q  R  R  V  I  K  I  I  *  K  K  M  A  S  K  S  S  F  L  C  F  F  F  C  F  L  V  V  C  Q  I  S  F  A  Q  I  F  E  R  Q  Q  I  W  Q  R  L  Q  H  Q  Q  Q  H  R  A  L  R  S  K  T  E  C  Q  I  E  R  L  N  A  Q  E  P  N  R  R  F  E  S  E  A  G  V  V  E  F  W  D  A  T  Q  E  Q  F  E  C  A  G  V  Q  A  V  R  H  E  I  R  R  N  G  L  L  L  P  Y  Y  S  N  T  P  Q  L  I  Y  I  V  Q   : G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  :  S  K  *  I  K  *  *  K  K :   I  K  *  K  K  *  *  *  :  I  K  K  I  K  N  G  L  N  N  R  P  S  R  S :   Q  P  K  P  S  I  N  L  G  K  I  T  *  I  S  T  F  *  *  I </first_frame>
            <second_frame>  I  N  N  K  E  E  *  L  K  L  Y  K  K  K  W  L  L  S  P  L  S  Y  V  F  S  F  V  F  L  L  F  A  R  S  A  S  L  K  F  L  S  D  N  R  S  G  K  G  C  S  I  S  S  S  I  G  H  L  G  L  K  P  S  A  R  *  S  V  *  T  L  K  N  Q  T  V  G  L  S  P  R  R  V  L  L  S  S  G  M  L  P  K  N  S  L  S  A  P  E  F  R  P  L  G  M  K  S  G  A  T  G  F  C  C  L  T  I  A  T  L  P  N  S  S  I  L  S  K  :  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  S :   Q  N  K  *  N  N  K  R   : K  *  N  E  K  N  N  N  K :   *  K  K  L  K  M  D  *  I  T  G  H  R  E   : A  N  P  N  H  L  *  I  *  E  K  L  H  K  L  V  H  F  N  K   </second_frame>
            <third_frame>   S  T  T  K  K  S  N  *  N  Y  I  K  K  N  G  F  *  V  L  F  P  M  F  F  L  L  F  S  C  C  L  P  D  Q  L  R  S  N  F  *  A  T  T  D  L  A  K  A  A  A  S  A  A  A  S  G  T  *  V  *  N  R  V  P  D  R  A  F  E  R  S  R  T  K  P  *  V  *  V  R  G  G  C  C  *  V  L  G  C  Y  P  R  T  V  *  V  R  R  S  S  G  R  *  A  *  N  P  A  Q  R  A  F  V  A  L  L  *  Q  H  S  P  T  H  L  Y  C  P  R :   K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K   : V  K  I  N  K  I  I  K  E  :  N  K  M  K  K  I  I  I   : N  K  K  N  *  K  W  I  K  *  Q  A  I  A  K  :  P  T  Q  T  I  Y  K  F  R  K  N  Y  I  N  *  Y  I  L  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93507" stop="93855"/>
                    <exon start="94552" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMASKSSFLCFFFCFLVVCQISFAQIFERQQIWQRLQHQQQHRALRSKTECQIERLNAQEPNRRFESEAGVVEFWDATQEQFECAGVQAVRHEIRRNGLLLPYYSNTPQLIYIVQGSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="94549" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94549" e_stop="94817" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="95917" e_stop="96457" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94549" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94556" stop="94817"/>
              <exon start="95141" stop="95298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94567" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94817"/>
              <exon start="95141" stop="95578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94613" stop="94817"/>
              <exon start="95141" stop="95195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94614" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94624" stop="94817"/>
              <exon start="95141" stop="95400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94652" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94654" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94691" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94706" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94723" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94732" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94733" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94735" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94736" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="95973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94746" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94773" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94787" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95272" stop="95623"/>
              <exon start="95917" stop="96420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95289" stop="95623"/>
              <exon start="95917" stop="96457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95292" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95623"/>
              <exon start="95917" stop="96411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95623"/>
              <exon start="95917" stop="96415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95416" stop="95623"/>
              <exon start="95917" stop="96421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95438" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATT</gDNA_template>
            <first_frame> *  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  V  Q  F  I  F  *  V  N  R  E  I  Y  L  I </first_frame>
            <second_frame>  R  K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A  F  N  L  S  F  E  *  I  E  K  Y  I  *   </second_frame>
            <third_frame>   G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W  R  S  I  Y  L  L  S  E  S  R  N  I  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94551" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="95133" e_stop="95623"/>
            <exon e_start="95917" e_stop="96457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.998"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95133" e_stop="95623" e_length="491"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="95917" e_stop="96457" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95133" stop="95623"/>
              <exon start="95917" stop="96273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95139" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95143" stop="95623"/>
              <exon start="95917" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95177" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95192" stop="95623"/>
              <exon start="95917" stop="96396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95200" stop="95623"/>
              <exon start="95917" stop="96337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95202" stop="95623"/>
              <exon start="95917" stop="96191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95205" stop="95623"/>
              <exon start="95917" stop="96357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95623"/>
              <exon start="95917" stop="96280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95245" stop="95623"/>
              <exon start="95917" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95250" stop="95623"/>
              <exon start="95917" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95259" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95272" stop="95623"/>
              <exon start="95917" stop="96420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95289" stop="95623"/>
              <exon start="95917" stop="96457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95291" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95292" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95623"/>
              <exon start="95917" stop="96411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95339" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95371" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95391" stop="95623"/>
              <exon start="95917" stop="96400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95623"/>
              <exon start="95917" stop="96415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95416" stop="95623"/>
              <exon start="95917" stop="96421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95423" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95434" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95438" stop="95623"/>
              <exon start="95917" stop="96418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95441" stop="95623"/>
              <exon start="95917" stop="96240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95519" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95557" stop="95623"/>
              <exon start="95917" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95920" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96083" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATT</gDNA_template>
            <first_frame> F  A  R  N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  V  Q  F  I  F  *  V  N  R  E  I  Y  L  I </first_frame>
            <second_frame>  L  P  E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A  F  N  L  S  F  E  *  I  E  K  Y  I  *   </second_frame>
            <third_frame>   C  Q  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W  R  S  I  Y  L  L  S  E  S  R  N  I  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95135" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="98748" PGL_stop="96550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98748" e_stop="98473"/>
            <exon e_start="98009" e_stop="97880"/>
            <exon e_start="97336" e_stop="96550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.913"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="98748" e_stop="98473" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="98009" e_stop="97880" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="97336" e_stop="96550" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98748" stop="98473"/>
              <exon start="98009" stop="97880"/>
              <exon start="97336" stop="97023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98747" stop="98473"/>
              <exon start="98009" stop="97880"/>
              <exon start="97336" stop="97090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98721" stop="98473"/>
              <exon start="98009" stop="97880"/>
              <exon start="97336" stop="97181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98695" stop="98473"/>
              <exon start="98009" stop="97888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97222" stop="96550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTG : GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAG : ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTCTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTTGACCATTAAATATGGGGAGGACCACCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTACCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGACTTAATGTATGAAAAAAAAATTAAATCTATTGATCGGTCAT</gDNA_template>
            <first_frame> F  L  S  T  E  T  E  E  *  D  F  *  *  F  L  S  H  T  K  I  W  R  K  K  K  D  I  E  R  S  *  S  Y  F  F  *  S  V  *  K  K  T  I  E  K  K  E  K  W  T  E  H  L  L  V  R  K  R  A  *  R  K  G  H  G  I  T  K  K  T  K  F  S  S  L  T  L  T  K  M  A  M  A  I  G  A  H  S  L  D  K  L  :  D  Y  *  D  V  E  K  V  A  D  *  G  G  *  I  I  *  V  H  I  L  R  G  E  I  S  P  K  K  K  K  I  I  S  S  I  Y  M  K  F  L  E  I   : D  G  Q  Q  *  Q  Q  D  Y  R  E  E  R  I  M  K  *  K  I  F  G  T  P  T  *  R  K  G  *  K  I  V  S  L  L  E  A  S  K  D  T  K  K  L  I  K  *  I  I  A  C  M  L  L  T  H  Q  K  Y  R  L  A  R  R  Q  S  *  Q  P  I  H  H  Q  V  V  L  S  I  R  R  S  T  I  K  *  *  L  N  K  K  K  W  T  H  R  S  I  S  P  R  S  M  R  A  S  G  R  M  N  *  R  *  R  T  I  S  T  L  L  L  I  W  M  V  K  N  L  K  A  *  T  C  L  I  V  Q  Q  *  W  R  M  T  L  T  W  T  F  C  S  T  F  S  *  R  L  R  N  F  Q  N  Y  Q  N  F  E  G  S  I  L  G  F  I  I  N  L  E  Y  D  K  L  E  N  F  Y  V  F  F  S  *  P  L  N  M  G  R  T  T  K  F  F  Y  Y  F  I  Y  F  D  I  *  T  S  L  F  L  V  L  T  Y  S  I  K  L  P  L  M  S  R  *  W  E  I  H  Y  W  H  V  K  *  C  *  L  Y  R  W  R  H  I  E  G  L  N  V  *  K  K  N  *  I  Y  *  S  V   </first_frame>
            <second_frame>  F  F  P  L  K  L  K  S  E  T  S  N  N  F  S  H  T  Q  K  F  G  E  K  K  K  I  *  K  E  V  K  V  I  F  F  S  L  F  K  K  K  R  L  R  K  K  K  N  G  Q  S  T  F  L  *  E  N  E  L  E  E  R  V  M  G  S  R  R  R  P  N  S  H  L  L  H  *  Q  K  W  P  W  Q  L  A  R  T  P  *  T  S  W :   I  I  E  M  W  K  K  L  Q  I  E  V  D  E  L  F  E  S  T  Y  *  E  G  K  F  H  Q  R  R  R  R  *  Y  H  Q  F  T  *  N  S  W  K  *  :  M  V  S  N  S  S  K  I  T  G  K  N  G  *  *  N  K  K  Y  L  A  H  P  L  E  E  K  A  K  K  L  S  V  S  S  K  L  Q  K  T  Q  K  N  *  S  N  K  *  L  H  A  C  S  *  L  T  R  N  I  V  *  R  D  V  N  H  D  N  Q  F  I  I  K  W  Y  F  R  Y  D  D  R  R  S  N  S  D  *  T  R  R  N  G  L  I  G  V  F  R  Q  D  R  *  E  L  L  D  G  *  I  N  D  R  E  Q  F  R  L  C  Y  *  Y  G  W  *  R  I  *  K  L  R  H  V  *  *  Y  N  N  N  G  G  *  H  *  H  G  L  F  V  Q  L  F  H  K  D  *  G  I  F  R  I  T  R  T  L  R  G  Q  F  W  V  S  S  *  I  W  S  M  T  S  W  K  I  F  M  C  F  F  L  D  H  *  I  W  G  G  P  P  N  S  F  I  I  L  F  I  L  I  F  E  L  L  C  F  *  F  *  H  I  V  *  S  Y  H  *  *  V  D  S  G  K  Y  I  I  G  M  *  N  N  A  N  Y  T  D  G  D  I  L  R  D  L  M  Y  E  K  K  I  K  S  I  D  R  S  </second_frame>
            <third_frame>   S  F  H  *  N  *  R  V  R  L  L  I  I  S  L  T  H  K  N  L  E  K  K  K  R  Y  R  K  K  L  K  L  F  F  L  V  C  L  K  K  N  D  *  E  K  R  K  M  D  R  A  P  S  C  E  K  T  S  L  K  K  G  S  W  D  H  E  E  D  Q  I  L  I  S  Y  I  N  K  N  G  H  G  N  W  R  A  L  P  R  Q  A   : G  L  L  R  C  G  K  S  C  R  L  R  W  M  N  Y  L  S  P  H  I  K  R  G  N  F  T  K  E  E  E  D  N  I  I  N  L  H  E  I  L  G  N  R :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  I  W  H  T  H  L  K  K  R  L  K  N  C  Q  S  P  R  S  F  K  R  H  K  K  I  N  Q  I  N  N  C  M  H  A  P  N  S  P  E  I  S  S  S  E  T  S  I  M  T  T  N  S  S  S  S  G  T  F  D  T  T  I  D  D  Q  I  V  I  K  Q  E  E  M  D  S  S  E  Y  F  A  K  I  D  E  S  F  W  T  D  E  L  T  I  E  N  N  F  D  F  V  T  N  M  D  G  E  E  F  E  S  L  D  M  F  N  S  T  T  I  M  E  D  D  I  D  M  D  F  L  F  N  F  F  I  K  T  E  E  F  S  E  L  P  E  L  *  G  V  N  F  G  F  H  H  K  F  G  V  *  Q  V  G  K  F  L  C  V  F  F  L  T  I  K  Y  G  E  D  H  Q  I  L  L  L  F  Y  L  F  *  Y  L  N  F  F  V  F  S  F  N  I  *  Y  K  V  T  T  N  E  *  I  V  G  N  T  L  L  A  C  E  I  M  L  I  I  Q  M  E  T  Y  *  G  T  *  C  M  K  K  K  L  N  L  L  I  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98617" stop="98473"/>
                    <exon start="98009" stop="97880"/>
                    <exon start="97336" stop="96844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRKMDRAPSCEKTSLKKGSWDHEEDQILISYINKNGHGNWRALPRQAGLLRCGKSCRLRWMNYLSPHIKRGNFTKEEEDNIINLHEILGNRWSAIAARLPGRTDNEIKNIWHTHLKKRLKNCQSPRSFKRHKKINQINNCMHAPNSPEISSSETSIMTTNSSSSGTFDTTIDDQIVIKQEEMDSSEYFAKIDESFWTDELTIENNFDFVTNMDGEEFESLDMFNSTTIMEDDIDMDFLFNFFIKTEEFSELPEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="104813" PGL_stop="102893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104813" e_stop="103193"/>
            <exon e_start="102952" e_stop="102893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.256" e_score="1.000"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104813" e_stop="103193" e_length="1621"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.256">
            <gDNA_intron_boundary i_start="103192" i_stop="102953" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="0.550">
            <gDNA_exon_boundary e_start="102952" e_stop="102893" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104813" stop="103193"/>
              <exon start="102952" stop="102893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104259" stop="103439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104258" stop="103720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104181" stop="103708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGG : AGAATCACTCACCATTTGAAAGATATACTTGAATAAGAAAATTTTCTCCTCTATTTTATA</gDNA_template>
            <first_frame> N  Q  F  *  A  L  W  L  W  G  I  M  I  I  I  I  Y  K  C  L  M  H  L  I  W  L  K  L  N  F  T  I  L  Q  L  L  L  L  L  E  W  D  F  L  L  M  L  M  I  C  L  V  F  L  L  S  L  N  C  L  G  V  Y  T  I  P  N  R  I  F  *  N  P  E  H  S  L  R  P  Y  Q  P  R  S  R  V  L  P  L  L  A  P  *  P  A  S  Y  S  L  A  G  *  V  T  K  W  D  E  K  R  C  M  V  *  L  *  F  S  W  L  C  V  L  L  L  Q  G  S  P  L  V  V  H  L  R  V  L  *  L  H  C  V  F  L  G  F  G  L  D  L  V  L  V  V  I  T  L  C  P  L  P  S  C  L  N  T  L  T  K  R  H  V  V  H  S  *  R  R  Y  S  L  C  K  V  L  E  F  C  L  V  G  *  L  H  L  S  Q  Q  L  D  S  I  T  R  I  D  P  Q  L  S  R  K  M  L  L  Y  L  L  Y  H  N  R  T  T  F  G  V  S  F  S  C  L  D  H  C  Q  L  P  S  L  T  T  G  A  *  K  C  P  K  Q  H  V  T  R  L  *  S  R  K  T  R  R  E  P  R  R  T  W  V  R  Y  Y  R  W  K  L  K  A  R  K  P  K  S  N  K  F  Q  G  M  K  L  I  N  S  V  C  F  R  G  N  L  F  D  G  T  D  C  I  Y  S  E  R  V  P  R  G  F  Y  *  I  L  L  S  T  V  R  I  C  F  R  R  M  C  S  P  P  S  D  G  S  L  K  L  Q  Q  *  T  L  F  R  K  F  T  K  L  R  E  R  K  H  *  L  R  S  V  A  R  C  Q  G  T  G  S  P  W  R  L  L  T  L  L  E  G  S  L  S  N  *  W  D  S  S  S  *  Q  C  L  C  L  R  L  P  S  L  T  I  I  G  H  W  R  L  T  A  L  D  S  L  *  C  I  R  L  H  F  S  L  R  I  L  G  L  T  L  L  H  L  W  S  R  R  R  F  S  Q  R  G  F  D  Q  H  V  M  E  F  Q  R  L  Q  V  R  L  E  L  *  W  E  R  M  G  S  Y  T  L  H  K  V  K  I  Q  T  K  Q  M  Q  D  T  Q  R  E  L  E  *  K  T  R  *  L  F  *  A  V  S  M  H  L  E  C  Y  V  H  F  V  C  Q  S  Q  K  E  N  L  *  R  K  H  H  K  K  L  *  L  E  K  H  E  I  I  K  *  L   : E  N  H  S  P  F  E  R  Y  T  *  I  R  K  F  S  P  L  F  Y  </first_frame>
            <second_frame>  T  N  F  R  H  Y  G  C  G  G  *  *  *  *  *  F  T  S  A  *  C  T  *  F  G  *  N  S  T  L  P  F  Y  S  Y  C  Y  C  W  N  G  I  F  Y  *  C  L  *  S  V  *  Y  F  S  C  H  *  I  A  W  A  F  I  L  Y  Q  T  G  S  F  E  T  R  N  T  P  S  G  R  I  S  L  G  H  G  C  C  P  C  W  H  P  S  R  P  A  I  L  W  L  A  R  *  Q  N  G  T  K  K  G  V  W  Y  D  F  S  S  H  G  C  V  F  C  C  F  R  A  L  L  W  *  Y  T  *  G  C  Y  D  Y  I  V  F  F  *  V  L  A  W  I  W  Y  W  W  *  L  P  F  V  R  Y  H  H  V  *  I  R  *  Q  K  D  T  W  C  I  H  S  G  G  I  R  Y  A  R  F  W  N  F  V  *  W  D  S  C  T  Y  H  S  S  W  I  R  S  R  V  *  I  P  N  F  R  G  K  C  C  S  I  Y  C  T  T  I  G  L  H  L  A  Y  H  S  H  V  W  I  I  A  S  C  P  H  L  L  L  A  H  E  N  A  R  N  S  T  L  H  G  S  S  R  E  R  R  E  E  S  R  A  G  H  G  *  G  T  T  G  G  N  *  K  R  G  S  Q  N  R  T  N  F  K  E  *  N  *  S  I  R  S  V  F  V  G  I  C  S  T  A  R  I  A  F  I  R  N  V  F  H  V  V  F  I  R  Y  C  F  L  Q  S  E  F  V  S  E  G  C  V  L  R  R  R  M  D  P  *  S  S  N  N  E  R  C  S  G  S  L  Q  N  C  E  S  A  N  I  N  C  A  L  *  H  G  A  R  V  L  V  H  R  G  V  Y  *  H  Y  W  K  V  R  Y  P  I  D  G  I  L  L  H  D  S  V  Y  V  C  D  C  H  P  L  P  S  L  D  T  G  G  *  P  H  W  I  H  C  N  V  F  A  Y  I  F  L  C  E  F  W  A  *  R  Y  Y  I  C  G  P  G  G  D  F  P  S  E  A  S  I  N  M  S  W  N  F  S  G  C  R  *  G  W  S  Y  S  G  S  V  W  V  L  I  R  C  T  K  *  R  S  K  Q  N  R  C  R  I  P  S  G  N  W  N  K  K  L  A  N  C  S  R  L  Y  Q  C  T  W  N  V  M  Y  I  L  C  A  R  A  K  R  K  I  S  R  G  S  I  T  R  N  Y  N  W  R  S  M  R  S  L  N  D  W  :  R  I  T  H  H  L  K  D  I  L  E  *  E  N  F  L  L  Y  F  I </second_frame>
            <third_frame>   P  I  L  G  I  M  A  V  G  D  N  D  N  N  N  L  Q  V  L  N  A  L  D  L  A  K  T  Q  L  Y  H  F  T  A  I  V  I  A  G  M  G  F  F  T  D  A  Y  D  L  F  S  I  S  L  V  T  K  L  L  G  R  L  Y  Y  T  K  P  D  L  L  K  P  G  T  L  P  P  A  V  S  A  S  V  T  G  V  A  L  V  G  T  L  A  G  Q  L  F  F  G  W  L  G  D  K  M  G  R  K  K  V  Y  G  M  T  L  V  L  M  V  V  C  S  V  A  S  G  L  S  F  G  S  T  P  K  G  V  M  T  T  L  C  F  F  R  F  W  L  G  F  G  I  G  G  D  Y  P  L  S  A  T  I  M  S  E  Y  A  N  K  K  T  R  G  A  F  I  A  A  V  F  A  M  Q  G  F  G  I  L  F  S  G  I  V  A  L  I  T  A  A  G  F  D  H  A  Y  R  S  P  T  F  E  E  N  A  A  L  S  T  V  P  Q  S  D  Y  I  W  R  I  I  L  M  F  G  S  L  P  A  A  L  T  Y  Y  W  R  M  K  M  P  E  T  A  R  Y  T  A  L  V  A  K  D  A  K  R  A  A  Q  D  M  G  K  V  L  Q  V  E  I  E  S  E  E  A  K  I  E  Q  I  S  R  N  E  T  N  Q  F  G  L  F  S  W  E  F  V  R  R  H  G  L  H  L  F  G  T  C  S  T  W  F  L  L  D  I  A  F  Y  S  Q  N  L  F  Q  K  D  V  F  S  A  V  G  W  I  P  K  A  P  T  M  N  A  V  Q  E  V  Y  K  I  A  R  A  Q  T  L  I  A  L  C  S  T  V  P  G  Y  W  F  T  V  A  F  I  D  I  I  G  R  F  A  I  Q  L  M  G  F  F  F  M  T  V  F  M  F  A  I  A  I  P  Y  H  H  W  T  L  E  A  N  R  I  G  F  I  V  M  Y  S  L  T  F  F  F  A  N  F  G  P  N  A  T  T  F  V  V  P  A  E  I  F  P  A  R  L  R  S  T  C  H  G  I  S  A  A  A  G  K  A  G  A  I  V  G  A  Y  G  F  L  Y  A  A  Q  S  K  D  P  N  K  T  D  A  G  Y  P  A  G  I  G  I  K  N  S  L  I  V  L  G  C  I  N  A  L  G  M  L  C  T  F  C  V  P  E  P  K  G  K  S  L  E  E  A  S  Q  E  T  I  T  G  E  A  *  D  H  *  M  I  G :   E  S  L  T  I  *  K  I  Y  L  N  K  K  I  F  S  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104811" stop="103210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILGIMAVGDNDNNNLQVLNALDLAKTQLYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRLYYTKPDLLKPGTLPPAVSASVTGVALVGTLAGQLFFGWLGDKMGRKKVYGMTLVLMVVCSVASGLSFGSTPKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILFSGIVALITAAGFDHAYRSPTFEENAALSTVPQSDYIWRIILMFGSLPAALTYYWRMKMPETARYTALVAKDAKRAAQDMGKVLQVEIESEEAKIEQISRNETNQFGLFSWEFVRRHGLHLFGTCSTWFLLDIAFYSQNLFQKDVFSAVGWIPKAPTMNAVQEVYKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEANRIGFIVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAYGFLYAAQSKDPNKTDAGYPAGIGIKNSLIVLGCINALGMLCTFCVPEPKGKSLEEASQETITGEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="116865" PGL_stop="118690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116865" e_stop="118690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="116865" e_stop="118690" e_length="1826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116865" stop="118690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117439" stop="118259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117440" stop="117978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117517" stop="117990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117824" stop="118689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118332" stop="118683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118332" stop="118683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118332" stop="118683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118332" stop="118683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGATATGACC</gDNA_template>
            <first_frame> R  K  C  T  I  F  *  T  N  F  R  H  Y  G  C  G  G  *  *  *  *  *  F  T  S  A  *  C  T  *  F  G  *  N  S  T  L  P  F  Y  S  Y  C  Y  C  W  N  G  I  F  Y  *  C  L  *  S  V  *  Y  F  S  C  H  *  I  A  W  A  F  I  L  Y  Q  T  G  S  F  E  T  R  N  T  P  S  G  R  I  S  L  G  H  G  C  C  P  C  W  H  P  S  R  P  A  I  L  W  L  A  R  *  Q  N  G  T  K  K  G  V  W  Y  D  F  S  S  H  G  C  V  F  C  C  F  R  A  L  L  W  *  Y  T  *  G  C  Y  D  Y  I  V  F  F  *  V  L  A  W  I  W  Y  W  W  *  L  P  F  V  R  Y  H  H  V  *  I  R  *  Q  K  D  T  W  C  I  H  S  G  G  I  R  Y  A  R  F  W  N  F  V  *  W  D  S  C  T  Y  H  S  S  W  I  R  S  R  V  *  I  P  N  F  R  G  K  C  C  S  I  Y  C  T  T  I  G  L  H  L  A  Y  H  S  H  V  W  I  I  A  S  C  P  H  L  L  L  A  H  E  N  A  R  N  S  T  L  H  G  S  S  R  E  R  R  E  E  S  R  A  G  H  G  *  G  T  T  G  G  N  *  K  R  G  S  Q  N  R  T  N  F  K  E  *  N  *  S  I  R  S  V  F  V  G  I  C  S  T  A  R  I  A  F  I  R  N  V  F  H  V  V  F  I  R  Y  C  F  L  Q  S  E  F  V  S  E  G  C  V  L  R  R  R  M  D  P  *  S  S  N  N  E  R  C  S  G  S  L  Q  N  C  E  S  A  N  I  N  C  A  L  *  H  G  A  R  V  L  V  H  R  G  V  Y  *  H  Y  W  K  V  R  Y  P  I  D  G  I  L  L  H  D  S  V  Y  V  C  D  C  H  P  L  P  S  L  D  T  G  G  *  P  H  W  I  H  C  N  V  F  A  Y  I  F  L  C  E  F  W  A  *  R  Y  Y  I  C  G  P  G  G  D  F  P  S  E  A  S  I  N  M  S  W  N  F  S  G  C  R  *  G  W  S  Y  S  G  S  V  W  V  L  I  R  C  T  K  *  R  S  K  Q  N  R  C  R  I  P  S  G  N  W  N  K  K  L  A  N  C  S  R  L  Y  Q  C  T  W  N  V  M  Y  I  L  C  A  R  A  K  R  K  I  S  R  G  S  I  T  R  N  Y  N  W  R  S  M  R  S  L  N  D  W  K  I  T  F  F  F  N  V  F  V  G  L  I  S  V  F  F  V  L  C  K  L  V  C  C  K  F  L  L  Y  Y  F  F  V  A  K  C  V  I  V  K  W  F  C  Y  L  F  I  L  *  I  K  K  L  F  V  N  C  V  I  *   </first_frame>
            <second_frame>  E  S  A  Q  F  F  E  P  I  L  G  I  M  A  V  G  D  N  D  N  N  N  L  Q  V  L  N  A  L  D  L  A  K  T  Q  L  Y  H  F  T  A  I  V  I  A  G  M  G  F  F  T  D  A  Y  D  L  F  S  I  S  L  V  T  K  L  L  G  R  L  Y  Y  T  K  P  D  L  L  K  P  G  T  L  P  P  A  V  S  A  S  V  T  G  V  A  L  V  G  T  L  A  G  Q  L  F  F  G  W  L  G  D  K  M  G  R  K  K  V  Y  G  M  T  L  V  L  M  V  V  C  S  V  A  S  G  L  S  F  G  S  T  P  K  G  V  M  T  T  L  C  F  F  R  F  W  L  G  F  G  I  G  G  D  Y  P  L  S  A  T  I  M  S  E  Y  A  N  K  K  T  R  G  A  F  I  A  A  V  F  A  M  Q  G  F  G  I  L  F  S  G  I  V  A  L  I  T  A  A  G  F  D  H  A  Y  R  S  P  T  F  E  E  N  A  A  L  S  T  V  P  Q  S  D  Y  I  W  R  I  I  L  M  F  G  S  L  P  A  A  L  T  Y  Y  W  R  M  K  M  P  E  T  A  R  Y  T  A  L  V  A  K  D  A  K  R  A  A  Q  D  M  G  K  V  L  Q  V  E  I  E  S  E  E  A  K  I  E  Q  I  S  R  N  E  T  N  Q  F  G  L  F  S  W  E  F  V  R  R  H  G  L  H  L  F  G  T  C  S  T  W  F  L  L  D  I  A  F  Y  S  Q  N  L  F  Q  K  D  V  F  S  A  V  G  W  I  P  K  A  P  T  M  N  A  V  Q  E  V  Y  K  I  A  R  A  Q  T  L  I  A  L  C  S  T  V  P  G  Y  W  F  T  V  A  F  I  D  I  I  G  R  F  A  I  Q  L  M  G  F  F  F  M  T  V  F  M  F  A  I  A  I  P  Y  H  H  W  T  L  E  A  N  R  I  G  F  I  V  M  Y  S  L  T  F  F  F  A  N  F  G  P  N  A  T  T  F  V  V  P  A  E  I  F  P  A  R  L  R  S  T  C  H  G  I  S  A  A  A  G  K  A  G  A  I  V  G  A  Y  G  F  L  Y  A  A  Q  S  K  D  P  N  K  T  D  A  G  Y  P  A  G  I  G  I  K  N  S  L  I  V  L  G  C  I  N  A  L  G  M  L  C  T  F  C  V  P  E  P  K  G  K  S  L  E  E  A  S  Q  E  T  I  T  G  E  A  *  D  H  *  M  I  G  K  S  L  F  F  L  M  F  L  L  V  *  F  Q  F  S  L  Y  C  V  S  L  F  V  A  S  F  Y  C  I  I  F  L  W  P  S  V  L  L  *  N  G  F  A  I  Y  L  Y  Y  K  *  K  N  C  L  *  I  V  *  Y  D  </second_frame>
            <third_frame>   K  V  H  N  F  L  N  Q  F  *  A  L  W  L  W  G  I  M  I  I  I  I  Y  K  C  L  M  H  L  I  W  L  K  L  N  F  T  I  L  Q  L  L  L  L  L  E  W  D  F  L  L  M  L  M  I  C  L  V  F  L  L  S  L  N  C  L  G  V  Y  T  I  P  N  R  I  F  *  N  P  E  H  S  L  R  P  Y  Q  P  R  S  R  V  L  P  L  L  A  P  *  P  A  S  Y  S  L  A  G  *  V  T  K  W  D  E  K  R  C  M  V  *  L  *  F  S  W  L  C  V  L  L  L  Q  G  S  P  L  V  V  H  L  R  V  L  *  L  H  C  V  F  L  G  F  G  L  D  L  V  L  V  V  I  T  L  C  P  L  P  S  C  L  N  T  L  T  K  R  H  V  V  H  S  *  R  R  Y  S  L  C  K  V  L  E  F  C  L  V  G  *  L  H  L  S  Q  Q  L  D  S  I  T  R  I  D  P  Q  L  S  R  K  M  L  L  Y  L  L  Y  H  N  R  T  T  F  G  V  S  F  S  C  L  D  H  C  Q  L  P  S  L  T  T  G  A  *  K  C  P  K  Q  H  V  T  R  L  *  S  R  K  T  R  R  E  P  R  R  T  W  V  R  Y  Y  R  W  K  L  K  A  R  K  P  K  S  N  K  F  Q  G  M  K  L  I  N  S  V  C  F  R  G  N  L  F  D  G  T  D  C  I  Y  S  E  R  V  P  R  G  F  Y  *  I  L  L  S  T  V  R  I  C  F  R  R  M  C  S  P  P  S  D  G  S  L  K  L  Q  Q  *  T  L  F  R  K  F  T  K  L  R  E  R  K  H  *  L  R  S  V  A  R  C  Q  G  T  G  S  P  W  R  L  L  T  L  L  E  G  S  L  S  N  *  W  D  S  S  S  *  Q  C  L  C  L  R  L  P  S  L  T  I  I  G  H  W  R  L  T  A  L  D  S  L  *  C  I  R  L  H  F  S  L  R  I  L  G  L  T  L  L  H  L  W  S  R  R  R  F  S  Q  R  G  F  D  Q  H  V  M  E  F  Q  R  L  Q  V  R  L  E  L  *  W  E  R  M  G  S  Y  T  L  H  K  V  K  I  Q  T  K  Q  M  Q  D  T  Q  R  E  L  E  *  K  T  R  *  L  F  *  A  V  S  M  H  L  E  C  Y  V  H  F  V  C  Q  S  Q  K  E  N  L  *  R  K  H  H  K  K  L  *  L  E  K  H  E  I  I  K  *  L  E  N  H  F  F  F  *  C  F  C  W  F  N  F  S  F  L  C  I  V  *  A  C  L  L  Q  V  F  I  V  L  F  F  C  G  Q  V  C  Y  C  K  M  V  L  L  F  I  Y  I  I  N  K  K  I  V  C  K  L  C  D  M  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0207A03.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116866" stop="118488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESAQFFEPILGIMAVGDNDNNNLQVLNALDLAKTQLYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRLYYTKPDLLKPGTLPPAVSASVTGVALVGTLAGQLFFGWLGDKMGRKKVYGMTLVLMVVCSVASGLSFGSTPKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILFSGIVALITAAGFDHAYRSPTFEENAALSTVPQSDYIWRIILMFGSLPAALTYYWRMKMPETARYTALVAKDAKRAAQDMGKVLQVEIESEEAKIEQISRNETNQFGLFSWEFVRRHGLHLFGTCSTWFLLDIAFYSQNLFQKDVFSAVGWIPKAPTMNAVQEVYKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEANRIGFIVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAYGFLYAAQSKDPNKTDAGYPAGIGIKNSLIVLGCINALGMLCTFCVPEPKGKSLEEASQETITGEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 326 chains have been computed
$ 
$ memory statistics:
$ 907208 bytes spliced alignments in total
$ 249 spliced alignments have been stored
$ 3643 bytes was the average size of a spliced alignment
$ 41760 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1740 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 344 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:00:21
-->
